Multiple sequence alignment - TraesCS5A01G137500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G137500 chr5A 100.000 3353 0 0 1 3353 309594183 309597535 0.000000e+00 6192.0
1 TraesCS5A01G137500 chr5A 86.434 258 30 5 2645 2900 29779712 29779458 9.160000e-71 278.0
2 TraesCS5A01G137500 chr5A 92.857 112 8 0 2535 2646 380168928 380169039 2.680000e-36 163.0
3 TraesCS5A01G137500 chr5A 93.617 47 3 0 3307 3353 131630292 131630338 1.670000e-08 71.3
4 TraesCS5A01G137500 chr5B 92.516 2285 119 23 255 2512 255891072 255893331 0.000000e+00 3225.0
5 TraesCS5A01G137500 chr5B 88.529 401 37 7 2921 3317 255924243 255924638 8.420000e-131 477.0
6 TraesCS5A01G137500 chr5B 89.474 247 26 0 2654 2900 255893330 255893576 2.510000e-81 313.0
7 TraesCS5A01G137500 chr5D 95.010 1944 70 8 585 2513 242647492 242645561 0.000000e+00 3027.0
8 TraesCS5A01G137500 chr5D 91.038 424 30 7 2900 3317 242645271 242644850 1.750000e-157 566.0
9 TraesCS5A01G137500 chr5D 86.820 478 44 9 1 471 242834949 242834484 1.780000e-142 516.0
10 TraesCS5A01G137500 chr5D 89.423 208 22 0 2670 2877 41450338 41450131 2.570000e-66 263.0
11 TraesCS5A01G137500 chr5D 85.075 268 20 8 2653 2917 242645557 242645307 4.290000e-64 255.0
12 TraesCS5A01G137500 chr5D 95.833 48 1 1 3306 3353 47708044 47708090 3.590000e-10 76.8
13 TraesCS5A01G137500 chr7B 86.957 253 27 4 2646 2897 593072081 593072328 2.550000e-71 279.0
14 TraesCS5A01G137500 chr3A 88.158 228 26 1 2670 2897 716965281 716965507 1.530000e-68 270.0
15 TraesCS5A01G137500 chrUn 85.281 231 32 2 2670 2898 323126598 323126828 1.560000e-58 237.0
16 TraesCS5A01G137500 chrUn 85.281 231 32 2 2670 2898 323129814 323130044 1.560000e-58 237.0
17 TraesCS5A01G137500 chrUn 85.281 231 32 2 2670 2898 353152947 353152717 1.560000e-58 237.0
18 TraesCS5A01G137500 chrUn 78.986 138 16 5 2511 2646 15470255 15470129 7.710000e-12 82.4
19 TraesCS5A01G137500 chr2A 88.194 144 9 1 2511 2646 642916172 642916029 7.440000e-37 165.0
20 TraesCS5A01G137500 chr2B 87.586 145 9 2 2511 2646 161206829 161206973 3.460000e-35 159.0
21 TraesCS5A01G137500 chr4A 90.909 110 10 0 2535 2644 443545181 443545072 7.500000e-32 148.0
22 TraesCS5A01G137500 chr7A 83.688 141 14 2 2513 2644 19958123 19957983 1.260000e-24 124.0
23 TraesCS5A01G137500 chr7A 97.619 42 1 0 3312 3353 565395914 565395873 4.640000e-09 73.1
24 TraesCS5A01G137500 chr6B 95.833 48 1 1 3306 3353 365388661 365388615 3.590000e-10 76.8
25 TraesCS5A01G137500 chr6B 95.556 45 2 0 3309 3353 35381755 35381799 4.640000e-09 73.1
26 TraesCS5A01G137500 chr6D 95.745 47 1 1 3308 3353 226014706 226014660 1.290000e-09 75.0
27 TraesCS5A01G137500 chr3D 97.619 42 1 0 3312 3353 547883337 547883378 4.640000e-09 73.1
28 TraesCS5A01G137500 chr3D 90.385 52 4 1 3303 3353 612319511 612319562 2.160000e-07 67.6
29 TraesCS5A01G137500 chr2D 93.750 48 2 1 3306 3353 131092589 131092543 1.670000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G137500 chr5A 309594183 309597535 3352 False 6192.000000 6192 100.000000 1 3353 1 chr5A.!!$F2 3352
1 TraesCS5A01G137500 chr5B 255891072 255893576 2504 False 1769.000000 3225 90.995000 255 2900 2 chr5B.!!$F2 2645
2 TraesCS5A01G137500 chr5D 242644850 242647492 2642 True 1282.666667 3027 90.374333 585 3317 3 chr5D.!!$R3 2732
3 TraesCS5A01G137500 chrUn 323126598 323130044 3446 False 237.000000 237 85.281000 2670 2898 2 chrUn.!!$F1 228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1008 0.029035 CGTTCTACCGCGAGTGCTAT 59.971 55.0 8.23 0.0 39.65 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 2549 0.108041 GGAATCCGAACACGGCCTTA 60.108 55.0 0.0 0.0 45.52 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.914426 TGCAATTAGAACCTCCTCTCC 57.086 47.619 0.00 0.00 0.00 3.71
21 22 3.454858 TGCAATTAGAACCTCCTCTCCT 58.545 45.455 0.00 0.00 0.00 3.69
22 23 3.846588 TGCAATTAGAACCTCCTCTCCTT 59.153 43.478 0.00 0.00 0.00 3.36
23 24 4.195416 GCAATTAGAACCTCCTCTCCTTG 58.805 47.826 0.00 0.00 0.00 3.61
24 25 4.195416 CAATTAGAACCTCCTCTCCTTGC 58.805 47.826 0.00 0.00 0.00 4.01
25 26 2.623418 TAGAACCTCCTCTCCTTGCA 57.377 50.000 0.00 0.00 0.00 4.08
26 27 1.734655 AGAACCTCCTCTCCTTGCAA 58.265 50.000 0.00 0.00 0.00 4.08
27 28 1.627834 AGAACCTCCTCTCCTTGCAAG 59.372 52.381 19.93 19.93 0.00 4.01
28 29 1.349357 GAACCTCCTCTCCTTGCAAGT 59.651 52.381 24.35 2.04 0.00 3.16
29 30 2.327325 ACCTCCTCTCCTTGCAAGTA 57.673 50.000 24.35 8.77 0.00 2.24
30 31 2.621070 ACCTCCTCTCCTTGCAAGTAA 58.379 47.619 24.35 11.62 0.00 2.24
31 32 2.979678 ACCTCCTCTCCTTGCAAGTAAA 59.020 45.455 24.35 9.18 0.00 2.01
32 33 3.244596 ACCTCCTCTCCTTGCAAGTAAAC 60.245 47.826 24.35 0.00 0.00 2.01
33 34 2.996621 CTCCTCTCCTTGCAAGTAAACG 59.003 50.000 24.35 9.34 0.00 3.60
34 35 2.367567 TCCTCTCCTTGCAAGTAAACGT 59.632 45.455 24.35 0.00 0.00 3.99
35 36 2.737252 CCTCTCCTTGCAAGTAAACGTC 59.263 50.000 24.35 0.00 0.00 4.34
36 37 2.400399 TCTCCTTGCAAGTAAACGTCG 58.600 47.619 24.35 7.18 0.00 5.12
37 38 0.863144 TCCTTGCAAGTAAACGTCGC 59.137 50.000 24.35 0.00 0.00 5.19
38 39 0.584396 CCTTGCAAGTAAACGTCGCA 59.416 50.000 24.35 0.00 0.00 5.10
39 40 1.658968 CTTGCAAGTAAACGTCGCAC 58.341 50.000 18.65 0.00 31.10 5.34
40 41 1.004398 CTTGCAAGTAAACGTCGCACA 60.004 47.619 18.65 0.00 31.10 4.57
41 42 1.007580 TGCAAGTAAACGTCGCACAA 58.992 45.000 0.00 0.00 0.00 3.33
42 43 1.600013 TGCAAGTAAACGTCGCACAAT 59.400 42.857 0.00 0.00 0.00 2.71
43 44 2.032302 TGCAAGTAAACGTCGCACAATT 59.968 40.909 0.00 0.00 0.00 2.32
44 45 2.400408 GCAAGTAAACGTCGCACAATTG 59.600 45.455 3.24 3.24 0.00 2.32
45 46 2.309898 AGTAAACGTCGCACAATTGC 57.690 45.000 5.05 0.00 46.21 3.56
54 55 3.920738 CACAATTGCACACGTGGC 58.079 55.556 21.57 19.77 0.00 5.01
55 56 1.661197 CACAATTGCACACGTGGCC 60.661 57.895 21.57 10.58 0.00 5.36
56 57 2.428902 CAATTGCACACGTGGCCG 60.429 61.111 21.57 9.01 40.83 6.13
77 78 2.361230 GGCCAGCCCAACTACCAC 60.361 66.667 0.00 0.00 0.00 4.16
78 79 2.434331 GCCAGCCCAACTACCACA 59.566 61.111 0.00 0.00 0.00 4.17
79 80 1.228429 GCCAGCCCAACTACCACAA 60.228 57.895 0.00 0.00 0.00 3.33
80 81 1.244019 GCCAGCCCAACTACCACAAG 61.244 60.000 0.00 0.00 0.00 3.16
81 82 0.110486 CCAGCCCAACTACCACAAGT 59.890 55.000 0.00 0.00 0.00 3.16
82 83 1.238439 CAGCCCAACTACCACAAGTG 58.762 55.000 0.00 0.00 0.00 3.16
83 84 0.843984 AGCCCAACTACCACAAGTGT 59.156 50.000 0.00 0.00 0.00 3.55
84 85 1.214424 AGCCCAACTACCACAAGTGTT 59.786 47.619 0.00 0.00 0.00 3.32
85 86 2.028876 GCCCAACTACCACAAGTGTTT 58.971 47.619 0.00 0.00 0.00 2.83
86 87 2.429250 GCCCAACTACCACAAGTGTTTT 59.571 45.455 0.00 0.00 0.00 2.43
87 88 3.118920 GCCCAACTACCACAAGTGTTTTT 60.119 43.478 0.00 0.00 0.00 1.94
88 89 4.678622 CCCAACTACCACAAGTGTTTTTC 58.321 43.478 0.00 0.00 0.00 2.29
89 90 4.401202 CCCAACTACCACAAGTGTTTTTCT 59.599 41.667 0.00 0.00 0.00 2.52
90 91 5.449999 CCCAACTACCACAAGTGTTTTTCTC 60.450 44.000 0.00 0.00 0.00 2.87
91 92 5.124776 CCAACTACCACAAGTGTTTTTCTCA 59.875 40.000 0.00 0.00 0.00 3.27
92 93 6.258160 CAACTACCACAAGTGTTTTTCTCAG 58.742 40.000 0.00 0.00 0.00 3.35
93 94 5.497474 ACTACCACAAGTGTTTTTCTCAGT 58.503 37.500 0.00 0.00 0.00 3.41
94 95 5.944007 ACTACCACAAGTGTTTTTCTCAGTT 59.056 36.000 0.00 0.00 0.00 3.16
95 96 5.722021 ACCACAAGTGTTTTTCTCAGTTT 57.278 34.783 0.00 0.00 0.00 2.66
96 97 6.096673 ACCACAAGTGTTTTTCTCAGTTTT 57.903 33.333 0.00 0.00 0.00 2.43
97 98 7.222000 ACCACAAGTGTTTTTCTCAGTTTTA 57.778 32.000 0.00 0.00 0.00 1.52
98 99 7.836842 ACCACAAGTGTTTTTCTCAGTTTTAT 58.163 30.769 0.00 0.00 0.00 1.40
99 100 7.759433 ACCACAAGTGTTTTTCTCAGTTTTATG 59.241 33.333 0.00 0.00 0.00 1.90
100 101 7.973388 CCACAAGTGTTTTTCTCAGTTTTATGA 59.027 33.333 0.00 0.00 0.00 2.15
101 102 9.352784 CACAAGTGTTTTTCTCAGTTTTATGAA 57.647 29.630 0.00 0.00 0.00 2.57
102 103 9.921637 ACAAGTGTTTTTCTCAGTTTTATGAAA 57.078 25.926 0.00 0.00 0.00 2.69
104 105 8.634475 AGTGTTTTTCTCAGTTTTATGAAAGC 57.366 30.769 0.00 0.00 31.37 3.51
105 106 8.470002 AGTGTTTTTCTCAGTTTTATGAAAGCT 58.530 29.630 0.00 0.00 31.70 3.74
106 107 8.746751 GTGTTTTTCTCAGTTTTATGAAAGCTC 58.253 33.333 0.00 0.00 28.82 4.09
107 108 8.686334 TGTTTTTCTCAGTTTTATGAAAGCTCT 58.314 29.630 0.00 0.00 28.82 4.09
110 111 9.778741 TTTTCTCAGTTTTATGAAAGCTCTAGA 57.221 29.630 0.00 0.00 28.82 2.43
111 112 9.950496 TTTCTCAGTTTTATGAAAGCTCTAGAT 57.050 29.630 0.00 0.00 28.82 1.98
112 113 9.950496 TTCTCAGTTTTATGAAAGCTCTAGATT 57.050 29.630 0.00 0.00 28.82 2.40
113 114 9.376075 TCTCAGTTTTATGAAAGCTCTAGATTG 57.624 33.333 0.00 0.00 28.82 2.67
114 115 9.160496 CTCAGTTTTATGAAAGCTCTAGATTGT 57.840 33.333 0.00 0.00 28.82 2.71
115 116 9.507329 TCAGTTTTATGAAAGCTCTAGATTGTT 57.493 29.630 0.00 0.00 28.82 2.83
118 119 9.899226 GTTTTATGAAAGCTCTAGATTGTTTGT 57.101 29.630 0.00 0.00 0.00 2.83
120 121 9.897744 TTTATGAAAGCTCTAGATTGTTTGTTG 57.102 29.630 0.00 0.00 0.00 3.33
121 122 6.942532 TGAAAGCTCTAGATTGTTTGTTGT 57.057 33.333 0.00 0.00 0.00 3.32
122 123 7.333528 TGAAAGCTCTAGATTGTTTGTTGTT 57.666 32.000 0.00 0.00 0.00 2.83
123 124 7.771183 TGAAAGCTCTAGATTGTTTGTTGTTT 58.229 30.769 0.00 0.00 0.00 2.83
124 125 7.915397 TGAAAGCTCTAGATTGTTTGTTGTTTC 59.085 33.333 0.00 0.00 0.00 2.78
125 126 7.573968 AAGCTCTAGATTGTTTGTTGTTTCT 57.426 32.000 0.00 0.00 0.00 2.52
126 127 7.573968 AGCTCTAGATTGTTTGTTGTTTCTT 57.426 32.000 0.00 0.00 0.00 2.52
127 128 8.000780 AGCTCTAGATTGTTTGTTGTTTCTTT 57.999 30.769 0.00 0.00 0.00 2.52
128 129 8.470002 AGCTCTAGATTGTTTGTTGTTTCTTTT 58.530 29.630 0.00 0.00 0.00 2.27
129 130 9.087424 GCTCTAGATTGTTTGTTGTTTCTTTTT 57.913 29.630 0.00 0.00 0.00 1.94
151 152 4.993029 TTTCCCTGAATTTTCGTGTTGT 57.007 36.364 0.00 0.00 0.00 3.32
152 153 4.993029 TTCCCTGAATTTTCGTGTTGTT 57.007 36.364 0.00 0.00 0.00 2.83
153 154 4.993029 TCCCTGAATTTTCGTGTTGTTT 57.007 36.364 0.00 0.00 0.00 2.83
154 155 5.331876 TCCCTGAATTTTCGTGTTGTTTT 57.668 34.783 0.00 0.00 0.00 2.43
155 156 5.344884 TCCCTGAATTTTCGTGTTGTTTTC 58.655 37.500 0.00 0.00 0.00 2.29
156 157 5.126384 TCCCTGAATTTTCGTGTTGTTTTCT 59.874 36.000 0.00 0.00 0.00 2.52
157 158 5.810074 CCCTGAATTTTCGTGTTGTTTTCTT 59.190 36.000 0.00 0.00 0.00 2.52
158 159 6.312672 CCCTGAATTTTCGTGTTGTTTTCTTT 59.687 34.615 0.00 0.00 0.00 2.52
159 160 7.489757 CCCTGAATTTTCGTGTTGTTTTCTTTA 59.510 33.333 0.00 0.00 0.00 1.85
160 161 8.318167 CCTGAATTTTCGTGTTGTTTTCTTTAC 58.682 33.333 0.00 0.00 0.00 2.01
161 162 8.973835 TGAATTTTCGTGTTGTTTTCTTTACT 57.026 26.923 0.00 0.00 0.00 2.24
162 163 8.855279 TGAATTTTCGTGTTGTTTTCTTTACTG 58.145 29.630 0.00 0.00 0.00 2.74
163 164 8.973835 AATTTTCGTGTTGTTTTCTTTACTGA 57.026 26.923 0.00 0.00 0.00 3.41
164 165 9.581099 AATTTTCGTGTTGTTTTCTTTACTGAT 57.419 25.926 0.00 0.00 0.00 2.90
165 166 8.973835 TTTTCGTGTTGTTTTCTTTACTGATT 57.026 26.923 0.00 0.00 0.00 2.57
166 167 8.973835 TTTCGTGTTGTTTTCTTTACTGATTT 57.026 26.923 0.00 0.00 0.00 2.17
167 168 8.609478 TTCGTGTTGTTTTCTTTACTGATTTC 57.391 30.769 0.00 0.00 0.00 2.17
168 169 7.981142 TCGTGTTGTTTTCTTTACTGATTTCT 58.019 30.769 0.00 0.00 0.00 2.52
169 170 8.455682 TCGTGTTGTTTTCTTTACTGATTTCTT 58.544 29.630 0.00 0.00 0.00 2.52
170 171 9.072294 CGTGTTGTTTTCTTTACTGATTTCTTT 57.928 29.630 0.00 0.00 0.00 2.52
347 349 2.310779 ACCTTCTCCACTACAGCTGA 57.689 50.000 23.35 2.95 0.00 4.26
375 377 4.823790 GTTTTTGAGAAAACCGGCTAGA 57.176 40.909 0.00 0.00 45.64 2.43
377 379 5.212934 GTTTTTGAGAAAACCGGCTAGAAG 58.787 41.667 0.00 0.00 45.64 2.85
380 382 4.345859 TGAGAAAACCGGCTAGAAGAAA 57.654 40.909 0.00 0.00 0.00 2.52
383 385 2.825861 AAACCGGCTAGAAGAAACGA 57.174 45.000 0.00 0.00 0.00 3.85
389 391 2.347731 GGCTAGAAGAAACGAACCAGG 58.652 52.381 0.00 0.00 0.00 4.45
401 403 1.535462 CGAACCAGGCAAGAAAATCGT 59.465 47.619 0.00 0.00 0.00 3.73
412 414 2.489971 AGAAAATCGTTTGGAGTCGCA 58.510 42.857 0.00 0.00 0.00 5.10
414 416 2.681152 AAATCGTTTGGAGTCGCAAC 57.319 45.000 0.00 0.00 0.00 4.17
415 417 1.588674 AATCGTTTGGAGTCGCAACA 58.411 45.000 4.47 0.00 0.00 3.33
416 418 1.148310 ATCGTTTGGAGTCGCAACAG 58.852 50.000 4.47 0.00 0.00 3.16
417 419 0.179094 TCGTTTGGAGTCGCAACAGT 60.179 50.000 4.47 0.00 0.00 3.55
418 420 0.042188 CGTTTGGAGTCGCAACAGTG 60.042 55.000 4.47 0.00 0.00 3.66
512 514 0.671781 CACAGAAGTGGAGAAGCCCG 60.672 60.000 0.00 0.00 42.13 6.13
548 550 0.823356 AACAAGACCAGCGCCATTGT 60.823 50.000 2.29 5.60 35.70 2.71
549 551 1.237285 ACAAGACCAGCGCCATTGTC 61.237 55.000 2.29 5.90 28.22 3.18
550 552 2.034879 AAGACCAGCGCCATTGTCG 61.035 57.895 2.29 0.00 33.04 4.35
551 553 3.499737 GACCAGCGCCATTGTCGG 61.500 66.667 2.29 0.00 0.00 4.79
552 554 4.329545 ACCAGCGCCATTGTCGGT 62.330 61.111 2.29 0.00 38.25 4.69
553 555 3.499737 CCAGCGCCATTGTCGGTC 61.500 66.667 2.29 0.00 35.32 4.79
554 556 3.499737 CAGCGCCATTGTCGGTCC 61.500 66.667 2.29 0.00 35.32 4.46
555 557 4.015406 AGCGCCATTGTCGGTCCA 62.015 61.111 2.29 0.00 31.57 4.02
556 558 3.499737 GCGCCATTGTCGGTCCAG 61.500 66.667 0.00 0.00 0.00 3.86
557 559 2.047274 CGCCATTGTCGGTCCAGT 60.047 61.111 0.00 0.00 0.00 4.00
697 699 0.179179 GACCGCTGCTTTGATCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
709 711 2.554142 TGATCTTGCAGGCATAACTCG 58.446 47.619 0.00 0.00 0.00 4.18
712 714 4.039124 TGATCTTGCAGGCATAACTCGATA 59.961 41.667 0.00 0.00 0.00 2.92
715 717 5.368145 TCTTGCAGGCATAACTCGATATTT 58.632 37.500 0.00 0.00 0.00 1.40
732 734 4.966787 TTTGTCCCCCGTGCAGCC 62.967 66.667 0.00 0.00 0.00 4.85
864 871 2.679450 ACACGTGCAGCTAATTACGAA 58.321 42.857 17.22 0.00 39.61 3.85
921 947 2.160219 ACATGCACACACACATTCGATC 59.840 45.455 0.00 0.00 0.00 3.69
946 972 1.357690 CAACTGCAGCACTGGTGTG 59.642 57.895 15.27 6.07 46.37 3.82
982 1008 0.029035 CGTTCTACCGCGAGTGCTAT 59.971 55.000 8.23 0.00 39.65 2.97
988 1014 2.703409 CGCGAGTGCTATTGGTGC 59.297 61.111 0.00 0.00 39.65 5.01
1263 1290 2.027625 GTGCTTCGTCACGGGGAAG 61.028 63.158 0.00 0.00 41.96 3.46
1448 1475 2.181021 GGTCGTCATCGCCTCGTT 59.819 61.111 0.00 0.00 36.96 3.85
1452 1479 2.158959 CGTCATCGCCTCGTTGTCC 61.159 63.158 0.00 0.00 0.00 4.02
1500 1527 0.396435 TGACCATGTTCTTCCACGCT 59.604 50.000 0.00 0.00 0.00 5.07
1797 1824 0.169894 GGTACACGACCTTCGAGACC 59.830 60.000 1.94 3.05 45.89 3.85
2319 2346 1.444119 TTGCGTTGTGGGAGAAGCAC 61.444 55.000 0.00 0.00 34.13 4.40
2401 2431 5.010314 GTCATGCAATGTCATGGTTCCATAT 59.990 40.000 14.35 0.00 46.80 1.78
2402 2432 6.207221 GTCATGCAATGTCATGGTTCCATATA 59.793 38.462 14.35 0.00 46.80 0.86
2431 2461 0.827507 TGGCTTGGTTTCCTCCTTGC 60.828 55.000 0.00 0.00 0.00 4.01
2480 2519 3.502595 GGACTAGTTTTTCAACTCCAGGC 59.497 47.826 0.00 0.00 42.66 4.85
2481 2520 4.390264 GACTAGTTTTTCAACTCCAGGCT 58.610 43.478 0.00 0.00 42.66 4.58
2482 2521 4.137543 ACTAGTTTTTCAACTCCAGGCTG 58.862 43.478 7.75 7.75 42.66 4.85
2483 2522 3.018423 AGTTTTTCAACTCCAGGCTGT 57.982 42.857 14.43 0.00 39.15 4.40
2484 2523 4.164843 AGTTTTTCAACTCCAGGCTGTA 57.835 40.909 14.43 0.00 39.15 2.74
2485 2524 4.137543 AGTTTTTCAACTCCAGGCTGTAG 58.862 43.478 14.43 9.95 39.15 2.74
2486 2525 2.859165 TTTCAACTCCAGGCTGTAGG 57.141 50.000 14.43 5.46 0.00 3.18
2487 2526 0.984230 TTCAACTCCAGGCTGTAGGG 59.016 55.000 14.43 4.28 0.00 3.53
2488 2527 0.909610 TCAACTCCAGGCTGTAGGGG 60.910 60.000 14.43 0.00 0.00 4.79
2489 2528 2.301738 AACTCCAGGCTGTAGGGGC 61.302 63.158 14.43 0.00 0.00 5.80
2490 2529 2.688666 CTCCAGGCTGTAGGGGCA 60.689 66.667 14.43 0.00 0.00 5.36
2491 2530 3.009115 TCCAGGCTGTAGGGGCAC 61.009 66.667 14.43 0.00 0.00 5.01
2507 2546 3.180891 GGCACCCTCTATGAACAGTAC 57.819 52.381 0.00 0.00 0.00 2.73
2508 2547 2.500098 GGCACCCTCTATGAACAGTACA 59.500 50.000 0.00 0.00 0.00 2.90
2509 2548 3.134804 GGCACCCTCTATGAACAGTACAT 59.865 47.826 0.00 0.00 0.00 2.29
2510 2549 4.384208 GGCACCCTCTATGAACAGTACATT 60.384 45.833 0.00 0.00 0.00 2.71
2511 2550 5.163343 GGCACCCTCTATGAACAGTACATTA 60.163 44.000 0.00 0.00 0.00 1.90
2512 2551 6.346096 GCACCCTCTATGAACAGTACATTAA 58.654 40.000 0.00 0.00 0.00 1.40
2513 2552 6.480320 GCACCCTCTATGAACAGTACATTAAG 59.520 42.308 0.00 0.00 0.00 1.85
2514 2553 6.986817 CACCCTCTATGAACAGTACATTAAGG 59.013 42.308 0.00 0.00 32.74 2.69
2515 2554 5.992217 CCCTCTATGAACAGTACATTAAGGC 59.008 44.000 0.00 0.00 32.17 4.35
2516 2555 5.992217 CCTCTATGAACAGTACATTAAGGCC 59.008 44.000 0.00 0.00 0.00 5.19
2517 2556 5.597806 TCTATGAACAGTACATTAAGGCCG 58.402 41.667 0.00 0.00 0.00 6.13
2518 2557 3.688694 TGAACAGTACATTAAGGCCGT 57.311 42.857 0.00 0.00 0.00 5.68
2519 2558 3.331150 TGAACAGTACATTAAGGCCGTG 58.669 45.455 0.00 0.00 0.00 4.94
2520 2559 3.244284 TGAACAGTACATTAAGGCCGTGT 60.244 43.478 0.00 6.40 0.00 4.49
2521 2560 3.412237 ACAGTACATTAAGGCCGTGTT 57.588 42.857 0.00 0.00 0.00 3.32
2522 2561 3.332034 ACAGTACATTAAGGCCGTGTTC 58.668 45.455 0.00 2.04 0.00 3.18
2523 2562 2.347452 CAGTACATTAAGGCCGTGTTCG 59.653 50.000 0.00 0.00 0.00 3.95
2533 2572 4.515404 CGTGTTCGGATTCCCTCC 57.485 61.111 0.00 0.00 41.07 4.30
2540 2579 2.506472 GGATTCCCTCCGCTCCAC 59.494 66.667 0.00 0.00 33.29 4.02
2541 2580 2.107141 GATTCCCTCCGCTCCACG 59.893 66.667 0.00 0.00 43.15 4.94
2542 2581 4.162690 ATTCCCTCCGCTCCACGC 62.163 66.667 0.00 0.00 41.76 5.34
2565 2604 2.436646 CGGAGCGGCAATCCAGTT 60.437 61.111 1.45 0.00 36.57 3.16
2566 2605 1.153449 CGGAGCGGCAATCCAGTTA 60.153 57.895 1.45 0.00 36.57 2.24
2567 2606 0.742990 CGGAGCGGCAATCCAGTTAA 60.743 55.000 1.45 0.00 36.57 2.01
2568 2607 1.680338 GGAGCGGCAATCCAGTTAAT 58.320 50.000 1.45 0.00 36.79 1.40
2569 2608 2.024414 GGAGCGGCAATCCAGTTAATT 58.976 47.619 1.45 0.00 36.79 1.40
2570 2609 3.211045 GGAGCGGCAATCCAGTTAATTA 58.789 45.455 1.45 0.00 36.79 1.40
2571 2610 3.630312 GGAGCGGCAATCCAGTTAATTAA 59.370 43.478 1.45 0.00 36.79 1.40
2572 2611 4.497507 GGAGCGGCAATCCAGTTAATTAAC 60.498 45.833 18.77 18.77 36.79 2.01
2573 2612 3.064820 AGCGGCAATCCAGTTAATTAACG 59.935 43.478 19.92 15.03 40.96 3.18
2574 2613 3.359654 CGGCAATCCAGTTAATTAACGC 58.640 45.455 19.92 15.89 40.96 4.84
2575 2614 3.702330 GGCAATCCAGTTAATTAACGCC 58.298 45.455 19.92 19.94 40.96 5.68
2576 2615 3.129638 GGCAATCCAGTTAATTAACGCCA 59.870 43.478 25.37 14.42 40.96 5.69
2577 2616 4.202111 GGCAATCCAGTTAATTAACGCCAT 60.202 41.667 25.37 15.59 40.96 4.40
2578 2617 4.739716 GCAATCCAGTTAATTAACGCCATG 59.260 41.667 19.92 16.70 40.96 3.66
2579 2618 5.449862 GCAATCCAGTTAATTAACGCCATGA 60.450 40.000 19.92 13.85 40.96 3.07
2580 2619 6.735694 GCAATCCAGTTAATTAACGCCATGAT 60.736 38.462 19.92 15.11 40.96 2.45
2581 2620 6.959639 ATCCAGTTAATTAACGCCATGATT 57.040 33.333 19.92 0.41 40.96 2.57
2582 2621 6.767524 TCCAGTTAATTAACGCCATGATTT 57.232 33.333 19.92 0.00 40.96 2.17
2583 2622 6.559810 TCCAGTTAATTAACGCCATGATTTG 58.440 36.000 19.92 10.81 40.96 2.32
2584 2623 5.231991 CCAGTTAATTAACGCCATGATTTGC 59.768 40.000 19.92 0.00 40.96 3.68
2592 2631 1.632422 GCCATGATTTGCGAAGTTGG 58.368 50.000 0.00 7.62 0.00 3.77
2593 2632 1.067635 GCCATGATTTGCGAAGTTGGT 60.068 47.619 11.82 0.00 0.00 3.67
2594 2633 2.610232 GCCATGATTTGCGAAGTTGGTT 60.610 45.455 11.82 0.00 0.00 3.67
2595 2634 3.366883 GCCATGATTTGCGAAGTTGGTTA 60.367 43.478 11.82 0.00 0.00 2.85
2596 2635 4.804108 CCATGATTTGCGAAGTTGGTTAA 58.196 39.130 0.00 0.00 0.00 2.01
2597 2636 5.226396 CCATGATTTGCGAAGTTGGTTAAA 58.774 37.500 0.00 0.00 0.00 1.52
2598 2637 5.118510 CCATGATTTGCGAAGTTGGTTAAAC 59.881 40.000 0.00 0.00 39.24 2.01
2599 2638 4.612943 TGATTTGCGAAGTTGGTTAAACC 58.387 39.130 0.00 0.00 39.85 3.27
2600 2639 3.439895 TTTGCGAAGTTGGTTAAACCC 57.560 42.857 0.00 0.00 39.85 4.11
2601 2640 1.320507 TGCGAAGTTGGTTAAACCCC 58.679 50.000 0.00 0.00 39.85 4.95
2602 2641 0.239082 GCGAAGTTGGTTAAACCCCG 59.761 55.000 0.00 0.00 39.85 5.73
2603 2642 0.239082 CGAAGTTGGTTAAACCCCGC 59.761 55.000 0.00 0.00 39.85 6.13
2604 2643 1.612676 GAAGTTGGTTAAACCCCGCT 58.387 50.000 0.00 0.00 39.85 5.52
2605 2644 1.538512 GAAGTTGGTTAAACCCCGCTC 59.461 52.381 0.00 0.00 39.85 5.03
2606 2645 0.251033 AGTTGGTTAAACCCCGCTCC 60.251 55.000 0.00 0.00 39.85 4.70
2607 2646 1.302671 TTGGTTAAACCCCGCTCCG 60.303 57.895 0.00 0.00 37.50 4.63
2634 2673 3.443925 CTCTGCGAGGACTGCCGA 61.444 66.667 0.00 0.00 39.96 5.54
2635 2674 2.989253 TCTGCGAGGACTGCCGAA 60.989 61.111 0.00 0.00 39.96 4.30
2636 2675 2.811317 CTGCGAGGACTGCCGAAC 60.811 66.667 0.00 0.00 39.96 3.95
2637 2676 4.717629 TGCGAGGACTGCCGAACG 62.718 66.667 0.00 0.00 39.96 3.95
2670 2709 8.655651 AAAAAGGATAGAAAACAAAATCGCAA 57.344 26.923 0.00 0.00 0.00 4.85
2671 2710 8.655651 AAAAGGATAGAAAACAAAATCGCAAA 57.344 26.923 0.00 0.00 0.00 3.68
2672 2711 8.655651 AAAGGATAGAAAACAAAATCGCAAAA 57.344 26.923 0.00 0.00 0.00 2.44
2673 2712 8.831715 AAGGATAGAAAACAAAATCGCAAAAT 57.168 26.923 0.00 0.00 0.00 1.82
2674 2713 9.921637 AAGGATAGAAAACAAAATCGCAAAATA 57.078 25.926 0.00 0.00 0.00 1.40
2678 2717 9.906660 ATAGAAAACAAAATCGCAAAATACTGA 57.093 25.926 0.00 0.00 0.00 3.41
2685 2724 8.327429 ACAAAATCGCAAAATACTGAAACTTTG 58.673 29.630 0.00 0.00 32.99 2.77
2699 2738 6.803320 ACTGAAACTTTGCGACATCAAATATG 59.197 34.615 0.00 0.00 35.64 1.78
2700 2739 5.572511 TGAAACTTTGCGACATCAAATATGC 59.427 36.000 0.00 0.00 35.64 3.14
2701 2740 4.970662 ACTTTGCGACATCAAATATGCT 57.029 36.364 0.00 0.00 35.64 3.79
2702 2741 5.314923 ACTTTGCGACATCAAATATGCTT 57.685 34.783 0.00 0.00 35.64 3.91
2711 5966 9.284594 GCGACATCAAATATGCTTAAACTTTAA 57.715 29.630 0.00 0.00 0.00 1.52
2804 6060 5.978919 TCAAAATTGTGAGCACTTTTAGCAG 59.021 36.000 0.00 0.00 35.98 4.24
2900 6156 5.408299 ACGTTTGATCATCTTTGATGTTCGA 59.592 36.000 0.00 6.10 42.73 3.71
2901 6157 5.956070 CGTTTGATCATCTTTGATGTTCGAG 59.044 40.000 0.00 0.33 42.73 4.04
2902 6158 5.475273 TTGATCATCTTTGATGTTCGAGC 57.525 39.130 0.00 0.00 42.73 5.03
2903 6159 4.763073 TGATCATCTTTGATGTTCGAGCT 58.237 39.130 0.00 0.00 42.73 4.09
2904 6160 5.181009 TGATCATCTTTGATGTTCGAGCTT 58.819 37.500 0.00 0.00 42.73 3.74
2905 6161 5.292834 TGATCATCTTTGATGTTCGAGCTTC 59.707 40.000 8.02 8.02 42.73 3.86
2906 6162 4.568956 TCATCTTTGATGTTCGAGCTTCA 58.431 39.130 12.79 12.79 0.00 3.02
2908 6164 4.934075 TCTTTGATGTTCGAGCTTCATG 57.066 40.909 16.58 12.93 0.00 3.07
2909 6165 4.318332 TCTTTGATGTTCGAGCTTCATGT 58.682 39.130 16.58 0.00 0.00 3.21
2910 6166 4.389992 TCTTTGATGTTCGAGCTTCATGTC 59.610 41.667 16.58 0.17 0.00 3.06
2963 6277 3.275143 TCGTGTGTTTGGTTGAAGACAT 58.725 40.909 0.00 0.00 35.60 3.06
2966 6280 3.380004 GTGTGTTTGGTTGAAGACATGGA 59.620 43.478 0.00 0.00 35.60 3.41
3006 6320 6.540438 TTTACTCACCTCTTTCCGTATGAT 57.460 37.500 0.00 0.00 0.00 2.45
3023 6337 8.208224 TCCGTATGATTGGTGAACAAATATAGT 58.792 33.333 0.00 0.00 43.46 2.12
3138 6452 9.891828 CAACAAGAAGCACTTAACAAATATACA 57.108 29.630 0.00 0.00 37.03 2.29
3139 6453 9.893305 AACAAGAAGCACTTAACAAATATACAC 57.107 29.630 0.00 0.00 37.03 2.90
3143 6458 7.883311 AGAAGCACTTAACAAATATACACCACT 59.117 33.333 0.00 0.00 0.00 4.00
3146 6461 7.447238 AGCACTTAACAAATATACACCACTTGT 59.553 33.333 0.00 0.00 42.84 3.16
3180 6495 9.754382 ATCACATATAACAGATTTTTCCAATGC 57.246 29.630 0.00 0.00 0.00 3.56
3182 6497 7.914871 CACATATAACAGATTTTTCCAATGCGA 59.085 33.333 0.00 0.00 0.00 5.10
3230 6545 8.522830 ACATACTGTAGAAAAATCAACAATGGG 58.477 33.333 0.00 0.00 0.00 4.00
3233 6548 8.193953 ACTGTAGAAAAATCAACAATGGGAAT 57.806 30.769 0.00 0.00 0.00 3.01
3235 6550 9.573133 CTGTAGAAAAATCAACAATGGGAATAC 57.427 33.333 0.00 0.00 0.00 1.89
3254 6569 6.698766 GGAATACATTTGCATTCTCAACATCC 59.301 38.462 4.07 0.00 32.77 3.51
3261 6576 2.487762 GCATTCTCAACATCCCGTTCAA 59.512 45.455 0.00 0.00 34.86 2.69
3262 6577 3.129287 GCATTCTCAACATCCCGTTCAAT 59.871 43.478 0.00 0.00 34.86 2.57
3272 6589 5.556915 ACATCCCGTTCAATAGACTTTTCA 58.443 37.500 0.00 0.00 0.00 2.69
3288 6605 1.967319 TTCACGCTTTTCTTGAGCCT 58.033 45.000 0.00 0.00 36.81 4.58
3290 6607 0.239347 CACGCTTTTCTTGAGCCTGG 59.761 55.000 0.00 0.00 36.81 4.45
3313 6630 2.168106 CTGACATCAGGACCAGAGGAAG 59.832 54.545 5.47 0.00 40.20 3.46
3317 6634 3.395941 ACATCAGGACCAGAGGAAGTTTT 59.604 43.478 5.47 0.00 0.00 2.43
3318 6635 3.492102 TCAGGACCAGAGGAAGTTTTG 57.508 47.619 0.00 0.00 0.00 2.44
3319 6636 2.777692 TCAGGACCAGAGGAAGTTTTGT 59.222 45.455 0.00 0.00 0.00 2.83
3320 6637 3.202151 TCAGGACCAGAGGAAGTTTTGTT 59.798 43.478 0.00 0.00 0.00 2.83
3321 6638 3.316308 CAGGACCAGAGGAAGTTTTGTTG 59.684 47.826 0.00 0.00 0.00 3.33
3322 6639 2.623416 GGACCAGAGGAAGTTTTGTTGG 59.377 50.000 0.00 0.00 0.00 3.77
3323 6640 2.623416 GACCAGAGGAAGTTTTGTTGGG 59.377 50.000 0.00 0.00 0.00 4.12
3324 6641 1.963515 CCAGAGGAAGTTTTGTTGGGG 59.036 52.381 0.00 0.00 0.00 4.96
3325 6642 2.424234 CCAGAGGAAGTTTTGTTGGGGA 60.424 50.000 0.00 0.00 0.00 4.81
3326 6643 3.295973 CAGAGGAAGTTTTGTTGGGGAA 58.704 45.455 0.00 0.00 0.00 3.97
3327 6644 3.068165 CAGAGGAAGTTTTGTTGGGGAAC 59.932 47.826 0.00 0.00 0.00 3.62
3328 6645 2.028876 AGGAAGTTTTGTTGGGGAACG 58.971 47.619 0.00 0.00 0.00 3.95
3329 6646 1.752498 GGAAGTTTTGTTGGGGAACGT 59.248 47.619 0.00 0.00 0.00 3.99
3330 6647 2.950975 GGAAGTTTTGTTGGGGAACGTA 59.049 45.455 0.00 0.00 0.00 3.57
3331 6648 3.004002 GGAAGTTTTGTTGGGGAACGTAG 59.996 47.826 0.00 0.00 0.00 3.51
3333 6650 4.420522 AGTTTTGTTGGGGAACGTAGTA 57.579 40.909 0.00 0.00 45.00 1.82
3334 6651 4.779696 AGTTTTGTTGGGGAACGTAGTAA 58.220 39.130 0.00 0.00 45.00 2.24
3335 6652 5.379187 AGTTTTGTTGGGGAACGTAGTAAT 58.621 37.500 0.00 0.00 45.00 1.89
3336 6653 5.829391 AGTTTTGTTGGGGAACGTAGTAATT 59.171 36.000 0.00 0.00 45.00 1.40
3337 6654 6.321945 AGTTTTGTTGGGGAACGTAGTAATTT 59.678 34.615 0.00 0.00 45.00 1.82
3338 6655 5.945466 TTGTTGGGGAACGTAGTAATTTC 57.055 39.130 0.00 0.00 45.00 2.17
3339 6656 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
3340 6657 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
3341 6658 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
3342 6659 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
3343 6660 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.454858 AGGAGAGGAGGTTCTAATTGCA 58.545 45.455 0.00 0.00 0.00 4.08
1 2 4.195416 CAAGGAGAGGAGGTTCTAATTGC 58.805 47.826 0.00 0.00 0.00 3.56
2 3 4.195416 GCAAGGAGAGGAGGTTCTAATTG 58.805 47.826 0.00 0.00 0.00 2.32
5 6 2.902608 TGCAAGGAGAGGAGGTTCTAA 58.097 47.619 0.00 0.00 0.00 2.10
6 7 2.623418 TGCAAGGAGAGGAGGTTCTA 57.377 50.000 0.00 0.00 0.00 2.10
7 8 1.627834 CTTGCAAGGAGAGGAGGTTCT 59.372 52.381 19.14 0.00 0.00 3.01
8 9 1.349357 ACTTGCAAGGAGAGGAGGTTC 59.651 52.381 29.18 0.00 0.00 3.62
9 10 1.439543 ACTTGCAAGGAGAGGAGGTT 58.560 50.000 29.18 2.15 0.00 3.50
10 11 2.327325 TACTTGCAAGGAGAGGAGGT 57.673 50.000 29.18 9.23 0.00 3.85
11 12 3.339141 GTTTACTTGCAAGGAGAGGAGG 58.661 50.000 29.18 3.16 0.00 4.30
12 13 2.996621 CGTTTACTTGCAAGGAGAGGAG 59.003 50.000 29.18 11.04 0.00 3.69
13 14 2.367567 ACGTTTACTTGCAAGGAGAGGA 59.632 45.455 29.18 3.83 0.00 3.71
14 15 2.737252 GACGTTTACTTGCAAGGAGAGG 59.263 50.000 29.18 23.13 0.00 3.69
15 16 2.408704 CGACGTTTACTTGCAAGGAGAG 59.591 50.000 29.18 17.74 0.00 3.20
16 17 2.400399 CGACGTTTACTTGCAAGGAGA 58.600 47.619 29.18 14.96 0.00 3.71
17 18 1.136336 GCGACGTTTACTTGCAAGGAG 60.136 52.381 29.18 12.80 0.00 3.69
18 19 0.863144 GCGACGTTTACTTGCAAGGA 59.137 50.000 29.18 20.21 0.00 3.36
19 20 0.584396 TGCGACGTTTACTTGCAAGG 59.416 50.000 29.18 14.02 31.69 3.61
20 21 1.004398 TGTGCGACGTTTACTTGCAAG 60.004 47.619 24.84 24.84 37.30 4.01
21 22 1.007580 TGTGCGACGTTTACTTGCAA 58.992 45.000 0.00 0.00 37.30 4.08
22 23 1.007580 TTGTGCGACGTTTACTTGCA 58.992 45.000 0.00 0.00 0.00 4.08
23 24 2.309898 ATTGTGCGACGTTTACTTGC 57.690 45.000 0.00 0.00 0.00 4.01
24 25 2.400408 GCAATTGTGCGACGTTTACTTG 59.600 45.455 7.40 0.00 41.93 3.16
25 26 2.646250 GCAATTGTGCGACGTTTACTT 58.354 42.857 7.40 0.00 41.93 2.24
26 27 2.309898 GCAATTGTGCGACGTTTACT 57.690 45.000 7.40 0.00 41.93 2.24
37 38 1.661197 GGCCACGTGTGCAATTGTG 60.661 57.895 24.07 6.50 0.00 3.33
38 39 2.727544 GGCCACGTGTGCAATTGT 59.272 55.556 24.07 0.00 0.00 2.71
39 40 2.428902 CGGCCACGTGTGCAATTG 60.429 61.111 24.07 0.00 34.81 2.32
60 61 2.361230 GTGGTAGTTGGGCTGGCC 60.361 66.667 14.23 14.23 0.00 5.36
61 62 1.228429 TTGTGGTAGTTGGGCTGGC 60.228 57.895 0.00 0.00 0.00 4.85
62 63 0.110486 ACTTGTGGTAGTTGGGCTGG 59.890 55.000 0.00 0.00 0.00 4.85
63 64 1.238439 CACTTGTGGTAGTTGGGCTG 58.762 55.000 0.00 0.00 0.00 4.85
64 65 0.843984 ACACTTGTGGTAGTTGGGCT 59.156 50.000 5.72 0.00 0.00 5.19
65 66 1.687563 AACACTTGTGGTAGTTGGGC 58.312 50.000 5.72 0.00 0.00 5.36
66 67 4.401202 AGAAAAACACTTGTGGTAGTTGGG 59.599 41.667 5.72 0.00 0.00 4.12
67 68 5.124776 TGAGAAAAACACTTGTGGTAGTTGG 59.875 40.000 5.72 0.00 0.00 3.77
68 69 6.128007 ACTGAGAAAAACACTTGTGGTAGTTG 60.128 38.462 5.72 0.00 0.00 3.16
69 70 5.944007 ACTGAGAAAAACACTTGTGGTAGTT 59.056 36.000 5.72 0.00 0.00 2.24
70 71 5.497474 ACTGAGAAAAACACTTGTGGTAGT 58.503 37.500 5.72 0.00 0.00 2.73
71 72 6.436843 AACTGAGAAAAACACTTGTGGTAG 57.563 37.500 5.72 0.00 0.00 3.18
72 73 6.827586 AAACTGAGAAAAACACTTGTGGTA 57.172 33.333 5.72 0.00 0.00 3.25
73 74 5.722021 AAACTGAGAAAAACACTTGTGGT 57.278 34.783 5.72 0.00 0.00 4.16
74 75 7.973388 TCATAAAACTGAGAAAAACACTTGTGG 59.027 33.333 5.72 0.00 0.00 4.17
75 76 8.909708 TCATAAAACTGAGAAAAACACTTGTG 57.090 30.769 0.00 0.00 0.00 3.33
76 77 9.921637 TTTCATAAAACTGAGAAAAACACTTGT 57.078 25.926 0.00 0.00 0.00 3.16
78 79 9.087424 GCTTTCATAAAACTGAGAAAAACACTT 57.913 29.630 0.00 0.00 30.49 3.16
79 80 8.470002 AGCTTTCATAAAACTGAGAAAAACACT 58.530 29.630 0.00 0.00 30.49 3.55
80 81 8.634475 AGCTTTCATAAAACTGAGAAAAACAC 57.366 30.769 0.00 0.00 30.49 3.32
81 82 8.686334 AGAGCTTTCATAAAACTGAGAAAAACA 58.314 29.630 0.00 0.00 30.49 2.83
84 85 9.778741 TCTAGAGCTTTCATAAAACTGAGAAAA 57.221 29.630 0.00 0.00 30.49 2.29
85 86 9.950496 ATCTAGAGCTTTCATAAAACTGAGAAA 57.050 29.630 0.00 0.00 0.00 2.52
86 87 9.950496 AATCTAGAGCTTTCATAAAACTGAGAA 57.050 29.630 0.00 0.00 0.00 2.87
87 88 9.376075 CAATCTAGAGCTTTCATAAAACTGAGA 57.624 33.333 0.00 0.00 0.00 3.27
88 89 9.160496 ACAATCTAGAGCTTTCATAAAACTGAG 57.840 33.333 0.00 0.00 0.00 3.35
89 90 9.507329 AACAATCTAGAGCTTTCATAAAACTGA 57.493 29.630 0.00 0.00 0.00 3.41
92 93 9.899226 ACAAACAATCTAGAGCTTTCATAAAAC 57.101 29.630 0.00 0.00 0.00 2.43
94 95 9.897744 CAACAAACAATCTAGAGCTTTCATAAA 57.102 29.630 0.00 0.00 0.00 1.40
95 96 9.066892 ACAACAAACAATCTAGAGCTTTCATAA 57.933 29.630 0.00 0.00 0.00 1.90
96 97 8.621532 ACAACAAACAATCTAGAGCTTTCATA 57.378 30.769 0.00 0.00 0.00 2.15
97 98 7.516198 ACAACAAACAATCTAGAGCTTTCAT 57.484 32.000 0.00 0.00 0.00 2.57
98 99 6.942532 ACAACAAACAATCTAGAGCTTTCA 57.057 33.333 0.00 0.00 0.00 2.69
99 100 8.131731 AGAAACAACAAACAATCTAGAGCTTTC 58.868 33.333 0.00 0.00 0.00 2.62
100 101 8.000780 AGAAACAACAAACAATCTAGAGCTTT 57.999 30.769 0.00 0.00 0.00 3.51
101 102 7.573968 AGAAACAACAAACAATCTAGAGCTT 57.426 32.000 0.00 0.00 0.00 3.74
102 103 7.573968 AAGAAACAACAAACAATCTAGAGCT 57.426 32.000 0.00 0.00 0.00 4.09
103 104 8.634475 AAAAGAAACAACAAACAATCTAGAGC 57.366 30.769 0.00 0.00 0.00 4.09
128 129 5.725362 ACAACACGAAAATTCAGGGAAAAA 58.275 33.333 0.00 0.00 0.00 1.94
129 130 5.331876 ACAACACGAAAATTCAGGGAAAA 57.668 34.783 0.00 0.00 0.00 2.29
130 131 4.993029 ACAACACGAAAATTCAGGGAAA 57.007 36.364 0.00 0.00 0.00 3.13
131 132 4.993029 AACAACACGAAAATTCAGGGAA 57.007 36.364 0.00 0.00 0.00 3.97
132 133 4.993029 AAACAACACGAAAATTCAGGGA 57.007 36.364 0.00 0.00 0.00 4.20
133 134 5.348164 AGAAAACAACACGAAAATTCAGGG 58.652 37.500 0.00 0.00 0.00 4.45
134 135 6.885735 AAGAAAACAACACGAAAATTCAGG 57.114 33.333 0.00 0.00 0.00 3.86
135 136 9.072294 AGTAAAGAAAACAACACGAAAATTCAG 57.928 29.630 0.00 0.00 0.00 3.02
136 137 8.855279 CAGTAAAGAAAACAACACGAAAATTCA 58.145 29.630 0.00 0.00 0.00 2.57
137 138 9.068008 TCAGTAAAGAAAACAACACGAAAATTC 57.932 29.630 0.00 0.00 0.00 2.17
138 139 8.973835 TCAGTAAAGAAAACAACACGAAAATT 57.026 26.923 0.00 0.00 0.00 1.82
139 140 9.581099 AATCAGTAAAGAAAACAACACGAAAAT 57.419 25.926 0.00 0.00 0.00 1.82
140 141 8.973835 AATCAGTAAAGAAAACAACACGAAAA 57.026 26.923 0.00 0.00 0.00 2.29
141 142 8.973835 AAATCAGTAAAGAAAACAACACGAAA 57.026 26.923 0.00 0.00 0.00 3.46
142 143 8.455682 AGAAATCAGTAAAGAAAACAACACGAA 58.544 29.630 0.00 0.00 0.00 3.85
143 144 7.981142 AGAAATCAGTAAAGAAAACAACACGA 58.019 30.769 0.00 0.00 0.00 4.35
144 145 8.614994 AAGAAATCAGTAAAGAAAACAACACG 57.385 30.769 0.00 0.00 0.00 4.49
177 178 9.509956 TCCGAAAAGGATAGAAATAAACAAGAA 57.490 29.630 0.00 0.00 45.98 2.52
318 320 7.121315 GCTGTAGTGGAGAAGGTTTCAAAATAT 59.879 37.037 0.00 0.00 0.00 1.28
325 327 3.006967 TCAGCTGTAGTGGAGAAGGTTTC 59.993 47.826 14.67 0.00 0.00 2.78
328 330 2.310779 TCAGCTGTAGTGGAGAAGGT 57.689 50.000 14.67 0.00 0.00 3.50
360 362 3.123116 CGTTTCTTCTAGCCGGTTTTCTC 59.877 47.826 1.90 0.00 0.00 2.87
361 363 3.064931 CGTTTCTTCTAGCCGGTTTTCT 58.935 45.455 1.90 0.00 0.00 2.52
362 364 3.062042 TCGTTTCTTCTAGCCGGTTTTC 58.938 45.455 1.90 0.00 0.00 2.29
363 365 3.116079 TCGTTTCTTCTAGCCGGTTTT 57.884 42.857 1.90 0.00 0.00 2.43
364 366 2.804527 GTTCGTTTCTTCTAGCCGGTTT 59.195 45.455 1.90 0.00 0.00 3.27
365 367 2.410939 GTTCGTTTCTTCTAGCCGGTT 58.589 47.619 1.90 0.00 0.00 4.44
366 368 1.337541 GGTTCGTTTCTTCTAGCCGGT 60.338 52.381 1.90 0.00 0.00 5.28
367 369 1.337447 TGGTTCGTTTCTTCTAGCCGG 60.337 52.381 0.00 0.00 0.00 6.13
368 370 1.993370 CTGGTTCGTTTCTTCTAGCCG 59.007 52.381 0.00 0.00 0.00 5.52
369 371 2.347731 CCTGGTTCGTTTCTTCTAGCC 58.652 52.381 0.00 0.00 0.00 3.93
371 373 3.040147 TGCCTGGTTCGTTTCTTCTAG 57.960 47.619 0.00 0.00 0.00 2.43
373 375 2.158813 TCTTGCCTGGTTCGTTTCTTCT 60.159 45.455 0.00 0.00 0.00 2.85
374 376 2.218603 TCTTGCCTGGTTCGTTTCTTC 58.781 47.619 0.00 0.00 0.00 2.87
375 377 2.341846 TCTTGCCTGGTTCGTTTCTT 57.658 45.000 0.00 0.00 0.00 2.52
377 379 3.430333 TTTTCTTGCCTGGTTCGTTTC 57.570 42.857 0.00 0.00 0.00 2.78
380 382 1.535462 CGATTTTCTTGCCTGGTTCGT 59.465 47.619 0.00 0.00 0.00 3.85
383 385 3.492482 CCAAACGATTTTCTTGCCTGGTT 60.492 43.478 0.00 0.00 0.00 3.67
389 391 3.226347 CGACTCCAAACGATTTTCTTGC 58.774 45.455 0.00 0.00 0.00 4.01
401 403 2.021722 GCACTGTTGCGACTCCAAA 58.978 52.632 5.50 0.00 39.50 3.28
418 420 2.254464 GCCCAATACTGCGCTAGGC 61.254 63.158 9.73 6.54 43.96 3.93
419 421 0.882042 CTGCCCAATACTGCGCTAGG 60.882 60.000 9.73 1.02 0.00 3.02
510 512 3.845259 TTCGAGGAATCGGCCCGG 61.845 66.667 1.90 0.00 0.00 5.73
512 514 1.078708 TTGTTCGAGGAATCGGCCC 60.079 57.895 0.00 0.00 0.00 5.80
533 535 2.434884 CGACAATGGCGCTGGTCT 60.435 61.111 7.64 0.00 0.00 3.85
537 539 3.499737 GGACCGACAATGGCGCTG 61.500 66.667 1.37 0.00 0.00 5.18
551 553 3.959991 GAGCGGAGGCCAACTGGAC 62.960 68.421 5.01 0.00 46.16 4.02
552 554 3.706373 GAGCGGAGGCCAACTGGA 61.706 66.667 5.01 0.00 41.24 3.86
553 555 4.785453 GGAGCGGAGGCCAACTGG 62.785 72.222 5.01 0.00 41.24 4.00
554 556 4.785453 GGGAGCGGAGGCCAACTG 62.785 72.222 5.01 4.80 41.24 3.16
697 699 6.430451 GGACAAAAATATCGAGTTATGCCTG 58.570 40.000 0.00 0.00 0.00 4.85
709 711 2.096248 TGCACGGGGGACAAAAATATC 58.904 47.619 0.00 0.00 0.00 1.63
712 714 1.815817 GCTGCACGGGGGACAAAAAT 61.816 55.000 0.00 0.00 0.00 1.82
715 717 4.966787 GGCTGCACGGGGGACAAA 62.967 66.667 0.50 0.00 0.00 2.83
864 871 7.220875 CGTACATGAATATATAGCATTGCTCGT 59.779 37.037 15.81 8.03 40.44 4.18
921 947 0.319900 AGTGCTGCAGTTGTACGAGG 60.320 55.000 16.64 0.00 0.00 4.63
966 992 0.384309 CCAATAGCACTCGCGGTAGA 59.616 55.000 6.13 0.00 45.49 2.59
1389 1416 1.375140 CTGGAGCATGAGCACGTGT 60.375 57.895 18.38 3.69 45.49 4.49
2401 2431 4.526970 GAAACCAAGCCATTCCTCTCATA 58.473 43.478 0.00 0.00 0.00 2.15
2402 2432 3.359950 GAAACCAAGCCATTCCTCTCAT 58.640 45.455 0.00 0.00 0.00 2.90
2468 2507 0.984230 CCCTACAGCCTGGAGTTGAA 59.016 55.000 2.64 0.00 0.00 2.69
2485 2524 0.181350 CTGTTCATAGAGGGTGCCCC 59.819 60.000 3.17 2.16 45.90 5.80
2486 2525 0.912486 ACTGTTCATAGAGGGTGCCC 59.088 55.000 0.00 0.00 0.00 5.36
2487 2526 2.500098 TGTACTGTTCATAGAGGGTGCC 59.500 50.000 0.00 0.00 0.00 5.01
2488 2527 3.887621 TGTACTGTTCATAGAGGGTGC 57.112 47.619 0.00 0.00 0.00 5.01
2489 2528 6.986817 CCTTAATGTACTGTTCATAGAGGGTG 59.013 42.308 15.29 0.00 30.64 4.61
2490 2529 6.408206 GCCTTAATGTACTGTTCATAGAGGGT 60.408 42.308 20.32 3.17 32.77 4.34
2491 2530 5.992217 GCCTTAATGTACTGTTCATAGAGGG 59.008 44.000 20.32 13.82 32.77 4.30
2492 2531 5.992217 GGCCTTAATGTACTGTTCATAGAGG 59.008 44.000 17.25 17.25 34.02 3.69
2493 2532 5.692204 CGGCCTTAATGTACTGTTCATAGAG 59.308 44.000 0.00 2.61 0.00 2.43
2494 2533 5.128171 ACGGCCTTAATGTACTGTTCATAGA 59.872 40.000 0.00 0.00 0.00 1.98
2495 2534 5.234329 CACGGCCTTAATGTACTGTTCATAG 59.766 44.000 0.00 0.00 0.00 2.23
2496 2535 5.113383 CACGGCCTTAATGTACTGTTCATA 58.887 41.667 0.00 0.00 0.00 2.15
2497 2536 3.938963 CACGGCCTTAATGTACTGTTCAT 59.061 43.478 0.00 0.00 0.00 2.57
2498 2537 3.244284 ACACGGCCTTAATGTACTGTTCA 60.244 43.478 0.00 0.00 0.00 3.18
2499 2538 3.332034 ACACGGCCTTAATGTACTGTTC 58.668 45.455 0.00 0.00 0.00 3.18
2500 2539 3.412237 ACACGGCCTTAATGTACTGTT 57.588 42.857 0.00 0.00 0.00 3.16
2501 2540 3.332034 GAACACGGCCTTAATGTACTGT 58.668 45.455 0.00 0.00 0.00 3.55
2502 2541 2.347452 CGAACACGGCCTTAATGTACTG 59.653 50.000 0.00 0.00 0.00 2.74
2503 2542 2.613691 CGAACACGGCCTTAATGTACT 58.386 47.619 0.00 0.00 0.00 2.73
2504 2543 1.662122 CCGAACACGGCCTTAATGTAC 59.338 52.381 0.00 0.00 40.29 2.90
2505 2544 1.549620 TCCGAACACGGCCTTAATGTA 59.450 47.619 0.00 0.00 45.52 2.29
2506 2545 0.322322 TCCGAACACGGCCTTAATGT 59.678 50.000 0.00 0.00 45.52 2.71
2507 2546 1.663695 ATCCGAACACGGCCTTAATG 58.336 50.000 0.00 0.00 45.52 1.90
2508 2547 2.285977 GAATCCGAACACGGCCTTAAT 58.714 47.619 0.00 0.00 45.52 1.40
2509 2548 1.676615 GGAATCCGAACACGGCCTTAA 60.677 52.381 0.00 0.00 45.52 1.85
2510 2549 0.108041 GGAATCCGAACACGGCCTTA 60.108 55.000 0.00 0.00 45.52 2.69
2511 2550 1.376812 GGAATCCGAACACGGCCTT 60.377 57.895 0.00 0.00 45.52 4.35
2512 2551 2.267961 GGAATCCGAACACGGCCT 59.732 61.111 0.00 0.00 45.52 5.19
2513 2552 2.822701 GGGAATCCGAACACGGCC 60.823 66.667 3.67 0.00 45.52 6.13
2514 2553 1.814169 GAGGGAATCCGAACACGGC 60.814 63.158 3.67 0.00 45.52 5.68
2516 2555 4.515404 GGAGGGAATCCGAACACG 57.485 61.111 0.00 0.00 38.67 4.49
2523 2562 2.506472 GTGGAGCGGAGGGAATCC 59.494 66.667 0.00 0.00 45.64 3.01
2524 2563 2.107141 CGTGGAGCGGAGGGAATC 59.893 66.667 0.00 0.00 36.85 2.52
2525 2564 4.162690 GCGTGGAGCGGAGGGAAT 62.163 66.667 0.00 0.00 41.69 3.01
2545 2584 4.838152 TGGATTGCCGCTCCGCTC 62.838 66.667 0.00 0.00 35.41 5.03
2546 2585 4.845580 CTGGATTGCCGCTCCGCT 62.846 66.667 0.00 0.00 35.41 5.52
2548 2587 0.742990 TTAACTGGATTGCCGCTCCG 60.743 55.000 0.00 0.00 35.41 4.63
2549 2588 1.680338 ATTAACTGGATTGCCGCTCC 58.320 50.000 0.00 0.00 36.79 4.70
2550 2589 4.598062 GTTAATTAACTGGATTGCCGCTC 58.402 43.478 19.07 0.00 36.79 5.03
2551 2590 3.064820 CGTTAATTAACTGGATTGCCGCT 59.935 43.478 22.57 0.00 36.79 5.52
2552 2591 3.359654 CGTTAATTAACTGGATTGCCGC 58.640 45.455 22.57 0.00 36.79 6.53
2553 2592 3.359654 GCGTTAATTAACTGGATTGCCG 58.640 45.455 22.57 9.89 36.79 5.69
2554 2593 3.129638 TGGCGTTAATTAACTGGATTGCC 59.870 43.478 24.37 24.37 36.44 4.52
2555 2594 4.364415 TGGCGTTAATTAACTGGATTGC 57.636 40.909 22.57 17.20 34.12 3.56
2556 2595 6.130298 TCATGGCGTTAATTAACTGGATTG 57.870 37.500 22.57 14.38 34.12 2.67
2557 2596 6.959639 ATCATGGCGTTAATTAACTGGATT 57.040 33.333 22.57 4.80 34.12 3.01
2558 2597 6.959639 AATCATGGCGTTAATTAACTGGAT 57.040 33.333 22.57 15.05 34.12 3.41
2559 2598 6.559810 CAAATCATGGCGTTAATTAACTGGA 58.440 36.000 22.57 13.79 34.12 3.86
2560 2599 5.231991 GCAAATCATGGCGTTAATTAACTGG 59.768 40.000 22.57 11.58 34.12 4.00
2561 2600 6.259743 GCAAATCATGGCGTTAATTAACTG 57.740 37.500 22.57 17.24 34.12 3.16
2573 2612 1.067635 ACCAACTTCGCAAATCATGGC 60.068 47.619 0.00 0.00 0.00 4.40
2574 2613 3.302365 AACCAACTTCGCAAATCATGG 57.698 42.857 0.00 0.00 0.00 3.66
2575 2614 5.118510 GGTTTAACCAACTTCGCAAATCATG 59.881 40.000 9.56 0.00 38.42 3.07
2576 2615 5.227152 GGTTTAACCAACTTCGCAAATCAT 58.773 37.500 9.56 0.00 38.42 2.45
2577 2616 4.500035 GGGTTTAACCAACTTCGCAAATCA 60.500 41.667 16.58 0.00 41.02 2.57
2578 2617 3.985279 GGGTTTAACCAACTTCGCAAATC 59.015 43.478 16.58 0.00 41.02 2.17
2579 2618 3.243941 GGGGTTTAACCAACTTCGCAAAT 60.244 43.478 16.58 0.00 41.02 2.32
2580 2619 2.101082 GGGGTTTAACCAACTTCGCAAA 59.899 45.455 16.58 0.00 41.02 3.68
2581 2620 1.682323 GGGGTTTAACCAACTTCGCAA 59.318 47.619 16.58 0.00 41.02 4.85
2582 2621 1.320507 GGGGTTTAACCAACTTCGCA 58.679 50.000 16.58 0.00 41.02 5.10
2583 2622 0.239082 CGGGGTTTAACCAACTTCGC 59.761 55.000 16.58 0.00 41.02 4.70
2584 2623 0.239082 GCGGGGTTTAACCAACTTCG 59.761 55.000 16.58 11.44 41.02 3.79
2585 2624 1.538512 GAGCGGGGTTTAACCAACTTC 59.461 52.381 16.58 4.56 41.02 3.01
2586 2625 1.612676 GAGCGGGGTTTAACCAACTT 58.387 50.000 16.58 0.00 41.02 2.66
2587 2626 0.251033 GGAGCGGGGTTTAACCAACT 60.251 55.000 16.58 9.28 41.02 3.16
2588 2627 1.579964 CGGAGCGGGGTTTAACCAAC 61.580 60.000 16.58 7.19 41.02 3.77
2589 2628 1.302671 CGGAGCGGGGTTTAACCAA 60.303 57.895 16.58 0.00 41.02 3.67
2590 2629 2.348243 CGGAGCGGGGTTTAACCA 59.652 61.111 16.58 0.00 41.02 3.67
2591 2630 2.437180 CCGGAGCGGGGTTTAACC 60.437 66.667 5.40 5.40 44.15 2.85
2618 2657 2.989253 TTCGGCAGTCCTCGCAGA 60.989 61.111 0.00 0.00 0.00 4.26
2619 2658 2.811317 GTTCGGCAGTCCTCGCAG 60.811 66.667 0.00 0.00 0.00 5.18
2620 2659 4.717629 CGTTCGGCAGTCCTCGCA 62.718 66.667 0.00 0.00 0.00 5.10
2645 2684 8.655651 TTGCGATTTTGTTTTCTATCCTTTTT 57.344 26.923 0.00 0.00 0.00 1.94
2646 2685 8.655651 TTTGCGATTTTGTTTTCTATCCTTTT 57.344 26.923 0.00 0.00 0.00 2.27
2647 2686 8.655651 TTTTGCGATTTTGTTTTCTATCCTTT 57.344 26.923 0.00 0.00 0.00 3.11
2648 2687 8.831715 ATTTTGCGATTTTGTTTTCTATCCTT 57.168 26.923 0.00 0.00 0.00 3.36
2649 2688 9.353999 GTATTTTGCGATTTTGTTTTCTATCCT 57.646 29.630 0.00 0.00 0.00 3.24
2650 2689 9.353999 AGTATTTTGCGATTTTGTTTTCTATCC 57.646 29.630 0.00 0.00 0.00 2.59
2652 2691 9.906660 TCAGTATTTTGCGATTTTGTTTTCTAT 57.093 25.926 0.00 0.00 0.00 1.98
2653 2692 9.737427 TTCAGTATTTTGCGATTTTGTTTTCTA 57.263 25.926 0.00 0.00 0.00 2.10
2654 2693 8.641499 TTCAGTATTTTGCGATTTTGTTTTCT 57.359 26.923 0.00 0.00 0.00 2.52
2655 2694 9.142993 GTTTCAGTATTTTGCGATTTTGTTTTC 57.857 29.630 0.00 0.00 0.00 2.29
2656 2695 8.878769 AGTTTCAGTATTTTGCGATTTTGTTTT 58.121 25.926 0.00 0.00 0.00 2.43
2657 2696 8.419076 AGTTTCAGTATTTTGCGATTTTGTTT 57.581 26.923 0.00 0.00 0.00 2.83
2658 2697 8.419076 AAGTTTCAGTATTTTGCGATTTTGTT 57.581 26.923 0.00 0.00 0.00 2.83
2659 2698 8.327429 CAAAGTTTCAGTATTTTGCGATTTTGT 58.673 29.630 0.00 0.00 0.00 2.83
2660 2699 7.318674 GCAAAGTTTCAGTATTTTGCGATTTTG 59.681 33.333 5.22 0.00 43.78 2.44
2661 2700 7.344441 GCAAAGTTTCAGTATTTTGCGATTTT 58.656 30.769 5.22 0.00 43.78 1.82
2662 2701 6.876804 GCAAAGTTTCAGTATTTTGCGATTT 58.123 32.000 5.22 0.00 43.78 2.17
2663 2702 6.452244 GCAAAGTTTCAGTATTTTGCGATT 57.548 33.333 5.22 0.00 43.78 3.34
2668 2707 6.636447 TGATGTCGCAAAGTTTCAGTATTTTG 59.364 34.615 0.00 0.00 34.51 2.44
2669 2708 6.734137 TGATGTCGCAAAGTTTCAGTATTTT 58.266 32.000 0.00 0.00 0.00 1.82
2670 2709 6.312399 TGATGTCGCAAAGTTTCAGTATTT 57.688 33.333 0.00 0.00 0.00 1.40
2671 2710 5.940192 TGATGTCGCAAAGTTTCAGTATT 57.060 34.783 0.00 0.00 0.00 1.89
2672 2711 5.940192 TTGATGTCGCAAAGTTTCAGTAT 57.060 34.783 0.00 0.00 0.00 2.12
2673 2712 5.743026 TTTGATGTCGCAAAGTTTCAGTA 57.257 34.783 0.00 0.00 33.16 2.74
2674 2713 4.630894 TTTGATGTCGCAAAGTTTCAGT 57.369 36.364 0.00 0.00 33.16 3.41
2678 2717 5.713025 AGCATATTTGATGTCGCAAAGTTT 58.287 33.333 0.00 0.00 40.68 2.66
2685 2724 7.740519 AAAGTTTAAGCATATTTGATGTCGC 57.259 32.000 0.00 0.00 0.00 5.19
2699 2738 7.919091 ACTTGTAAGCACCTTTAAAGTTTAAGC 59.081 33.333 14.03 8.31 29.69 3.09
2700 2739 9.797556 AACTTGTAAGCACCTTTAAAGTTTAAG 57.202 29.630 14.03 10.96 35.94 1.85
2711 5966 5.852282 ACATGAAAACTTGTAAGCACCTT 57.148 34.783 0.00 0.00 0.00 3.50
2771 6026 3.094572 CTCACAATTTTGAGCCCTGGAT 58.905 45.455 8.60 0.00 36.83 3.41
2788 6043 4.552166 TTTCACTGCTAAAAGTGCTCAC 57.448 40.909 0.00 0.00 45.93 3.51
2804 6060 5.705441 TGTACCCATGAGTTTCTGATTTCAC 59.295 40.000 0.00 0.00 0.00 3.18
2931 6245 6.325919 ACCAAACACACGAACATAATCAAT 57.674 33.333 0.00 0.00 0.00 2.57
2943 6257 3.362295 CATGTCTTCAACCAAACACACG 58.638 45.455 0.00 0.00 0.00 4.49
2997 6311 8.208224 ACTATATTTGTTCACCAATCATACGGA 58.792 33.333 0.00 0.00 31.81 4.69
3006 6320 7.235079 TGGAAGGAACTATATTTGTTCACCAA 58.765 34.615 17.35 9.23 43.84 3.67
3137 6451 8.837788 ATATGTGATGTGATATACAAGTGGTG 57.162 34.615 0.00 0.00 43.77 4.17
3155 6470 7.914871 CGCATTGGAAAAATCTGTTATATGTGA 59.085 33.333 0.00 0.00 0.00 3.58
3230 6545 6.698766 GGGATGTTGAGAATGCAAATGTATTC 59.301 38.462 14.11 14.11 44.17 1.75
3233 6548 4.096231 CGGGATGTTGAGAATGCAAATGTA 59.904 41.667 0.00 0.00 0.00 2.29
3235 6550 3.119388 ACGGGATGTTGAGAATGCAAATG 60.119 43.478 0.00 0.00 0.00 2.32
3240 6555 2.083774 TGAACGGGATGTTGAGAATGC 58.916 47.619 0.00 0.00 42.09 3.56
3254 6569 3.432252 AGCGTGAAAAGTCTATTGAACGG 59.568 43.478 0.00 0.00 0.00 4.44
3261 6576 6.566753 GCTCAAGAAAAGCGTGAAAAGTCTAT 60.567 38.462 0.00 0.00 34.59 1.98
3262 6577 5.277345 GCTCAAGAAAAGCGTGAAAAGTCTA 60.277 40.000 0.00 0.00 34.59 2.59
3272 6589 0.179018 ACCAGGCTCAAGAAAAGCGT 60.179 50.000 0.00 0.00 40.77 5.07
3288 6605 1.203174 TCTGGTCCTGATGTCAGACCA 60.203 52.381 21.86 21.86 46.59 4.02
3290 6607 1.480137 CCTCTGGTCCTGATGTCAGAC 59.520 57.143 11.47 7.58 46.59 3.51
3305 6622 2.944129 TCCCCAACAAAACTTCCTCTG 58.056 47.619 0.00 0.00 0.00 3.35
3313 6630 5.694231 ATTACTACGTTCCCCAACAAAAC 57.306 39.130 0.00 0.00 32.14 2.43
3317 6634 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
3318 6635 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
3319 6636 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
3320 6637 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.