Multiple sequence alignment - TraesCS5A01G137300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G137300 chr5A 100.000 4469 0 0 1 4469 309306417 309310885 0.000000e+00 8253
1 TraesCS5A01G137300 chr5D 95.067 4196 177 18 287 4469 242859855 242855677 0.000000e+00 6575
2 TraesCS5A01G137300 chr5B 95.610 3872 129 15 624 4469 255666427 255670283 0.000000e+00 6170
3 TraesCS5A01G137300 chr5B 89.558 249 21 4 1 245 577299820 577300067 1.210000e-80 311
4 TraesCS5A01G137300 chr3D 89.453 256 22 4 1 252 598899795 598899541 7.210000e-83 318
5 TraesCS5A01G137300 chr1D 89.641 251 22 3 1 247 38292988 38293238 2.590000e-82 316
6 TraesCS5A01G137300 chr1D 89.062 256 20 7 1 250 148666026 148665773 1.210000e-80 311
7 TraesCS5A01G137300 chr7B 89.558 249 21 4 1 245 275633237 275632990 1.210000e-80 311
8 TraesCS5A01G137300 chr4A 89.558 249 20 5 1 245 729004455 729004701 1.210000e-80 311
9 TraesCS5A01G137300 chr6B 88.976 254 23 4 1 250 676735700 676735448 4.340000e-80 309
10 TraesCS5A01G137300 chr2D 89.243 251 22 3 1 247 8330596 8330347 4.340000e-80 309
11 TraesCS5A01G137300 chr3B 87.547 265 26 6 1 260 805372271 805372533 2.610000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G137300 chr5A 309306417 309310885 4468 False 8253 8253 100.000 1 4469 1 chr5A.!!$F1 4468
1 TraesCS5A01G137300 chr5D 242855677 242859855 4178 True 6575 6575 95.067 287 4469 1 chr5D.!!$R1 4182
2 TraesCS5A01G137300 chr5B 255666427 255670283 3856 False 6170 6170 95.610 624 4469 1 chr5B.!!$F1 3845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.035056 CATTTGGAAGGAGGCGAGGT 60.035 55.000 0.0 0.0 0.00 3.85 F
162 163 0.038526 GCGAGGTCAAAGGACGAAGA 60.039 55.000 0.0 0.0 45.28 2.87 F
295 296 0.166597 CACACACACATGACCGATGC 59.833 55.000 0.0 0.0 35.15 3.91 F
2034 2043 0.320771 GCTGTGACCCTGATGTCGTT 60.321 55.000 0.0 0.0 38.11 3.85 F
2559 2568 1.609580 GGTGTCCGCCTTGATGTTGTA 60.610 52.381 0.0 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 1769 0.394352 CAACAGTCCCCTACCCATGC 60.394 60.000 0.0 0.0 0.00 4.06 R
2065 2074 1.073199 CTTGAACACGCCCTTCCCT 59.927 57.895 0.0 0.0 0.00 4.20 R
2206 2215 3.701664 ACCCTCTTTCCATCATTTCCAC 58.298 45.455 0.0 0.0 0.00 4.02 R
3216 3225 1.199558 GTGACAGAGTCCGGTGAGTAC 59.800 57.143 0.0 0.0 0.00 2.73 R
4387 4416 1.009829 CTGATACCCTTGCAACTCGC 58.990 55.000 0.0 0.0 42.89 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.137490 CATACGAATGCCATGATATCTTTGT 57.863 36.000 3.98 1.80 0.00 2.83
27 28 5.679734 ACGAATGCCATGATATCTTTGTC 57.320 39.130 3.98 0.00 0.00 3.18
28 29 4.516698 ACGAATGCCATGATATCTTTGTCC 59.483 41.667 3.98 0.00 0.00 4.02
29 30 4.758674 CGAATGCCATGATATCTTTGTCCT 59.241 41.667 3.98 0.00 0.00 3.85
30 31 5.334646 CGAATGCCATGATATCTTTGTCCTG 60.335 44.000 3.98 0.00 0.00 3.86
31 32 4.776435 TGCCATGATATCTTTGTCCTGA 57.224 40.909 3.98 0.00 0.00 3.86
32 33 5.114764 TGCCATGATATCTTTGTCCTGAA 57.885 39.130 3.98 0.00 0.00 3.02
33 34 5.128205 TGCCATGATATCTTTGTCCTGAAG 58.872 41.667 3.98 0.00 0.00 3.02
34 35 5.104402 TGCCATGATATCTTTGTCCTGAAGA 60.104 40.000 3.98 0.00 37.52 2.87
35 36 5.469421 GCCATGATATCTTTGTCCTGAAGAG 59.531 44.000 3.98 0.00 36.64 2.85
36 37 6.687393 GCCATGATATCTTTGTCCTGAAGAGA 60.687 42.308 3.98 0.00 36.64 3.10
37 38 7.278135 CCATGATATCTTTGTCCTGAAGAGAA 58.722 38.462 3.98 0.00 36.64 2.87
38 39 7.772292 CCATGATATCTTTGTCCTGAAGAGAAA 59.228 37.037 3.98 0.00 36.64 2.52
39 40 9.339850 CATGATATCTTTGTCCTGAAGAGAAAT 57.660 33.333 3.98 0.00 37.15 2.17
40 41 8.954950 TGATATCTTTGTCCTGAAGAGAAATC 57.045 34.615 3.98 0.00 37.15 2.17
41 42 8.542926 TGATATCTTTGTCCTGAAGAGAAATCA 58.457 33.333 3.98 0.00 37.15 2.57
42 43 9.558396 GATATCTTTGTCCTGAAGAGAAATCAT 57.442 33.333 0.00 0.00 37.15 2.45
43 44 7.627298 ATCTTTGTCCTGAAGAGAAATCATG 57.373 36.000 0.00 0.00 37.15 3.07
44 45 6.537355 TCTTTGTCCTGAAGAGAAATCATGT 58.463 36.000 0.00 0.00 37.15 3.21
45 46 6.429078 TCTTTGTCCTGAAGAGAAATCATGTG 59.571 38.462 0.00 0.00 37.15 3.21
46 47 4.582869 TGTCCTGAAGAGAAATCATGTGG 58.417 43.478 0.00 0.00 0.00 4.17
47 48 4.042062 TGTCCTGAAGAGAAATCATGTGGT 59.958 41.667 0.00 0.00 0.00 4.16
48 49 5.248248 TGTCCTGAAGAGAAATCATGTGGTA 59.752 40.000 0.00 0.00 0.00 3.25
49 50 5.814705 GTCCTGAAGAGAAATCATGTGGTAG 59.185 44.000 0.00 0.00 0.00 3.18
50 51 5.721480 TCCTGAAGAGAAATCATGTGGTAGA 59.279 40.000 0.00 0.00 0.00 2.59
51 52 5.814705 CCTGAAGAGAAATCATGTGGTAGAC 59.185 44.000 0.00 0.00 0.00 2.59
52 53 5.410924 TGAAGAGAAATCATGTGGTAGACG 58.589 41.667 0.00 0.00 0.00 4.18
53 54 5.047306 TGAAGAGAAATCATGTGGTAGACGT 60.047 40.000 0.00 0.00 0.00 4.34
54 55 4.748892 AGAGAAATCATGTGGTAGACGTG 58.251 43.478 0.00 0.00 42.28 4.49
60 61 4.174411 TCATGTGGTAGACGTGAAGAAG 57.826 45.455 0.00 0.00 45.82 2.85
61 62 3.572682 TCATGTGGTAGACGTGAAGAAGT 59.427 43.478 0.00 0.00 45.82 3.01
62 63 3.364889 TGTGGTAGACGTGAAGAAGTG 57.635 47.619 0.00 0.00 0.00 3.16
63 64 2.035449 TGTGGTAGACGTGAAGAAGTGG 59.965 50.000 0.00 0.00 0.00 4.00
64 65 1.000506 TGGTAGACGTGAAGAAGTGGC 59.999 52.381 0.00 0.00 0.00 5.01
65 66 1.000506 GGTAGACGTGAAGAAGTGGCA 59.999 52.381 0.00 0.00 0.00 4.92
66 67 2.329379 GTAGACGTGAAGAAGTGGCAG 58.671 52.381 0.00 0.00 0.00 4.85
67 68 0.753262 AGACGTGAAGAAGTGGCAGT 59.247 50.000 0.00 0.00 0.00 4.40
68 69 1.139058 AGACGTGAAGAAGTGGCAGTT 59.861 47.619 7.41 7.41 0.00 3.16
69 70 1.940613 GACGTGAAGAAGTGGCAGTTT 59.059 47.619 9.30 0.00 0.00 2.66
70 71 2.354821 GACGTGAAGAAGTGGCAGTTTT 59.645 45.455 9.30 0.00 0.00 2.43
71 72 2.354821 ACGTGAAGAAGTGGCAGTTTTC 59.645 45.455 9.30 13.92 0.00 2.29
72 73 2.614057 CGTGAAGAAGTGGCAGTTTTCT 59.386 45.455 20.41 13.62 32.80 2.52
73 74 3.303395 CGTGAAGAAGTGGCAGTTTTCTC 60.303 47.826 20.41 17.55 31.16 2.87
74 75 3.627577 GTGAAGAAGTGGCAGTTTTCTCA 59.372 43.478 20.41 15.49 31.16 3.27
75 76 3.879295 TGAAGAAGTGGCAGTTTTCTCAG 59.121 43.478 20.41 0.00 31.16 3.35
76 77 3.845781 AGAAGTGGCAGTTTTCTCAGA 57.154 42.857 9.30 0.00 0.00 3.27
77 78 3.737850 AGAAGTGGCAGTTTTCTCAGAG 58.262 45.455 9.30 0.00 0.00 3.35
78 79 2.557920 AGTGGCAGTTTTCTCAGAGG 57.442 50.000 0.00 0.00 0.00 3.69
79 80 1.771255 AGTGGCAGTTTTCTCAGAGGT 59.229 47.619 0.00 0.00 0.00 3.85
80 81 1.876156 GTGGCAGTTTTCTCAGAGGTG 59.124 52.381 0.00 0.00 0.00 4.00
81 82 1.202806 TGGCAGTTTTCTCAGAGGTGG 60.203 52.381 0.00 0.00 0.00 4.61
82 83 1.528129 GCAGTTTTCTCAGAGGTGGG 58.472 55.000 0.00 0.00 0.00 4.61
83 84 1.528129 CAGTTTTCTCAGAGGTGGGC 58.472 55.000 0.00 0.00 0.00 5.36
84 85 1.140312 AGTTTTCTCAGAGGTGGGCA 58.860 50.000 0.00 0.00 0.00 5.36
85 86 1.202818 AGTTTTCTCAGAGGTGGGCAC 60.203 52.381 0.00 0.00 0.00 5.01
86 87 0.250295 TTTTCTCAGAGGTGGGCACG 60.250 55.000 0.00 0.00 0.00 5.34
87 88 2.731691 TTTCTCAGAGGTGGGCACGC 62.732 60.000 0.00 0.00 0.00 5.34
92 93 4.148825 GAGGTGGGCACGCGAGAT 62.149 66.667 15.93 0.00 0.00 2.75
93 94 4.457496 AGGTGGGCACGCGAGATG 62.457 66.667 15.93 0.69 0.00 2.90
94 95 4.760047 GGTGGGCACGCGAGATGT 62.760 66.667 15.93 0.00 0.00 3.06
95 96 3.490759 GTGGGCACGCGAGATGTG 61.491 66.667 15.93 0.00 40.32 3.21
103 104 2.184322 GCGAGATGTGCGGGAGAA 59.816 61.111 0.00 0.00 0.00 2.87
104 105 1.880340 GCGAGATGTGCGGGAGAAG 60.880 63.158 0.00 0.00 0.00 2.85
105 106 1.880340 CGAGATGTGCGGGAGAAGC 60.880 63.158 0.00 0.00 0.00 3.86
106 107 1.219124 GAGATGTGCGGGAGAAGCA 59.781 57.895 0.00 0.00 42.99 3.91
107 108 0.809241 GAGATGTGCGGGAGAAGCAG 60.809 60.000 0.00 0.00 46.10 4.24
108 109 1.817099 GATGTGCGGGAGAAGCAGG 60.817 63.158 0.00 0.00 46.10 4.85
109 110 2.527951 GATGTGCGGGAGAAGCAGGT 62.528 60.000 0.00 0.00 46.10 4.00
110 111 2.032681 GTGCGGGAGAAGCAGGTT 59.967 61.111 0.00 0.00 46.10 3.50
111 112 1.600916 GTGCGGGAGAAGCAGGTTT 60.601 57.895 0.00 0.00 46.10 3.27
112 113 1.302511 TGCGGGAGAAGCAGGTTTC 60.303 57.895 0.00 0.00 40.01 2.78
113 114 1.003233 GCGGGAGAAGCAGGTTTCT 60.003 57.895 0.00 0.00 40.02 2.52
119 120 2.447244 AGAAGCAGGTTTCTCAGACG 57.553 50.000 0.00 0.00 31.97 4.18
120 121 1.964223 AGAAGCAGGTTTCTCAGACGA 59.036 47.619 0.00 0.00 31.97 4.20
121 122 2.029470 AGAAGCAGGTTTCTCAGACGAG 60.029 50.000 0.00 0.00 40.98 4.18
122 123 1.333177 AGCAGGTTTCTCAGACGAGT 58.667 50.000 0.00 0.00 40.44 4.18
123 124 1.271102 AGCAGGTTTCTCAGACGAGTC 59.729 52.381 0.00 0.00 40.44 3.36
124 125 1.271102 GCAGGTTTCTCAGACGAGTCT 59.729 52.381 0.00 0.00 40.44 3.24
133 134 3.383162 AGACGAGTCTGGGTCCATT 57.617 52.632 4.78 0.00 38.75 3.16
134 135 1.645710 AGACGAGTCTGGGTCCATTT 58.354 50.000 4.78 0.00 38.75 2.32
135 136 1.276421 AGACGAGTCTGGGTCCATTTG 59.724 52.381 4.78 0.00 38.75 2.32
136 137 0.324943 ACGAGTCTGGGTCCATTTGG 59.675 55.000 0.00 0.00 0.00 3.28
137 138 0.613260 CGAGTCTGGGTCCATTTGGA 59.387 55.000 0.00 0.00 43.08 3.53
146 147 2.382526 TCCATTTGGAAGGAGGCGA 58.617 52.632 0.00 0.00 42.18 5.54
147 148 0.253044 TCCATTTGGAAGGAGGCGAG 59.747 55.000 0.00 0.00 42.18 5.03
148 149 0.749454 CCATTTGGAAGGAGGCGAGG 60.749 60.000 0.00 0.00 37.39 4.63
149 150 0.035056 CATTTGGAAGGAGGCGAGGT 60.035 55.000 0.00 0.00 0.00 3.85
150 151 0.253327 ATTTGGAAGGAGGCGAGGTC 59.747 55.000 0.00 0.00 0.00 3.85
151 152 1.125093 TTTGGAAGGAGGCGAGGTCA 61.125 55.000 0.00 0.00 0.00 4.02
152 153 1.125093 TTGGAAGGAGGCGAGGTCAA 61.125 55.000 0.00 0.00 0.00 3.18
153 154 1.125093 TGGAAGGAGGCGAGGTCAAA 61.125 55.000 0.00 0.00 0.00 2.69
154 155 0.391793 GGAAGGAGGCGAGGTCAAAG 60.392 60.000 0.00 0.00 0.00 2.77
155 156 0.391793 GAAGGAGGCGAGGTCAAAGG 60.392 60.000 0.00 0.00 0.00 3.11
156 157 0.836400 AAGGAGGCGAGGTCAAAGGA 60.836 55.000 0.00 0.00 0.00 3.36
157 158 1.079057 GGAGGCGAGGTCAAAGGAC 60.079 63.158 0.00 0.00 43.55 3.85
158 159 1.446272 GAGGCGAGGTCAAAGGACG 60.446 63.158 0.00 0.00 45.28 4.79
159 160 1.874345 GAGGCGAGGTCAAAGGACGA 61.874 60.000 0.00 0.00 45.28 4.20
160 161 1.005394 GGCGAGGTCAAAGGACGAA 60.005 57.895 0.00 0.00 45.28 3.85
161 162 1.014564 GGCGAGGTCAAAGGACGAAG 61.015 60.000 0.00 0.00 45.28 3.79
162 163 0.038526 GCGAGGTCAAAGGACGAAGA 60.039 55.000 0.00 0.00 45.28 2.87
163 164 1.604693 GCGAGGTCAAAGGACGAAGAA 60.605 52.381 0.00 0.00 45.28 2.52
164 165 2.931320 GCGAGGTCAAAGGACGAAGAAT 60.931 50.000 0.00 0.00 45.28 2.40
165 166 2.924290 CGAGGTCAAAGGACGAAGAATC 59.076 50.000 0.00 0.00 45.28 2.52
181 182 7.916128 CGAAGAATCGTGTGATACTCTAAAT 57.084 36.000 0.00 0.00 44.06 1.40
182 183 7.768812 CGAAGAATCGTGTGATACTCTAAATG 58.231 38.462 0.00 0.00 44.06 2.32
183 184 7.644157 CGAAGAATCGTGTGATACTCTAAATGA 59.356 37.037 0.00 0.00 44.06 2.57
184 185 9.302345 GAAGAATCGTGTGATACTCTAAATGAA 57.698 33.333 0.00 0.00 33.40 2.57
185 186 9.653287 AAGAATCGTGTGATACTCTAAATGAAA 57.347 29.630 0.00 0.00 33.40 2.69
186 187 9.088512 AGAATCGTGTGATACTCTAAATGAAAC 57.911 33.333 0.00 0.00 33.40 2.78
187 188 8.771920 AATCGTGTGATACTCTAAATGAAACA 57.228 30.769 0.00 0.00 33.40 2.83
188 189 8.771920 ATCGTGTGATACTCTAAATGAAACAA 57.228 30.769 0.00 0.00 31.44 2.83
189 190 8.239681 TCGTGTGATACTCTAAATGAAACAAG 57.760 34.615 0.00 0.00 0.00 3.16
190 191 7.870954 TCGTGTGATACTCTAAATGAAACAAGT 59.129 33.333 0.00 0.00 0.00 3.16
191 192 9.135843 CGTGTGATACTCTAAATGAAACAAGTA 57.864 33.333 0.00 0.00 0.00 2.24
197 198 9.877178 ATACTCTAAATGAAACAAGTAGAGGTG 57.123 33.333 17.81 0.00 41.31 4.00
198 199 7.736893 ACTCTAAATGAAACAAGTAGAGGTGT 58.263 34.615 17.81 0.00 41.31 4.16
199 200 7.657761 ACTCTAAATGAAACAAGTAGAGGTGTG 59.342 37.037 17.81 0.00 41.31 3.82
200 201 6.934645 TCTAAATGAAACAAGTAGAGGTGTGG 59.065 38.462 0.00 0.00 0.00 4.17
201 202 2.846193 TGAAACAAGTAGAGGTGTGGC 58.154 47.619 0.00 0.00 0.00 5.01
202 203 2.171659 TGAAACAAGTAGAGGTGTGGCA 59.828 45.455 0.00 0.00 0.00 4.92
203 204 2.550830 AACAAGTAGAGGTGTGGCAG 57.449 50.000 0.00 0.00 0.00 4.85
204 205 1.424638 ACAAGTAGAGGTGTGGCAGT 58.575 50.000 0.00 0.00 0.00 4.40
205 206 1.768870 ACAAGTAGAGGTGTGGCAGTT 59.231 47.619 0.00 0.00 0.00 3.16
206 207 2.172717 ACAAGTAGAGGTGTGGCAGTTT 59.827 45.455 0.00 0.00 0.00 2.66
207 208 3.214328 CAAGTAGAGGTGTGGCAGTTTT 58.786 45.455 0.00 0.00 0.00 2.43
208 209 2.851195 AGTAGAGGTGTGGCAGTTTTG 58.149 47.619 0.00 0.00 0.00 2.44
221 222 4.108699 GCAGTTTTGCTTATATGGCACA 57.891 40.909 0.00 0.00 46.95 4.57
222 223 3.859386 GCAGTTTTGCTTATATGGCACAC 59.141 43.478 0.00 5.66 45.13 3.82
223 224 5.483052 GCAGTTTTGCTTATATGGCACACG 61.483 45.833 0.00 0.00 45.13 4.49
224 225 7.826339 GCAGTTTTGCTTATATGGCACACGT 62.826 44.000 0.00 0.00 45.13 4.49
238 239 2.850321 CACACGTGTGCCAAATATCAC 58.150 47.619 33.52 0.00 39.39 3.06
240 241 3.895806 CGTGTGCCAAATATCACGG 57.104 52.632 8.36 0.00 46.12 4.94
241 242 1.083489 CGTGTGCCAAATATCACGGT 58.917 50.000 8.36 0.00 46.12 4.83
242 243 1.062002 CGTGTGCCAAATATCACGGTC 59.938 52.381 8.36 0.00 46.12 4.79
243 244 1.400494 GTGTGCCAAATATCACGGTCC 59.600 52.381 0.00 0.00 36.06 4.46
244 245 1.280710 TGTGCCAAATATCACGGTCCT 59.719 47.619 0.00 0.00 36.06 3.85
245 246 2.502130 TGTGCCAAATATCACGGTCCTA 59.498 45.455 0.00 0.00 36.06 2.94
246 247 3.055021 TGTGCCAAATATCACGGTCCTAA 60.055 43.478 0.00 0.00 36.06 2.69
247 248 4.134563 GTGCCAAATATCACGGTCCTAAT 58.865 43.478 0.00 0.00 0.00 1.73
248 249 5.163290 TGTGCCAAATATCACGGTCCTAATA 60.163 40.000 0.00 0.00 36.06 0.98
249 250 5.938125 GTGCCAAATATCACGGTCCTAATAT 59.062 40.000 0.00 0.00 0.00 1.28
250 251 6.430000 GTGCCAAATATCACGGTCCTAATATT 59.570 38.462 0.00 0.00 0.00 1.28
251 252 7.604927 GTGCCAAATATCACGGTCCTAATATTA 59.395 37.037 0.00 0.00 0.00 0.98
252 253 7.604927 TGCCAAATATCACGGTCCTAATATTAC 59.395 37.037 0.00 0.00 0.00 1.89
253 254 7.604927 GCCAAATATCACGGTCCTAATATTACA 59.395 37.037 0.00 0.00 0.00 2.41
254 255 8.932791 CCAAATATCACGGTCCTAATATTACAC 58.067 37.037 0.00 0.00 0.00 2.90
255 256 9.483916 CAAATATCACGGTCCTAATATTACACA 57.516 33.333 0.00 0.00 0.00 3.72
256 257 9.485206 AAATATCACGGTCCTAATATTACACAC 57.515 33.333 0.00 0.00 0.00 3.82
257 258 5.918426 TCACGGTCCTAATATTACACACA 57.082 39.130 0.00 0.00 0.00 3.72
258 259 5.653507 TCACGGTCCTAATATTACACACAC 58.346 41.667 0.00 0.00 0.00 3.82
259 260 5.185442 TCACGGTCCTAATATTACACACACA 59.815 40.000 0.00 0.00 0.00 3.72
260 261 5.290158 CACGGTCCTAATATTACACACACAC 59.710 44.000 0.00 0.00 0.00 3.82
261 262 5.047164 ACGGTCCTAATATTACACACACACA 60.047 40.000 0.00 0.00 0.00 3.72
262 263 5.290158 CGGTCCTAATATTACACACACACAC 59.710 44.000 0.00 0.00 0.00 3.82
263 264 6.167685 GGTCCTAATATTACACACACACACA 58.832 40.000 0.00 0.00 0.00 3.72
264 265 6.091713 GGTCCTAATATTACACACACACACAC 59.908 42.308 0.00 0.00 0.00 3.82
265 266 6.647481 GTCCTAATATTACACACACACACACA 59.353 38.462 0.00 0.00 0.00 3.72
266 267 6.647481 TCCTAATATTACACACACACACACAC 59.353 38.462 0.00 0.00 0.00 3.82
267 268 6.425417 CCTAATATTACACACACACACACACA 59.575 38.462 0.00 0.00 0.00 3.72
268 269 5.666969 ATATTACACACACACACACACAC 57.333 39.130 0.00 0.00 0.00 3.82
269 270 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
270 271 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
271 272 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
272 273 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
273 274 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
274 275 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
275 276 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
276 277 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
277 278 1.669437 ACACACACACACACGCACA 60.669 52.632 0.00 0.00 0.00 4.57
278 279 1.225991 CACACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
279 280 1.669437 ACACACACACACGCACACA 60.669 52.632 0.00 0.00 0.00 3.72
280 281 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
281 282 1.669437 ACACACACACGCACACACA 60.669 52.632 0.00 0.00 0.00 3.72
282 283 1.225991 CACACACACGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
283 284 1.669437 ACACACACGCACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
284 285 1.225991 CACACACGCACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
285 286 1.669437 ACACACGCACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
286 287 1.024046 ACACACGCACACACACACAT 61.024 50.000 0.00 0.00 0.00 3.21
287 288 0.589479 CACACGCACACACACACATG 60.589 55.000 0.00 0.00 0.00 3.21
288 289 0.742635 ACACGCACACACACACATGA 60.743 50.000 0.00 0.00 0.00 3.07
289 290 0.316114 CACGCACACACACACATGAC 60.316 55.000 0.00 0.00 0.00 3.06
290 291 1.279539 CGCACACACACACATGACC 59.720 57.895 0.00 0.00 0.00 4.02
291 292 1.279539 GCACACACACACATGACCG 59.720 57.895 0.00 0.00 0.00 4.79
292 293 1.157257 GCACACACACACATGACCGA 61.157 55.000 0.00 0.00 0.00 4.69
293 294 1.511850 CACACACACACATGACCGAT 58.488 50.000 0.00 0.00 0.00 4.18
294 295 1.195222 CACACACACACATGACCGATG 59.805 52.381 0.00 0.00 38.15 3.84
295 296 0.166597 CACACACACATGACCGATGC 59.833 55.000 0.00 0.00 35.15 3.91
296 297 0.955428 ACACACACATGACCGATGCC 60.955 55.000 0.00 0.00 35.15 4.40
297 298 0.954938 CACACACATGACCGATGCCA 60.955 55.000 0.00 0.00 35.15 4.92
318 319 1.613255 CCCTTTGGGTGCGTGAGTTAT 60.613 52.381 0.00 0.00 38.25 1.89
323 324 1.899814 TGGGTGCGTGAGTTATTCTCT 59.100 47.619 0.00 0.00 43.13 3.10
331 332 3.612860 CGTGAGTTATTCTCTCCAAACCG 59.387 47.826 0.00 0.00 43.13 4.44
338 339 4.826274 ATTCTCTCCAAACCGATCTTCA 57.174 40.909 0.00 0.00 0.00 3.02
339 340 4.617253 TTCTCTCCAAACCGATCTTCAA 57.383 40.909 0.00 0.00 0.00 2.69
345 346 2.307049 CAAACCGATCTTCAAACACGC 58.693 47.619 0.00 0.00 0.00 5.34
363 364 2.551887 ACGCTTTACATTGTGCACATGA 59.448 40.909 22.39 7.09 0.00 3.07
368 369 2.798976 ACATTGTGCACATGAACACC 57.201 45.000 22.39 0.00 32.21 4.16
376 377 2.139917 GCACATGAACACCGTCACTTA 58.860 47.619 0.00 0.00 0.00 2.24
377 378 2.096417 GCACATGAACACCGTCACTTAC 60.096 50.000 0.00 0.00 0.00 2.34
384 385 0.677288 CACCGTCACTTACCACCTCA 59.323 55.000 0.00 0.00 0.00 3.86
387 388 1.616865 CCGTCACTTACCACCTCAAGA 59.383 52.381 0.00 0.00 0.00 3.02
394 395 0.895530 TACCACCTCAAGAGCTTCGG 59.104 55.000 0.00 0.00 0.00 4.30
400 401 2.832129 ACCTCAAGAGCTTCGGTAATGA 59.168 45.455 0.00 0.00 0.00 2.57
407 408 3.197766 AGAGCTTCGGTAATGATTGGTGA 59.802 43.478 0.00 0.00 0.00 4.02
412 413 5.758296 GCTTCGGTAATGATTGGTGAGATAA 59.242 40.000 0.00 0.00 0.00 1.75
413 414 6.292919 GCTTCGGTAATGATTGGTGAGATAAC 60.293 42.308 0.00 0.00 0.00 1.89
426 427 4.935808 GGTGAGATAACAGAACCGACAAAT 59.064 41.667 0.00 0.00 0.00 2.32
437 438 6.717997 ACAGAACCGACAAATAAAACCCTAAT 59.282 34.615 0.00 0.00 0.00 1.73
440 441 9.299465 AGAACCGACAAATAAAACCCTAATAAA 57.701 29.630 0.00 0.00 0.00 1.40
454 455 6.663734 ACCCTAATAAATATGCTATGGCCTC 58.336 40.000 3.32 0.00 37.74 4.70
455 456 6.064717 CCCTAATAAATATGCTATGGCCTCC 58.935 44.000 3.32 0.00 37.74 4.30
459 460 2.349167 ATATGCTATGGCCTCCCTCA 57.651 50.000 3.32 0.00 37.74 3.86
465 466 1.971357 CTATGGCCTCCCTCATTACGT 59.029 52.381 3.32 0.00 0.00 3.57
468 469 1.353022 TGGCCTCCCTCATTACGTTTT 59.647 47.619 3.32 0.00 0.00 2.43
469 470 2.014857 GGCCTCCCTCATTACGTTTTC 58.985 52.381 0.00 0.00 0.00 2.29
470 471 2.355818 GGCCTCCCTCATTACGTTTTCT 60.356 50.000 0.00 0.00 0.00 2.52
475 477 5.472137 CCTCCCTCATTACGTTTTCTTTTGA 59.528 40.000 0.00 0.00 0.00 2.69
484 486 9.419737 CATTACGTTTTCTTTTGAACAATTTGG 57.580 29.630 0.00 0.00 38.30 3.28
494 496 9.184523 TCTTTTGAACAATTTGGAACTAGAGAA 57.815 29.630 0.00 0.00 0.00 2.87
503 505 9.231297 CAATTTGGAACTAGAGAAATGTTAGGA 57.769 33.333 0.00 0.00 0.00 2.94
510 512 7.496346 ACTAGAGAAATGTTAGGATGTTCCA 57.504 36.000 0.00 0.00 39.61 3.53
511 513 7.331791 ACTAGAGAAATGTTAGGATGTTCCAC 58.668 38.462 0.00 0.00 39.61 4.02
520 522 3.914426 AGGATGTTCCACCACATACTC 57.086 47.619 0.00 0.00 43.91 2.59
521 523 3.181329 AGGATGTTCCACCACATACTCA 58.819 45.455 0.00 0.00 43.91 3.41
535 537 2.428960 TACTCACATGTGTGCGCCGT 62.429 55.000 24.63 14.63 45.25 5.68
586 588 7.608153 AGAGGAATTTAAATTTTGGGTTACCG 58.392 34.615 14.45 0.00 40.75 4.02
591 593 6.475596 TTTAAATTTTGGGTTACCGTGGAA 57.524 33.333 0.00 0.00 40.75 3.53
592 594 4.594123 AAATTTTGGGTTACCGTGGAAG 57.406 40.909 0.00 0.00 40.75 3.46
603 605 1.676006 ACCGTGGAAGCAAAGAAACTG 59.324 47.619 0.00 0.00 0.00 3.16
609 611 3.255642 TGGAAGCAAAGAAACTGGCATAC 59.744 43.478 0.00 0.00 0.00 2.39
611 613 4.379918 GGAAGCAAAGAAACTGGCATACTC 60.380 45.833 0.00 0.00 0.00 2.59
612 614 3.084786 AGCAAAGAAACTGGCATACTCC 58.915 45.455 0.00 0.00 0.00 3.85
614 616 4.019321 AGCAAAGAAACTGGCATACTCCTA 60.019 41.667 0.00 0.00 0.00 2.94
616 618 5.358160 GCAAAGAAACTGGCATACTCCTATT 59.642 40.000 0.00 0.00 0.00 1.73
617 619 6.542370 GCAAAGAAACTGGCATACTCCTATTA 59.458 38.462 0.00 0.00 0.00 0.98
618 620 7.467403 GCAAAGAAACTGGCATACTCCTATTAC 60.467 40.741 0.00 0.00 0.00 1.89
620 622 7.056844 AGAAACTGGCATACTCCTATTACTC 57.943 40.000 0.00 0.00 0.00 2.59
621 623 6.611642 AGAAACTGGCATACTCCTATTACTCA 59.388 38.462 0.00 0.00 0.00 3.41
622 624 6.412362 AACTGGCATACTCCTATTACTCAG 57.588 41.667 0.00 0.00 0.00 3.35
623 625 4.282195 ACTGGCATACTCCTATTACTCAGC 59.718 45.833 0.00 0.00 0.00 4.26
624 626 4.223144 TGGCATACTCCTATTACTCAGCA 58.777 43.478 0.00 0.00 0.00 4.41
625 627 4.039245 TGGCATACTCCTATTACTCAGCAC 59.961 45.833 0.00 0.00 0.00 4.40
642 644 3.373748 CAGCACGAGTAATTGCCATGTTA 59.626 43.478 0.00 0.00 0.00 2.41
645 647 4.282068 CACGAGTAATTGCCATGTTATGC 58.718 43.478 0.00 0.00 0.00 3.14
658 660 3.334583 TGTTATGCTTGTGGGTCTCTC 57.665 47.619 0.00 0.00 0.00 3.20
716 718 7.970061 TGAGCGAAATTATTTTCTCCTCAATTG 59.030 33.333 18.11 0.00 40.70 2.32
733 735 6.072618 CCTCAATTGATAGATGTGCCATTCTC 60.073 42.308 8.96 0.00 0.00 2.87
788 790 3.181433 CCTTTTCAGTAAACCTCCCCACT 60.181 47.826 0.00 0.00 0.00 4.00
789 791 3.502123 TTTCAGTAAACCTCCCCACTG 57.498 47.619 0.00 0.00 39.79 3.66
791 793 0.322546 CAGTAAACCTCCCCACTGGC 60.323 60.000 0.00 0.00 35.77 4.85
792 794 1.376812 GTAAACCTCCCCACTGGCG 60.377 63.158 0.00 0.00 0.00 5.69
802 811 1.535204 CCCACTGGCGAGGCAAATTT 61.535 55.000 0.00 0.00 0.00 1.82
1376 1385 1.226802 CGCTCCAGGACATGTCTCG 60.227 63.158 24.50 15.41 0.00 4.04
1461 1470 1.740296 CGAAACGAAGGCCACCGAT 60.740 57.895 21.13 8.57 0.00 4.18
1536 1545 1.257055 ACTGCCTGCTCAGACTCCTC 61.257 60.000 7.91 0.00 37.51 3.71
1655 1664 1.910276 GCCTTTGCTTGGAAGGGCT 60.910 57.895 17.88 0.00 43.14 5.19
1714 1723 3.050339 CAGGGTGCGTGCCAAATT 58.950 55.556 0.23 0.00 0.00 1.82
1743 1752 7.653713 GTGTTCTATAATGTCTTGATCGATGGT 59.346 37.037 0.54 0.00 0.00 3.55
1760 1769 2.881827 TTATTGTCGACGCGGCGG 60.882 61.111 36.61 16.62 32.50 6.13
1807 1816 1.419387 GTGAGATGGAGATGAAGGGGG 59.581 57.143 0.00 0.00 0.00 5.40
1926 1935 0.698818 GGAGACTGTCCCCCAACATT 59.301 55.000 3.76 0.00 39.88 2.71
2032 2041 1.448540 GGCTGTGACCCTGATGTCG 60.449 63.158 0.00 0.00 38.11 4.35
2034 2043 0.320771 GCTGTGACCCTGATGTCGTT 60.321 55.000 0.00 0.00 38.11 3.85
2065 2074 2.507058 ACTTTGATATCTGGGCTCTGCA 59.493 45.455 3.98 0.00 0.00 4.41
2361 2370 9.322773 CTCCCTGATGCTAACATATATAATGTG 57.677 37.037 0.00 0.00 36.35 3.21
2373 2382 9.453572 AACATATATAATGTGCTGATTAGTGGG 57.546 33.333 0.00 0.00 31.80 4.61
2394 2403 4.038402 GGGCTATGCAAGAAACATATGCTT 59.962 41.667 1.58 0.00 40.66 3.91
2559 2568 1.609580 GGTGTCCGCCTTGATGTTGTA 60.610 52.381 0.00 0.00 0.00 2.41
2781 2790 7.072177 ACCAAATGTTGTTACATACTCATCG 57.928 36.000 0.00 0.00 44.14 3.84
2960 2969 4.777140 TCGAACACATGCTGATTAATCG 57.223 40.909 10.80 6.90 0.00 3.34
3081 3090 2.608752 GCATGACAAGGGTGCTCTTTTG 60.609 50.000 0.00 0.00 36.02 2.44
3121 3130 3.454082 GGTTAATGGCAAATGGGATCCAA 59.546 43.478 15.23 1.27 36.95 3.53
3314 3323 5.918608 GAGCATCCTACCTAATGACTTTCA 58.081 41.667 0.00 0.00 0.00 2.69
3328 3337 4.067896 TGACTTTCAGCCAGATCAACTTC 58.932 43.478 0.00 0.00 0.00 3.01
3347 3356 5.959512 ACTTCAGATAGCCTCTAGGTACAT 58.040 41.667 0.00 0.00 37.57 2.29
3407 3416 2.230025 GTGAAGTCTCTAGTGCTCTGCA 59.770 50.000 0.00 0.00 35.60 4.41
3427 3436 8.429493 TCTGCAGTTATATCTTGAAGAATGTG 57.571 34.615 14.67 0.00 0.00 3.21
3494 3503 0.961019 TCCTGGCACTTGCAAATGAC 59.039 50.000 12.91 9.96 44.36 3.06
3710 3736 2.355132 GCTTGCTGACATTCCATGAGAG 59.645 50.000 0.00 0.00 0.00 3.20
3761 3787 3.828451 ACTGGACATGCAAAACTGCTAAT 59.172 39.130 0.00 0.00 35.49 1.73
3766 3792 7.479980 TGGACATGCAAAACTGCTAATAATAC 58.520 34.615 0.00 0.00 35.49 1.89
3807 3834 5.243730 TGTTAATTTGCTAAAAGCTGGCTCT 59.756 36.000 0.03 0.00 42.97 4.09
3808 3835 4.446994 AATTTGCTAAAAGCTGGCTCTC 57.553 40.909 0.03 0.00 42.97 3.20
3820 3847 2.544069 GCTGGCTCTCCATACGTTCTAC 60.544 54.545 0.00 0.00 42.51 2.59
3834 3861 7.861372 CCATACGTTCTACTGTACTAATCTTGG 59.139 40.741 0.00 0.00 0.00 3.61
3990 4018 6.446781 AGGCATCTGATGTGACTTTAATTG 57.553 37.500 18.19 0.00 28.05 2.32
4020 4048 2.887152 GGTGGATTCTCAACAAGTGCTT 59.113 45.455 0.00 0.00 0.00 3.91
4092 4120 0.783850 AGGGTTTACAGGGCATGGTT 59.216 50.000 3.46 0.00 0.00 3.67
4095 4123 2.370519 GGGTTTACAGGGCATGGTTTTT 59.629 45.455 3.46 0.00 0.00 1.94
4096 4124 3.398406 GGTTTACAGGGCATGGTTTTTG 58.602 45.455 3.46 0.00 0.00 2.44
4195 4223 0.320374 ACTTAGCAGTAACAGCGGCA 59.680 50.000 1.45 0.00 37.01 5.69
4200 4228 2.213499 AGCAGTAACAGCGGCAATATC 58.787 47.619 1.45 0.00 37.01 1.63
4206 4234 5.696270 CAGTAACAGCGGCAATATCAGAATA 59.304 40.000 1.45 0.00 0.00 1.75
4207 4235 6.369890 CAGTAACAGCGGCAATATCAGAATAT 59.630 38.462 1.45 0.00 0.00 1.28
4232 4260 3.031736 GTGGTCTTCCATGAGCCTACTA 58.968 50.000 0.00 0.00 46.20 1.82
4285 4313 2.685388 TGAGCTAACGGAGACTGATGAG 59.315 50.000 0.00 0.00 0.00 2.90
4299 4327 7.244166 AGACTGATGAGAGCAATATTTTTCG 57.756 36.000 0.00 0.00 0.00 3.46
4310 4338 8.739972 AGAGCAATATTTTTCGTTAGACCAATT 58.260 29.630 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.137490 ACAAAGATATCATGGCATTCGTATG 57.863 36.000 5.32 0.00 34.76 2.39
3 4 6.372659 GGACAAAGATATCATGGCATTCGTAT 59.627 38.462 14.27 0.00 0.00 3.06
6 7 4.758674 AGGACAAAGATATCATGGCATTCG 59.241 41.667 14.27 0.00 0.00 3.34
7 8 5.766670 TCAGGACAAAGATATCATGGCATTC 59.233 40.000 14.27 0.00 0.00 2.67
8 9 5.698104 TCAGGACAAAGATATCATGGCATT 58.302 37.500 14.27 2.11 0.00 3.56
9 10 5.314718 TCAGGACAAAGATATCATGGCAT 57.685 39.130 14.27 6.28 0.00 4.40
10 11 4.776435 TCAGGACAAAGATATCATGGCA 57.224 40.909 14.27 0.00 0.00 4.92
12 13 6.824553 TCTCTTCAGGACAAAGATATCATGG 58.175 40.000 5.32 0.00 32.56 3.66
13 14 8.728337 TTTCTCTTCAGGACAAAGATATCATG 57.272 34.615 5.32 6.26 32.56 3.07
14 15 9.558396 GATTTCTCTTCAGGACAAAGATATCAT 57.442 33.333 5.32 0.00 32.56 2.45
15 16 8.542926 TGATTTCTCTTCAGGACAAAGATATCA 58.457 33.333 5.32 0.00 32.56 2.15
16 17 8.954950 TGATTTCTCTTCAGGACAAAGATATC 57.045 34.615 0.00 0.00 32.56 1.63
17 18 9.339850 CATGATTTCTCTTCAGGACAAAGATAT 57.660 33.333 0.00 0.00 32.56 1.63
18 19 8.324306 ACATGATTTCTCTTCAGGACAAAGATA 58.676 33.333 0.00 0.00 32.56 1.98
19 20 7.120873 CACATGATTTCTCTTCAGGACAAAGAT 59.879 37.037 0.00 0.00 32.56 2.40
20 21 6.429078 CACATGATTTCTCTTCAGGACAAAGA 59.571 38.462 0.00 0.00 0.00 2.52
21 22 6.349115 CCACATGATTTCTCTTCAGGACAAAG 60.349 42.308 0.00 0.00 0.00 2.77
22 23 5.474532 CCACATGATTTCTCTTCAGGACAAA 59.525 40.000 0.00 0.00 0.00 2.83
23 24 5.005740 CCACATGATTTCTCTTCAGGACAA 58.994 41.667 0.00 0.00 0.00 3.18
24 25 4.042062 ACCACATGATTTCTCTTCAGGACA 59.958 41.667 0.00 0.00 0.00 4.02
25 26 4.583871 ACCACATGATTTCTCTTCAGGAC 58.416 43.478 0.00 0.00 0.00 3.85
26 27 4.916041 ACCACATGATTTCTCTTCAGGA 57.084 40.909 0.00 0.00 0.00 3.86
27 28 5.814705 GTCTACCACATGATTTCTCTTCAGG 59.185 44.000 0.00 0.00 0.00 3.86
28 29 5.518128 CGTCTACCACATGATTTCTCTTCAG 59.482 44.000 0.00 0.00 0.00 3.02
29 30 5.047306 ACGTCTACCACATGATTTCTCTTCA 60.047 40.000 0.00 0.00 0.00 3.02
30 31 5.289675 CACGTCTACCACATGATTTCTCTTC 59.710 44.000 0.00 0.00 0.00 2.87
31 32 5.047306 TCACGTCTACCACATGATTTCTCTT 60.047 40.000 0.00 0.00 0.00 2.85
32 33 4.462834 TCACGTCTACCACATGATTTCTCT 59.537 41.667 0.00 0.00 0.00 3.10
33 34 4.744570 TCACGTCTACCACATGATTTCTC 58.255 43.478 0.00 0.00 0.00 2.87
34 35 4.801330 TCACGTCTACCACATGATTTCT 57.199 40.909 0.00 0.00 0.00 2.52
35 36 5.168569 TCTTCACGTCTACCACATGATTTC 58.831 41.667 0.00 0.00 0.00 2.17
36 37 5.147330 TCTTCACGTCTACCACATGATTT 57.853 39.130 0.00 0.00 0.00 2.17
37 38 4.801330 TCTTCACGTCTACCACATGATT 57.199 40.909 0.00 0.00 0.00 2.57
38 39 4.220821 ACTTCTTCACGTCTACCACATGAT 59.779 41.667 0.00 0.00 0.00 2.45
39 40 3.572682 ACTTCTTCACGTCTACCACATGA 59.427 43.478 0.00 0.00 0.00 3.07
40 41 3.675225 CACTTCTTCACGTCTACCACATG 59.325 47.826 0.00 0.00 0.00 3.21
41 42 3.306088 CCACTTCTTCACGTCTACCACAT 60.306 47.826 0.00 0.00 0.00 3.21
42 43 2.035449 CCACTTCTTCACGTCTACCACA 59.965 50.000 0.00 0.00 0.00 4.17
43 44 2.673833 CCACTTCTTCACGTCTACCAC 58.326 52.381 0.00 0.00 0.00 4.16
44 45 1.000506 GCCACTTCTTCACGTCTACCA 59.999 52.381 0.00 0.00 0.00 3.25
45 46 1.000506 TGCCACTTCTTCACGTCTACC 59.999 52.381 0.00 0.00 0.00 3.18
46 47 2.288273 ACTGCCACTTCTTCACGTCTAC 60.288 50.000 0.00 0.00 0.00 2.59
47 48 1.961394 ACTGCCACTTCTTCACGTCTA 59.039 47.619 0.00 0.00 0.00 2.59
48 49 0.753262 ACTGCCACTTCTTCACGTCT 59.247 50.000 0.00 0.00 0.00 4.18
49 50 1.583054 AACTGCCACTTCTTCACGTC 58.417 50.000 0.00 0.00 0.00 4.34
50 51 2.038387 AAACTGCCACTTCTTCACGT 57.962 45.000 0.00 0.00 0.00 4.49
51 52 2.614057 AGAAAACTGCCACTTCTTCACG 59.386 45.455 0.00 0.00 0.00 4.35
52 53 3.627577 TGAGAAAACTGCCACTTCTTCAC 59.372 43.478 0.00 0.00 29.59 3.18
53 54 3.879295 CTGAGAAAACTGCCACTTCTTCA 59.121 43.478 0.00 0.00 29.59 3.02
54 55 4.130118 TCTGAGAAAACTGCCACTTCTTC 58.870 43.478 0.00 0.00 29.59 2.87
55 56 4.133078 CTCTGAGAAAACTGCCACTTCTT 58.867 43.478 0.00 0.00 29.59 2.52
56 57 3.495806 CCTCTGAGAAAACTGCCACTTCT 60.496 47.826 6.17 0.00 32.11 2.85
57 58 2.810852 CCTCTGAGAAAACTGCCACTTC 59.189 50.000 6.17 0.00 0.00 3.01
58 59 2.173569 ACCTCTGAGAAAACTGCCACTT 59.826 45.455 6.17 0.00 0.00 3.16
59 60 1.771255 ACCTCTGAGAAAACTGCCACT 59.229 47.619 6.17 0.00 0.00 4.00
60 61 1.876156 CACCTCTGAGAAAACTGCCAC 59.124 52.381 6.17 0.00 0.00 5.01
61 62 1.202806 CCACCTCTGAGAAAACTGCCA 60.203 52.381 6.17 0.00 0.00 4.92
62 63 1.528129 CCACCTCTGAGAAAACTGCC 58.472 55.000 6.17 0.00 0.00 4.85
63 64 1.528129 CCCACCTCTGAGAAAACTGC 58.472 55.000 6.17 0.00 0.00 4.40
64 65 1.202806 TGCCCACCTCTGAGAAAACTG 60.203 52.381 6.17 0.00 0.00 3.16
65 66 1.140312 TGCCCACCTCTGAGAAAACT 58.860 50.000 6.17 0.00 0.00 2.66
66 67 1.239347 GTGCCCACCTCTGAGAAAAC 58.761 55.000 6.17 0.00 0.00 2.43
67 68 0.250295 CGTGCCCACCTCTGAGAAAA 60.250 55.000 6.17 0.00 0.00 2.29
68 69 1.371183 CGTGCCCACCTCTGAGAAA 59.629 57.895 6.17 0.00 0.00 2.52
69 70 3.059982 CGTGCCCACCTCTGAGAA 58.940 61.111 6.17 0.00 0.00 2.87
70 71 3.695606 GCGTGCCCACCTCTGAGA 61.696 66.667 6.17 0.00 0.00 3.27
75 76 4.148825 ATCTCGCGTGCCCACCTC 62.149 66.667 5.77 0.00 0.00 3.85
76 77 4.457496 CATCTCGCGTGCCCACCT 62.457 66.667 5.77 0.00 0.00 4.00
77 78 4.760047 ACATCTCGCGTGCCCACC 62.760 66.667 5.77 0.00 0.00 4.61
78 79 3.490759 CACATCTCGCGTGCCCAC 61.491 66.667 5.77 0.00 0.00 4.61
86 87 1.880340 CTTCTCCCGCACATCTCGC 60.880 63.158 0.00 0.00 0.00 5.03
87 88 1.880340 GCTTCTCCCGCACATCTCG 60.880 63.158 0.00 0.00 0.00 4.04
88 89 0.809241 CTGCTTCTCCCGCACATCTC 60.809 60.000 0.00 0.00 33.19 2.75
89 90 1.220206 CTGCTTCTCCCGCACATCT 59.780 57.895 0.00 0.00 33.19 2.90
90 91 1.817099 CCTGCTTCTCCCGCACATC 60.817 63.158 0.00 0.00 33.19 3.06
91 92 2.129555 AACCTGCTTCTCCCGCACAT 62.130 55.000 0.00 0.00 33.19 3.21
92 93 2.337879 AAACCTGCTTCTCCCGCACA 62.338 55.000 0.00 0.00 33.19 4.57
93 94 1.578206 GAAACCTGCTTCTCCCGCAC 61.578 60.000 0.00 0.00 33.19 5.34
94 95 1.302511 GAAACCTGCTTCTCCCGCA 60.303 57.895 0.00 0.00 35.80 5.69
95 96 1.003233 AGAAACCTGCTTCTCCCGC 60.003 57.895 0.00 0.00 29.31 6.13
96 97 3.145228 GAGAAACCTGCTTCTCCCG 57.855 57.895 2.73 0.00 43.73 5.14
100 101 1.964223 TCGTCTGAGAAACCTGCTTCT 59.036 47.619 0.00 0.00 38.39 2.85
101 102 2.288518 ACTCGTCTGAGAAACCTGCTTC 60.289 50.000 0.00 0.00 45.57 3.86
102 103 1.689273 ACTCGTCTGAGAAACCTGCTT 59.311 47.619 0.00 0.00 45.57 3.91
103 104 1.271102 GACTCGTCTGAGAAACCTGCT 59.729 52.381 0.00 0.00 45.57 4.24
104 105 1.271102 AGACTCGTCTGAGAAACCTGC 59.729 52.381 0.00 0.00 45.57 4.85
115 116 1.276421 CAAATGGACCCAGACTCGTCT 59.724 52.381 0.00 0.00 41.37 4.18
116 117 1.676014 CCAAATGGACCCAGACTCGTC 60.676 57.143 0.00 0.00 37.39 4.20
117 118 0.324943 CCAAATGGACCCAGACTCGT 59.675 55.000 0.00 0.00 37.39 4.18
118 119 0.613260 TCCAAATGGACCCAGACTCG 59.387 55.000 0.00 0.00 39.78 4.18
119 120 2.619074 CCTTCCAAATGGACCCAGACTC 60.619 54.545 0.54 0.00 45.39 3.36
120 121 1.355720 CCTTCCAAATGGACCCAGACT 59.644 52.381 0.54 0.00 45.39 3.24
121 122 1.354368 TCCTTCCAAATGGACCCAGAC 59.646 52.381 0.54 0.00 45.39 3.51
122 123 1.635487 CTCCTTCCAAATGGACCCAGA 59.365 52.381 0.54 0.00 45.39 3.86
123 124 1.341383 CCTCCTTCCAAATGGACCCAG 60.341 57.143 0.54 0.00 45.39 4.45
124 125 0.704076 CCTCCTTCCAAATGGACCCA 59.296 55.000 0.54 0.00 45.39 4.51
125 126 0.684479 GCCTCCTTCCAAATGGACCC 60.684 60.000 0.54 0.00 45.39 4.46
126 127 1.032114 CGCCTCCTTCCAAATGGACC 61.032 60.000 0.54 0.00 45.39 4.46
127 128 0.035439 TCGCCTCCTTCCAAATGGAC 60.035 55.000 0.54 0.00 45.39 4.02
128 129 0.253044 CTCGCCTCCTTCCAAATGGA 59.747 55.000 0.00 0.00 43.73 3.41
129 130 0.749454 CCTCGCCTCCTTCCAAATGG 60.749 60.000 0.00 0.00 0.00 3.16
130 131 0.035056 ACCTCGCCTCCTTCCAAATG 60.035 55.000 0.00 0.00 0.00 2.32
131 132 0.253327 GACCTCGCCTCCTTCCAAAT 59.747 55.000 0.00 0.00 0.00 2.32
132 133 1.125093 TGACCTCGCCTCCTTCCAAA 61.125 55.000 0.00 0.00 0.00 3.28
133 134 1.125093 TTGACCTCGCCTCCTTCCAA 61.125 55.000 0.00 0.00 0.00 3.53
134 135 1.125093 TTTGACCTCGCCTCCTTCCA 61.125 55.000 0.00 0.00 0.00 3.53
135 136 0.391793 CTTTGACCTCGCCTCCTTCC 60.392 60.000 0.00 0.00 0.00 3.46
136 137 0.391793 CCTTTGACCTCGCCTCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
137 138 0.836400 TCCTTTGACCTCGCCTCCTT 60.836 55.000 0.00 0.00 0.00 3.36
138 139 1.229209 TCCTTTGACCTCGCCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
139 140 1.079057 GTCCTTTGACCTCGCCTCC 60.079 63.158 0.00 0.00 35.34 4.30
140 141 1.446272 CGTCCTTTGACCTCGCCTC 60.446 63.158 0.00 0.00 38.32 4.70
141 142 1.469335 TTCGTCCTTTGACCTCGCCT 61.469 55.000 0.00 0.00 38.32 5.52
142 143 1.005394 TTCGTCCTTTGACCTCGCC 60.005 57.895 0.00 0.00 38.32 5.54
143 144 0.038526 TCTTCGTCCTTTGACCTCGC 60.039 55.000 0.00 0.00 38.32 5.03
144 145 2.433868 TTCTTCGTCCTTTGACCTCG 57.566 50.000 0.00 0.00 38.32 4.63
145 146 2.924290 CGATTCTTCGTCCTTTGACCTC 59.076 50.000 0.00 0.00 40.53 3.85
146 147 2.960819 CGATTCTTCGTCCTTTGACCT 58.039 47.619 0.00 0.00 40.53 3.85
150 151 9.029453 GAGTATCACACGATTCTTCGTCCTTTG 62.029 44.444 0.00 0.00 45.62 2.77
151 152 7.115531 GAGTATCACACGATTCTTCGTCCTTT 61.116 42.308 0.00 0.00 45.62 3.11
152 153 5.676584 GAGTATCACACGATTCTTCGTCCTT 60.677 44.000 0.00 0.00 45.62 3.36
153 154 4.201930 GAGTATCACACGATTCTTCGTCCT 60.202 45.833 0.00 0.00 45.62 3.85
154 155 4.036352 GAGTATCACACGATTCTTCGTCC 58.964 47.826 0.00 0.00 45.62 4.79
157 158 7.644157 TCATTTAGAGTATCACACGATTCTTCG 59.356 37.037 0.00 0.00 44.92 3.79
158 159 8.858003 TCATTTAGAGTATCACACGATTCTTC 57.142 34.615 0.00 0.00 37.82 2.87
159 160 9.653287 TTTCATTTAGAGTATCACACGATTCTT 57.347 29.630 0.00 0.00 37.82 2.52
160 161 9.088512 GTTTCATTTAGAGTATCACACGATTCT 57.911 33.333 0.00 0.00 37.82 2.40
161 162 8.869897 TGTTTCATTTAGAGTATCACACGATTC 58.130 33.333 0.00 0.00 37.82 2.52
162 163 8.771920 TGTTTCATTTAGAGTATCACACGATT 57.228 30.769 0.00 0.00 37.82 3.34
163 164 8.771920 TTGTTTCATTTAGAGTATCACACGAT 57.228 30.769 0.00 0.00 37.82 3.73
164 165 7.870954 ACTTGTTTCATTTAGAGTATCACACGA 59.129 33.333 0.00 0.00 37.82 4.35
165 166 8.018677 ACTTGTTTCATTTAGAGTATCACACG 57.981 34.615 0.00 0.00 37.82 4.49
171 172 9.877178 CACCTCTACTTGTTTCATTTAGAGTAT 57.123 33.333 0.00 0.00 35.83 2.12
172 173 8.867097 ACACCTCTACTTGTTTCATTTAGAGTA 58.133 33.333 0.00 0.00 35.83 2.59
173 174 7.657761 CACACCTCTACTTGTTTCATTTAGAGT 59.342 37.037 0.00 0.00 35.83 3.24
174 175 7.118390 CCACACCTCTACTTGTTTCATTTAGAG 59.882 40.741 0.00 0.00 36.88 2.43
175 176 6.934645 CCACACCTCTACTTGTTTCATTTAGA 59.065 38.462 0.00 0.00 0.00 2.10
176 177 6.348540 GCCACACCTCTACTTGTTTCATTTAG 60.349 42.308 0.00 0.00 0.00 1.85
177 178 5.472137 GCCACACCTCTACTTGTTTCATTTA 59.528 40.000 0.00 0.00 0.00 1.40
178 179 4.278419 GCCACACCTCTACTTGTTTCATTT 59.722 41.667 0.00 0.00 0.00 2.32
179 180 3.821033 GCCACACCTCTACTTGTTTCATT 59.179 43.478 0.00 0.00 0.00 2.57
180 181 3.181445 TGCCACACCTCTACTTGTTTCAT 60.181 43.478 0.00 0.00 0.00 2.57
181 182 2.171659 TGCCACACCTCTACTTGTTTCA 59.828 45.455 0.00 0.00 0.00 2.69
182 183 2.808543 CTGCCACACCTCTACTTGTTTC 59.191 50.000 0.00 0.00 0.00 2.78
183 184 2.172717 ACTGCCACACCTCTACTTGTTT 59.827 45.455 0.00 0.00 0.00 2.83
184 185 1.768870 ACTGCCACACCTCTACTTGTT 59.231 47.619 0.00 0.00 0.00 2.83
185 186 1.424638 ACTGCCACACCTCTACTTGT 58.575 50.000 0.00 0.00 0.00 3.16
186 187 2.550830 AACTGCCACACCTCTACTTG 57.449 50.000 0.00 0.00 0.00 3.16
187 188 3.214328 CAAAACTGCCACACCTCTACTT 58.786 45.455 0.00 0.00 0.00 2.24
188 189 2.851195 CAAAACTGCCACACCTCTACT 58.149 47.619 0.00 0.00 0.00 2.57
189 190 1.266989 GCAAAACTGCCACACCTCTAC 59.733 52.381 0.00 0.00 0.00 2.59
190 191 1.142870 AGCAAAACTGCCACACCTCTA 59.857 47.619 0.00 0.00 34.90 2.43
191 192 0.106519 AGCAAAACTGCCACACCTCT 60.107 50.000 0.00 0.00 34.90 3.69
192 193 0.746659 AAGCAAAACTGCCACACCTC 59.253 50.000 0.00 0.00 34.90 3.85
193 194 2.065899 TAAGCAAAACTGCCACACCT 57.934 45.000 0.00 0.00 34.90 4.00
194 195 4.423732 CATATAAGCAAAACTGCCACACC 58.576 43.478 0.00 0.00 34.90 4.16
195 196 4.423732 CCATATAAGCAAAACTGCCACAC 58.576 43.478 0.00 0.00 34.90 3.82
196 197 3.119173 GCCATATAAGCAAAACTGCCACA 60.119 43.478 0.00 0.00 34.90 4.17
197 198 3.119173 TGCCATATAAGCAAAACTGCCAC 60.119 43.478 0.00 0.00 37.28 5.01
198 199 3.095332 TGCCATATAAGCAAAACTGCCA 58.905 40.909 0.00 0.00 37.28 4.92
199 200 3.119173 TGTGCCATATAAGCAAAACTGCC 60.119 43.478 2.62 0.00 43.02 4.85
200 201 3.859386 GTGTGCCATATAAGCAAAACTGC 59.141 43.478 2.62 0.00 43.02 4.40
201 202 4.097714 CGTGTGCCATATAAGCAAAACTG 58.902 43.478 2.62 0.27 43.02 3.16
202 203 3.756434 ACGTGTGCCATATAAGCAAAACT 59.244 39.130 2.62 0.00 43.02 2.66
203 204 3.851403 CACGTGTGCCATATAAGCAAAAC 59.149 43.478 7.58 4.43 43.02 2.43
204 205 3.504134 ACACGTGTGCCATATAAGCAAAA 59.496 39.130 22.71 0.00 43.02 2.44
205 206 3.078097 ACACGTGTGCCATATAAGCAAA 58.922 40.909 22.71 0.00 43.02 3.68
206 207 2.418280 CACACGTGTGCCATATAAGCAA 59.582 45.455 33.52 0.00 43.02 3.91
207 208 2.006169 CACACGTGTGCCATATAAGCA 58.994 47.619 33.52 0.00 39.39 3.91
208 209 2.737467 CACACGTGTGCCATATAAGC 57.263 50.000 33.52 0.00 39.39 3.09
218 219 2.724533 CGTGATATTTGGCACACGTGTG 60.725 50.000 38.01 38.01 46.75 3.82
219 220 1.463056 CGTGATATTTGGCACACGTGT 59.537 47.619 17.22 17.22 46.75 4.49
220 221 2.158017 CGTGATATTTGGCACACGTG 57.842 50.000 15.48 15.48 46.75 4.49
223 224 1.400494 GGACCGTGATATTTGGCACAC 59.600 52.381 0.00 0.00 39.29 3.82
224 225 1.280710 AGGACCGTGATATTTGGCACA 59.719 47.619 0.00 0.00 34.78 4.57
225 226 2.038387 AGGACCGTGATATTTGGCAC 57.962 50.000 0.00 0.00 0.00 5.01
226 227 3.916359 TTAGGACCGTGATATTTGGCA 57.084 42.857 0.00 0.00 0.00 4.92
227 228 7.604927 TGTAATATTAGGACCGTGATATTTGGC 59.395 37.037 12.30 7.07 0.00 4.52
228 229 8.932791 GTGTAATATTAGGACCGTGATATTTGG 58.067 37.037 12.30 0.00 0.00 3.28
229 230 9.483916 TGTGTAATATTAGGACCGTGATATTTG 57.516 33.333 12.30 0.00 0.00 2.32
230 231 9.485206 GTGTGTAATATTAGGACCGTGATATTT 57.515 33.333 12.30 2.58 0.00 1.40
231 232 8.644216 TGTGTGTAATATTAGGACCGTGATATT 58.356 33.333 0.00 11.94 0.00 1.28
232 233 8.086522 GTGTGTGTAATATTAGGACCGTGATAT 58.913 37.037 0.00 0.00 0.00 1.63
233 234 7.068470 TGTGTGTGTAATATTAGGACCGTGATA 59.932 37.037 0.00 0.00 0.00 2.15
234 235 6.127281 TGTGTGTGTAATATTAGGACCGTGAT 60.127 38.462 0.00 0.00 0.00 3.06
235 236 5.185442 TGTGTGTGTAATATTAGGACCGTGA 59.815 40.000 0.00 0.00 0.00 4.35
236 237 5.290158 GTGTGTGTGTAATATTAGGACCGTG 59.710 44.000 0.00 0.00 0.00 4.94
237 238 5.047164 TGTGTGTGTGTAATATTAGGACCGT 60.047 40.000 0.00 0.00 0.00 4.83
238 239 5.290158 GTGTGTGTGTGTAATATTAGGACCG 59.710 44.000 0.00 0.00 0.00 4.79
239 240 6.091713 GTGTGTGTGTGTGTAATATTAGGACC 59.908 42.308 0.00 0.00 0.00 4.46
240 241 6.647481 TGTGTGTGTGTGTGTAATATTAGGAC 59.353 38.462 0.00 0.00 0.00 3.85
241 242 6.647481 GTGTGTGTGTGTGTGTAATATTAGGA 59.353 38.462 0.00 0.00 0.00 2.94
242 243 6.425417 TGTGTGTGTGTGTGTGTAATATTAGG 59.575 38.462 0.00 0.00 0.00 2.69
243 244 7.042389 TGTGTGTGTGTGTGTGTGTAATATTAG 60.042 37.037 0.00 0.00 0.00 1.73
244 245 6.761714 TGTGTGTGTGTGTGTGTGTAATATTA 59.238 34.615 0.00 0.00 0.00 0.98
245 246 5.586643 TGTGTGTGTGTGTGTGTGTAATATT 59.413 36.000 0.00 0.00 0.00 1.28
246 247 5.007234 GTGTGTGTGTGTGTGTGTGTAATAT 59.993 40.000 0.00 0.00 0.00 1.28
247 248 4.330347 GTGTGTGTGTGTGTGTGTGTAATA 59.670 41.667 0.00 0.00 0.00 0.98
248 249 3.126171 GTGTGTGTGTGTGTGTGTGTAAT 59.874 43.478 0.00 0.00 0.00 1.89
249 250 2.480802 GTGTGTGTGTGTGTGTGTGTAA 59.519 45.455 0.00 0.00 0.00 2.41
250 251 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
251 252 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
252 253 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
253 254 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
254 255 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
255 256 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
256 257 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
257 258 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
258 259 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
259 260 1.669437 TGTGCGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
260 261 1.225991 GTGTGCGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
261 262 1.669437 TGTGTGCGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
262 263 1.225991 GTGTGTGCGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
263 264 1.669437 TGTGTGTGCGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
264 265 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
265 266 1.669437 TGTGTGTGTGCGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
266 267 1.225991 GTGTGTGTGTGCGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
267 268 1.024046 ATGTGTGTGTGTGCGTGTGT 61.024 50.000 0.00 0.00 0.00 3.72
268 269 0.589479 CATGTGTGTGTGTGCGTGTG 60.589 55.000 0.00 0.00 0.00 3.82
269 270 0.742635 TCATGTGTGTGTGTGCGTGT 60.743 50.000 0.00 0.00 0.00 4.49
270 271 0.316114 GTCATGTGTGTGTGTGCGTG 60.316 55.000 0.00 0.00 0.00 5.34
271 272 1.436195 GGTCATGTGTGTGTGTGCGT 61.436 55.000 0.00 0.00 0.00 5.24
272 273 1.279539 GGTCATGTGTGTGTGTGCG 59.720 57.895 0.00 0.00 0.00 5.34
273 274 1.157257 TCGGTCATGTGTGTGTGTGC 61.157 55.000 0.00 0.00 0.00 4.57
274 275 1.195222 CATCGGTCATGTGTGTGTGTG 59.805 52.381 0.00 0.00 0.00 3.82
275 276 1.511850 CATCGGTCATGTGTGTGTGT 58.488 50.000 0.00 0.00 0.00 3.72
276 277 0.166597 GCATCGGTCATGTGTGTGTG 59.833 55.000 0.00 0.00 34.56 3.82
277 278 0.955428 GGCATCGGTCATGTGTGTGT 60.955 55.000 0.00 0.00 34.56 3.72
278 279 0.954938 TGGCATCGGTCATGTGTGTG 60.955 55.000 0.00 0.00 34.56 3.82
279 280 0.955428 GTGGCATCGGTCATGTGTGT 60.955 55.000 0.00 0.00 34.56 3.72
280 281 1.647545 GGTGGCATCGGTCATGTGTG 61.648 60.000 0.00 0.00 34.56 3.82
281 282 1.377202 GGTGGCATCGGTCATGTGT 60.377 57.895 0.00 0.00 34.56 3.72
282 283 2.114670 GGGTGGCATCGGTCATGTG 61.115 63.158 0.00 0.00 34.56 3.21
283 284 1.852157 AAGGGTGGCATCGGTCATGT 61.852 55.000 0.00 0.00 34.56 3.21
284 285 0.680921 AAAGGGTGGCATCGGTCATG 60.681 55.000 0.00 0.00 35.29 3.07
285 286 0.680921 CAAAGGGTGGCATCGGTCAT 60.681 55.000 0.00 0.00 0.00 3.06
286 287 1.303236 CAAAGGGTGGCATCGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
287 288 2.046285 CCAAAGGGTGGCATCGGTC 61.046 63.158 0.00 0.00 41.72 4.79
288 289 2.035626 CCAAAGGGTGGCATCGGT 59.964 61.111 0.00 0.00 41.72 4.69
312 313 5.908341 AGATCGGTTTGGAGAGAATAACTC 58.092 41.667 0.00 0.00 45.22 3.01
318 319 4.617253 TTGAAGATCGGTTTGGAGAGAA 57.383 40.909 0.00 0.00 0.00 2.87
323 324 2.546368 CGTGTTTGAAGATCGGTTTGGA 59.454 45.455 0.00 0.00 0.00 3.53
331 332 6.086765 CACAATGTAAAGCGTGTTTGAAGATC 59.913 38.462 0.00 0.00 0.00 2.75
338 339 3.112580 GTGCACAATGTAAAGCGTGTTT 58.887 40.909 13.17 0.00 0.00 2.83
339 340 2.098280 TGTGCACAATGTAAAGCGTGTT 59.902 40.909 19.28 0.00 0.00 3.32
345 346 4.681025 GGTGTTCATGTGCACAATGTAAAG 59.319 41.667 25.72 7.99 37.35 1.85
363 364 1.069668 GAGGTGGTAAGTGACGGTGTT 59.930 52.381 0.00 0.00 0.00 3.32
368 369 2.927014 GCTCTTGAGGTGGTAAGTGACG 60.927 54.545 0.00 0.00 0.00 4.35
376 377 1.122019 ACCGAAGCTCTTGAGGTGGT 61.122 55.000 2.96 4.81 31.69 4.16
377 378 0.895530 TACCGAAGCTCTTGAGGTGG 59.104 55.000 13.35 4.21 33.88 4.61
384 385 3.941483 CACCAATCATTACCGAAGCTCTT 59.059 43.478 0.00 0.00 0.00 2.85
387 388 3.197766 TCTCACCAATCATTACCGAAGCT 59.802 43.478 0.00 0.00 0.00 3.74
394 395 7.254455 CGGTTCTGTTATCTCACCAATCATTAC 60.254 40.741 0.00 0.00 0.00 1.89
400 401 4.020573 TGTCGGTTCTGTTATCTCACCAAT 60.021 41.667 0.00 0.00 0.00 3.16
407 408 7.094506 GGGTTTTATTTGTCGGTTCTGTTATCT 60.095 37.037 0.00 0.00 0.00 1.98
412 413 4.466827 AGGGTTTTATTTGTCGGTTCTGT 58.533 39.130 0.00 0.00 0.00 3.41
413 414 6.563222 TTAGGGTTTTATTTGTCGGTTCTG 57.437 37.500 0.00 0.00 0.00 3.02
426 427 9.250246 GGCCATAGCATATTTATTAGGGTTTTA 57.750 33.333 0.00 0.00 42.56 1.52
437 438 4.175172 TGAGGGAGGCCATAGCATATTTA 58.825 43.478 5.01 0.00 42.56 1.40
440 441 2.349167 TGAGGGAGGCCATAGCATAT 57.651 50.000 5.01 0.00 42.56 1.78
442 443 1.453633 AATGAGGGAGGCCATAGCAT 58.546 50.000 5.01 0.00 42.56 3.79
454 455 6.500041 TGTTCAAAAGAAAACGTAATGAGGG 58.500 36.000 0.00 0.00 0.00 4.30
455 456 7.979115 TTGTTCAAAAGAAAACGTAATGAGG 57.021 32.000 0.00 0.00 0.00 3.86
459 460 9.372369 TCCAAATTGTTCAAAAGAAAACGTAAT 57.628 25.926 0.00 0.00 0.00 1.89
468 469 8.746052 TCTCTAGTTCCAAATTGTTCAAAAGA 57.254 30.769 0.00 0.00 0.00 2.52
469 470 9.801873 TTTCTCTAGTTCCAAATTGTTCAAAAG 57.198 29.630 0.00 0.00 0.00 2.27
484 486 8.041323 TGGAACATCCTAACATTTCTCTAGTTC 58.959 37.037 0.00 0.00 37.46 3.01
494 496 4.380843 TGTGGTGGAACATCCTAACATT 57.619 40.909 0.00 0.00 39.87 2.71
500 502 3.055094 GTGAGTATGTGGTGGAACATCCT 60.055 47.826 0.00 0.00 39.87 3.24
503 505 4.263462 ACATGTGAGTATGTGGTGGAACAT 60.263 41.667 0.00 0.00 39.45 2.71
567 569 6.667558 TCCACGGTAACCCAAAATTTAAAT 57.332 33.333 0.00 0.00 0.00 1.40
568 570 6.475596 TTCCACGGTAACCCAAAATTTAAA 57.524 33.333 0.00 0.00 0.00 1.52
569 571 5.509332 GCTTCCACGGTAACCCAAAATTTAA 60.509 40.000 0.00 0.00 0.00 1.52
570 572 4.022155 GCTTCCACGGTAACCCAAAATTTA 60.022 41.667 0.00 0.00 0.00 1.40
573 575 1.890489 GCTTCCACGGTAACCCAAAAT 59.110 47.619 0.00 0.00 0.00 1.82
586 588 1.408702 TGCCAGTTTCTTTGCTTCCAC 59.591 47.619 0.00 0.00 0.00 4.02
591 593 3.084786 GGAGTATGCCAGTTTCTTTGCT 58.915 45.455 0.00 0.00 0.00 3.91
592 594 3.084786 AGGAGTATGCCAGTTTCTTTGC 58.915 45.455 0.00 0.00 0.00 3.68
603 605 4.561105 GTGCTGAGTAATAGGAGTATGCC 58.439 47.826 0.00 0.00 0.00 4.40
620 622 1.739466 ACATGGCAATTACTCGTGCTG 59.261 47.619 0.00 0.00 40.70 4.41
621 623 2.113860 ACATGGCAATTACTCGTGCT 57.886 45.000 0.00 0.00 40.70 4.40
622 624 2.919666 AACATGGCAATTACTCGTGC 57.080 45.000 0.00 0.00 40.14 5.34
623 625 4.035558 AGCATAACATGGCAATTACTCGTG 59.964 41.667 0.00 0.00 0.00 4.35
624 626 4.199310 AGCATAACATGGCAATTACTCGT 58.801 39.130 0.00 0.00 0.00 4.18
625 627 4.818534 AGCATAACATGGCAATTACTCG 57.181 40.909 0.00 0.00 0.00 4.18
642 644 1.557099 TACGAGAGACCCACAAGCAT 58.443 50.000 0.00 0.00 0.00 3.79
645 647 3.991367 AGTTTTACGAGAGACCCACAAG 58.009 45.455 0.00 0.00 0.00 3.16
788 790 2.656055 GCCAAATTTGCCTCGCCA 59.344 55.556 12.92 0.00 0.00 5.69
789 791 2.506881 CGCCAAATTTGCCTCGCC 60.507 61.111 12.92 0.00 0.00 5.54
791 793 1.154035 GTCCGCCAAATTTGCCTCG 60.154 57.895 12.92 13.94 0.00 4.63
792 794 1.154035 CGTCCGCCAAATTTGCCTC 60.154 57.895 12.92 3.34 0.00 4.70
1355 1364 2.046892 ACATGTCCTGGAGCGTGC 60.047 61.111 14.44 0.00 0.00 5.34
1461 1470 2.579518 CTGACGCGCTCGCACATA 60.580 61.111 5.73 0.00 42.06 2.29
1570 1579 5.163764 CCTTAGCAAGCATTTCGTCATACAA 60.164 40.000 0.00 0.00 0.00 2.41
1655 1664 2.154798 CTTCACGCCCTTCTCGACCA 62.155 60.000 0.00 0.00 0.00 4.02
1714 1723 7.996385 TCGATCAAGACATTATAGAACACAGA 58.004 34.615 0.00 0.00 0.00 3.41
1743 1752 2.881827 CCGCCGCGTCGACAATAA 60.882 61.111 12.69 0.00 0.00 1.40
1760 1769 0.394352 CAACAGTCCCCTACCCATGC 60.394 60.000 0.00 0.00 0.00 4.06
1926 1935 7.169813 GCATCGATGACACTGTTATAAATCTCA 59.830 37.037 29.20 0.00 0.00 3.27
2034 2043 8.989131 AGCCCAGATATCAAAGTACTAAAAGTA 58.011 33.333 5.32 0.00 0.00 2.24
2065 2074 1.073199 CTTGAACACGCCCTTCCCT 59.927 57.895 0.00 0.00 0.00 4.20
2206 2215 3.701664 ACCCTCTTTCCATCATTTCCAC 58.298 45.455 0.00 0.00 0.00 4.02
2361 2370 2.260844 TGCATAGCCCACTAATCAGC 57.739 50.000 0.00 0.00 30.45 4.26
2373 2382 5.009410 AGGAAGCATATGTTTCTTGCATAGC 59.991 40.000 25.52 11.02 38.84 2.97
2394 2403 2.260822 AGAAGGTTTCTAGCTGCAGGA 58.739 47.619 17.12 0.78 38.49 3.86
2502 2511 3.973206 TCGAATACTTTCCTTGCCTCA 57.027 42.857 0.00 0.00 0.00 3.86
2781 2790 8.507249 CCTAGCTTGCAGTATCCATTTATTAAC 58.493 37.037 0.00 0.00 0.00 2.01
2960 2969 5.589192 ACGTAATATCACTAGGAGCACAAC 58.411 41.667 0.00 0.00 0.00 3.32
3053 3062 2.357009 GCACCCTTGTCATGCATCTTAG 59.643 50.000 0.00 0.00 39.23 2.18
3081 3090 3.382083 ACCAAACCCCTGAATATGTCC 57.618 47.619 0.00 0.00 0.00 4.02
3151 3160 2.227388 GCATATTGTGTCTGCATAGGCC 59.773 50.000 0.00 0.00 40.13 5.19
3216 3225 1.199558 GTGACAGAGTCCGGTGAGTAC 59.800 57.143 0.00 0.00 0.00 2.73
3314 3323 3.181456 GGCTATCTGAAGTTGATCTGGCT 60.181 47.826 0.00 0.00 0.00 4.75
3407 3416 8.943085 AGGATCCACATTCTTCAAGATATAACT 58.057 33.333 15.82 0.00 0.00 2.24
3427 3436 5.659440 TGCTCCATTTGTTTTAAGGATCC 57.341 39.130 2.48 2.48 0.00 3.36
3458 3467 4.848357 CCAGGAACAATATCAGGAACACT 58.152 43.478 0.00 0.00 0.00 3.55
3459 3468 3.378427 GCCAGGAACAATATCAGGAACAC 59.622 47.826 0.00 0.00 0.00 3.32
3582 3606 7.232534 AGACCATTTCTACTGGAGATCTATCAC 59.767 40.741 0.00 0.00 37.22 3.06
3665 3691 5.709164 CCAGAAAGAATTTGTCACAGGAGAT 59.291 40.000 0.00 0.00 39.27 2.75
3761 3787 5.013704 ACAATGTGTTCTGAGGGTGGTATTA 59.986 40.000 0.00 0.00 0.00 0.98
3766 3792 2.276732 ACAATGTGTTCTGAGGGTGG 57.723 50.000 0.00 0.00 0.00 4.61
3807 3834 8.618677 CAAGATTAGTACAGTAGAACGTATGGA 58.381 37.037 0.00 0.00 0.00 3.41
3808 3835 7.861372 CCAAGATTAGTACAGTAGAACGTATGG 59.139 40.741 0.00 0.00 0.00 2.74
3820 3847 8.400947 CAAAATGTGATCCCAAGATTAGTACAG 58.599 37.037 0.00 0.00 30.90 2.74
3834 3861 4.996122 TGACCAAAATGCAAAATGTGATCC 59.004 37.500 0.00 0.00 0.00 3.36
3990 4018 4.254492 GTTGAGAATCCACCTTACCAGAC 58.746 47.826 0.00 0.00 0.00 3.51
4020 4048 3.825585 TCATTCACCTGCTTAATTGCACA 59.174 39.130 0.00 0.00 38.12 4.57
4195 4223 8.717717 TGGAAGACCACTCAATATTCTGATATT 58.282 33.333 0.00 0.00 41.77 1.28
4232 4260 1.410153 CCAAGTTCTGCCTTGCAACTT 59.590 47.619 0.00 0.00 39.30 2.66
4285 4313 8.911247 AATTGGTCTAACGAAAAATATTGCTC 57.089 30.769 0.00 0.00 0.00 4.26
4299 4327 5.938125 TGTTCCTTGCTAGAATTGGTCTAAC 59.062 40.000 0.00 0.00 38.41 2.34
4310 4338 4.431416 TGGTTTTCTGTTCCTTGCTAGA 57.569 40.909 0.00 0.00 0.00 2.43
4367 4396 5.164954 TCGCAACTTGCAAGTTTTAGTTTT 58.835 33.333 36.19 15.38 46.52 2.43
4373 4402 2.939460 ACTCGCAACTTGCAAGTTTT 57.061 40.000 36.19 19.02 37.33 2.43
4387 4416 1.009829 CTGATACCCTTGCAACTCGC 58.990 55.000 0.00 0.00 42.89 5.03
4388 4417 1.066143 ACCTGATACCCTTGCAACTCG 60.066 52.381 0.00 0.00 0.00 4.18
4389 4418 2.290323 ACACCTGATACCCTTGCAACTC 60.290 50.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.