AutoCloner

Multiple sequence alignment - TraesCS5A01G136700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G136700	chr5A	100.000	2429	0	0	1	2429	308388495	308386067	0.000000e+00	4486
1	TraesCS5A01G136700	chr5A	95.837	2114	85	3	1	2112	308412913	308410801	0.000000e+00	3413
2	TraesCS5A01G136700	chr5A	95.556	900	39	1	1426	2324	308395939	308395040	0.000000e+00	1439
3	TraesCS5A01G136700	chr5A	86.081	546	58	17	1787	2323	399427772	399428308	2.710000e-159	571
4	TraesCS5A01G136700	chr1A	89.107	1579	114	34	5	1543	129722774	129724334	0.000000e+00	1910
5	TraesCS5A01G136700	chr1A	84.628	605	68	23	1734	2326	469077681	469078272	1.620000e-161	579
6	TraesCS5A01G136700	chr5B	87.019	1402	135	37	169	1540	341778021	341779405	0.000000e+00	1537
7	TraesCS5A01G136700	chr5B	88.556	935	73	14	115	1041	341690968	341691876	0.000000e+00	1103
8	TraesCS5A01G136700	chr5B	82.879	257	37	7	1753	2006	553004561	553004813	8.740000e-55	224
9	TraesCS5A01G136700	chr5B	94.595	111	5	1	2319	2429	82868985	82868876	1.150000e-38	171
10	TraesCS5A01G136700	chr4B	87.325	1073	106	24	420	1478	426498117	426497061	0.000000e+00	1201
11	TraesCS5A01G136700	chr4B	87.220	1072	108	23	420	1478	426491180	426490125	0.000000e+00	1194
12	TraesCS5A01G136700	chr4B	85.586	222	30	2	1782	2002	279046644	279046864	5.220000e-57	231
13	TraesCS5A01G136700	chr4B	94.326	141	8	0	5	145	172591668	172591808	1.460000e-52	217
14	TraesCS5A01G136700	chr3B	87.300	1063	108	21	420	1470	371422488	371421441	0.000000e+00	1190
15	TraesCS5A01G136700	chr3B	86.555	1071	114	25	420	1478	371414835	371413783	0.000000e+00	1153
16	TraesCS5A01G136700	chr3B	84.615	390	42	7	155	532	453169668	453169285	2.950000e-99	372
17	TraesCS5A01G136700	chr3B	87.795	254	26	3	279	532	453173254	453173006	2.360000e-75	292
18	TraesCS5A01G136700	chr3B	84.488	303	31	10	78	367	644435452	644435153	3.950000e-73	285
19	TraesCS5A01G136700	chr3B	95.495	111	4	1	2320	2429	720325986	720326096	2.480000e-40	176
20	TraesCS5A01G136700	chr2B	86.952	1073	112	24	415	1475	538083285	538084341	0.000000e+00	1181
21	TraesCS5A01G136700	chr2B	86.952	1073	112	24	415	1475	538094838	538095894	0.000000e+00	1181
22	TraesCS5A01G136700	chr2B	85.039	381	32	12	5	367	251588473	251588100	4.940000e-97	364
23	TraesCS5A01G136700	chr2B	86.377	345	27	10	5	330	457250105	457249762	2.300000e-95	359
24	TraesCS5A01G136700	chr2B	84.169	379	42	11	5	367	333419166	333419542	3.840000e-93	351
25	TraesCS5A01G136700	chr2B	85.756	344	30	9	5	330	457240752	457240410	1.790000e-91	346
26	TraesCS5A01G136700	chr2B	84.585	253	22	12	121	359	516624830	516624581	4.040000e-58	235
27	TraesCS5A01G136700	chr2B	83.962	212	21	9	167	367	457240407	457240198	8.860000e-45	191
28	TraesCS5A01G136700	chr3A	91.489	564	45	3	1763	2324	382115792	382115230	0.000000e+00	773
29	TraesCS5A01G136700	chr3A	85.538	567	65	16	1765	2323	355724111	355723554	5.820000e-161	577
30	TraesCS5A01G136700	chr3A	89.147	387	38	4	1763	2147	382102249	382101865	1.690000e-131	479
31	TraesCS5A01G136700	chr3D	85.857	601	65	18	1734	2324	260267127	260267717	2.650000e-174	621
32	TraesCS5A01G136700	chr3D	85.546	595	64	21	1734	2317	260274743	260275326	9.610000e-169	603
33	TraesCS5A01G136700	chr4A	85.691	601	65	19	1734	2324	442880536	442879947	4.440000e-172	614
34	TraesCS5A01G136700	chr6A	84.656	567	72	14	1765	2324	480419681	480419123	3.530000e-153	551
35	TraesCS5A01G136700	chr6B	84.655	391	43	8	155	532	288229441	288229827	8.200000e-100	374
36	TraesCS5A01G136700	chr6B	90.732	205	13	4	5	203	400666617	400666821	3.980000e-68	268
37	TraesCS5A01G136700	chr6B	95.495	111	4	1	2320	2429	249220558	249220668	2.480000e-40	176
38	TraesCS5A01G136700	chr2A	84.293	382	34	14	5	367	395009997	395010371	1.380000e-92	350
39	TraesCS5A01G136700	chr2A	84.293	382	33	15	5	367	406168593	406168220	4.970000e-92	348
40	TraesCS5A01G136700	chr2A	84.082	245	33	6	1764	2005	307968306	307968065	5.220000e-57	231
41	TraesCS5A01G136700	chr2A	93.860	114	6	1	2317	2429	436505232	436505345	1.150000e-38	171
42	TraesCS5A01G136700	chr1D	86.239	218	28	2	1786	2002	143262423	143262639	4.040000e-58	235
43	TraesCS5A01G136700	chr1D	78.244	262	30	16	1173	1430	122181542	122181304	2.520000e-30	143
44	TraesCS5A01G136700	chr1D	76.976	291	36	17	1173	1456	122175279	122175013	1.170000e-28	137
45	TraesCS5A01G136700	chr7B	84.188	234	33	3	1773	2005	430125000	430124770	8.740000e-55	224
46	TraesCS5A01G136700	chr7B	95.495	111	4	1	2320	2429	140192620	140192510	2.480000e-40	176
47	TraesCS5A01G136700	chr6D	95.495	111	4	1	2320	2429	119085369	119085479	2.480000e-40	176
48	TraesCS5A01G136700	chr6D	95.495	111	4	1	2320	2429	177921111	177921001	2.480000e-40	176
49	TraesCS5A01G136700	chr6D	76.834	259	36	15	1173	1430	128030010	128029775	9.120000e-25	124
50	TraesCS5A01G136700	chr5D	95.495	111	4	1	2320	2429	234938641	234938751	2.480000e-40	176
51	TraesCS5A01G136700	chr2D	95.495	111	4	1	2320	2429	469639160	469639050	2.480000e-40	176
52	TraesCS5A01G136700	chr4D	76.552	290	36	21	1173	1454	285174618	285174883	1.960000e-26	130

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G136700	chr5A	308386067	308388495	2428	True	4486.0	4486	100.000	1	2429	1	chr5A.!!$R1	2428
1	TraesCS5A01G136700	chr5A	308410801	308412913	2112	True	3413.0	3413	95.837	1	2112	1	chr5A.!!$R3	2111
2	TraesCS5A01G136700	chr5A	308395040	308395939	899	True	1439.0	1439	95.556	1426	2324	1	chr5A.!!$R2	898
3	TraesCS5A01G136700	chr5A	399427772	399428308	536	False	571.0	571	86.081	1787	2323	1	chr5A.!!$F1	536
4	TraesCS5A01G136700	chr1A	129722774	129724334	1560	False	1910.0	1910	89.107	5	1543	1	chr1A.!!$F1	1538
5	TraesCS5A01G136700	chr1A	469077681	469078272	591	False	579.0	579	84.628	1734	2326	1	chr1A.!!$F2	592
6	TraesCS5A01G136700	chr5B	341778021	341779405	1384	False	1537.0	1537	87.019	169	1540	1	chr5B.!!$F2	1371
7	TraesCS5A01G136700	chr5B	341690968	341691876	908	False	1103.0	1103	88.556	115	1041	1	chr5B.!!$F1	926
8	TraesCS5A01G136700	chr4B	426497061	426498117	1056	True	1201.0	1201	87.325	420	1478	1	chr4B.!!$R2	1058
9	TraesCS5A01G136700	chr4B	426490125	426491180	1055	True	1194.0	1194	87.220	420	1478	1	chr4B.!!$R1	1058
10	TraesCS5A01G136700	chr3B	371421441	371422488	1047	True	1190.0	1190	87.300	420	1470	1	chr3B.!!$R2	1050
11	TraesCS5A01G136700	chr3B	371413783	371414835	1052	True	1153.0	1153	86.555	420	1478	1	chr3B.!!$R1	1058
12	TraesCS5A01G136700	chr3B	453169285	453173254	3969	True	332.0	372	86.205	155	532	2	chr3B.!!$R4	377
13	TraesCS5A01G136700	chr2B	538083285	538084341	1056	False	1181.0	1181	86.952	415	1475	1	chr2B.!!$F2	1060
14	TraesCS5A01G136700	chr2B	538094838	538095894	1056	False	1181.0	1181	86.952	415	1475	1	chr2B.!!$F3	1060
15	TraesCS5A01G136700	chr2B	457240198	457240752	554	True	268.5	346	84.859	5	367	2	chr2B.!!$R4	362
16	TraesCS5A01G136700	chr3A	382115230	382115792	562	True	773.0	773	91.489	1763	2324	1	chr3A.!!$R3	561
17	TraesCS5A01G136700	chr3A	355723554	355724111	557	True	577.0	577	85.538	1765	2323	1	chr3A.!!$R1	558
18	TraesCS5A01G136700	chr3D	260267127	260267717	590	False	621.0	621	85.857	1734	2324	1	chr3D.!!$F1	590
19	TraesCS5A01G136700	chr3D	260274743	260275326	583	False	603.0	603	85.546	1734	2317	1	chr3D.!!$F2	583
20	TraesCS5A01G136700	chr4A	442879947	442880536	589	True	614.0	614	85.691	1734	2324	1	chr4A.!!$R1	590
21	TraesCS5A01G136700	chr6A	480419123	480419681	558	True	551.0	551	84.656	1765	2324	1	chr6A.!!$R1	559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
352	374	0.611896	CGGCCTTGGGGATTTGAACT	60.612	55.0	0.0	0.0	33.58	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1551	2040	1.071471	CCCACCTGCAACGTCTCTT	59.929	57.895	0.0	0.0	0.0	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	9.100554	TGAACAATTCAAAATGATGGCATAATC	57.899	29.630	0.00	0.00	36.59	1.75
29	30	8.657074	ACAATTCAAAATGATGGCATAATCTG	57.343	30.769	0.00	0.13	33.44	2.90
75	78	2.094545	GCTAAATTGCAGTGAACAGGGG	60.095	50.000	0.00	0.00	0.00	4.79
76	79	1.341080	AAATTGCAGTGAACAGGGGG	58.659	50.000	0.00	0.00	0.00	5.40
92	95	0.755327	GGGGAAAACATATGCGGGCT	60.755	55.000	1.58	0.00	0.00	5.19
158	161	2.464865	CGGATTTTTGCACGTTTTGGA	58.535	42.857	0.00	0.00	0.00	3.53
218	229	3.418623	ATCCCAGGGCCTCCTCCTC	62.419	68.421	0.95	0.00	42.67	3.71
330	352	7.213216	AGCAAAAATTGGTGAAAACAAAAGT	57.787	28.000	0.00	0.00	40.37	2.66
338	360	1.205893	TGAAAACAAAAGTTGCGGCCT	59.794	42.857	0.00	0.00	0.00	5.19
352	374	0.611896	CGGCCTTGGGGATTTGAACT	60.612	55.000	0.00	0.00	33.58	3.01
359	381	2.348472	TGGGGATTTGAACTCTGGTCT	58.652	47.619	0.00	0.00	0.00	3.85
544	574	3.509184	CGAGATCCCTCAGATTAGCATGA	59.491	47.826	0.00	0.00	39.39	3.07
572	602	1.007118	TGATCACCAGGCTAGTGAGGA	59.993	52.381	19.98	7.23	46.76	3.71
580	610	3.390639	CCAGGCTAGTGAGGAGATTGATT	59.609	47.826	0.00	0.00	0.00	2.57
652	684	1.301479	GGACGGACGGCAAAACTCT	60.301	57.895	0.00	0.00	0.00	3.24
959	1322	1.958715	TGTGCTGTGCGCGTATGTT	60.959	52.632	8.43	0.00	42.51	2.71
960	1323	1.206578	GTGCTGTGCGCGTATGTTT	59.793	52.632	8.43	0.00	43.27	2.83
1024	1387	1.548719	CGGATATGGGATTGGCGACTA	59.451	52.381	0.00	0.00	0.00	2.59
1431	1898	2.242452	GGAAGATGGAAAACCCTAGGCT	59.758	50.000	2.05	0.00	35.38	4.58
1551	2040	2.040412	GAGGAAGAAAAAGCAGGGAGGA	59.960	50.000	0.00	0.00	0.00	3.71
1559	2048	0.543174	AAGCAGGGAGGAAGAGACGT	60.543	55.000	0.00	0.00	0.00	4.34
1620	2173	1.525077	CGCTAGCGAGAGGAGAGGT	60.525	63.158	32.98	0.00	42.83	3.85
1710	2263	9.284968	CTCCTTTTTCCTCACTTAACTGATAAA	57.715	33.333	0.00	0.00	0.00	1.40
1939	2494	1.270625	TGACACAGAGGTAAAAGGCCG	60.271	52.381	0.00	0.00	0.00	6.13
1940	2495	1.001633	GACACAGAGGTAAAAGGCCGA	59.998	52.381	0.00	0.00	0.00	5.54
2081	2637	1.202976	ACCAAGTTGGAGCTTGAGCAT	60.203	47.619	28.80	0.00	46.34	3.79
2232	4713	6.387041	AAGATAACACAAGCATGATGATGG	57.613	37.500	0.00	0.00	0.00	3.51
2306	4871	0.473326	GGAAGGCATCTGGAGCATCT	59.527	55.000	0.00	0.00	33.73	2.90
2324	4889	1.911357	TCTGTCTCAGGGCATCACAAT	59.089	47.619	0.00	0.00	31.51	2.71
2325	4890	2.014857	CTGTCTCAGGGCATCACAATG	58.985	52.381	0.00	0.00	35.87	2.82
2333	4898	2.645628	CATCACAATGCGCGCGAC	60.646	61.111	37.18	24.92	0.00	5.19
2334	4899	3.864686	ATCACAATGCGCGCGACC	61.865	61.111	37.18	18.14	0.00	4.79
2338	4903	4.437959	CAATGCGCGCGACCGAAA	62.438	61.111	37.18	11.18	36.29	3.46
2339	4904	3.496131	AATGCGCGCGACCGAAAT	61.496	55.556	37.18	13.10	36.29	2.17
2340	4905	3.434566	AATGCGCGCGACCGAAATC	62.435	57.895	37.18	13.89	36.29	2.17
2347	4912	2.995482	CGACCGAAATCGCTTCCG	59.005	61.111	0.00	0.00	38.18	4.30
2348	4913	2.701606	GACCGAAATCGCTTCCGC	59.298	61.111	0.00	0.00	38.18	5.54
2349	4914	2.810012	GACCGAAATCGCTTCCGCC	61.810	63.158	0.00	0.00	38.18	6.13
2350	4915	3.573491	CCGAAATCGCTTCCGCCC	61.573	66.667	0.00	0.00	38.18	6.13
2351	4916	2.817834	CGAAATCGCTTCCGCCCA	60.818	61.111	0.00	0.00	0.00	5.36
2352	4917	2.791927	GAAATCGCTTCCGCCCAC	59.208	61.111	0.00	0.00	0.00	4.61
2353	4918	1.745489	GAAATCGCTTCCGCCCACT	60.745	57.895	0.00	0.00	0.00	4.00
2354	4919	0.461339	GAAATCGCTTCCGCCCACTA	60.461	55.000	0.00	0.00	0.00	2.74
2355	4920	0.180406	AAATCGCTTCCGCCCACTAT	59.820	50.000	0.00	0.00	0.00	2.12
2356	4921	0.180406	AATCGCTTCCGCCCACTATT	59.820	50.000	0.00	0.00	0.00	1.73
2357	4922	0.180406	ATCGCTTCCGCCCACTATTT	59.820	50.000	0.00	0.00	0.00	1.40
2358	4923	0.742990	TCGCTTCCGCCCACTATTTG	60.743	55.000	0.00	0.00	0.00	2.32
2359	4924	1.714899	CGCTTCCGCCCACTATTTGG	61.715	60.000	0.00	0.00	46.47	3.28
2375	4940	2.704719	TGGGACACCAGGGATTACC	58.295	57.895	0.00	0.00	43.37	2.85
2376	4941	0.178858	TGGGACACCAGGGATTACCA	60.179	55.000	0.00	0.00	43.37	3.25
2377	4942	1.222567	GGGACACCAGGGATTACCAT	58.777	55.000	0.00	0.00	43.89	3.55
2378	4943	1.143073	GGGACACCAGGGATTACCATC	59.857	57.143	0.00	0.00	43.89	3.51
2379	4944	4.149654	GGGACACCAGGGATTACCATCC	62.150	59.091	0.00	0.00	43.89	3.51
2386	4951	1.460699	GGATTACCATCCTGCCCCC	59.539	63.158	0.00	0.00	45.41	5.40
2387	4952	1.073199	GATTACCATCCTGCCCCCG	59.927	63.158	0.00	0.00	0.00	5.73
2388	4953	1.385347	ATTACCATCCTGCCCCCGA	60.385	57.895	0.00	0.00	0.00	5.14
2389	4954	1.705997	ATTACCATCCTGCCCCCGAC	61.706	60.000	0.00	0.00	0.00	4.79
2397	4962	4.059304	TGCCCCCGACCCGTAGTA	62.059	66.667	0.00	0.00	0.00	1.82
2398	4963	3.222121	GCCCCCGACCCGTAGTAG	61.222	72.222	0.00	0.00	0.00	2.57
2399	4964	2.520260	CCCCCGACCCGTAGTAGG	60.520	72.222	0.00	0.00	40.77	3.18
2400	4965	2.276740	CCCCGACCCGTAGTAGGT	59.723	66.667	2.17	0.00	39.52	3.08
2407	4972	3.900966	GACCCGTAGTAGGTCCAAAAT	57.099	47.619	0.00	0.00	46.85	1.82
2408	4973	4.212143	GACCCGTAGTAGGTCCAAAATT	57.788	45.455	0.00	0.00	46.85	1.82
2409	4974	4.582869	GACCCGTAGTAGGTCCAAAATTT	58.417	43.478	0.00	0.00	46.85	1.82
2410	4975	5.733676	GACCCGTAGTAGGTCCAAAATTTA	58.266	41.667	0.00	0.00	46.85	1.40
2411	4976	6.125589	ACCCGTAGTAGGTCCAAAATTTAA	57.874	37.500	0.00	0.00	28.99	1.52
2412	4977	6.175471	ACCCGTAGTAGGTCCAAAATTTAAG	58.825	40.000	0.00	0.00	28.99	1.85
2413	4978	6.013466	ACCCGTAGTAGGTCCAAAATTTAAGA	60.013	38.462	0.00	0.00	28.99	2.10
2414	4979	6.537660	CCCGTAGTAGGTCCAAAATTTAAGAG	59.462	42.308	0.00	0.00	0.00	2.85
2415	4980	6.537660	CCGTAGTAGGTCCAAAATTTAAGAGG	59.462	42.308	0.00	0.00	0.00	3.69
2416	4981	6.537660	CGTAGTAGGTCCAAAATTTAAGAGGG	59.462	42.308	0.00	0.00	0.00	4.30
2417	4982	5.827756	AGTAGGTCCAAAATTTAAGAGGGG	58.172	41.667	0.00	0.00	0.00	4.79
2418	4983	4.061131	AGGTCCAAAATTTAAGAGGGGG	57.939	45.455	0.00	0.00	0.00	5.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	5.836347	TCTCTAGTGCATGCATAACTACAG	58.164	41.667	25.64	16.47	0.00	2.74
29	30	7.571026	CATTTCTCTAGTGCATGCATAACTAC	58.429	38.462	25.64	9.80	0.00	2.73
75	78	1.388547	TCAGCCCGCATATGTTTTCC	58.611	50.000	4.29	0.00	0.00	3.13
76	79	3.119495	ACTTTCAGCCCGCATATGTTTTC	60.119	43.478	4.29	0.00	0.00	2.29
218	229	4.214383	CCATCGCAGCGCACGAAG	62.214	66.667	25.72	21.45	43.71	3.79
330	352	2.119391	AAATCCCCAAGGCCGCAA	59.881	55.556	0.00	0.00	0.00	4.85
338	360	2.716424	AGACCAGAGTTCAAATCCCCAA	59.284	45.455	0.00	0.00	0.00	4.12
359	381	3.636231	CTGCACTTCCACCCGGGA	61.636	66.667	32.02	0.04	46.61	5.14
572	602	2.579873	CGCCCCATCTGAAATCAATCT	58.420	47.619	0.00	0.00	0.00	2.40
580	610	1.031571	GTCATTGCGCCCCATCTGAA	61.032	55.000	4.18	0.00	0.00	3.02
959	1322	2.297895	ACACCCATGCGCCTCCTAA	61.298	57.895	4.18	0.00	0.00	2.69
960	1323	2.687200	ACACCCATGCGCCTCCTA	60.687	61.111	4.18	0.00	0.00	2.94
1024	1387	2.203596	ACCGTGGTCGTCTTCCCT	60.204	61.111	0.00	0.00	35.01	4.20
1255	1666	2.357517	CGCGCACCAAGAGACCTT	60.358	61.111	8.75	0.00	0.00	3.50
1431	1898	1.494721	CTCCTATAAAGCCCCAGCCAA	59.505	52.381	0.00	0.00	41.25	4.52
1551	2040	1.071471	CCCACCTGCAACGTCTCTT	59.929	57.895	0.00	0.00	0.00	2.85
1965	2520	4.898014	TCCCCATCCTCCATTAATGTTT	57.102	40.909	14.25	0.00	0.00	2.83
2081	2637	3.245264	CCTCTTGCCTCCCCTTTTTCTTA	60.245	47.826	0.00	0.00	0.00	2.10
2232	4713	9.531942	TGCCATGATTGTCATAATAAATTGTTC	57.468	29.630	0.00	0.00	34.28	3.18
2306	4871	2.118313	CATTGTGATGCCCTGAGACA	57.882	50.000	0.00	0.00	0.00	3.41
2350	4915	1.633432	TCCCTGGTGTCCCAAATAGTG	59.367	52.381	0.00	0.00	41.27	2.74
2351	4916	2.053747	TCCCTGGTGTCCCAAATAGT	57.946	50.000	0.00	0.00	41.27	2.12
2352	4917	3.669939	AATCCCTGGTGTCCCAAATAG	57.330	47.619	0.00	0.00	41.27	1.73
2353	4918	3.203487	GGTAATCCCTGGTGTCCCAAATA	59.797	47.826	0.00	0.00	41.27	1.40
2354	4919	2.024369	GGTAATCCCTGGTGTCCCAAAT	60.024	50.000	0.00	0.00	41.27	2.32
2355	4920	1.356398	GGTAATCCCTGGTGTCCCAAA	59.644	52.381	0.00	0.00	41.27	3.28
2356	4921	0.996583	GGTAATCCCTGGTGTCCCAA	59.003	55.000	0.00	0.00	41.27	4.12
2357	4922	0.178858	TGGTAATCCCTGGTGTCCCA	60.179	55.000	0.00	0.00	38.87	4.37
2358	4923	1.143073	GATGGTAATCCCTGGTGTCCC	59.857	57.143	0.00	0.00	0.00	4.46
2359	4924	1.143073	GGATGGTAATCCCTGGTGTCC	59.857	57.143	0.00	0.00	46.03	4.02
2360	4925	2.640316	GGATGGTAATCCCTGGTGTC	57.360	55.000	0.00	0.00	46.03	3.67
2369	4934	1.073199	CGGGGGCAGGATGGTAATC	59.927	63.158	0.00	0.00	35.86	1.75
2370	4935	1.385347	TCGGGGGCAGGATGGTAAT	60.385	57.895	0.00	0.00	35.86	1.89
2371	4936	2.041430	TCGGGGGCAGGATGGTAA	59.959	61.111	0.00	0.00	35.86	2.85
2372	4937	2.766651	GTCGGGGGCAGGATGGTA	60.767	66.667	0.00	0.00	35.86	3.25
2380	4945	4.059304	TACTACGGGTCGGGGGCA	62.059	66.667	0.00	0.00	0.00	5.36
2381	4946	3.222121	CTACTACGGGTCGGGGGC	61.222	72.222	0.00	0.00	0.00	5.80
2382	4947	2.520260	CCTACTACGGGTCGGGGG	60.520	72.222	0.00	0.00	0.00	5.40
2383	4948	1.825622	GACCTACTACGGGTCGGGG	60.826	68.421	0.00	0.00	42.84	5.73
2384	4949	3.833304	GACCTACTACGGGTCGGG	58.167	66.667	0.00	4.56	42.84	5.14
2388	4953	4.645863	AAATTTTGGACCTACTACGGGT	57.354	40.909	0.00	0.00	40.13	5.28
2389	4954	6.408869	TCTTAAATTTTGGACCTACTACGGG	58.591	40.000	0.00	0.00	0.00	5.28
2390	4955	6.537660	CCTCTTAAATTTTGGACCTACTACGG	59.462	42.308	0.00	0.00	0.00	4.02
2391	4956	6.537660	CCCTCTTAAATTTTGGACCTACTACG	59.462	42.308	0.00	0.00	0.00	3.51
2392	4957	6.827251	CCCCTCTTAAATTTTGGACCTACTAC	59.173	42.308	0.00	0.00	0.00	2.73
2393	4958	6.069264	CCCCCTCTTAAATTTTGGACCTACTA	60.069	42.308	0.00	0.00	0.00	1.82
2394	4959	5.281558	CCCCCTCTTAAATTTTGGACCTACT	60.282	44.000	0.00	0.00	0.00	2.57
2395	4960	4.954202	CCCCCTCTTAAATTTTGGACCTAC	59.046	45.833	0.00	0.00	0.00	3.18
2396	4961	5.201363	CCCCCTCTTAAATTTTGGACCTA	57.799	43.478	0.00	0.00	0.00	3.08
2397	4962	4.061131	CCCCCTCTTAAATTTTGGACCT	57.939	45.455	0.00	0.00	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.