Multiple sequence alignment - TraesCS5A01G135500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G135500 chr5A 100.000 5804 0 0 1 5804 306495703 306489900 0.000000e+00 10719.0
1 TraesCS5A01G135500 chr5A 100.000 582 0 0 6219 6800 306489485 306488904 0.000000e+00 1075.0
2 TraesCS5A01G135500 chr5A 91.975 162 12 1 2281 2441 558675497 558675658 6.860000e-55 226.0
3 TraesCS5A01G135500 chr5A 93.478 46 2 1 4851 4896 136984893 136984937 4.400000e-07 67.6
4 TraesCS5A01G135500 chr5B 94.033 3117 117 41 872 3922 251562876 251559763 0.000000e+00 4662.0
5 TraesCS5A01G135500 chr5B 96.589 645 16 4 4182 4823 251559362 251558721 0.000000e+00 1064.0
6 TraesCS5A01G135500 chr5B 97.635 592 13 1 5213 5803 251558600 251558009 0.000000e+00 1014.0
7 TraesCS5A01G135500 chr5B 85.746 898 78 19 1 880 251573270 251572405 0.000000e+00 904.0
8 TraesCS5A01G135500 chr5B 91.922 359 14 5 6220 6573 251558007 251557659 7.930000e-134 488.0
9 TraesCS5A01G135500 chr5B 92.105 114 9 0 6598 6711 251557665 251557552 1.960000e-35 161.0
10 TraesCS5A01G135500 chr5D 95.903 1977 55 6 1980 3947 228063472 228061513 0.000000e+00 3179.0
11 TraesCS5A01G135500 chr5D 90.708 2034 132 28 1 1992 228065621 228063603 0.000000e+00 2656.0
12 TraesCS5A01G135500 chr5D 95.677 879 28 6 4929 5803 228060470 228059598 0.000000e+00 1404.0
13 TraesCS5A01G135500 chr5D 96.904 646 13 5 4179 4821 228061112 228060471 0.000000e+00 1075.0
14 TraesCS5A01G135500 chr5D 95.105 286 14 0 6280 6565 228059371 228059086 1.040000e-122 451.0
15 TraesCS5A01G135500 chr5D 87.037 270 30 1 3942 4211 498779161 498779425 3.990000e-77 300.0
16 TraesCS5A01G135500 chr5D 93.269 104 6 1 6608 6711 228059078 228058976 1.180000e-32 152.0
17 TraesCS5A01G135500 chr5D 94.030 67 3 1 6220 6285 228059596 228059530 4.340000e-17 100.0
18 TraesCS5A01G135500 chr5D 84.524 84 10 3 6708 6789 431905662 431905744 5.650000e-11 80.5
19 TraesCS5A01G135500 chr5D 100.000 36 0 0 4897 4932 2138659 2138694 4.400000e-07 67.6
20 TraesCS5A01G135500 chr5D 100.000 36 0 0 4897 4932 432992164 432992199 4.400000e-07 67.6
21 TraesCS5A01G135500 chr5D 85.075 67 8 2 6709 6774 542610849 542610914 4.400000e-07 67.6
22 TraesCS5A01G135500 chr1D 89.313 262 28 0 3950 4211 58580569 58580830 5.080000e-86 329.0
23 TraesCS5A01G135500 chr1D 90.419 167 12 4 2270 2435 387944773 387944936 4.130000e-52 217.0
24 TraesCS5A01G135500 chr1D 95.652 46 1 1 4851 4896 332264925 332264969 9.460000e-09 73.1
25 TraesCS5A01G135500 chr7A 89.286 252 23 2 3962 4212 462341621 462341373 5.120000e-81 313.0
26 TraesCS5A01G135500 chr7A 100.000 37 0 0 4897 4933 138348323 138348287 1.220000e-07 69.4
27 TraesCS5A01G135500 chr7A 100.000 36 0 0 4897 4932 638844403 638844368 4.400000e-07 67.6
28 TraesCS5A01G135500 chr6B 89.958 239 19 4 3977 4212 57702061 57701825 3.080000e-78 303.0
29 TraesCS5A01G135500 chr6B 88.306 248 24 4 3965 4211 64857113 64856870 6.670000e-75 292.0
30 TraesCS5A01G135500 chr6B 77.622 143 24 6 701 841 454070293 454070157 5.650000e-11 80.5
31 TraesCS5A01G135500 chr6B 93.478 46 2 1 4851 4896 590564981 590565025 4.400000e-07 67.6
32 TraesCS5A01G135500 chr4A 87.500 264 32 1 3949 4212 742458027 742457765 3.080000e-78 303.0
33 TraesCS5A01G135500 chr4A 88.764 178 17 3 2281 2456 150653474 150653298 1.490000e-51 215.0
34 TraesCS5A01G135500 chr4A 89.320 103 9 2 5124 5226 700021978 700022078 1.990000e-25 128.0
35 TraesCS5A01G135500 chr4A 86.842 114 10 4 5117 5226 663252130 663252018 9.260000e-24 122.0
36 TraesCS5A01G135500 chr3A 90.393 229 19 3 3954 4182 556284111 556284336 1.430000e-76 298.0
37 TraesCS5A01G135500 chr3A 91.411 163 12 2 2281 2442 726769128 726768967 8.880000e-54 222.0
38 TraesCS5A01G135500 chr3A 91.358 162 13 1 2281 2441 607058572 607058411 3.190000e-53 220.0
39 TraesCS5A01G135500 chr1B 86.891 267 30 2 3946 4212 664021335 664021074 1.850000e-75 294.0
40 TraesCS5A01G135500 chr1B 87.273 110 9 4 5121 5226 492303871 492303979 3.330000e-23 121.0
41 TraesCS5A01G135500 chr1B 95.652 46 1 1 4851 4896 95235191 95235235 9.460000e-09 73.1
42 TraesCS5A01G135500 chr6A 86.466 266 34 2 3949 4214 27087177 27086914 2.400000e-74 291.0
43 TraesCS5A01G135500 chr6A 95.652 46 1 1 4851 4896 17663903 17663859 9.460000e-09 73.1
44 TraesCS5A01G135500 chr4D 89.595 173 17 1 2279 2450 12520303 12520131 1.150000e-52 219.0
45 TraesCS5A01G135500 chr4D 100.000 37 0 0 4897 4933 75783066 75783102 1.220000e-07 69.4
46 TraesCS5A01G135500 chr4D 100.000 28 0 0 4821 4848 490943685 490943712 1.200000e-02 52.8
47 TraesCS5A01G135500 chr4B 90.419 167 15 1 2277 2442 28724308 28724142 1.150000e-52 219.0
48 TraesCS5A01G135500 chrUn 92.708 96 7 0 5131 5226 11850068 11850163 9.200000e-29 139.0
49 TraesCS5A01G135500 chrUn 91.919 99 8 0 5131 5229 351755287 351755189 9.200000e-29 139.0
50 TraesCS5A01G135500 chrUn 91.919 99 8 0 5131 5229 380526192 380526094 9.200000e-29 139.0
51 TraesCS5A01G135500 chrUn 93.478 46 2 1 4851 4896 304744353 304744397 4.400000e-07 67.6
52 TraesCS5A01G135500 chrUn 93.478 46 2 1 4851 4896 322088710 322088666 4.400000e-07 67.6
53 TraesCS5A01G135500 chr2A 91.176 102 8 1 5125 5226 766966497 766966397 3.310000e-28 137.0
54 TraesCS5A01G135500 chr7D 89.320 103 9 2 5124 5226 29293774 29293674 1.990000e-25 128.0
55 TraesCS5A01G135500 chr7D 87.500 72 3 3 4865 4933 632024670 632024602 2.030000e-10 78.7
56 TraesCS5A01G135500 chr6D 88.889 90 6 4 6709 6797 36547558 36547644 2.590000e-19 108.0
57 TraesCS5A01G135500 chr6D 87.778 90 11 0 6708 6797 404320289 404320378 9.330000e-19 106.0
58 TraesCS5A01G135500 chr3D 81.818 132 19 2 283 413 537919138 537919265 9.330000e-19 106.0
59 TraesCS5A01G135500 chr2B 75.000 248 42 12 600 840 109302357 109302123 5.610000e-16 97.1
60 TraesCS5A01G135500 chr2B 73.220 295 58 16 474 754 705224617 705224904 3.380000e-13 87.9
61 TraesCS5A01G135500 chr2B 90.909 55 3 2 373 427 347101238 347101290 9.460000e-09 73.1
62 TraesCS5A01G135500 chr1A 95.652 46 1 1 4851 4896 499947394 499947350 9.460000e-09 73.1
63 TraesCS5A01G135500 chr7B 93.333 45 1 2 4897 4940 457401446 457401403 1.580000e-06 65.8
64 TraesCS5A01G135500 chr7B 100.000 29 0 0 4821 4849 371732222 371732250 3.000000e-03 54.7
65 TraesCS5A01G135500 chr3B 93.333 45 2 1 4897 4941 303626052 303626095 1.580000e-06 65.8
66 TraesCS5A01G135500 chr3B 88.000 50 4 2 4897 4945 820454629 820454581 2.650000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G135500 chr5A 306488904 306495703 6799 True 5897.000000 10719 100.000000 1 6800 2 chr5A.!!$R1 6799
1 TraesCS5A01G135500 chr5B 251557552 251562876 5324 True 1477.800000 4662 94.456800 872 6711 5 chr5B.!!$R2 5839
2 TraesCS5A01G135500 chr5B 251572405 251573270 865 True 904.000000 904 85.746000 1 880 1 chr5B.!!$R1 879
3 TraesCS5A01G135500 chr5D 228058976 228065621 6645 True 1288.142857 3179 94.513714 1 6711 7 chr5D.!!$R1 6710


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 679 0.036010 ACTGCCCACGAGAGGATTTG 60.036 55.0 0.00 0.0 0.00 2.32 F
1047 1076 0.246635 CCACCATCGTCTTCTTCCGT 59.753 55.0 0.00 0.0 0.00 4.69 F
1195 1225 0.396435 ACGTCAGCAACAGGATGGAA 59.604 50.0 0.00 0.0 43.62 3.53 F
1512 1552 0.397254 AGTACCTGCTCGTATGGCCT 60.397 55.0 3.32 0.0 0.00 5.19 F
2603 2805 1.179814 AGGCTCTGTTCGGTTCGACT 61.180 55.0 0.00 0.0 34.89 4.18 F
4277 4851 0.988832 AGGATGGGCGGTGAGTTAAA 59.011 50.0 0.00 0.0 0.00 1.52 F
4863 5469 0.034337 CAAGAACCCTCCGTCCGAAA 59.966 55.0 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1749 1.000233 CACAGGTAACGTGACGACCG 61.000 60.000 13.70 8.82 41.53 4.79 R
2473 2671 1.197721 GGCAAACAGTGTCTGATTCGG 59.802 52.381 0.00 0.00 35.18 4.30 R
3120 3325 4.316722 CGACGAGATATGCTTCTTTGAACG 60.317 45.833 0.00 0.00 0.00 3.95 R
3276 3481 2.164219 CCAGGCTGCAAATGTATTTCGT 59.836 45.455 9.56 0.00 0.00 3.85 R
4286 4860 0.923358 ACTCAAGGGACCCACAAACA 59.077 50.000 14.60 0.00 0.00 2.83 R
5532 6142 0.739813 GTCGTCCTGCGCCAAACTAT 60.740 55.000 4.18 0.00 41.07 2.12 R
6713 7493 0.325296 TTGGGGACGTAGCTGGAGAT 60.325 55.000 0.00 0.00 0.00 2.75 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 141 5.533482 CCGACGGATCTATTCAAAAGATCT 58.467 41.667 8.64 0.00 45.74 2.75
140 142 5.631512 CCGACGGATCTATTCAAAAGATCTC 59.368 44.000 8.64 3.63 45.74 2.75
173 175 3.804325 AGTCATCCAATCTAACGCAATCG 59.196 43.478 0.00 0.00 42.43 3.34
186 188 2.813908 AATCGTCCGGTCAAGCGC 60.814 61.111 0.00 0.00 0.00 5.92
204 206 1.401409 CGCCATCGTCACTTTTGCAAT 60.401 47.619 0.00 0.00 0.00 3.56
242 244 0.258774 ACCCTTCTGCAACACTGGTT 59.741 50.000 0.00 0.00 37.87 3.67
313 317 1.254284 CCGCCCCCTTGTTGCAAATA 61.254 55.000 0.00 0.00 0.00 1.40
316 320 2.631267 GCCCCCTTGTTGCAAATATTG 58.369 47.619 0.00 0.00 0.00 1.90
321 325 5.062528 CCCCTTGTTGCAAATATTGTTTGT 58.937 37.500 0.00 0.00 0.00 2.83
369 373 2.039974 ACCGCATCGCATTGCTTGA 61.040 52.632 7.12 0.00 40.54 3.02
412 416 1.133809 CAGTCTGGTTGGGGAAGGGA 61.134 60.000 0.00 0.00 0.00 4.20
415 419 1.140134 TCTGGTTGGGGAAGGGAAGG 61.140 60.000 0.00 0.00 0.00 3.46
418 422 1.432023 GGTTGGGGAAGGGAAGGTGA 61.432 60.000 0.00 0.00 0.00 4.02
447 452 2.825387 GCGATGCAGCATGGGTCA 60.825 61.111 14.22 0.00 35.86 4.02
454 459 1.035932 GCAGCATGGGTCAGAGCATT 61.036 55.000 1.20 0.00 35.86 3.56
485 502 2.582226 GACGATCCGATGTGCGCA 60.582 61.111 5.66 5.66 39.11 6.09
605 624 0.166814 GAGCAACACATGAAGGCGTC 59.833 55.000 0.00 0.00 0.00 5.19
625 644 2.970639 CTTCACGGGGAGCTCGAA 59.029 61.111 7.83 4.27 0.00 3.71
659 678 0.693049 AACTGCCCACGAGAGGATTT 59.307 50.000 0.00 0.00 0.00 2.17
660 679 0.036010 ACTGCCCACGAGAGGATTTG 60.036 55.000 0.00 0.00 0.00 2.32
711 730 0.755686 GGTTGGGGATTGCAACAACA 59.244 50.000 23.86 10.67 43.61 3.33
712 731 1.270252 GGTTGGGGATTGCAACAACAG 60.270 52.381 23.86 0.00 43.61 3.16
733 752 4.453478 CAGCTCAGTTGCAAAGTCTATTCA 59.547 41.667 0.00 0.00 34.99 2.57
750 769 9.406113 AGTCTATTCAAGGTAATACGTTACTCT 57.594 33.333 0.00 0.00 40.06 3.24
753 772 6.741992 TTCAAGGTAATACGTTACTCTCGA 57.258 37.500 0.00 0.00 40.06 4.04
775 794 8.126871 TCGAACGATCTGATTAAAATTCGATT 57.873 30.769 15.17 3.44 41.05 3.34
824 844 1.840181 GCGCATCGTTATCAGTCAGA 58.160 50.000 0.30 0.00 0.00 3.27
938 960 8.722480 AACATAATTCTCTCGAACATTCATCA 57.278 30.769 0.00 0.00 30.67 3.07
1047 1076 0.246635 CCACCATCGTCTTCTTCCGT 59.753 55.000 0.00 0.00 0.00 4.69
1080 1109 4.787280 CGACTCTGCCCTCCCCCT 62.787 72.222 0.00 0.00 0.00 4.79
1164 1194 4.496927 CGCCCGCTCCAAAATGGC 62.497 66.667 0.00 0.00 37.47 4.40
1174 1204 0.897863 CCAAAATGGCGGAGGTGGAA 60.898 55.000 0.00 0.00 0.00 3.53
1195 1225 0.396435 ACGTCAGCAACAGGATGGAA 59.604 50.000 0.00 0.00 43.62 3.53
1261 1291 2.592993 CCCCGCCCTCTTTGACAGA 61.593 63.158 0.00 0.00 0.00 3.41
1343 1382 2.570284 CCGGCCCTTGGTTGGTTTC 61.570 63.158 0.00 0.00 0.00 2.78
1344 1383 2.914908 CGGCCCTTGGTTGGTTTCG 61.915 63.158 0.00 0.00 0.00 3.46
1345 1384 2.338620 GCCCTTGGTTGGTTTCGC 59.661 61.111 0.00 0.00 0.00 4.70
1346 1385 2.642700 CCCTTGGTTGGTTTCGCG 59.357 61.111 0.00 0.00 0.00 5.87
1347 1386 1.894756 CCCTTGGTTGGTTTCGCGA 60.895 57.895 3.71 3.71 0.00 5.87
1348 1387 1.281656 CCTTGGTTGGTTTCGCGAC 59.718 57.895 9.15 0.00 0.00 5.19
1349 1388 1.281656 CTTGGTTGGTTTCGCGACC 59.718 57.895 9.15 9.62 40.23 4.79
1360 1400 4.436998 CGCGACCCCTCCTCACAC 62.437 72.222 0.00 0.00 0.00 3.82
1512 1552 0.397254 AGTACCTGCTCGTATGGCCT 60.397 55.000 3.32 0.00 0.00 5.19
1516 1556 4.221422 TGCTCGTATGGCCTCCGC 62.221 66.667 3.32 0.00 0.00 5.54
1701 1749 1.200020 CGCAGGACCATTTGAAGGTTC 59.800 52.381 0.00 0.00 40.09 3.62
1875 1923 1.338107 TTCCAGAGGACGAGCTTCAA 58.662 50.000 0.00 0.00 0.00 2.69
1943 1991 1.677552 AGGTTTACCTCTGCACCCG 59.322 57.895 0.00 0.00 44.77 5.28
2045 2242 9.213777 TCAAACTGTGGGATACTTATATCTCTT 57.786 33.333 0.00 0.00 38.89 2.85
2339 2536 2.294233 TCCAATACGGACTACATACGGC 59.706 50.000 0.00 0.00 39.64 5.68
2420 2618 8.841300 CCTATTGGAATCTCTAAAAAGGCTTAC 58.159 37.037 0.00 0.00 34.57 2.34
2435 2633 7.809546 AAAGGCTTACATTTAGGAATAGAGC 57.190 36.000 0.00 0.00 0.00 4.09
2473 2671 7.608308 TTTTGCATGGCCTGTTAATAATTTC 57.392 32.000 3.32 0.00 0.00 2.17
2493 2691 1.197721 CCGAATCAGACACTGTTTGCC 59.802 52.381 0.00 0.00 32.61 4.52
2595 2797 7.478322 TGTACTAGTTTATAAGGCTCTGTTCG 58.522 38.462 0.00 0.00 0.00 3.95
2603 2805 1.179814 AGGCTCTGTTCGGTTCGACT 61.180 55.000 0.00 0.00 34.89 4.18
2785 2989 2.941453 TTCGCACACTATCAGGTCTC 57.059 50.000 0.00 0.00 0.00 3.36
3070 3274 8.026396 TGTTCCCCATAGTAGTCCTTTTATAC 57.974 38.462 0.00 0.00 0.00 1.47
3120 3325 8.697292 AGGTGAATAGACAAAGTCTAGATAACC 58.303 37.037 15.19 15.19 46.35 2.85
3276 3481 6.430925 CACTCAATCCTTGTACTGATCCAAAA 59.569 38.462 0.00 0.00 0.00 2.44
3316 3521 5.577945 GCCTGGTTGATGTTATGTGAAAATG 59.422 40.000 0.00 0.00 0.00 2.32
3319 3524 7.329226 CCTGGTTGATGTTATGTGAAAATGTTC 59.671 37.037 0.00 0.00 0.00 3.18
3494 3699 9.661563 ATCTGTCAAAACTTACGGTATCAATTA 57.338 29.630 0.00 0.00 0.00 1.40
3575 3780 9.604626 CAGTTTGTGCTCTTTTCTATTTTCTAG 57.395 33.333 0.00 0.00 0.00 2.43
3874 4111 9.851686 TTCTACATACCATTTCTTGAATATGCT 57.148 29.630 0.00 0.00 31.98 3.79
3959 4532 5.318630 TGTGTTAAACAAGTAATCCCTCCC 58.681 41.667 0.00 0.00 35.24 4.30
4142 4715 6.619801 ATTGATATCTTTTCCTACAACCGC 57.380 37.500 3.98 0.00 0.00 5.68
4143 4716 5.092554 TGATATCTTTTCCTACAACCGCA 57.907 39.130 3.98 0.00 0.00 5.69
4144 4717 5.116180 TGATATCTTTTCCTACAACCGCAG 58.884 41.667 3.98 0.00 0.00 5.18
4145 4718 2.922740 TCTTTTCCTACAACCGCAGT 57.077 45.000 0.00 0.00 0.00 4.40
4146 4719 2.762745 TCTTTTCCTACAACCGCAGTC 58.237 47.619 0.00 0.00 0.00 3.51
4147 4720 2.103432 TCTTTTCCTACAACCGCAGTCA 59.897 45.455 0.00 0.00 0.00 3.41
4148 4721 2.623878 TTTCCTACAACCGCAGTCAA 57.376 45.000 0.00 0.00 0.00 3.18
4149 4722 2.623878 TTCCTACAACCGCAGTCAAA 57.376 45.000 0.00 0.00 0.00 2.69
4150 4723 1.873698 TCCTACAACCGCAGTCAAAC 58.126 50.000 0.00 0.00 0.00 2.93
4151 4724 1.414919 TCCTACAACCGCAGTCAAACT 59.585 47.619 0.00 0.00 0.00 2.66
4152 4725 2.158871 TCCTACAACCGCAGTCAAACTT 60.159 45.455 0.00 0.00 0.00 2.66
4153 4726 2.616842 CCTACAACCGCAGTCAAACTTT 59.383 45.455 0.00 0.00 0.00 2.66
4154 4727 3.810941 CCTACAACCGCAGTCAAACTTTA 59.189 43.478 0.00 0.00 0.00 1.85
4155 4728 3.685836 ACAACCGCAGTCAAACTTTAC 57.314 42.857 0.00 0.00 0.00 2.01
4156 4729 3.275999 ACAACCGCAGTCAAACTTTACT 58.724 40.909 0.00 0.00 0.00 2.24
4157 4730 4.444536 ACAACCGCAGTCAAACTTTACTA 58.555 39.130 0.00 0.00 0.00 1.82
4158 4731 4.271776 ACAACCGCAGTCAAACTTTACTAC 59.728 41.667 0.00 0.00 0.00 2.73
4159 4732 3.054878 ACCGCAGTCAAACTTTACTACG 58.945 45.455 0.00 0.00 33.30 3.51
4160 4733 3.054878 CCGCAGTCAAACTTTACTACGT 58.945 45.455 0.00 0.00 31.93 3.57
4161 4734 3.492011 CCGCAGTCAAACTTTACTACGTT 59.508 43.478 0.00 0.00 31.93 3.99
4162 4735 4.025480 CCGCAGTCAAACTTTACTACGTTT 60.025 41.667 0.00 0.00 31.93 3.60
4163 4736 5.175491 CCGCAGTCAAACTTTACTACGTTTA 59.825 40.000 0.00 0.00 31.93 2.01
4164 4737 6.292274 CCGCAGTCAAACTTTACTACGTTTAA 60.292 38.462 0.00 0.00 31.93 1.52
4165 4738 6.567512 CGCAGTCAAACTTTACTACGTTTAAC 59.432 38.462 0.00 0.00 32.52 2.01
4166 4739 6.847792 GCAGTCAAACTTTACTACGTTTAACC 59.152 38.462 0.00 0.00 32.52 2.85
4167 4740 7.254556 GCAGTCAAACTTTACTACGTTTAACCT 60.255 37.037 0.00 0.00 32.52 3.50
4168 4741 9.248291 CAGTCAAACTTTACTACGTTTAACCTA 57.752 33.333 0.00 0.00 32.52 3.08
4169 4742 9.816354 AGTCAAACTTTACTACGTTTAACCTAA 57.184 29.630 0.00 0.00 32.52 2.69
4173 4746 9.816354 AAACTTTACTACGTTTAACCTAAGACA 57.184 29.630 0.00 0.00 32.05 3.41
4174 4747 9.816354 AACTTTACTACGTTTAACCTAAGACAA 57.184 29.630 0.00 0.00 0.00 3.18
4175 4748 9.816354 ACTTTACTACGTTTAACCTAAGACAAA 57.184 29.630 0.00 0.00 0.00 2.83
4206 4779 3.806958 CGAACTAAAAAGAAACGGAGGC 58.193 45.455 0.00 0.00 0.00 4.70
4207 4780 3.249080 CGAACTAAAAAGAAACGGAGGCA 59.751 43.478 0.00 0.00 0.00 4.75
4263 4837 5.062683 CGTGTCTTTTGTGATGTCTAGGATG 59.937 44.000 0.00 0.00 0.00 3.51
4275 4849 1.063492 TCTAGGATGGGCGGTGAGTTA 60.063 52.381 0.00 0.00 0.00 2.24
4276 4850 1.760613 CTAGGATGGGCGGTGAGTTAA 59.239 52.381 0.00 0.00 0.00 2.01
4277 4851 0.988832 AGGATGGGCGGTGAGTTAAA 59.011 50.000 0.00 0.00 0.00 1.52
4341 4915 8.106247 TGTACATGGAGTTTTCCTTCATTAAC 57.894 34.615 0.00 0.00 44.36 2.01
4848 5454 5.429762 AGATACATCCATTTGAGGGACAAGA 59.570 40.000 0.00 0.00 39.77 3.02
4849 5455 4.387026 ACATCCATTTGAGGGACAAGAA 57.613 40.909 0.00 0.00 39.77 2.52
4850 5456 4.082125 ACATCCATTTGAGGGACAAGAAC 58.918 43.478 0.00 0.00 39.77 3.01
4851 5457 3.154827 TCCATTTGAGGGACAAGAACC 57.845 47.619 0.00 0.00 39.77 3.62
4857 5463 3.479979 GGGACAAGAACCCTCCGT 58.520 61.111 0.00 0.00 43.65 4.69
4858 5464 1.295746 GGGACAAGAACCCTCCGTC 59.704 63.158 0.00 0.00 43.65 4.79
4859 5465 1.295746 GGACAAGAACCCTCCGTCC 59.704 63.158 0.00 0.00 37.58 4.79
4860 5466 1.080025 GACAAGAACCCTCCGTCCG 60.080 63.158 0.00 0.00 0.00 4.79
4861 5467 1.530013 GACAAGAACCCTCCGTCCGA 61.530 60.000 0.00 0.00 0.00 4.55
4862 5468 1.117142 ACAAGAACCCTCCGTCCGAA 61.117 55.000 0.00 0.00 0.00 4.30
4863 5469 0.034337 CAAGAACCCTCCGTCCGAAA 59.966 55.000 0.00 0.00 0.00 3.46
4864 5470 0.760572 AAGAACCCTCCGTCCGAAAA 59.239 50.000 0.00 0.00 0.00 2.29
4865 5471 0.760572 AGAACCCTCCGTCCGAAAAA 59.239 50.000 0.00 0.00 0.00 1.94
4866 5472 1.154197 GAACCCTCCGTCCGAAAAAG 58.846 55.000 0.00 0.00 0.00 2.27
4867 5473 0.887836 AACCCTCCGTCCGAAAAAGC 60.888 55.000 0.00 0.00 0.00 3.51
4868 5474 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
4869 5475 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
4870 5476 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
4871 5477 0.110192 CTCCGTCCGAAAAAGCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
4872 5478 1.081442 CCGTCCGAAAAAGCTTGCC 60.081 57.895 0.00 0.00 0.00 4.52
4873 5479 1.081442 CGTCCGAAAAAGCTTGCCC 60.081 57.895 0.00 0.00 0.00 5.36
4874 5480 1.289066 GTCCGAAAAAGCTTGCCCC 59.711 57.895 0.00 0.00 0.00 5.80
4875 5481 1.152830 TCCGAAAAAGCTTGCCCCT 59.847 52.632 0.00 0.00 0.00 4.79
4876 5482 0.893727 TCCGAAAAAGCTTGCCCCTC 60.894 55.000 0.00 0.00 0.00 4.30
4877 5483 1.178534 CCGAAAAAGCTTGCCCCTCA 61.179 55.000 0.00 0.00 0.00 3.86
4878 5484 0.673437 CGAAAAAGCTTGCCCCTCAA 59.327 50.000 0.00 0.00 0.00 3.02
4879 5485 1.068434 CGAAAAAGCTTGCCCCTCAAA 59.932 47.619 0.00 0.00 33.65 2.69
4880 5486 2.289010 CGAAAAAGCTTGCCCCTCAAAT 60.289 45.455 0.00 0.00 33.65 2.32
4881 5487 2.845363 AAAAGCTTGCCCCTCAAATG 57.155 45.000 0.00 0.00 33.65 2.32
4882 5488 0.978907 AAAGCTTGCCCCTCAAATGG 59.021 50.000 0.00 0.00 33.65 3.16
4883 5489 0.114954 AAGCTTGCCCCTCAAATGGA 59.885 50.000 0.00 0.00 33.65 3.41
4884 5490 0.337428 AGCTTGCCCCTCAAATGGAT 59.663 50.000 0.00 0.00 33.65 3.41
4885 5491 0.462789 GCTTGCCCCTCAAATGGATG 59.537 55.000 0.00 0.00 33.65 3.51
4886 5492 1.856629 CTTGCCCCTCAAATGGATGT 58.143 50.000 0.00 0.00 33.65 3.06
4887 5493 2.949963 GCTTGCCCCTCAAATGGATGTA 60.950 50.000 0.00 0.00 33.65 2.29
4888 5494 2.435372 TGCCCCTCAAATGGATGTAC 57.565 50.000 0.00 0.00 0.00 2.90
4889 5495 1.064017 TGCCCCTCAAATGGATGTACC 60.064 52.381 0.00 0.00 39.54 3.34
4890 5496 1.215423 GCCCCTCAAATGGATGTACCT 59.785 52.381 0.00 0.00 39.86 3.08
4891 5497 2.358195 GCCCCTCAAATGGATGTACCTT 60.358 50.000 0.00 0.00 39.86 3.50
4892 5498 3.117663 GCCCCTCAAATGGATGTACCTTA 60.118 47.826 0.00 0.00 39.86 2.69
4893 5499 4.718961 CCCCTCAAATGGATGTACCTTAG 58.281 47.826 0.00 0.00 39.86 2.18
4894 5500 4.137543 CCCTCAAATGGATGTACCTTAGC 58.862 47.826 0.00 0.00 39.86 3.09
4895 5501 4.385199 CCCTCAAATGGATGTACCTTAGCA 60.385 45.833 0.00 0.00 39.86 3.49
4896 5502 5.192927 CCTCAAATGGATGTACCTTAGCAA 58.807 41.667 0.00 0.00 39.86 3.91
4897 5503 5.829924 CCTCAAATGGATGTACCTTAGCAAT 59.170 40.000 0.00 0.00 39.86 3.56
4898 5504 6.322201 CCTCAAATGGATGTACCTTAGCAATT 59.678 38.462 0.00 0.00 39.86 2.32
4899 5505 7.147846 CCTCAAATGGATGTACCTTAGCAATTT 60.148 37.037 0.00 0.00 39.86 1.82
4900 5506 7.546358 TCAAATGGATGTACCTTAGCAATTTG 58.454 34.615 4.26 4.26 36.62 2.32
4901 5507 7.395772 TCAAATGGATGTACCTTAGCAATTTGA 59.604 33.333 7.88 7.88 39.25 2.69
4911 5517 2.299326 AGCAATTTGAGGGACAAGCT 57.701 45.000 0.00 0.00 39.77 3.74
4921 5527 1.133915 AGGGACAAGCTTTTTCGGACA 60.134 47.619 0.00 0.00 0.00 4.02
4987 5594 7.450124 TCACTGTTTTGGTAAAGTACAAACA 57.550 32.000 0.00 0.55 36.42 2.83
4997 5604 7.936584 TGGTAAAGTACAAACAAATTGAGAGG 58.063 34.615 0.00 0.00 41.85 3.69
5016 5623 7.177878 TGAGAGGAATTAGCAAAATCTCCTTT 58.822 34.615 12.44 9.31 33.42 3.11
5061 5668 3.053693 TGAGATAATGGGTTGAAGGGGTG 60.054 47.826 0.00 0.00 0.00 4.61
5065 5672 1.739608 ATGGGTTGAAGGGGTGCCTT 61.740 55.000 0.00 0.00 0.00 4.35
5121 5728 8.469200 TCCAAATAAAGAGACATGGCTATTTTG 58.531 33.333 25.28 17.15 32.23 2.44
5132 5742 5.045578 ACATGGCTATTTTGTACTCCTGTCT 60.046 40.000 0.00 0.00 0.00 3.41
5150 5760 3.830178 TGTCTGGAAATACTTGTCGGAGA 59.170 43.478 0.00 0.00 0.00 3.71
5151 5761 4.282449 TGTCTGGAAATACTTGTCGGAGAA 59.718 41.667 0.00 0.00 39.69 2.87
5158 5768 6.318900 GGAAATACTTGTCGGAGAAATGGATT 59.681 38.462 0.00 0.00 34.34 3.01
5197 5807 9.915629 AAATACGTCTAGATACATCCATTTCTC 57.084 33.333 0.00 0.00 0.00 2.87
5237 5847 5.424573 GGTGAAGGGAGTACTTGTTAGGTAT 59.575 44.000 0.00 0.00 0.00 2.73
5440 6050 2.417933 GACAATGAGCATCGAACAAGCT 59.582 45.455 4.96 4.96 42.17 3.74
5482 6092 1.259609 TGGAGCAATGGCAAGAAAGG 58.740 50.000 0.00 0.00 44.61 3.11
5532 6142 6.857492 CTCCTCTTGGCACAAGGATGACAA 62.857 50.000 15.42 0.00 43.55 3.18
5666 6276 6.403636 CGGCTAAATTGAAAGCTATTGACACT 60.404 38.462 7.42 0.00 38.80 3.55
5667 6277 6.749118 GGCTAAATTGAAAGCTATTGACACTG 59.251 38.462 7.42 0.00 38.80 3.66
5700 6312 3.943381 ACCACATGTAGCTGATGTTCATG 59.057 43.478 9.81 9.98 40.80 3.07
5768 6380 6.540189 AGTGATCACCAGAGTACATTATTTGC 59.460 38.462 22.21 0.00 0.00 3.68
5803 6415 5.385617 GCGAGTGCATTATTTCATCCATAC 58.614 41.667 0.00 0.00 42.15 2.39
6264 6876 9.642327 CCATATCTCTATTGATATAGCATCTGC 57.358 37.037 0.00 0.00 37.49 4.26
6299 7075 7.323420 TCAACTAATTCTGATCTGTCGATGTT 58.677 34.615 0.00 0.00 0.00 2.71
6327 7103 8.552296 ACCAATCTATATCCTCTGAAGTTGTTT 58.448 33.333 0.00 0.00 0.00 2.83
6341 7117 7.687941 TGAAGTTGTTTTCAGGGATCTTATC 57.312 36.000 0.00 0.00 32.39 1.75
6371 7147 2.020720 TGCCATCAACACTGACGTTTT 58.979 42.857 0.00 0.00 33.30 2.43
6518 7298 1.375908 GTGGCAAGCAGGACATCGA 60.376 57.895 0.00 0.00 0.00 3.59
6565 7345 2.277591 CGGTCGGGTAGGTGGACAA 61.278 63.158 0.00 0.00 32.39 3.18
6573 7353 3.578716 CGGGTAGGTGGACAATCTATGAT 59.421 47.826 0.00 0.00 0.00 2.45
6574 7354 4.561530 CGGGTAGGTGGACAATCTATGATG 60.562 50.000 0.00 0.00 0.00 3.07
6575 7355 4.263068 GGGTAGGTGGACAATCTATGATGG 60.263 50.000 0.00 0.00 0.00 3.51
6576 7356 4.593206 GGTAGGTGGACAATCTATGATGGA 59.407 45.833 0.00 0.00 0.00 3.41
6577 7357 5.071788 GGTAGGTGGACAATCTATGATGGAA 59.928 44.000 0.00 0.00 0.00 3.53
6578 7358 5.301835 AGGTGGACAATCTATGATGGAAG 57.698 43.478 0.00 0.00 0.00 3.46
6579 7359 4.723789 AGGTGGACAATCTATGATGGAAGT 59.276 41.667 0.00 0.00 0.00 3.01
6580 7360 4.818546 GGTGGACAATCTATGATGGAAGTG 59.181 45.833 0.00 0.00 0.00 3.16
6581 7361 5.431765 GTGGACAATCTATGATGGAAGTGT 58.568 41.667 0.00 0.00 0.00 3.55
6582 7362 5.882557 GTGGACAATCTATGATGGAAGTGTT 59.117 40.000 1.20 0.00 0.00 3.32
6583 7363 5.882000 TGGACAATCTATGATGGAAGTGTTG 59.118 40.000 1.20 0.00 0.00 3.33
6584 7364 5.220931 GGACAATCTATGATGGAAGTGTTGC 60.221 44.000 1.20 0.00 0.00 4.17
6585 7365 5.503927 ACAATCTATGATGGAAGTGTTGCT 58.496 37.500 0.00 0.00 0.00 3.91
6586 7366 6.653020 ACAATCTATGATGGAAGTGTTGCTA 58.347 36.000 0.00 0.00 0.00 3.49
6587 7367 7.112122 ACAATCTATGATGGAAGTGTTGCTAA 58.888 34.615 0.00 0.00 0.00 3.09
6588 7368 7.611467 ACAATCTATGATGGAAGTGTTGCTAAA 59.389 33.333 0.00 0.00 0.00 1.85
6589 7369 8.461222 CAATCTATGATGGAAGTGTTGCTAAAA 58.539 33.333 0.00 0.00 0.00 1.52
6590 7370 7.994425 TCTATGATGGAAGTGTTGCTAAAAA 57.006 32.000 0.00 0.00 0.00 1.94
6628 7408 5.221925 TGGAAGTTATCAATCATAGGGGAGC 60.222 44.000 0.00 0.00 0.00 4.70
6645 7425 4.415735 GGGAGCGAATGAAAGATTTTGAC 58.584 43.478 0.00 0.00 0.00 3.18
6712 7492 9.078753 GTAAACAGAATAACTTCAGAGTAGAGC 57.921 37.037 0.00 0.00 34.21 4.09
6713 7493 6.842437 ACAGAATAACTTCAGAGTAGAGCA 57.158 37.500 0.00 0.00 34.21 4.26
6714 7494 7.416964 ACAGAATAACTTCAGAGTAGAGCAT 57.583 36.000 0.00 0.00 34.21 3.79
6715 7495 7.488322 ACAGAATAACTTCAGAGTAGAGCATC 58.512 38.462 0.00 0.00 34.21 3.91
6716 7496 7.341769 ACAGAATAACTTCAGAGTAGAGCATCT 59.658 37.037 0.00 0.00 40.77 2.90
6717 7497 7.862372 CAGAATAACTTCAGAGTAGAGCATCTC 59.138 40.741 0.00 0.00 36.13 2.75
6718 7498 7.014230 AGAATAACTTCAGAGTAGAGCATCTCC 59.986 40.741 0.00 0.00 36.13 3.71
6727 7507 3.560826 GAGCATCTCCAGCTACGTC 57.439 57.895 0.00 0.00 43.58 4.34
6728 7508 0.031449 GAGCATCTCCAGCTACGTCC 59.969 60.000 0.00 0.00 43.58 4.79
6729 7509 1.068250 GCATCTCCAGCTACGTCCC 59.932 63.158 0.00 0.00 0.00 4.46
6730 7510 1.742768 CATCTCCAGCTACGTCCCC 59.257 63.158 0.00 0.00 0.00 4.81
6731 7511 1.043116 CATCTCCAGCTACGTCCCCA 61.043 60.000 0.00 0.00 0.00 4.96
6732 7512 0.325296 ATCTCCAGCTACGTCCCCAA 60.325 55.000 0.00 0.00 0.00 4.12
6733 7513 1.218316 CTCCAGCTACGTCCCCAAC 59.782 63.158 0.00 0.00 0.00 3.77
6734 7514 1.534476 TCCAGCTACGTCCCCAACA 60.534 57.895 0.00 0.00 0.00 3.33
6735 7515 1.079127 CCAGCTACGTCCCCAACAG 60.079 63.158 0.00 0.00 0.00 3.16
6736 7516 1.079127 CAGCTACGTCCCCAACAGG 60.079 63.158 0.00 0.00 0.00 4.00
6737 7517 2.436115 GCTACGTCCCCAACAGGC 60.436 66.667 0.00 0.00 0.00 4.85
6738 7518 2.267961 CTACGTCCCCAACAGGCC 59.732 66.667 0.00 0.00 0.00 5.19
6739 7519 3.324108 TACGTCCCCAACAGGCCC 61.324 66.667 0.00 0.00 0.00 5.80
6740 7520 3.857521 TACGTCCCCAACAGGCCCT 62.858 63.158 0.00 0.00 0.00 5.19
6741 7521 4.410400 CGTCCCCAACAGGCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
6742 7522 4.048470 GTCCCCAACAGGCCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
6743 7523 4.608514 TCCCCAACAGGCCCTCCA 62.609 66.667 0.00 0.00 33.74 3.86
6744 7524 3.589542 CCCCAACAGGCCCTCCAA 61.590 66.667 0.00 0.00 33.74 3.53
6745 7525 2.036256 CCCAACAGGCCCTCCAAG 59.964 66.667 0.00 0.00 33.74 3.61
6746 7526 2.036256 CCAACAGGCCCTCCAAGG 59.964 66.667 0.00 0.00 34.30 3.61
6782 7562 2.746277 CGCCGAAAACCCTCCCAG 60.746 66.667 0.00 0.00 0.00 4.45
6783 7563 2.434774 GCCGAAAACCCTCCCAGT 59.565 61.111 0.00 0.00 0.00 4.00
6784 7564 1.674651 GCCGAAAACCCTCCCAGTC 60.675 63.158 0.00 0.00 0.00 3.51
6785 7565 1.375523 CCGAAAACCCTCCCAGTCG 60.376 63.158 0.00 0.00 0.00 4.18
6786 7566 2.033194 CGAAAACCCTCCCAGTCGC 61.033 63.158 0.00 0.00 0.00 5.19
6787 7567 2.032071 AAAACCCTCCCAGTCGCG 59.968 61.111 0.00 0.00 0.00 5.87
6788 7568 4.699522 AAACCCTCCCAGTCGCGC 62.700 66.667 0.00 0.00 0.00 6.86
6796 7576 4.069232 CCAGTCGCGCCCTCAAGA 62.069 66.667 0.00 0.00 0.00 3.02
6797 7577 2.185350 CAGTCGCGCCCTCAAGAT 59.815 61.111 0.00 0.00 0.00 2.40
6798 7578 2.169789 CAGTCGCGCCCTCAAGATG 61.170 63.158 0.00 0.00 0.00 2.90
6799 7579 3.567797 GTCGCGCCCTCAAGATGC 61.568 66.667 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.412343 AGCAAACCAAAGATGCCGTTT 59.588 42.857 0.00 0.00 40.93 3.60
43 44 2.262572 GTAGCAAACCAAAGATGCCG 57.737 50.000 0.00 0.00 40.93 5.69
78 79 5.279056 CGGCCCAACAAATAAGGTCTAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
84 85 1.201414 CACGGCCCAACAAATAAGGTC 59.799 52.381 0.00 0.00 0.00 3.85
90 91 1.582610 CGTAGCACGGCCCAACAAAT 61.583 55.000 0.00 0.00 38.08 2.32
114 116 2.971660 TTTGAATAGATCCGTCGGCA 57.028 45.000 6.34 0.00 0.00 5.69
127 129 4.441634 CGTAGACCGGGAGATCTTTTGAAT 60.442 45.833 6.32 0.00 32.48 2.57
139 141 0.465097 GGATGACTCGTAGACCGGGA 60.465 60.000 6.32 0.00 40.44 5.14
140 142 0.750546 TGGATGACTCGTAGACCGGG 60.751 60.000 6.32 0.00 44.85 5.73
173 175 3.195698 GATGGCGCTTGACCGGAC 61.196 66.667 9.46 1.07 0.00 4.79
186 188 6.785191 ACTTATATTGCAAAAGTGACGATGG 58.215 36.000 12.97 0.00 32.38 3.51
242 244 8.803201 TTCGTTACAAATATTGTTGCAATGAA 57.197 26.923 0.59 0.00 42.22 2.57
295 299 0.823460 ATATTTGCAACAAGGGGGCG 59.177 50.000 0.00 0.00 0.00 6.13
297 301 3.979101 ACAATATTTGCAACAAGGGGG 57.021 42.857 0.00 0.00 0.00 5.40
338 342 1.812571 GATGCGGTGACTTTCCACAAT 59.187 47.619 0.00 0.00 38.74 2.71
369 373 2.685017 TGCTCGAGGCCATGACCT 60.685 61.111 15.58 0.00 45.04 3.85
412 416 0.251341 GCCTCCAACACCATCACCTT 60.251 55.000 0.00 0.00 0.00 3.50
415 419 0.392998 ATCGCCTCCAACACCATCAC 60.393 55.000 0.00 0.00 0.00 3.06
418 422 1.750399 GCATCGCCTCCAACACCAT 60.750 57.895 0.00 0.00 0.00 3.55
447 452 2.545952 CGCCGTCCAACTATAATGCTCT 60.546 50.000 0.00 0.00 0.00 4.09
454 459 1.265095 GATCGTCGCCGTCCAACTATA 59.735 52.381 0.00 0.00 35.01 1.31
472 477 2.583319 CGAGTGCGCACATCGGAT 60.583 61.111 39.21 20.20 41.52 4.18
523 540 2.107141 CGCATCTTCCCGTCTCCC 59.893 66.667 0.00 0.00 0.00 4.30
591 610 2.731691 AAGCCGACGCCTTCATGTGT 62.732 55.000 0.00 0.00 34.57 3.72
605 624 4.821589 GAGCTCCCCGTGAAGCCG 62.822 72.222 0.87 0.00 0.00 5.52
625 644 2.032681 GTTGCCTCCCGTGCTCTT 59.967 61.111 0.00 0.00 0.00 2.85
646 665 2.246719 GGATCCAAATCCTCTCGTGG 57.753 55.000 6.95 0.00 46.97 4.94
659 678 5.951148 TGATGTTTTGCTAAATCTGGATCCA 59.049 36.000 15.27 15.27 0.00 3.41
660 679 6.096001 AGTGATGTTTTGCTAAATCTGGATCC 59.904 38.462 4.20 4.20 0.00 3.36
671 690 3.676172 CCGTAACGAGTGATGTTTTGCTA 59.324 43.478 0.00 0.00 0.00 3.49
677 696 2.409975 CCAACCGTAACGAGTGATGTT 58.590 47.619 0.00 0.00 0.00 2.71
711 730 4.645535 TGAATAGACTTTGCAACTGAGCT 58.354 39.130 0.00 0.00 34.99 4.09
712 731 5.362556 TTGAATAGACTTTGCAACTGAGC 57.637 39.130 0.00 0.00 0.00 4.26
733 752 5.563842 CGTTCGAGAGTAACGTATTACCTT 58.436 41.667 0.00 0.00 43.52 3.50
750 769 7.694388 ATCGAATTTTAATCAGATCGTTCGA 57.306 32.000 14.90 14.90 46.46 3.71
775 794 2.433491 CCGTGGCCGTCGAATCAA 60.433 61.111 19.30 0.00 0.00 2.57
799 818 1.201825 GATAACGATGCGCGCTTCC 59.798 57.895 32.96 20.83 46.04 3.46
803 822 1.199370 GACTGATAACGATGCGCGC 59.801 57.895 27.26 27.26 46.04 6.86
804 823 3.170552 ATCTGACTGATAACGATGCGCG 61.171 50.000 0.00 0.00 38.79 6.86
805 824 1.840181 TCTGACTGATAACGATGCGC 58.160 50.000 0.00 0.00 0.00 6.09
806 825 3.632189 TCATCTGACTGATAACGATGCG 58.368 45.455 0.00 0.00 33.36 4.73
807 826 6.201615 TCAAATCATCTGACTGATAACGATGC 59.798 38.462 0.00 0.00 34.79 3.91
808 827 7.704789 TCAAATCATCTGACTGATAACGATG 57.295 36.000 0.00 0.00 34.79 3.84
809 828 8.899427 ATTCAAATCATCTGACTGATAACGAT 57.101 30.769 0.00 0.00 34.79 3.73
898 918 5.757850 ATTATGTTCGAGGGAAGCAAATC 57.242 39.130 0.00 0.00 31.49 2.17
938 960 0.683504 ATCTGGCGAGTAGAACCGGT 60.684 55.000 0.00 0.00 0.00 5.28
1155 1185 0.897863 TTCCACCTCCGCCATTTTGG 60.898 55.000 0.00 0.00 41.55 3.28
1156 1186 0.527565 CTTCCACCTCCGCCATTTTG 59.472 55.000 0.00 0.00 0.00 2.44
1164 1194 1.213013 CTGACGTCTTCCACCTCCG 59.787 63.158 17.92 0.00 0.00 4.63
1174 1204 0.036952 CCATCCTGTTGCTGACGTCT 60.037 55.000 17.92 0.00 0.00 4.18
1261 1291 2.997897 GAGTGGAGGTGGGACGCT 60.998 66.667 0.00 0.00 39.78 5.07
1343 1382 4.436998 GTGTGAGGAGGGGTCGCG 62.437 72.222 0.00 0.00 0.00 5.87
1344 1383 4.436998 CGTGTGAGGAGGGGTCGC 62.437 72.222 0.00 0.00 0.00 5.19
1345 1384 2.005960 GATCGTGTGAGGAGGGGTCG 62.006 65.000 0.00 0.00 0.00 4.79
1346 1385 1.817209 GATCGTGTGAGGAGGGGTC 59.183 63.158 0.00 0.00 0.00 4.46
1347 1386 2.052690 CGATCGTGTGAGGAGGGGT 61.053 63.158 7.03 0.00 0.00 4.95
1348 1387 2.786495 CCGATCGTGTGAGGAGGGG 61.786 68.421 15.09 0.00 0.00 4.79
1349 1388 1.605058 AACCGATCGTGTGAGGAGGG 61.605 60.000 15.09 0.00 0.00 4.30
1360 1400 1.154035 GCCCAAGCAAAACCGATCG 60.154 57.895 8.51 8.51 39.53 3.69
1516 1556 1.075600 GAGAGAGAGGGGAGTGGGG 60.076 68.421 0.00 0.00 0.00 4.96
1520 1560 1.409101 GCGTAAGAGAGAGAGGGGAGT 60.409 57.143 0.00 0.00 43.02 3.85
1529 1571 2.423892 GTCAGATGTGGCGTAAGAGAGA 59.576 50.000 0.00 0.00 43.02 3.10
1701 1749 1.000233 CACAGGTAACGTGACGACCG 61.000 60.000 13.70 8.82 41.53 4.79
1875 1923 3.521126 CAGACTGCCCCTGCCTATATAAT 59.479 47.826 0.00 0.00 36.33 1.28
2367 2564 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
2435 2633 4.277258 CATGCAAAAATGCTAGCTACTCG 58.723 43.478 17.23 1.37 35.49 4.18
2473 2671 1.197721 GGCAAACAGTGTCTGATTCGG 59.802 52.381 0.00 0.00 35.18 4.30
2595 2797 9.285770 GTAAATCAAATTATTTCCAGTCGAACC 57.714 33.333 0.00 0.00 31.63 3.62
3120 3325 4.316722 CGACGAGATATGCTTCTTTGAACG 60.317 45.833 0.00 0.00 0.00 3.95
3276 3481 2.164219 CCAGGCTGCAAATGTATTTCGT 59.836 45.455 9.56 0.00 0.00 3.85
3316 3521 5.175673 GGCACAAAAATCAGCTAAACAGAAC 59.824 40.000 0.00 0.00 0.00 3.01
3319 3524 4.619973 TGGCACAAAAATCAGCTAAACAG 58.380 39.130 0.00 0.00 31.92 3.16
3452 3657 8.918202 TTTGACAGATTACAGAACAAAGGTAT 57.082 30.769 0.00 0.00 0.00 2.73
3459 3664 7.042321 CCGTAAGTTTTGACAGATTACAGAACA 60.042 37.037 0.00 0.00 34.87 3.18
3494 3699 4.999311 GCCAAGCCTGAATCAAAGAAAAAT 59.001 37.500 0.00 0.00 0.00 1.82
3624 3861 9.487442 TCAAAAGCCTACAAAGGGAAATATAAT 57.513 29.630 0.00 0.00 43.87 1.28
3820 4057 5.982516 TGTCAACCACAATTTTTGTAGATGC 59.017 36.000 0.00 0.00 43.23 3.91
4116 4689 8.784043 GCGGTTGTAGGAAAAGATATCAATATT 58.216 33.333 5.32 0.00 0.00 1.28
4117 4690 7.936847 TGCGGTTGTAGGAAAAGATATCAATAT 59.063 33.333 5.32 0.00 0.00 1.28
4118 4691 7.276658 TGCGGTTGTAGGAAAAGATATCAATA 58.723 34.615 5.32 0.00 0.00 1.90
4119 4692 6.119536 TGCGGTTGTAGGAAAAGATATCAAT 58.880 36.000 5.32 0.00 0.00 2.57
4120 4693 5.492895 TGCGGTTGTAGGAAAAGATATCAA 58.507 37.500 5.32 0.00 0.00 2.57
4121 4694 5.092554 TGCGGTTGTAGGAAAAGATATCA 57.907 39.130 5.32 0.00 0.00 2.15
4122 4695 5.116882 ACTGCGGTTGTAGGAAAAGATATC 58.883 41.667 0.00 0.00 31.21 1.63
4123 4696 5.099042 ACTGCGGTTGTAGGAAAAGATAT 57.901 39.130 0.00 0.00 31.21 1.63
4124 4697 4.020928 TGACTGCGGTTGTAGGAAAAGATA 60.021 41.667 0.00 0.00 31.21 1.98
4125 4698 3.244422 TGACTGCGGTTGTAGGAAAAGAT 60.244 43.478 0.00 0.00 31.21 2.40
4126 4699 2.103432 TGACTGCGGTTGTAGGAAAAGA 59.897 45.455 0.00 0.00 31.21 2.52
4127 4700 2.489971 TGACTGCGGTTGTAGGAAAAG 58.510 47.619 0.00 0.00 31.21 2.27
4128 4701 2.623878 TGACTGCGGTTGTAGGAAAA 57.376 45.000 0.00 0.00 31.21 2.29
4129 4702 2.614983 GTTTGACTGCGGTTGTAGGAAA 59.385 45.455 0.00 0.00 31.21 3.13
4130 4703 2.158871 AGTTTGACTGCGGTTGTAGGAA 60.159 45.455 0.00 0.00 31.21 3.36
4131 4704 1.414919 AGTTTGACTGCGGTTGTAGGA 59.585 47.619 0.00 0.00 31.21 2.94
4132 4705 1.878953 AGTTTGACTGCGGTTGTAGG 58.121 50.000 0.00 0.00 31.21 3.18
4133 4706 3.963383 AAAGTTTGACTGCGGTTGTAG 57.037 42.857 0.00 0.00 0.00 2.74
4134 4707 4.444536 AGTAAAGTTTGACTGCGGTTGTA 58.555 39.130 0.00 0.00 0.00 2.41
4135 4708 3.275999 AGTAAAGTTTGACTGCGGTTGT 58.724 40.909 0.00 0.00 0.00 3.32
4136 4709 3.963383 AGTAAAGTTTGACTGCGGTTG 57.037 42.857 0.00 0.00 0.00 3.77
4137 4710 3.492011 CGTAGTAAAGTTTGACTGCGGTT 59.508 43.478 18.54 0.00 44.74 4.44
4138 4711 3.054878 CGTAGTAAAGTTTGACTGCGGT 58.945 45.455 18.54 0.00 44.74 5.68
4139 4712 3.700130 CGTAGTAAAGTTTGACTGCGG 57.300 47.619 18.54 0.00 44.74 5.69
4141 4714 6.847792 GGTTAAACGTAGTAAAGTTTGACTGC 59.152 38.462 18.28 1.64 45.00 4.40
4142 4715 8.134905 AGGTTAAACGTAGTAAAGTTTGACTG 57.865 34.615 18.28 0.00 45.00 3.51
4143 4716 9.816354 TTAGGTTAAACGTAGTAAAGTTTGACT 57.184 29.630 18.28 13.35 45.00 3.41
4147 4720 9.816354 TGTCTTAGGTTAAACGTAGTAAAGTTT 57.184 29.630 9.18 9.18 45.00 2.66
4148 4721 9.816354 TTGTCTTAGGTTAAACGTAGTAAAGTT 57.184 29.630 0.00 0.00 45.00 2.66
4149 4722 9.816354 TTTGTCTTAGGTTAAACGTAGTAAAGT 57.184 29.630 0.00 0.00 45.00 2.66
4163 4736 8.827677 GTTCGCATATAAGATTTGTCTTAGGTT 58.172 33.333 4.47 0.00 35.89 3.50
4164 4737 8.204836 AGTTCGCATATAAGATTTGTCTTAGGT 58.795 33.333 4.47 0.00 35.89 3.08
4165 4738 8.594881 AGTTCGCATATAAGATTTGTCTTAGG 57.405 34.615 4.47 0.00 35.89 2.69
4175 4748 9.916397 CGTTTCTTTTTAGTTCGCATATAAGAT 57.084 29.630 0.00 0.00 0.00 2.40
4176 4749 8.385111 CCGTTTCTTTTTAGTTCGCATATAAGA 58.615 33.333 0.00 0.00 0.00 2.10
4177 4750 8.385111 TCCGTTTCTTTTTAGTTCGCATATAAG 58.615 33.333 0.00 0.00 0.00 1.73
4206 4779 4.899502 ACAGAGAAAACCTCCATGTACTG 58.100 43.478 0.00 0.00 42.97 2.74
4207 4780 5.568620 AACAGAGAAAACCTCCATGTACT 57.431 39.130 0.00 0.00 42.97 2.73
4239 4812 4.556233 TCCTAGACATCACAAAAGACACG 58.444 43.478 0.00 0.00 0.00 4.49
4277 4851 7.456269 TCAAGGGACCCACAAACATATATTTTT 59.544 33.333 14.60 0.00 0.00 1.94
4282 4856 4.538490 ACTCAAGGGACCCACAAACATATA 59.462 41.667 14.60 0.00 0.00 0.86
4285 4859 1.499007 ACTCAAGGGACCCACAAACAT 59.501 47.619 14.60 0.00 0.00 2.71
4286 4860 0.923358 ACTCAAGGGACCCACAAACA 59.077 50.000 14.60 0.00 0.00 2.83
4287 4861 2.943036 TACTCAAGGGACCCACAAAC 57.057 50.000 14.60 0.00 0.00 2.93
4504 5078 1.129998 CTTGCTCTGCCTTCAATGACG 59.870 52.381 0.00 0.00 0.00 4.35
4848 5454 0.887836 GCTTTTTCGGACGGAGGGTT 60.888 55.000 0.00 0.00 0.00 4.11
4849 5455 1.302271 GCTTTTTCGGACGGAGGGT 60.302 57.895 0.00 0.00 0.00 4.34
4850 5456 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
4851 5457 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
4852 5458 0.110192 GCAAGCTTTTTCGGACGGAG 60.110 55.000 0.00 0.00 0.00 4.63
4853 5459 1.512156 GGCAAGCTTTTTCGGACGGA 61.512 55.000 0.00 0.00 0.00 4.69
4854 5460 1.081442 GGCAAGCTTTTTCGGACGG 60.081 57.895 0.00 0.00 0.00 4.79
4855 5461 1.081442 GGGCAAGCTTTTTCGGACG 60.081 57.895 0.00 0.00 0.00 4.79
4856 5462 1.179174 AGGGGCAAGCTTTTTCGGAC 61.179 55.000 0.00 0.00 0.00 4.79
4857 5463 0.893727 GAGGGGCAAGCTTTTTCGGA 60.894 55.000 0.00 0.00 0.00 4.55
4858 5464 1.178534 TGAGGGGCAAGCTTTTTCGG 61.179 55.000 0.00 0.00 0.00 4.30
4859 5465 0.673437 TTGAGGGGCAAGCTTTTTCG 59.327 50.000 0.00 0.00 31.55 3.46
4860 5466 2.908688 TTTGAGGGGCAAGCTTTTTC 57.091 45.000 0.00 0.00 37.87 2.29
4861 5467 2.224597 CCATTTGAGGGGCAAGCTTTTT 60.225 45.455 0.00 0.00 37.87 1.94
4862 5468 1.348696 CCATTTGAGGGGCAAGCTTTT 59.651 47.619 0.00 0.00 37.87 2.27
4863 5469 0.978907 CCATTTGAGGGGCAAGCTTT 59.021 50.000 0.00 0.00 37.87 3.51
4864 5470 0.114954 TCCATTTGAGGGGCAAGCTT 59.885 50.000 0.00 0.00 37.87 3.74
4865 5471 0.337428 ATCCATTTGAGGGGCAAGCT 59.663 50.000 0.00 0.00 37.87 3.74
4866 5472 0.462789 CATCCATTTGAGGGGCAAGC 59.537 55.000 0.00 0.00 37.87 4.01
4867 5473 1.856629 ACATCCATTTGAGGGGCAAG 58.143 50.000 0.00 0.00 37.87 4.01
4868 5474 2.622977 GGTACATCCATTTGAGGGGCAA 60.623 50.000 0.00 0.00 35.97 4.52
4869 5475 1.064017 GGTACATCCATTTGAGGGGCA 60.064 52.381 0.00 0.00 35.97 5.36
4870 5476 1.215423 AGGTACATCCATTTGAGGGGC 59.785 52.381 0.00 0.00 39.02 5.80
4871 5477 3.669939 AAGGTACATCCATTTGAGGGG 57.330 47.619 0.00 0.00 39.02 4.79
4872 5478 4.137543 GCTAAGGTACATCCATTTGAGGG 58.862 47.826 0.00 0.00 39.02 4.30
4873 5479 4.780815 TGCTAAGGTACATCCATTTGAGG 58.219 43.478 0.00 0.00 39.02 3.86
4874 5480 6.949352 ATTGCTAAGGTACATCCATTTGAG 57.051 37.500 0.00 0.00 39.02 3.02
4875 5481 7.395772 TCAAATTGCTAAGGTACATCCATTTGA 59.604 33.333 0.00 0.00 38.06 2.69
4876 5482 7.546358 TCAAATTGCTAAGGTACATCCATTTG 58.454 34.615 0.00 0.00 39.02 2.32
4877 5483 7.147846 CCTCAAATTGCTAAGGTACATCCATTT 60.148 37.037 0.00 0.00 39.02 2.32
4878 5484 6.322201 CCTCAAATTGCTAAGGTACATCCATT 59.678 38.462 0.00 0.00 39.02 3.16
4879 5485 5.829924 CCTCAAATTGCTAAGGTACATCCAT 59.170 40.000 0.00 0.00 39.02 3.41
4880 5486 5.192927 CCTCAAATTGCTAAGGTACATCCA 58.807 41.667 0.00 0.00 39.02 3.41
4881 5487 4.580580 CCCTCAAATTGCTAAGGTACATCC 59.419 45.833 0.00 0.00 0.00 3.51
4882 5488 5.297029 GTCCCTCAAATTGCTAAGGTACATC 59.703 44.000 0.00 0.00 0.00 3.06
4883 5489 5.193679 GTCCCTCAAATTGCTAAGGTACAT 58.806 41.667 0.00 0.00 0.00 2.29
4884 5490 4.042311 TGTCCCTCAAATTGCTAAGGTACA 59.958 41.667 0.00 0.00 0.00 2.90
4885 5491 4.585879 TGTCCCTCAAATTGCTAAGGTAC 58.414 43.478 0.00 0.00 0.00 3.34
4886 5492 4.919774 TGTCCCTCAAATTGCTAAGGTA 57.080 40.909 0.00 0.00 0.00 3.08
4887 5493 3.806949 TGTCCCTCAAATTGCTAAGGT 57.193 42.857 0.00 0.00 0.00 3.50
4888 5494 3.119352 GCTTGTCCCTCAAATTGCTAAGG 60.119 47.826 0.00 0.00 35.48 2.69
4889 5495 3.760684 AGCTTGTCCCTCAAATTGCTAAG 59.239 43.478 0.00 0.00 34.71 2.18
4890 5496 3.766545 AGCTTGTCCCTCAAATTGCTAA 58.233 40.909 0.00 0.00 34.71 3.09
4891 5497 3.439857 AGCTTGTCCCTCAAATTGCTA 57.560 42.857 0.00 0.00 34.71 3.49
4892 5498 2.299326 AGCTTGTCCCTCAAATTGCT 57.701 45.000 0.00 0.00 35.48 3.91
4893 5499 3.391506 AAAGCTTGTCCCTCAAATTGC 57.608 42.857 0.00 0.00 35.48 3.56
4894 5500 4.445385 CGAAAAAGCTTGTCCCTCAAATTG 59.555 41.667 0.00 0.00 35.48 2.32
4895 5501 4.501400 CCGAAAAAGCTTGTCCCTCAAATT 60.501 41.667 0.00 0.00 35.48 1.82
4896 5502 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
4897 5503 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
4898 5504 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
4899 5505 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
4900 5506 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
4901 5507 1.133915 TGTCCGAAAAAGCTTGTCCCT 60.134 47.619 0.00 0.00 0.00 4.20
4911 5517 3.236896 ACTACTCCCTCTGTCCGAAAAA 58.763 45.455 0.00 0.00 0.00 1.94
4921 5527 6.497259 TGACAGAATAACAAACTACTCCCTCT 59.503 38.462 0.00 0.00 0.00 3.69
4987 5594 8.473219 GGAGATTTTGCTAATTCCTCTCAATTT 58.527 33.333 0.00 0.00 31.47 1.82
4997 5604 6.924111 TCACCAAAGGAGATTTTGCTAATTC 58.076 36.000 0.00 0.00 36.86 2.17
5016 5623 7.227873 TCAATTAATTAGTGTGTCCTTCACCA 58.772 34.615 0.00 0.00 45.61 4.17
5025 5632 9.920946 ACCCATTATCTCAATTAATTAGTGTGT 57.079 29.630 0.00 0.00 0.00 3.72
5065 5672 5.869649 TGCATAAACTACAGCCTCATCTA 57.130 39.130 0.00 0.00 0.00 1.98
5075 5682 5.141182 TGGACCCTTTTTGCATAAACTACA 58.859 37.500 0.00 0.00 0.00 2.74
5132 5742 4.941263 CCATTTCTCCGACAAGTATTTCCA 59.059 41.667 0.00 0.00 0.00 3.53
5184 5794 8.746052 AAATATTTGTCGGAGAAATGGATGTA 57.254 30.769 19.84 2.88 39.69 2.29
5214 5824 4.886496 ACCTAACAAGTACTCCCTTCAC 57.114 45.455 0.00 0.00 0.00 3.18
5237 5847 4.041198 CCAGGGAAACTGTCTAGTGGTTTA 59.959 45.833 9.21 0.00 46.06 2.01
5440 6050 3.761218 TCATTTTCATTTCCGCTAAGCCA 59.239 39.130 0.00 0.00 0.00 4.75
5449 6059 5.526111 CCATTGCTCCATCATTTTCATTTCC 59.474 40.000 0.00 0.00 0.00 3.13
5482 6092 3.626670 CCTCTTGAATCATCTTGGCAGTC 59.373 47.826 0.00 0.00 0.00 3.51
5532 6142 0.739813 GTCGTCCTGCGCCAAACTAT 60.740 55.000 4.18 0.00 41.07 2.12
5667 6277 3.557595 GCTACATGTGGTATCTTCAGCAC 59.442 47.826 9.11 0.00 45.10 4.40
5726 6338 1.166531 ACTCTTGCAAACGTGAGGGC 61.167 55.000 15.48 0.00 0.00 5.19
5768 6380 1.002576 TGCACTCGCACAACATTTCTG 60.003 47.619 0.00 0.00 45.36 3.02
6223 6835 6.302269 AGAGATATGGATGGCACCTAAAAAG 58.698 40.000 0.00 0.00 0.00 2.27
6228 6840 6.263754 TCAATAGAGATATGGATGGCACCTA 58.736 40.000 0.00 0.00 0.00 3.08
6261 6873 7.012989 TCAGAATTAGTTGATTCATGATGGCAG 59.987 37.037 0.00 0.00 38.27 4.85
6264 6876 9.286170 AGATCAGAATTAGTTGATTCATGATGG 57.714 33.333 0.00 0.00 38.27 3.51
6299 7075 7.345653 ACAACTTCAGAGGATATAGATTGGTGA 59.654 37.037 0.00 0.00 0.00 4.02
6335 7111 0.753262 GGCAAGGAGGAGCGATAAGA 59.247 55.000 0.00 0.00 0.00 2.10
6341 7117 1.078214 TTGATGGCAAGGAGGAGCG 60.078 57.895 0.00 0.00 0.00 5.03
6371 7147 2.225382 TAGGAAGACCGACATGACCA 57.775 50.000 0.00 0.00 41.83 4.02
6518 7298 4.511246 CACCCGGATGGCTGGCAT 62.511 66.667 17.28 17.28 39.39 4.40
6565 7345 8.579850 TTTTTAGCAACACTTCCATCATAGAT 57.420 30.769 0.00 0.00 0.00 1.98
6599 7379 8.551440 CCCCTATGATTGATAACTTCCATCATA 58.449 37.037 8.31 8.31 42.47 2.15
6600 7380 7.240405 TCCCCTATGATTGATAACTTCCATCAT 59.760 37.037 7.17 7.17 44.88 2.45
6601 7381 6.562223 TCCCCTATGATTGATAACTTCCATCA 59.438 38.462 0.00 0.00 39.90 3.07
6605 7385 5.249420 GCTCCCCTATGATTGATAACTTCC 58.751 45.833 0.00 0.00 0.00 3.46
6606 7386 4.932200 CGCTCCCCTATGATTGATAACTTC 59.068 45.833 0.00 0.00 0.00 3.01
6615 7395 4.103153 TCTTTCATTCGCTCCCCTATGATT 59.897 41.667 0.00 0.00 0.00 2.57
6628 7408 9.999883 GAAGAAAATGTCAAAATCTTTCATTCG 57.000 29.630 0.00 0.00 30.89 3.34
6692 7472 7.014230 GGAGATGCTCTACTCTGAAGTTATTCT 59.986 40.741 0.00 0.00 36.92 2.40
6711 7491 1.068250 GGGACGTAGCTGGAGATGC 59.932 63.158 0.00 0.00 0.00 3.91
6712 7492 1.043116 TGGGGACGTAGCTGGAGATG 61.043 60.000 0.00 0.00 0.00 2.90
6713 7493 0.325296 TTGGGGACGTAGCTGGAGAT 60.325 55.000 0.00 0.00 0.00 2.75
6714 7494 1.077805 TTGGGGACGTAGCTGGAGA 59.922 57.895 0.00 0.00 0.00 3.71
6715 7495 1.218316 GTTGGGGACGTAGCTGGAG 59.782 63.158 0.00 0.00 0.00 3.86
6716 7496 1.534476 TGTTGGGGACGTAGCTGGA 60.534 57.895 0.00 0.00 0.00 3.86
6717 7497 1.079127 CTGTTGGGGACGTAGCTGG 60.079 63.158 0.00 0.00 0.00 4.85
6718 7498 1.079127 CCTGTTGGGGACGTAGCTG 60.079 63.158 0.00 0.00 0.00 4.24
6719 7499 2.955881 GCCTGTTGGGGACGTAGCT 61.956 63.158 0.00 0.00 35.12 3.32
6720 7500 2.436115 GCCTGTTGGGGACGTAGC 60.436 66.667 0.00 0.00 35.12 3.58
6721 7501 2.267961 GGCCTGTTGGGGACGTAG 59.732 66.667 0.00 0.00 35.12 3.51
6722 7502 3.324108 GGGCCTGTTGGGGACGTA 61.324 66.667 0.84 0.00 34.56 3.57
6724 7504 4.410400 GAGGGCCTGTTGGGGACG 62.410 72.222 12.95 0.00 34.56 4.79
6725 7505 4.048470 GGAGGGCCTGTTGGGGAC 62.048 72.222 12.95 0.00 35.12 4.46
6726 7506 4.608514 TGGAGGGCCTGTTGGGGA 62.609 66.667 12.95 0.00 35.12 4.81
6727 7507 3.589542 TTGGAGGGCCTGTTGGGG 61.590 66.667 12.95 0.00 35.12 4.96
6728 7508 2.036256 CTTGGAGGGCCTGTTGGG 59.964 66.667 12.95 0.00 38.36 4.12
6729 7509 2.036256 CCTTGGAGGGCCTGTTGG 59.964 66.667 12.95 3.64 34.31 3.77
6730 7510 2.677875 GCCTTGGAGGGCCTGTTG 60.678 66.667 12.95 0.00 45.92 3.33
6737 7517 3.036431 AAAAAGTCGCCTTGGAGGG 57.964 52.632 0.00 0.00 35.37 4.30
6765 7545 2.746277 CTGGGAGGGTTTTCGGCG 60.746 66.667 0.00 0.00 0.00 6.46
6766 7546 1.674651 GACTGGGAGGGTTTTCGGC 60.675 63.158 0.00 0.00 0.00 5.54
6767 7547 1.375523 CGACTGGGAGGGTTTTCGG 60.376 63.158 0.00 0.00 0.00 4.30
6768 7548 2.033194 GCGACTGGGAGGGTTTTCG 61.033 63.158 0.00 0.00 0.00 3.46
6769 7549 2.033194 CGCGACTGGGAGGGTTTTC 61.033 63.158 0.00 0.00 0.00 2.29
6770 7550 2.032071 CGCGACTGGGAGGGTTTT 59.968 61.111 0.00 0.00 0.00 2.43
6771 7551 4.699522 GCGCGACTGGGAGGGTTT 62.700 66.667 12.10 0.00 0.00 3.27
6779 7559 3.376935 ATCTTGAGGGCGCGACTGG 62.377 63.158 13.91 0.00 0.00 4.00
6780 7560 2.169789 CATCTTGAGGGCGCGACTG 61.170 63.158 13.91 0.00 0.00 3.51
6781 7561 2.185350 CATCTTGAGGGCGCGACT 59.815 61.111 13.91 7.89 0.00 4.18
6782 7562 3.567797 GCATCTTGAGGGCGCGAC 61.568 66.667 12.10 6.99 0.00 5.19



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.