Multiple sequence alignment - TraesCS5A01G135200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G135200 chr5A 100.000 4484 0 0 1 4484 305277413 305281896 0.000000e+00 8281
1 TraesCS5A01G135200 chr5B 92.948 3531 213 14 1 3524 250950868 250954369 0.000000e+00 5108
2 TraesCS5A01G135200 chr5B 90.860 930 70 6 3558 4484 250954359 250955276 0.000000e+00 1232
3 TraesCS5A01G135200 chr5D 95.292 2846 125 6 665 3505 227544149 227546990 0.000000e+00 4505
4 TraesCS5A01G135200 chr5D 92.374 931 56 4 3556 4484 227546985 227547902 0.000000e+00 1312
5 TraesCS5A01G135200 chr5D 89.583 528 52 3 1 526 227543623 227544149 0.000000e+00 667
6 TraesCS5A01G135200 chr2D 87.679 2938 320 32 579 3492 31895731 31898650 0.000000e+00 3382
7 TraesCS5A01G135200 chr2D 84.884 258 27 7 3556 3805 31898650 31898903 2.680000e-62 250
8 TraesCS5A01G135200 chr2A 87.108 2932 340 30 583 3492 33951632 33954547 0.000000e+00 3286
9 TraesCS5A01G135200 chr2A 87.150 1930 227 17 579 2495 33785846 33787767 0.000000e+00 2170
10 TraesCS5A01G135200 chr2A 87.488 1015 105 15 2489 3489 33790456 33791462 0.000000e+00 1151
11 TraesCS5A01G135200 chr2A 83.203 256 27 10 3556 3805 33791465 33791710 2.100000e-53 220
12 TraesCS5A01G135200 chr2A 81.961 255 32 9 3556 3805 33954547 33954792 2.110000e-48 204
13 TraesCS5A01G135200 chr6D 81.034 2958 466 61 609 3492 441714579 441711643 0.000000e+00 2266
14 TraesCS5A01G135200 chr6D 90.749 454 39 3 98 549 149747846 149747394 1.780000e-168 603
15 TraesCS5A01G135200 chr6D 85.688 552 71 7 1 548 441710257 441710804 3.890000e-160 575
16 TraesCS5A01G135200 chr6A 80.547 2961 476 62 609 3492 590896608 590893671 0.000000e+00 2185
17 TraesCS5A01G135200 chr6B 80.466 2964 476 70 609 3492 667248759 667245819 0.000000e+00 2170
18 TraesCS5A01G135200 chr2B 86.989 1883 209 27 1646 3511 52511921 52510058 0.000000e+00 2087
19 TraesCS5A01G135200 chr2B 87.197 1031 120 11 579 1600 52222772 52223799 0.000000e+00 1162
20 TraesCS5A01G135200 chr2B 86.301 1022 111 14 579 1592 52512927 52511927 0.000000e+00 1085
21 TraesCS5A01G135200 chr2B 86.166 253 29 4 3556 3805 52225629 52225878 7.390000e-68 268
22 TraesCS5A01G135200 chr2B 81.413 269 22 18 3562 3805 52510067 52509802 1.270000e-45 195
23 TraesCS5A01G135200 chr3D 89.922 516 43 9 40 549 119008710 119009222 0.000000e+00 656
24 TraesCS5A01G135200 chr4D 87.226 548 65 5 4 548 104458316 104458861 1.770000e-173 619
25 TraesCS5A01G135200 chr4D 85.688 552 72 7 1 548 322186740 322187288 3.890000e-160 575
26 TraesCS5A01G135200 chr1A 87.209 516 55 11 40 548 165131960 165132471 1.080000e-160 577
27 TraesCS5A01G135200 chr1D 85.326 552 73 8 3 548 150091823 150091274 8.420000e-157 564


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G135200 chr5A 305277413 305281896 4483 False 8281.000000 8281 100.000000 1 4484 1 chr5A.!!$F1 4483
1 TraesCS5A01G135200 chr5B 250950868 250955276 4408 False 3170.000000 5108 91.904000 1 4484 2 chr5B.!!$F1 4483
2 TraesCS5A01G135200 chr5D 227543623 227547902 4279 False 2161.333333 4505 92.416333 1 4484 3 chr5D.!!$F1 4483
3 TraesCS5A01G135200 chr2D 31895731 31898903 3172 False 1816.000000 3382 86.281500 579 3805 2 chr2D.!!$F1 3226
4 TraesCS5A01G135200 chr2A 33951632 33954792 3160 False 1745.000000 3286 84.534500 583 3805 2 chr2A.!!$F2 3222
5 TraesCS5A01G135200 chr2A 33785846 33791710 5864 False 1180.333333 2170 85.947000 579 3805 3 chr2A.!!$F1 3226
6 TraesCS5A01G135200 chr6D 441711643 441714579 2936 True 2266.000000 2266 81.034000 609 3492 1 chr6D.!!$R2 2883
7 TraesCS5A01G135200 chr6D 441710257 441710804 547 False 575.000000 575 85.688000 1 548 1 chr6D.!!$F1 547
8 TraesCS5A01G135200 chr6A 590893671 590896608 2937 True 2185.000000 2185 80.547000 609 3492 1 chr6A.!!$R1 2883
9 TraesCS5A01G135200 chr6B 667245819 667248759 2940 True 2170.000000 2170 80.466000 609 3492 1 chr6B.!!$R1 2883
10 TraesCS5A01G135200 chr2B 52509802 52512927 3125 True 1122.333333 2087 84.901000 579 3805 3 chr2B.!!$R1 3226
11 TraesCS5A01G135200 chr2B 52222772 52225878 3106 False 715.000000 1162 86.681500 579 3805 2 chr2B.!!$F1 3226
12 TraesCS5A01G135200 chr3D 119008710 119009222 512 False 656.000000 656 89.922000 40 549 1 chr3D.!!$F1 509
13 TraesCS5A01G135200 chr4D 104458316 104458861 545 False 619.000000 619 87.226000 4 548 1 chr4D.!!$F1 544
14 TraesCS5A01G135200 chr4D 322186740 322187288 548 False 575.000000 575 85.688000 1 548 1 chr4D.!!$F2 547
15 TraesCS5A01G135200 chr1A 165131960 165132471 511 False 577.000000 577 87.209000 40 548 1 chr1A.!!$F1 508
16 TraesCS5A01G135200 chr1D 150091274 150091823 549 True 564.000000 564 85.326000 3 548 1 chr1D.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 218 0.335361 TTCGGGCCCTCTCTAAGAGT 59.665 55.000 22.43 0.0 40.72 3.24 F
519 528 0.970427 TGAGAGATAGGCGTGCCACA 60.970 55.000 14.29 0.2 38.92 4.17 F
2012 2064 1.535462 GTCTTGGAAACCACATGTCGG 59.465 52.381 11.40 11.4 30.78 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 2045 1.418264 TCCGACATGTGGTTTCCAAGA 59.582 47.619 1.15 0.0 34.18 3.02 R
2490 2563 1.136305 TCGCCACTGTAGCTTGGATAC 59.864 52.381 6.34 0.0 34.46 2.24 R
3979 6821 0.462047 CGTCCACCATTGGTCTAGGC 60.462 60.000 5.04 0.0 44.35 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.118629 TGAAGATGTACCTGGTGCTGATC 60.119 47.826 15.99 11.05 0.00 2.92
39 40 1.615883 CTGATCCCGTCTCCGATGATT 59.384 52.381 0.00 0.00 35.63 2.57
43 44 1.133575 TCCCGTCTCCGATGATTAGGT 60.134 52.381 0.00 0.00 35.63 3.08
48 49 2.625790 GTCTCCGATGATTAGGTGAGCT 59.374 50.000 0.00 0.00 31.62 4.09
49 50 2.887783 TCTCCGATGATTAGGTGAGCTC 59.112 50.000 6.82 6.82 0.00 4.09
70 72 1.674057 GATCCCTCGGCGATCCAAT 59.326 57.895 11.27 1.66 31.69 3.16
94 96 1.656095 GGAACTCTCGATGAAAGCACG 59.344 52.381 0.00 0.00 0.00 5.34
123 125 1.347707 TGTCAAAACCAGCGGATCTCT 59.652 47.619 1.50 0.00 0.00 3.10
215 218 0.335361 TTCGGGCCCTCTCTAAGAGT 59.665 55.000 22.43 0.00 40.72 3.24
323 327 7.367828 ACCCTAAACTAGTAGGATGGTGATTA 58.632 38.462 12.58 0.00 43.06 1.75
352 358 3.737263 AGCCTCTATGGACTAAACCCTT 58.263 45.455 0.00 0.00 38.35 3.95
356 362 4.473559 CCTCTATGGACTAAACCCTTTGGA 59.526 45.833 0.00 0.00 38.35 3.53
465 473 3.865164 CACCAAGGCACAAAAAGTCTTTC 59.135 43.478 0.00 0.00 0.00 2.62
472 480 3.359654 CACAAAAAGTCTTTCGTTCGGG 58.640 45.455 0.00 0.00 0.00 5.14
512 521 1.294780 GGCCCATGAGAGATAGGCG 59.705 63.158 0.00 0.00 44.82 5.52
513 522 1.476007 GGCCCATGAGAGATAGGCGT 61.476 60.000 0.00 0.00 44.82 5.68
519 528 0.970427 TGAGAGATAGGCGTGCCACA 60.970 55.000 14.29 0.20 38.92 4.17
583 593 7.394816 CACCACCCTTTATAGGAGTAATATGG 58.605 42.308 0.00 0.00 45.05 2.74
585 595 6.504279 CCACCCTTTATAGGAGTAATATGGGT 59.496 42.308 0.00 0.00 45.05 4.51
657 668 7.346751 TGGGCATTAATACTCCAAGATTTTC 57.653 36.000 0.00 0.00 0.00 2.29
983 1013 5.821470 TGGTAGACACATTAACAAACGGAAA 59.179 36.000 0.00 0.00 0.00 3.13
1126 1156 3.057596 TGCGATCCCACTGAATCAAAAAC 60.058 43.478 0.00 0.00 0.00 2.43
1133 1163 7.452880 TCCCACTGAATCAAAAACTCAATAG 57.547 36.000 0.00 0.00 0.00 1.73
1149 1179 6.998802 ACTCAATAGGACTATTCTGGTATGC 58.001 40.000 1.71 0.00 33.79 3.14
1414 1452 9.998106 GGTATGTTATTTGATATAGACAGTGGT 57.002 33.333 0.00 0.00 0.00 4.16
1431 1469 3.118371 AGTGGTAGGTTGGTAGCTAATGC 60.118 47.826 0.00 0.00 36.21 3.56
2012 2064 1.535462 GTCTTGGAAACCACATGTCGG 59.465 52.381 11.40 11.40 30.78 4.79
2162 2228 4.022416 TGACATTTGTGTTACCATTGGAGC 60.022 41.667 10.37 0.00 0.00 4.70
2379 2452 3.181494 GGACGCGGGCTAAAATAAATGTT 60.181 43.478 12.47 0.00 0.00 2.71
2427 2500 8.994429 ATAGTAAGTATCTAAGTGCATCATGC 57.006 34.615 1.35 1.35 45.29 4.06
2911 5714 7.404203 GTCGTCAACCCATAATATAACACAAC 58.596 38.462 0.00 0.00 0.00 3.32
2954 5758 9.528018 GATTGTACACAATATTTTAACATGGGG 57.472 33.333 7.55 0.00 45.72 4.96
2955 5759 7.411486 TGTACACAATATTTTAACATGGGGG 57.589 36.000 0.00 0.00 0.00 5.40
3287 6100 3.571590 TGGGTAGTGGTCATTTTGCTTT 58.428 40.909 0.00 0.00 0.00 3.51
3548 6361 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
3549 6362 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
3550 6363 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3551 6364 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3552 6365 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3553 6366 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3554 6367 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3566 6379 7.955324 GTGTGTGTGTGTGTGTGTATAATTATC 59.045 37.037 0.00 0.00 0.00 1.75
3680 6513 4.588951 AGTTGAGTCATCCAACAGTGTAGA 59.411 41.667 0.00 0.00 44.54 2.59
3706 6539 3.493503 GGTTTGATTTCCTCGGCTATACG 59.506 47.826 0.00 0.00 0.00 3.06
4030 6872 4.410555 GGAGACAGGGTTAAAGGAGATGAT 59.589 45.833 0.00 0.00 0.00 2.45
4055 6897 4.438148 GGGAGATGTAGCTTTGTCTTCTC 58.562 47.826 0.00 3.75 34.11 2.87
4063 6905 3.141398 AGCTTTGTCTTCTCGCAATGAA 58.859 40.909 0.00 0.00 0.00 2.57
4069 6911 3.820467 TGTCTTCTCGCAATGAAATGGTT 59.180 39.130 0.00 0.00 0.00 3.67
4090 6932 5.234116 GGTTGTTAAGGACATGCAAAAACTG 59.766 40.000 0.00 0.00 38.26 3.16
4114 6956 2.222227 AAAGGAAATGAGTGGGGAGC 57.778 50.000 0.00 0.00 0.00 4.70
4160 7002 2.686558 AACACATGTCATCACGTTGC 57.313 45.000 0.00 0.00 0.00 4.17
4161 7003 1.882912 ACACATGTCATCACGTTGCT 58.117 45.000 0.00 0.00 0.00 3.91
4252 7094 5.704978 TGTGCATTCAATTAGCTTGTCTACA 59.295 36.000 0.00 0.00 36.20 2.74
4281 7123 7.010552 GTGAAGTTGTTAGGTATGTAGATGCAG 59.989 40.741 0.00 0.00 0.00 4.41
4326 7168 7.286316 GTGATTAAGTCATCAAGGATGGGAATT 59.714 37.037 6.39 0.00 40.15 2.17
4327 7169 8.501904 TGATTAAGTCATCAAGGATGGGAATTA 58.498 33.333 6.39 0.00 40.15 1.40
4334 7176 5.732331 TCAAGGATGGGAATTAGGTCAAT 57.268 39.130 0.00 0.00 0.00 2.57
4432 7275 1.079127 CTTCTGGCCGTCCGTTGAT 60.079 57.895 0.00 0.00 34.14 2.57
4460 7303 4.361971 TGTCGGGAGCCTCTCGGT 62.362 66.667 15.07 0.00 41.53 4.69
4461 7304 3.069318 GTCGGGAGCCTCTCGGTT 61.069 66.667 15.07 0.00 41.53 4.44
4475 7318 3.272334 GGTTAGCTCCGCGCCATG 61.272 66.667 0.00 0.00 40.39 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.607750 ACGGGATCAGCACCAGGT 60.608 61.111 0.00 0.00 0.00 4.00
39 40 0.847373 AGGGATCGAGAGCTCACCTA 59.153 55.000 17.77 0.00 27.50 3.08
43 44 1.527148 CCGAGGGATCGAGAGCTCA 60.527 63.158 17.77 0.00 34.64 4.26
48 49 1.966972 GATCGCCGAGGGATCGAGA 60.967 63.158 12.68 0.00 40.94 4.04
49 50 2.563942 GATCGCCGAGGGATCGAG 59.436 66.667 12.68 0.00 40.94 4.04
70 72 4.017126 TGCTTTCATCGAGAGTTCCTCTA 58.983 43.478 0.00 0.00 41.35 2.43
83 85 1.732259 ACCGACATTCGTGCTTTCATC 59.268 47.619 0.00 0.00 38.40 2.92
94 96 2.604614 GCTGGTTTTGACACCGACATTC 60.605 50.000 0.00 0.00 40.09 2.67
123 125 1.517538 TAGTTCGGGACCCCCTACCA 61.518 60.000 4.46 0.00 42.67 3.25
194 197 0.335361 TCTTAGAGAGGGCCCGAACT 59.665 55.000 18.44 17.42 0.00 3.01
258 261 6.776116 TCGTGGTAGATCAACTATGTAATCCT 59.224 38.462 0.00 0.00 33.39 3.24
323 327 7.419172 GGTTTAGTCCATAGAGGCTAAGACAAT 60.419 40.741 0.00 0.00 37.33 2.71
352 358 5.482580 ACCCCTGGTGTCTATATAATCCAA 58.517 41.667 0.00 0.00 32.98 3.53
465 473 2.380410 GCTGCACTGTACCCGAACG 61.380 63.158 0.00 0.00 0.00 3.95
472 480 0.535102 ACTGTTGGGCTGCACTGTAC 60.535 55.000 2.50 0.00 0.00 2.90
512 521 1.198759 TAGGGGTCCTCTTGTGGCAC 61.199 60.000 11.55 11.55 34.61 5.01
513 522 0.909610 CTAGGGGTCCTCTTGTGGCA 60.910 60.000 0.00 0.00 34.61 4.92
657 668 4.032104 GCACCACGTCCTAGTTTTATAACG 59.968 45.833 0.00 0.00 39.31 3.18
780 794 5.934781 ACTAATGCCCAAAAACCATTTGAA 58.065 33.333 2.64 0.00 32.07 2.69
1126 1156 6.997655 TGCATACCAGAATAGTCCTATTGAG 58.002 40.000 4.34 0.00 36.02 3.02
1133 1163 7.615403 TGAATCTATGCATACCAGAATAGTCC 58.385 38.462 1.16 0.00 30.46 3.85
1223 1255 4.033358 GCAGTCGTAAACATCTCTTCCATG 59.967 45.833 0.00 0.00 0.00 3.66
1402 1440 4.891756 GCTACCAACCTACCACTGTCTATA 59.108 45.833 0.00 0.00 0.00 1.31
1414 1452 8.821817 TGATTATATGCATTAGCTACCAACCTA 58.178 33.333 3.54 0.00 42.74 3.08
1831 1878 4.019174 CTGGCATGTGGACCTTTCTATTT 58.981 43.478 0.00 0.00 0.00 1.40
1839 1886 1.656587 TTCTACTGGCATGTGGACCT 58.343 50.000 0.00 0.00 0.00 3.85
1917 1966 9.784531 AATCTACCATGATAACTAAATCACCAG 57.215 33.333 0.00 0.00 38.65 4.00
1993 2045 1.418264 TCCGACATGTGGTTTCCAAGA 59.582 47.619 1.15 0.00 34.18 3.02
2162 2228 6.313744 ACACTTGGAGAAAAGTTTAATCCG 57.686 37.500 12.15 4.42 38.34 4.18
2337 2410 6.094048 GCGTCCCATATAGCACATCAAAATAT 59.906 38.462 0.00 0.00 0.00 1.28
2490 2563 1.136305 TCGCCACTGTAGCTTGGATAC 59.864 52.381 6.34 0.00 34.46 2.24
3287 6100 4.406456 TGCTGCTTTTCCAAATCCTTCTA 58.594 39.130 0.00 0.00 0.00 2.10
3342 6155 4.947388 TCATTTGGAGTAACATACTTGCCC 59.053 41.667 0.00 0.00 39.59 5.36
3522 6335 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
3523 6336 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
3524 6337 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
3525 6338 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
3526 6339 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
3527 6340 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
3528 6341 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
3529 6342 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
3530 6343 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
3531 6344 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3532 6345 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3533 6346 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3534 6347 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3535 6348 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3536 6349 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3537 6350 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3538 6351 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3539 6352 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
3540 6353 5.666969 ATTATACACACACACACACACAC 57.333 39.130 0.00 0.00 0.00 3.82
3541 6354 7.657761 TGATAATTATACACACACACACACACA 59.342 33.333 0.00 0.00 0.00 3.72
3542 6355 8.024146 TGATAATTATACACACACACACACAC 57.976 34.615 0.00 0.00 0.00 3.82
3543 6356 8.608844 TTGATAATTATACACACACACACACA 57.391 30.769 0.00 0.00 0.00 3.72
3631 6464 9.923143 TTATCCACCACTATAAATACATTCGAG 57.077 33.333 0.00 0.00 0.00 4.04
3680 6513 4.236527 AGCCGAGGAAATCAAACCTAAT 57.763 40.909 0.00 0.00 36.57 1.73
3706 6539 3.531262 AGAAACACGAAAATACACGGC 57.469 42.857 0.00 0.00 0.00 5.68
3718 6555 9.498307 AACATAACACTTTTTAGAAGAAACACG 57.502 29.630 0.00 0.00 0.00 4.49
3770 6611 7.589395 CACACATAGTGCAATTAACAGGTTTA 58.411 34.615 0.00 0.00 42.15 2.01
3828 6669 5.124617 TCACTTATCGCAACAATTGGCAATA 59.875 36.000 14.05 0.00 0.00 1.90
3839 6680 4.946784 AATGGTTCTCACTTATCGCAAC 57.053 40.909 0.00 0.00 0.00 4.17
3884 6725 6.703319 TCTATGAAATTTTCCTCACGTACCA 58.297 36.000 6.68 0.00 0.00 3.25
3979 6821 0.462047 CGTCCACCATTGGTCTAGGC 60.462 60.000 5.04 0.00 44.35 3.93
4030 6872 1.559682 GACAAAGCTACATCTCCCCCA 59.440 52.381 0.00 0.00 0.00 4.96
4055 6897 4.621034 GTCCTTAACAACCATTTCATTGCG 59.379 41.667 0.00 0.00 0.00 4.85
4063 6905 5.543507 TTTGCATGTCCTTAACAACCATT 57.456 34.783 0.00 0.00 42.37 3.16
4090 6932 1.202348 CCCACTCATTTCCTTTTCGGC 59.798 52.381 0.00 0.00 0.00 5.54
4095 6937 1.614317 CGCTCCCCACTCATTTCCTTT 60.614 52.381 0.00 0.00 0.00 3.11
4160 7002 7.482654 TTGTTCTAGTTCAGAAATGTGTGAG 57.517 36.000 0.00 0.00 44.89 3.51
4161 7003 7.714813 TGATTGTTCTAGTTCAGAAATGTGTGA 59.285 33.333 0.00 0.00 44.89 3.58
4252 7094 7.549147 TCTACATACCTAACAACTTCACCTT 57.451 36.000 0.00 0.00 0.00 3.50
4281 7123 4.368315 TCACCATGCTATATGTTGTCGAC 58.632 43.478 9.11 9.11 0.00 4.20
4326 7168 4.979335 TCCAACATTCACACATTGACCTA 58.021 39.130 0.00 0.00 32.26 3.08
4327 7169 3.831323 TCCAACATTCACACATTGACCT 58.169 40.909 0.00 0.00 32.26 3.85
4334 7176 6.480763 AGTAATACCATCCAACATTCACACA 58.519 36.000 0.00 0.00 0.00 3.72
4432 7275 4.343323 CCCGACACATGCCACCCA 62.343 66.667 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.