AutoCloner

Multiple sequence alignment - TraesCS5A01G134400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G134400	chr5A	100.000	3021	0	0	1	3021	302990163	302993183	0.000000e+00	5579
1	TraesCS5A01G134400	chr5A	98.225	2760	46	3	263	3021	257553565	257556322	0.000000e+00	4822
2	TraesCS5A01G134400	chr2A	98.009	2762	32	3	262	3021	618956014	618958754	0.000000e+00	4774
3	TraesCS5A01G134400	chr2A	97.901	2763	51	4	261	3021	755097031	755094274	0.000000e+00	4774
4	TraesCS5A01G134400	chr2A	97.862	2760	55	4	263	3021	755104803	755102047	0.000000e+00	4767
5	TraesCS5A01G134400	chr2A	96.088	818	28	2	263	1080	471763299	471764112	0.000000e+00	1330
6	TraesCS5A01G134400	chr2A	83.650	263	37	5	1	262	239932552	239932295	3.010000e-60	243
7	TraesCS5A01G134400	chr4D	95.197	2769	98	17	261	3021	410305375	410308116	0.000000e+00	4344
8	TraesCS5A01G134400	chr4D	92.413	2781	135	33	263	3021	132439454	132436728	0.000000e+00	3897
9	TraesCS5A01G134400	chr5B	97.731	2204	49	1	819	3021	236069777	236067574	0.000000e+00	3792
10	TraesCS5A01G134400	chr7D	95.940	2118	69	5	263	2379	235511589	235509488	0.000000e+00	3419
11	TraesCS5A01G134400	chr7D	98.237	1758	30	1	1265	3021	72315541	72313784	0.000000e+00	3073
12	TraesCS5A01G134400	chr6B	95.403	1588	42	13	1451	3021	674204306	674202733	0.000000e+00	2499
13	TraesCS5A01G134400	chr6B	94.089	609	34	2	263	871	674204913	674204307	0.000000e+00	924
14	TraesCS5A01G134400	chr2B	88.667	1703	134	25	249	1930	493400150	493398486	0.000000e+00	2021
15	TraesCS5A01G134400	chrUn	84.954	1635	234	8	1391	3021	39283656	39282030	0.000000e+00	1646
16	TraesCS5A01G134400	chr4A	92.575	1037	50	4	264	1299	740666873	740667883	0.000000e+00	1463
17	TraesCS5A01G134400	chr4A	91.124	169	11	2	1	166	142904476	142904643	3.030000e-55	226
18	TraesCS5A01G134400	chr7A	92.075	265	18	1	1	262	503325539	503325275	1.320000e-98	370
19	TraesCS5A01G134400	chr6D	84.815	270	33	6	1	267	162249274	162249538	6.420000e-67	265

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G134400	chr5A	302990163	302993183	3020	False	5579.0	5579	100.000	1	3021	1	chr5A.!!$F2	3020
1	TraesCS5A01G134400	chr5A	257553565	257556322	2757	False	4822.0	4822	98.225	263	3021	1	chr5A.!!$F1	2758
2	TraesCS5A01G134400	chr2A	618956014	618958754	2740	False	4774.0	4774	98.009	262	3021	1	chr2A.!!$F2	2759
3	TraesCS5A01G134400	chr2A	755094274	755097031	2757	True	4774.0	4774	97.901	261	3021	1	chr2A.!!$R2	2760
4	TraesCS5A01G134400	chr2A	755102047	755104803	2756	True	4767.0	4767	97.862	263	3021	1	chr2A.!!$R3	2758
5	TraesCS5A01G134400	chr2A	471763299	471764112	813	False	1330.0	1330	96.088	263	1080	1	chr2A.!!$F1	817
6	TraesCS5A01G134400	chr4D	410305375	410308116	2741	False	4344.0	4344	95.197	261	3021	1	chr4D.!!$F1	2760
7	TraesCS5A01G134400	chr4D	132436728	132439454	2726	True	3897.0	3897	92.413	263	3021	1	chr4D.!!$R1	2758
8	TraesCS5A01G134400	chr5B	236067574	236069777	2203	True	3792.0	3792	97.731	819	3021	1	chr5B.!!$R1	2202
9	TraesCS5A01G134400	chr7D	235509488	235511589	2101	True	3419.0	3419	95.940	263	2379	1	chr7D.!!$R2	2116
10	TraesCS5A01G134400	chr7D	72313784	72315541	1757	True	3073.0	3073	98.237	1265	3021	1	chr7D.!!$R1	1756
11	TraesCS5A01G134400	chr6B	674202733	674204913	2180	True	1711.5	2499	94.746	263	3021	2	chr6B.!!$R1	2758
12	TraesCS5A01G134400	chr2B	493398486	493400150	1664	True	2021.0	2021	88.667	249	1930	1	chr2B.!!$R1	1681
13	TraesCS5A01G134400	chrUn	39282030	39283656	1626	True	1646.0	1646	84.954	1391	3021	1	chrUn.!!$R1	1630
14	TraesCS5A01G134400	chr4A	740666873	740667883	1010	False	1463.0	1463	92.575	264	1299	1	chr4A.!!$F2	1035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
65	66	0.245813	GTAGTTGGTGGTCCGGACTC	59.754	60.0	32.52	24.07	35.42	3.36	F
968	1024	0.469917	AGCAGGTTGACCCATATCCG	59.530	55.0	0.00	0.00	36.42	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1531	1590	3.705579	CTCTCATCCTCACTCTCACCATT	59.294	47.826	0.00	0.0	0.00	3.16	R
2843	2923	1.847890	CGGCCAGGTTGTTGGTTACG	61.848	60.000	2.24	0.0	40.49	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	4.735132	CGCGCTTGAAGGTCGGGA	62.735	66.667	5.56	0.00	38.22	5.14
33	34	3.119096	GCGCTTGAAGGTCGGGAC	61.119	66.667	0.00	0.00	0.00	4.46
34	35	2.657237	CGCTTGAAGGTCGGGACT	59.343	61.111	0.00	0.00	0.00	3.85
35	36	1.446272	CGCTTGAAGGTCGGGACTC	60.446	63.158	0.00	0.00	0.00	3.36
36	37	1.079057	GCTTGAAGGTCGGGACTCC	60.079	63.158	0.00	0.00	0.00	3.85
57	58	4.692475	GGCGGCGTAGTTGGTGGT	62.692	66.667	9.37	0.00	0.00	4.16
58	59	3.116531	GCGGCGTAGTTGGTGGTC	61.117	66.667	9.37	0.00	0.00	4.02
59	60	2.433664	CGGCGTAGTTGGTGGTCC	60.434	66.667	0.00	0.00	0.00	4.46
60	61	2.433664	GGCGTAGTTGGTGGTCCG	60.434	66.667	0.00	0.00	36.30	4.79
61	62	2.433664	GCGTAGTTGGTGGTCCGG	60.434	66.667	0.00	0.00	36.30	5.14
62	63	2.934570	GCGTAGTTGGTGGTCCGGA	61.935	63.158	0.00	0.00	36.30	5.14
63	64	1.080298	CGTAGTTGGTGGTCCGGAC	60.080	63.158	27.04	27.04	36.30	4.79
64	65	1.530013	CGTAGTTGGTGGTCCGGACT	61.530	60.000	32.52	14.63	36.88	3.85
65	66	0.245813	GTAGTTGGTGGTCCGGACTC	59.754	60.000	32.52	24.07	35.42	3.36
66	67	0.901580	TAGTTGGTGGTCCGGACTCC	60.902	60.000	32.52	30.51	35.42	3.85
67	68	2.122769	TTGGTGGTCCGGACTCCA	60.123	61.111	32.26	32.26	36.30	3.86
68	69	2.214216	TTGGTGGTCCGGACTCCAG	61.214	63.158	32.98	0.00	36.94	3.86
69	70	4.083862	GGTGGTCCGGACTCCAGC	62.084	72.222	32.52	27.31	43.27	4.85
70	71	4.436998	GTGGTCCGGACTCCAGCG	62.437	72.222	32.52	0.00	34.16	5.18
183	184	4.802051	CGGTGGCCAGGTGGATGG	62.802	72.222	5.11	0.00	43.72	3.51
204	205	4.082523	CACGGGGCGATGGAGTGT	62.083	66.667	0.00	0.00	0.00	3.55
205	206	4.082523	ACGGGGCGATGGAGTGTG	62.083	66.667	0.00	0.00	0.00	3.82
206	207	4.838152	CGGGGCGATGGAGTGTGG	62.838	72.222	0.00	0.00	0.00	4.17
207	208	3.717294	GGGGCGATGGAGTGTGGT	61.717	66.667	0.00	0.00	0.00	4.16
208	209	2.436646	GGGCGATGGAGTGTGGTG	60.437	66.667	0.00	0.00	0.00	4.17
209	210	2.436646	GGCGATGGAGTGTGGTGG	60.437	66.667	0.00	0.00	0.00	4.61
210	211	2.436646	GCGATGGAGTGTGGTGGG	60.437	66.667	0.00	0.00	0.00	4.61
211	212	3.068881	CGATGGAGTGTGGTGGGT	58.931	61.111	0.00	0.00	0.00	4.51
212	213	1.375908	CGATGGAGTGTGGTGGGTG	60.376	63.158	0.00	0.00	0.00	4.61
213	214	1.761174	GATGGAGTGTGGTGGGTGT	59.239	57.895	0.00	0.00	0.00	4.16
214	215	0.606401	GATGGAGTGTGGTGGGTGTG	60.606	60.000	0.00	0.00	0.00	3.82
215	216	1.352622	ATGGAGTGTGGTGGGTGTGT	61.353	55.000	0.00	0.00	0.00	3.72
216	217	1.525995	GGAGTGTGGTGGGTGTGTG	60.526	63.158	0.00	0.00	0.00	3.82
217	218	1.525995	GAGTGTGGTGGGTGTGTGG	60.526	63.158	0.00	0.00	0.00	4.17
218	219	3.216292	GTGTGGTGGGTGTGTGGC	61.216	66.667	0.00	0.00	0.00	5.01
219	220	4.514585	TGTGGTGGGTGTGTGGCC	62.515	66.667	0.00	0.00	0.00	5.36
220	221	4.204028	GTGGTGGGTGTGTGGCCT	62.204	66.667	3.32	0.00	0.00	5.19
221	222	4.202574	TGGTGGGTGTGTGGCCTG	62.203	66.667	3.32	0.00	0.00	4.85
222	223	4.974721	GGTGGGTGTGTGGCCTGG	62.975	72.222	3.32	0.00	0.00	4.45
223	224	4.204028	GTGGGTGTGTGGCCTGGT	62.204	66.667	3.32	0.00	0.00	4.00
224	225	4.202574	TGGGTGTGTGGCCTGGTG	62.203	66.667	3.32	0.00	0.00	4.17
234	235	4.221422	GCCTGGTGCGGCGATAGA	62.221	66.667	12.98	0.00	40.79	1.98
235	236	2.028190	CCTGGTGCGGCGATAGAG	59.972	66.667	12.98	0.00	39.76	2.43
236	237	2.028190	CTGGTGCGGCGATAGAGG	59.972	66.667	12.98	0.00	39.76	3.69
237	238	2.758327	TGGTGCGGCGATAGAGGT	60.758	61.111	12.98	0.00	39.76	3.85
238	239	2.279517	GGTGCGGCGATAGAGGTG	60.280	66.667	12.98	0.00	39.76	4.00
239	240	2.279517	GTGCGGCGATAGAGGTGG	60.280	66.667	12.98	0.00	39.76	4.61
240	241	2.441348	TGCGGCGATAGAGGTGGA	60.441	61.111	12.98	0.00	39.76	4.02
241	242	1.832608	TGCGGCGATAGAGGTGGAT	60.833	57.895	12.98	0.00	39.76	3.41
242	243	1.080434	GCGGCGATAGAGGTGGATC	60.080	63.158	12.98	0.00	39.76	3.36
243	244	1.210413	CGGCGATAGAGGTGGATCG	59.790	63.158	0.00	0.06	46.07	3.69
244	245	1.587054	GGCGATAGAGGTGGATCGG	59.413	63.158	6.43	0.00	44.03	4.18
245	246	1.587054	GCGATAGAGGTGGATCGGG	59.413	63.158	6.43	0.00	44.03	5.14
246	247	1.587054	CGATAGAGGTGGATCGGGC	59.413	63.158	0.00	0.00	40.96	6.13
247	248	0.896019	CGATAGAGGTGGATCGGGCT	60.896	60.000	0.00	0.00	40.96	5.19
248	249	1.343069	GATAGAGGTGGATCGGGCTT	58.657	55.000	0.00	0.00	0.00	4.35
249	250	1.001406	GATAGAGGTGGATCGGGCTTG	59.999	57.143	0.00	0.00	0.00	4.01
250	251	1.048724	TAGAGGTGGATCGGGCTTGG	61.049	60.000	0.00	0.00	0.00	3.61
251	252	3.406595	GAGGTGGATCGGGCTTGGG	62.407	68.421	0.00	0.00	0.00	4.12
252	253	4.506255	GGTGGATCGGGCTTGGGG	62.506	72.222	0.00	0.00	0.00	4.96
253	254	3.407967	GTGGATCGGGCTTGGGGA	61.408	66.667	0.00	0.00	0.00	4.81
254	255	2.368192	TGGATCGGGCTTGGGGAT	60.368	61.111	0.00	0.00	0.00	3.85
255	256	1.074090	TGGATCGGGCTTGGGGATA	60.074	57.895	0.00	0.00	0.00	2.59
256	257	0.696143	TGGATCGGGCTTGGGGATAA	60.696	55.000	0.00	0.00	0.00	1.75
257	258	0.476771	GGATCGGGCTTGGGGATAAA	59.523	55.000	0.00	0.00	0.00	1.40
258	259	1.545651	GGATCGGGCTTGGGGATAAAG	60.546	57.143	0.00	0.00	0.00	1.85
259	260	1.420138	GATCGGGCTTGGGGATAAAGA	59.580	52.381	0.00	0.00	0.00	2.52
283	284	8.501070	AGATGGAGAGAATTCCTTATTTGACAT	58.499	33.333	0.65	0.00	38.12	3.06
313	314	6.739331	AAAATGTGGTTCCTTATTTGACCA	57.261	33.333	0.00	0.00	39.72	4.02
323	326	7.308435	GTTCCTTATTTGACCATGAAGAACTG	58.692	38.462	0.00	0.00	0.00	3.16
968	1024	0.469917	AGCAGGTTGACCCATATCCG	59.530	55.000	0.00	0.00	36.42	4.18
1531	1590	5.499004	AAAGGACCAAGACTATGTTGCTA	57.501	39.130	0.00	0.00	0.00	3.49
1642	1701	5.513233	AGGAGTTGCATGAGGTAAATCATT	58.487	37.500	0.00	0.00	37.84	2.57
1643	1702	5.954150	AGGAGTTGCATGAGGTAAATCATTT	59.046	36.000	0.00	0.00	37.84	2.32
1868	1927	7.607607	TGCTTCTACAACAGATGATTTGTGTAT	59.392	33.333	0.00	0.00	36.61	2.29
2258	2319	1.202952	TGAAAGTTGTTGCCCCGGTAT	60.203	47.619	0.00	0.00	0.00	2.73
2268	2329	1.053424	GCCCCGGTATCATAGTCCAA	58.947	55.000	0.00	0.00	0.00	3.53
2709	2773	0.606401	TTGGGCTGCTGCTTACTCAC	60.606	55.000	15.64	0.00	39.59	3.51
2843	2923	8.167605	TCTCAACTATATGCAAGGTAGACTAC	57.832	38.462	3.86	3.86	0.00	2.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	4.735132	TCCCGACCTTCAAGCGCG	62.735	66.667	0.00	0.00	0.00	6.86
16	17	3.119096	GTCCCGACCTTCAAGCGC	61.119	66.667	0.00	0.00	0.00	5.92
17	18	1.446272	GAGTCCCGACCTTCAAGCG	60.446	63.158	0.00	0.00	0.00	4.68
18	19	1.079057	GGAGTCCCGACCTTCAAGC	60.079	63.158	0.00	0.00	0.00	4.01
40	41	4.692475	ACCACCAACTACGCCGCC	62.692	66.667	0.00	0.00	0.00	6.13
41	42	3.116531	GACCACCAACTACGCCGC	61.117	66.667	0.00	0.00	0.00	6.53
42	43	2.433664	GGACCACCAACTACGCCG	60.434	66.667	0.00	0.00	35.97	6.46
43	44	2.433664	CGGACCACCAACTACGCC	60.434	66.667	0.00	0.00	35.59	5.68
44	45	2.433664	CCGGACCACCAACTACGC	60.434	66.667	0.00	0.00	35.59	4.42
45	46	1.080298	GTCCGGACCACCAACTACG	60.080	63.158	24.75	0.00	35.59	3.51
46	47	0.245813	GAGTCCGGACCACCAACTAC	59.754	60.000	30.82	2.35	33.71	2.73
47	48	0.901580	GGAGTCCGGACCACCAACTA	60.902	60.000	30.98	0.00	33.71	2.24
48	49	2.214920	GGAGTCCGGACCACCAACT	61.215	63.158	30.98	15.14	35.44	3.16
49	50	2.346365	GGAGTCCGGACCACCAAC	59.654	66.667	30.98	17.47	35.59	3.77
50	51	2.122769	TGGAGTCCGGACCACCAA	60.123	61.111	34.18	23.09	36.10	3.67
51	52	2.603473	CTGGAGTCCGGACCACCA	60.603	66.667	33.88	33.88	37.00	4.17
52	53	4.083862	GCTGGAGTCCGGACCACC	62.084	72.222	30.82	30.31	32.44	4.61
53	54	4.436998	CGCTGGAGTCCGGACCAC	62.437	72.222	30.82	23.15	32.44	4.16
166	167	4.802051	CCATCCACCTGGCCACCG	62.802	72.222	0.00	0.00	34.44	4.94
187	188	4.082523	ACACTCCATCGCCCCGTG	62.083	66.667	0.00	0.00	0.00	4.94
188	189	4.082523	CACACTCCATCGCCCCGT	62.083	66.667	0.00	0.00	0.00	5.28
189	190	4.838152	CCACACTCCATCGCCCCG	62.838	72.222	0.00	0.00	0.00	5.73
190	191	3.717294	ACCACACTCCATCGCCCC	61.717	66.667	0.00	0.00	0.00	5.80
191	192	2.436646	CACCACACTCCATCGCCC	60.437	66.667	0.00	0.00	0.00	6.13
192	193	2.436646	CCACCACACTCCATCGCC	60.437	66.667	0.00	0.00	0.00	5.54
193	194	2.436646	CCCACCACACTCCATCGC	60.437	66.667	0.00	0.00	0.00	4.58
194	195	1.375908	CACCCACCACACTCCATCG	60.376	63.158	0.00	0.00	0.00	3.84
195	196	0.606401	CACACCCACCACACTCCATC	60.606	60.000	0.00	0.00	0.00	3.51
196	197	1.352622	ACACACCCACCACACTCCAT	61.353	55.000	0.00	0.00	0.00	3.41
197	198	1.998438	ACACACCCACCACACTCCA	60.998	57.895	0.00	0.00	0.00	3.86
198	199	1.525995	CACACACCCACCACACTCC	60.526	63.158	0.00	0.00	0.00	3.85
199	200	1.525995	CCACACACCCACCACACTC	60.526	63.158	0.00	0.00	0.00	3.51
200	201	2.595095	CCACACACCCACCACACT	59.405	61.111	0.00	0.00	0.00	3.55
201	202	3.216292	GCCACACACCCACCACAC	61.216	66.667	0.00	0.00	0.00	3.82
202	203	4.514585	GGCCACACACCCACCACA	62.515	66.667	0.00	0.00	0.00	4.17
203	204	4.204028	AGGCCACACACCCACCAC	62.204	66.667	5.01	0.00	0.00	4.16
204	205	4.202574	CAGGCCACACACCCACCA	62.203	66.667	5.01	0.00	0.00	4.17
205	206	4.974721	CCAGGCCACACACCCACC	62.975	72.222	5.01	0.00	0.00	4.61
206	207	4.204028	ACCAGGCCACACACCCAC	62.204	66.667	5.01	0.00	0.00	4.61
207	208	4.202574	CACCAGGCCACACACCCA	62.203	66.667	5.01	0.00	0.00	4.51
218	219	2.028190	CTCTATCGCCGCACCAGG	59.972	66.667	0.00	0.00	0.00	4.45
219	220	2.028190	CCTCTATCGCCGCACCAG	59.972	66.667	0.00	0.00	0.00	4.00
220	221	2.758327	ACCTCTATCGCCGCACCA	60.758	61.111	0.00	0.00	0.00	4.17
221	222	2.279517	CACCTCTATCGCCGCACC	60.280	66.667	0.00	0.00	0.00	5.01
222	223	2.088674	ATCCACCTCTATCGCCGCAC	62.089	60.000	0.00	0.00	0.00	5.34
223	224	1.806461	GATCCACCTCTATCGCCGCA	61.806	60.000	0.00	0.00	0.00	5.69
224	225	1.080434	GATCCACCTCTATCGCCGC	60.080	63.158	0.00	0.00	0.00	6.53
225	226	1.210413	CGATCCACCTCTATCGCCG	59.790	63.158	0.00	0.00	38.61	6.46
226	227	1.587054	CCGATCCACCTCTATCGCC	59.413	63.158	0.00	0.00	42.77	5.54
227	228	1.587054	CCCGATCCACCTCTATCGC	59.413	63.158	0.00	0.00	42.77	4.58
228	229	0.896019	AGCCCGATCCACCTCTATCG	60.896	60.000	0.00	0.00	43.53	2.92
229	230	1.001406	CAAGCCCGATCCACCTCTATC	59.999	57.143	0.00	0.00	0.00	2.08
230	231	1.051812	CAAGCCCGATCCACCTCTAT	58.948	55.000	0.00	0.00	0.00	1.98
231	232	1.048724	CCAAGCCCGATCCACCTCTA	61.049	60.000	0.00	0.00	0.00	2.43
232	233	2.370445	CCAAGCCCGATCCACCTCT	61.370	63.158	0.00	0.00	0.00	3.69
233	234	2.190578	CCAAGCCCGATCCACCTC	59.809	66.667	0.00	0.00	0.00	3.85
234	235	3.411517	CCCAAGCCCGATCCACCT	61.412	66.667	0.00	0.00	0.00	4.00
235	236	4.506255	CCCCAAGCCCGATCCACC	62.506	72.222	0.00	0.00	0.00	4.61
236	237	1.415672	TATCCCCAAGCCCGATCCAC	61.416	60.000	0.00	0.00	0.00	4.02
237	238	0.696143	TTATCCCCAAGCCCGATCCA	60.696	55.000	0.00	0.00	0.00	3.41
238	239	0.476771	TTTATCCCCAAGCCCGATCC	59.523	55.000	0.00	0.00	0.00	3.36
239	240	1.420138	TCTTTATCCCCAAGCCCGATC	59.580	52.381	0.00	0.00	0.00	3.69
240	241	1.518367	TCTTTATCCCCAAGCCCGAT	58.482	50.000	0.00	0.00	0.00	4.18
241	242	1.142870	CATCTTTATCCCCAAGCCCGA	59.857	52.381	0.00	0.00	0.00	5.14
242	243	1.609208	CATCTTTATCCCCAAGCCCG	58.391	55.000	0.00	0.00	0.00	6.13
243	244	1.499007	TCCATCTTTATCCCCAAGCCC	59.501	52.381	0.00	0.00	0.00	5.19
244	245	2.443255	TCTCCATCTTTATCCCCAAGCC	59.557	50.000	0.00	0.00	0.00	4.35
245	246	3.392616	TCTCTCCATCTTTATCCCCAAGC	59.607	47.826	0.00	0.00	0.00	4.01
246	247	5.636903	TTCTCTCCATCTTTATCCCCAAG	57.363	43.478	0.00	0.00	0.00	3.61
247	248	6.410853	GGAATTCTCTCCATCTTTATCCCCAA	60.411	42.308	5.23	0.00	35.36	4.12
248	249	5.073691	GGAATTCTCTCCATCTTTATCCCCA	59.926	44.000	5.23	0.00	35.36	4.96
249	250	5.311913	AGGAATTCTCTCCATCTTTATCCCC	59.688	44.000	5.23	0.00	38.02	4.81
250	251	6.446909	AGGAATTCTCTCCATCTTTATCCC	57.553	41.667	5.23	0.00	38.02	3.85
255	256	9.183368	GTCAAATAAGGAATTCTCTCCATCTTT	57.817	33.333	5.23	0.00	38.02	2.52
256	257	8.331740	TGTCAAATAAGGAATTCTCTCCATCTT	58.668	33.333	5.23	1.09	38.02	2.40
257	258	7.865820	TGTCAAATAAGGAATTCTCTCCATCT	58.134	34.615	5.23	0.00	38.02	2.90
258	259	8.688747	ATGTCAAATAAGGAATTCTCTCCATC	57.311	34.615	5.23	0.00	38.02	3.51
382	385	7.218583	ACAATTTAACGAAACGGTGTAACAAAG	59.781	33.333	0.00	0.00	39.98	2.77
779	798	2.588314	GCAGCTGAGCTCATCGGG	60.588	66.667	20.43	11.97	36.40	5.14
968	1024	5.505173	ACTTATGCATGAACATTGCTACC	57.495	39.130	10.16	0.00	0.00	3.18
1030	1086	7.408756	TGCCAAGCAATCTAATTTTCAGTAT	57.591	32.000	0.00	0.00	34.76	2.12
1271	1328	5.316167	ACATCTGCACCATCTTTGACTTAA	58.684	37.500	0.00	0.00	0.00	1.85
1531	1590	3.705579	CTCTCATCCTCACTCTCACCATT	59.294	47.826	0.00	0.00	0.00	3.16
1868	1927	6.569226	GCAAAGTTAGAGAGTTACCACTACGA	60.569	42.308	0.00	0.00	31.22	3.43
2258	2319	7.111466	TGTGTGATGATCAATTTGGACTATGA	58.889	34.615	0.00	0.00	0.00	2.15
2709	2773	7.316640	TGTTTGTCAAATAAATATGGGTTCCG	58.683	34.615	0.40	0.00	0.00	4.30
2776	2856	5.681639	ACCTATTGTGCCACTTCCTTATAC	58.318	41.667	0.00	0.00	0.00	1.47
2843	2923	1.847890	CGGCCAGGTTGTTGGTTACG	61.848	60.000	2.24	0.00	40.49	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.