Multiple sequence alignment - TraesCS5A01G134200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G134200 chr5A 100.000 6597 0 0 1 6597 302551147 302557743 0.000000e+00 12183.0
1 TraesCS5A01G134200 chr5A 90.000 150 15 0 6306 6455 680595584 680595733 1.880000e-45 195.0
2 TraesCS5A01G134200 chr5A 96.522 115 3 1 6484 6597 357451510 357451624 8.730000e-44 189.0
3 TraesCS5A01G134200 chr5A 88.889 72 8 0 2063 2134 302552982 302553053 9.110000e-14 89.8
4 TraesCS5A01G134200 chr5A 88.889 72 8 0 1836 1907 302553209 302553280 9.110000e-14 89.8
5 TraesCS5A01G134200 chr5D 96.082 3088 100 11 2804 5881 221478537 221475461 0.000000e+00 5012.0
6 TraesCS5A01G134200 chr5D 91.498 2576 102 40 147 2701 221481014 221478535 0.000000e+00 3435.0
7 TraesCS5A01G134200 chr5D 88.192 542 22 13 5922 6447 221475019 221474504 5.660000e-170 608.0
8 TraesCS5A01G134200 chr5D 96.522 115 4 0 6483 6597 522359123 522359237 2.430000e-44 191.0
9 TraesCS5A01G134200 chr5D 96.429 112 4 0 6486 6597 252656671 252656560 1.130000e-42 185.0
10 TraesCS5A01G134200 chr5D 88.667 150 11 3 1 144 221481215 221481066 1.890000e-40 178.0
11 TraesCS5A01G134200 chr5D 93.617 94 6 0 2177 2270 420277140 420277233 2.480000e-29 141.0
12 TraesCS5A01G134200 chr5D 91.489 94 8 0 2177 2270 252217276 252217183 5.370000e-26 130.0
13 TraesCS5A01G134200 chr5D 91.045 67 6 0 2068 2134 221479374 221479308 2.530000e-14 91.6
14 TraesCS5A01G134200 chr5D 88.889 72 8 0 1836 1907 221479152 221479081 9.110000e-14 89.8
15 TraesCS5A01G134200 chr5B 91.394 2475 111 44 234 2679 244011734 244009333 0.000000e+00 3297.0
16 TraesCS5A01G134200 chr5B 94.455 2092 82 17 2972 5035 244008856 244006771 0.000000e+00 3190.0
17 TraesCS5A01G134200 chr5B 95.035 1289 45 8 5038 6312 244006690 244005407 0.000000e+00 2008.0
18 TraesCS5A01G134200 chr5B 95.210 167 7 1 2809 2975 244009335 244009170 5.070000e-66 263.0
19 TraesCS5A01G134200 chr5B 92.800 125 8 1 6474 6597 183331634 183331510 5.260000e-41 180.0
20 TraesCS5A01G134200 chr5B 90.278 72 7 0 2063 2134 244010163 244010092 1.960000e-15 95.3
21 TraesCS5A01G134200 chr5B 88.889 72 8 0 1836 1907 244009936 244009865 9.110000e-14 89.8
22 TraesCS5A01G134200 chr1D 84.871 1745 191 42 3332 5055 27578453 27576761 0.000000e+00 1692.0
23 TraesCS5A01G134200 chr1D 87.103 977 91 22 3356 4322 27546864 27545913 0.000000e+00 1074.0
24 TraesCS5A01G134200 chr1D 89.279 513 48 6 5176 5683 27576584 27576074 2.590000e-178 636.0
25 TraesCS5A01G134200 chr1D 84.652 632 80 10 5057 5683 27540742 27540123 1.220000e-171 614.0
26 TraesCS5A01G134200 chr1D 81.367 746 97 19 4320 5055 27541492 27540779 2.670000e-158 569.0
27 TraesCS5A01G134200 chr1D 80.592 845 69 48 1030 1850 27579443 27578670 1.240000e-156 564.0
28 TraesCS5A01G134200 chr1D 80.863 695 58 36 991 1652 27555964 27555312 1.660000e-130 477.0
29 TraesCS5A01G134200 chr1D 85.222 203 26 3 2461 2659 27578651 27578449 8.670000e-49 206.0
30 TraesCS5A01G134200 chr1D 84.314 204 27 4 2461 2659 27549007 27548804 1.880000e-45 195.0
31 TraesCS5A01G134200 chr1D 91.111 90 8 0 2176 2265 120537702 120537613 8.980000e-24 122.0
32 TraesCS5A01G134200 chr1D 91.250 80 6 1 1772 1850 27549105 27549026 2.520000e-19 108.0
33 TraesCS5A01G134200 chr1A 84.765 1595 178 34 3478 5034 28363387 28361820 0.000000e+00 1539.0
34 TraesCS5A01G134200 chr1A 84.345 626 81 10 5059 5679 28361765 28361152 1.220000e-166 597.0
35 TraesCS5A01G134200 chr1A 84.563 583 79 6 5057 5638 28379970 28379398 9.600000e-158 568.0
36 TraesCS5A01G134200 chr1A 84.589 584 74 9 5057 5638 28605519 28604950 3.450000e-157 566.0
37 TraesCS5A01G134200 chr1A 87.143 490 34 13 991 1473 28364572 28364105 4.530000e-146 529.0
38 TraesCS5A01G134200 chr1A 83.636 220 27 3 5851 6061 28361046 28360827 1.450000e-46 198.0
39 TraesCS5A01G134200 chr1A 97.248 109 3 0 2698 2806 154451243 154451135 1.130000e-42 185.0
40 TraesCS5A01G134200 chr1B 85.286 1536 170 35 3531 5034 43045371 43043860 0.000000e+00 1533.0
41 TraesCS5A01G134200 chr1B 89.567 508 46 6 5181 5683 43043705 43043200 7.210000e-179 638.0
42 TraesCS5A01G134200 chr1B 83.860 570 46 25 986 1545 43047654 43047121 9.880000e-138 501.0
43 TraesCS5A01G134200 chr1B 81.849 584 81 13 5057 5638 43215773 43215213 1.000000e-127 468.0
44 TraesCS5A01G134200 chr1B 80.422 332 38 10 5735 6055 43043198 43042883 1.850000e-55 228.0
45 TraesCS5A01G134200 chr1B 85.222 203 26 3 2461 2659 43046860 43046658 8.670000e-49 206.0
46 TraesCS5A01G134200 chr1B 94.915 118 5 1 6481 6597 652815817 652815700 4.060000e-42 183.0
47 TraesCS5A01G134200 chr1B 87.129 101 11 1 2169 2269 545209029 545208931 5.410000e-21 113.0
48 TraesCS5A01G134200 chr2D 81.818 429 74 4 3717 4143 460728362 460727936 2.260000e-94 357.0
49 TraesCS5A01G134200 chr2D 96.522 115 3 1 2698 2811 65564827 65564713 8.730000e-44 189.0
50 TraesCS5A01G134200 chr2D 95.652 115 5 0 6483 6597 74556732 74556618 1.130000e-42 185.0
51 TraesCS5A01G134200 chr2A 82.697 393 66 2 3741 4132 603549911 603549520 1.360000e-91 348.0
52 TraesCS5A01G134200 chr2A 97.297 111 3 0 6487 6597 100032739 100032849 8.730000e-44 189.0
53 TraesCS5A01G134200 chr2A 95.726 117 4 1 2698 2813 205919778 205919894 3.140000e-43 187.0
54 TraesCS5A01G134200 chr2A 87.578 161 18 2 1297 1456 603550575 603550416 1.130000e-42 185.0
55 TraesCS5A01G134200 chr2B 81.579 418 67 9 3717 4129 541944963 541944551 2.950000e-88 337.0
56 TraesCS5A01G134200 chr2B 88.202 178 19 2 1297 1473 541945410 541945234 1.860000e-50 211.0
57 TraesCS5A01G134200 chr2B 96.491 114 4 0 6484 6597 507197886 507197999 8.730000e-44 189.0
58 TraesCS5A01G134200 chr6B 91.333 150 10 3 6306 6454 82160038 82159891 1.120000e-47 202.0
59 TraesCS5A01G134200 chr6B 86.364 154 12 6 6308 6454 132347246 132347397 6.850000e-35 159.0
60 TraesCS5A01G134200 chr6B 85.393 89 13 0 6205 6293 408693031 408692943 7.040000e-15 93.5
61 TraesCS5A01G134200 chr6A 91.333 150 10 3 6306 6454 47485326 47485473 1.120000e-47 202.0
62 TraesCS5A01G134200 chr6A 94.937 79 4 0 2184 2262 311856916 311856994 2.500000e-24 124.0
63 TraesCS5A01G134200 chr7D 95.122 123 4 2 2687 2808 126669816 126669695 6.750000e-45 193.0
64 TraesCS5A01G134200 chr4B 94.444 126 4 3 2693 2818 25925561 25925439 2.430000e-44 191.0
65 TraesCS5A01G134200 chr4B 88.356 146 17 0 6306 6451 642626873 642627018 6.800000e-40 176.0
66 TraesCS5A01G134200 chr7B 95.726 117 5 0 2689 2805 27494511 27494395 8.730000e-44 189.0
67 TraesCS5A01G134200 chr7B 90.323 93 9 0 2177 2269 103891441 103891533 8.980000e-24 122.0
68 TraesCS5A01G134200 chr3A 96.522 115 3 1 6484 6597 175365439 175365325 8.730000e-44 189.0
69 TraesCS5A01G134200 chr3D 95.041 121 3 3 2685 2805 326723580 326723697 3.140000e-43 187.0
70 TraesCS5A01G134200 chr3D 84.106 151 14 8 6308 6453 609075416 609075271 3.210000e-28 137.0
71 TraesCS5A01G134200 chr3D 92.222 90 6 1 2177 2265 4197022 4197111 6.940000e-25 126.0
72 TraesCS5A01G134200 chr3D 91.111 90 8 0 2177 2266 157099442 157099353 8.980000e-24 122.0
73 TraesCS5A01G134200 chr3D 91.011 89 8 0 2177 2265 381989158 381989070 3.230000e-23 121.0
74 TraesCS5A01G134200 chr3B 95.726 117 4 1 2698 2813 454671490 454671374 3.140000e-43 187.0
75 TraesCS5A01G134200 chr6D 94.958 119 5 1 2696 2813 112344373 112344491 1.130000e-42 185.0
76 TraesCS5A01G134200 chr6D 100.000 28 0 0 6176 6203 108225008 108225035 1.200000e-02 52.8
77 TraesCS5A01G134200 chr4D 85.393 178 23 2 6306 6480 499583320 499583497 1.460000e-41 182.0
78 TraesCS5A01G134200 chrUn 90.991 111 6 3 6308 6416 281540390 281540498 5.330000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G134200 chr5A 302551147 302557743 6596 False 12183.000000 12183 100.000000 1 6597 1 chr5A.!!$F1 6596
1 TraesCS5A01G134200 chr5D 221474504 221481215 6711 True 1569.066667 5012 90.728833 1 6447 6 chr5D.!!$R3 6446
2 TraesCS5A01G134200 chr5B 244005407 244011734 6327 True 1490.516667 3297 92.543500 234 6312 6 chr5B.!!$R2 6078
3 TraesCS5A01G134200 chr1D 27576074 27579443 3369 True 774.500000 1692 84.991000 1030 5683 4 chr1D.!!$R5 4653
4 TraesCS5A01G134200 chr1D 27540123 27541492 1369 True 591.500000 614 83.009500 4320 5683 2 chr1D.!!$R3 1363
5 TraesCS5A01G134200 chr1D 27555312 27555964 652 True 477.000000 477 80.863000 991 1652 1 chr1D.!!$R1 661
6 TraesCS5A01G134200 chr1D 27545913 27549105 3192 True 459.000000 1074 87.555667 1772 4322 3 chr1D.!!$R4 2550
7 TraesCS5A01G134200 chr1A 28360827 28364572 3745 True 715.750000 1539 84.972250 991 6061 4 chr1A.!!$R4 5070
8 TraesCS5A01G134200 chr1A 28379398 28379970 572 True 568.000000 568 84.563000 5057 5638 1 chr1A.!!$R1 581
9 TraesCS5A01G134200 chr1A 28604950 28605519 569 True 566.000000 566 84.589000 5057 5638 1 chr1A.!!$R2 581
10 TraesCS5A01G134200 chr1B 43042883 43047654 4771 True 621.200000 1533 84.871400 986 6055 5 chr1B.!!$R4 5069
11 TraesCS5A01G134200 chr1B 43215213 43215773 560 True 468.000000 468 81.849000 5057 5638 1 chr1B.!!$R1 581
12 TraesCS5A01G134200 chr2A 603549520 603550575 1055 True 266.500000 348 85.137500 1297 4132 2 chr2A.!!$R1 2835
13 TraesCS5A01G134200 chr2B 541944551 541945410 859 True 274.000000 337 84.890500 1297 4129 2 chr2B.!!$R1 2832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 927 0.323302 TCCTTTATGTCAGGCACGCA 59.677 50.000 0.00 0.00 0.0 5.24 F
1515 1658 1.687368 CCGTTGCTACTAGTACCCCCT 60.687 57.143 0.00 0.00 0.0 4.79 F
2326 2560 0.108615 GAGTCGGCACTGCACAGTAT 60.109 55.000 2.38 0.00 40.2 2.12 F
2714 2967 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.0 4.55 F
3039 3610 1.282157 AGGCAATACAAGTCTCACCCC 59.718 52.381 0.00 0.00 0.0 4.95 F
4785 8490 2.408050 CTGTGCACTTCAGGTCTGTAC 58.592 52.381 19.41 0.00 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1988 1.000506 AGTTCGCCGAAGAAAGTGCTA 59.999 47.619 0.00 0.00 0.00 3.49 R
2699 2952 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85 R
3631 7270 0.179234 TCAGGTTGTTCCGCTCACAA 59.821 50.000 0.00 0.00 41.99 3.33 R
4505 8190 2.126882 TCACATAGATCAGGTTGGGGG 58.873 52.381 0.00 0.00 0.00 5.40 R
4852 8562 1.204704 GGGGCCTTGAAACATAAGCAC 59.795 52.381 0.84 0.00 0.00 4.40 R
6402 10684 0.331137 TACTATGGGAGGGGAGGGGA 60.331 60.000 0.00 0.00 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 0.725686 ACGTGGAGTCGATGTAGACG 59.274 55.000 0.00 0.00 45.26 4.18
80 81 0.725686 CGTGGAGTCGATGTAGACGT 59.274 55.000 0.00 0.00 45.26 4.34
81 82 1.529214 CGTGGAGTCGATGTAGACGTG 60.529 57.143 0.00 0.00 45.26 4.49
82 83 1.092348 TGGAGTCGATGTAGACGTGG 58.908 55.000 0.00 0.00 45.26 4.94
84 85 1.331138 GGAGTCGATGTAGACGTGGAG 59.669 57.143 0.00 0.00 45.26 3.86
95 102 6.132791 TGTAGACGTGGAGTATTGATCTTC 57.867 41.667 0.00 0.00 0.00 2.87
100 107 5.794894 ACGTGGAGTATTGATCTTCAACTT 58.205 37.500 0.00 0.00 39.45 2.66
103 110 6.035435 CGTGGAGTATTGATCTTCAACTTGAG 59.965 42.308 0.00 0.00 39.45 3.02
108 115 7.327214 AGTATTGATCTTCAACTTGAGACCTC 58.673 38.462 0.00 0.00 39.45 3.85
123 130 2.906389 AGACCTCCTTGCACTGATACAA 59.094 45.455 0.00 0.00 0.00 2.41
168 224 4.374399 CAATAATGCCAAGGAGCCATTTC 58.626 43.478 0.00 0.00 0.00 2.17
231 287 8.984891 TTTCCTACATTCGAACGTAAATCTAA 57.015 30.769 5.51 0.00 0.00 2.10
232 288 9.590451 TTTCCTACATTCGAACGTAAATCTAAT 57.410 29.630 5.51 0.00 0.00 1.73
266 322 4.383989 TGGTGACATATAGCACATGCTTCA 60.384 41.667 12.40 6.40 42.51 3.02
540 604 2.679092 CAGGCTTCCCATCCAGCA 59.321 61.111 0.00 0.00 37.81 4.41
567 631 1.481871 CCGCCTCCACTTCTACCTTA 58.518 55.000 0.00 0.00 0.00 2.69
599 663 3.897122 GCCCCTCACCCACACCAA 61.897 66.667 0.00 0.00 0.00 3.67
804 873 1.904032 CCTCTCTGCAACTCCCCTC 59.096 63.158 0.00 0.00 0.00 4.30
805 874 0.617249 CCTCTCTGCAACTCCCCTCT 60.617 60.000 0.00 0.00 0.00 3.69
810 879 1.613630 TGCAACTCCCCTCTCCTCC 60.614 63.158 0.00 0.00 0.00 4.30
823 892 2.041405 CCTCCTCCTCCCCCACTC 60.041 72.222 0.00 0.00 0.00 3.51
846 915 3.267031 CCTCCAACTTCCCACTCCTTTAT 59.733 47.826 0.00 0.00 0.00 1.40
847 916 4.265073 CTCCAACTTCCCACTCCTTTATG 58.735 47.826 0.00 0.00 0.00 1.90
849 918 4.010349 CCAACTTCCCACTCCTTTATGTC 58.990 47.826 0.00 0.00 0.00 3.06
851 920 4.559862 ACTTCCCACTCCTTTATGTCAG 57.440 45.455 0.00 0.00 0.00 3.51
853 922 1.559682 TCCCACTCCTTTATGTCAGGC 59.440 52.381 0.00 0.00 0.00 4.85
854 923 1.281867 CCCACTCCTTTATGTCAGGCA 59.718 52.381 0.00 0.00 0.00 4.75
855 924 2.359900 CCACTCCTTTATGTCAGGCAC 58.640 52.381 0.00 0.00 0.00 5.01
856 925 2.002586 CACTCCTTTATGTCAGGCACG 58.997 52.381 0.00 0.00 0.00 5.34
857 926 1.009829 CTCCTTTATGTCAGGCACGC 58.990 55.000 0.00 0.00 0.00 5.34
858 927 0.323302 TCCTTTATGTCAGGCACGCA 59.677 50.000 0.00 0.00 0.00 5.24
934 1018 2.091333 GGAGGAGGAGGAGATCTCTTGT 60.091 54.545 21.81 7.52 42.10 3.16
989 1073 3.707189 GAGGGGAGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
1515 1658 1.687368 CCGTTGCTACTAGTACCCCCT 60.687 57.143 0.00 0.00 0.00 4.79
1518 1668 2.694109 GTTGCTACTAGTACCCCCTCTG 59.306 54.545 0.00 0.00 0.00 3.35
1521 1671 2.357986 GCTACTAGTACCCCCTCTGTGT 60.358 54.545 0.00 0.00 0.00 3.72
1525 1675 3.978672 ACTAGTACCCCCTCTGTGTTTTT 59.021 43.478 0.00 0.00 0.00 1.94
1555 1744 7.355778 AGAATCGACTTGAATCTGTTGTTTTC 58.644 34.615 0.00 0.00 35.48 2.29
1572 1761 4.220821 TGTTTTCCCAAGCTTGTTGTGTAA 59.779 37.500 24.35 8.45 0.00 2.41
1573 1762 4.647424 TTTCCCAAGCTTGTTGTGTAAG 57.353 40.909 24.35 6.88 0.00 2.34
1574 1763 3.290948 TCCCAAGCTTGTTGTGTAAGT 57.709 42.857 24.35 0.00 0.00 2.24
1652 1882 3.385384 TGGCGCTCTCTGGTGAGG 61.385 66.667 7.64 0.00 40.58 3.86
1770 2000 6.207614 AGTTGGGATTTTCTAGCACTTTCTTC 59.792 38.462 0.00 0.00 0.00 2.87
1865 2099 7.082700 TCGACATGTTGCATTTTGTACATAT 57.917 32.000 8.34 0.00 30.53 1.78
2004 2238 5.338056 CCTTAGGAATTGGTACTGCACAGTA 60.338 44.000 6.41 6.41 42.54 2.74
2050 2284 6.303970 CACACTTTGCTCTGATTGAATTAACG 59.696 38.462 0.00 0.00 0.00 3.18
2071 2305 2.877097 TGCCCAGAGTTAGCAATCAA 57.123 45.000 0.00 0.00 32.56 2.57
2201 2435 2.223572 CGCTCCATCCCAAAATAAGTGC 60.224 50.000 0.00 0.00 0.00 4.40
2209 2443 2.948979 CCCAAAATAAGTGCCGCTGATA 59.051 45.455 0.00 0.00 0.00 2.15
2210 2444 3.569701 CCCAAAATAAGTGCCGCTGATAT 59.430 43.478 0.00 0.00 0.00 1.63
2212 2446 5.106555 CCCAAAATAAGTGCCGCTGATATAG 60.107 44.000 0.00 0.00 0.00 1.31
2213 2447 5.470098 CCAAAATAAGTGCCGCTGATATAGT 59.530 40.000 0.00 0.00 0.00 2.12
2214 2448 6.649141 CCAAAATAAGTGCCGCTGATATAGTA 59.351 38.462 0.00 0.00 0.00 1.82
2215 2449 7.360101 CCAAAATAAGTGCCGCTGATATAGTAC 60.360 40.741 0.00 0.00 0.00 2.73
2216 2450 5.977489 ATAAGTGCCGCTGATATAGTACA 57.023 39.130 0.00 0.00 0.00 2.90
2218 2452 4.665833 AGTGCCGCTGATATAGTACAAA 57.334 40.909 0.00 0.00 0.00 2.83
2219 2453 4.621991 AGTGCCGCTGATATAGTACAAAG 58.378 43.478 0.00 0.00 0.00 2.77
2251 2485 3.071479 TCAGCGACACTTATTTTGGGAC 58.929 45.455 0.00 0.00 0.00 4.46
2278 2512 7.229581 AGGGAGTATTAGATTATCCGAACAC 57.770 40.000 0.00 0.00 0.00 3.32
2312 2546 0.388649 CCGTCTCACCTTTGGAGTCG 60.389 60.000 0.00 0.00 41.41 4.18
2326 2560 0.108615 GAGTCGGCACTGCACAGTAT 60.109 55.000 2.38 0.00 40.20 2.12
2662 2915 9.661563 ATTTCTTGTTTTCATGCATGTGAATAT 57.338 25.926 25.43 11.77 37.88 1.28
2690 2943 9.124807 CTTTAATTGAAGTTATTTCGTTGTCCC 57.875 33.333 1.87 0.00 38.71 4.46
2693 2946 4.963373 TGAAGTTATTTCGTTGTCCCTCA 58.037 39.130 0.00 0.00 38.71 3.86
2698 2951 6.708285 AGTTATTTCGTTGTCCCTCATAACT 58.292 36.000 0.00 0.00 0.00 2.24
2699 2952 7.844009 AGTTATTTCGTTGTCCCTCATAACTA 58.156 34.615 0.00 0.00 32.56 2.24
2700 2953 7.763071 AGTTATTTCGTTGTCCCTCATAACTAC 59.237 37.037 0.00 0.00 32.56 2.73
2701 2954 5.733620 TTTCGTTGTCCCTCATAACTACT 57.266 39.130 0.00 0.00 0.00 2.57
2702 2955 4.978083 TCGTTGTCCCTCATAACTACTC 57.022 45.455 0.00 0.00 0.00 2.59
2703 2956 3.698040 TCGTTGTCCCTCATAACTACTCC 59.302 47.826 0.00 0.00 0.00 3.85
2704 2957 3.181478 CGTTGTCCCTCATAACTACTCCC 60.181 52.174 0.00 0.00 0.00 4.30
2705 2958 4.031611 GTTGTCCCTCATAACTACTCCCT 58.968 47.826 0.00 0.00 0.00 4.20
2706 2959 3.912248 TGTCCCTCATAACTACTCCCTC 58.088 50.000 0.00 0.00 0.00 4.30
2707 2960 3.232662 GTCCCTCATAACTACTCCCTCC 58.767 54.545 0.00 0.00 0.00 4.30
2708 2961 2.158505 TCCCTCATAACTACTCCCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
2709 2962 2.424523 CCCTCATAACTACTCCCTCCGT 60.425 54.545 0.00 0.00 0.00 4.69
2710 2963 3.297736 CCTCATAACTACTCCCTCCGTT 58.702 50.000 0.00 0.00 0.00 4.44
2711 2964 3.318557 CCTCATAACTACTCCCTCCGTTC 59.681 52.174 0.00 0.00 0.00 3.95
2712 2965 2.947652 TCATAACTACTCCCTCCGTTCG 59.052 50.000 0.00 0.00 0.00 3.95
2713 2966 1.755179 TAACTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
2714 2967 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2715 2968 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2716 2969 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
2717 2970 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2718 2971 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2719 2972 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2720 2973 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2721 2974 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2722 2975 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2723 2976 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2724 2977 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2725 2978 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2726 2979 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
2727 2980 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
2728 2981 3.124636 CCGTTCGGAATTACTTGTCTTGG 59.875 47.826 5.19 0.00 0.00 3.61
2729 2982 3.991773 CGTTCGGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
2730 2983 4.449743 CGTTCGGAATTACTTGTCTTGGAA 59.550 41.667 0.00 0.00 0.00 3.53
2731 2984 5.049954 CGTTCGGAATTACTTGTCTTGGAAA 60.050 40.000 0.00 0.00 0.00 3.13
2732 2985 6.348213 CGTTCGGAATTACTTGTCTTGGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
2733 2986 6.494893 TCGGAATTACTTGTCTTGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
2734 2987 5.414454 TCGGAATTACTTGTCTTGGAAATGG 59.586 40.000 0.00 0.00 0.00 3.16
2735 2988 5.414454 CGGAATTACTTGTCTTGGAAATGGA 59.586 40.000 0.00 0.00 0.00 3.41
2736 2989 6.095440 CGGAATTACTTGTCTTGGAAATGGAT 59.905 38.462 0.00 0.00 0.00 3.41
2737 2990 7.260603 GGAATTACTTGTCTTGGAAATGGATG 58.739 38.462 0.00 0.00 0.00 3.51
2738 2991 7.093771 GGAATTACTTGTCTTGGAAATGGATGT 60.094 37.037 0.00 0.00 0.00 3.06
2739 2992 8.877864 AATTACTTGTCTTGGAAATGGATGTA 57.122 30.769 0.00 0.00 0.00 2.29
2740 2993 9.479549 AATTACTTGTCTTGGAAATGGATGTAT 57.520 29.630 0.00 0.00 0.00 2.29
2741 2994 8.506168 TTACTTGTCTTGGAAATGGATGTATC 57.494 34.615 0.00 0.00 0.00 2.24
2742 2995 6.725364 ACTTGTCTTGGAAATGGATGTATCT 58.275 36.000 0.00 0.00 0.00 1.98
2743 2996 6.600822 ACTTGTCTTGGAAATGGATGTATCTG 59.399 38.462 0.00 0.00 0.00 2.90
2744 2997 5.439721 TGTCTTGGAAATGGATGTATCTGG 58.560 41.667 0.00 0.00 0.00 3.86
2745 2998 5.191522 TGTCTTGGAAATGGATGTATCTGGA 59.808 40.000 0.00 0.00 0.00 3.86
2746 2999 6.122277 GTCTTGGAAATGGATGTATCTGGAA 58.878 40.000 0.00 0.00 0.00 3.53
2747 3000 6.038714 GTCTTGGAAATGGATGTATCTGGAAC 59.961 42.308 0.00 0.00 0.00 3.62
2748 3001 5.715439 TGGAAATGGATGTATCTGGAACT 57.285 39.130 0.00 0.00 0.00 3.01
2749 3002 6.823286 TGGAAATGGATGTATCTGGAACTA 57.177 37.500 0.00 0.00 0.00 2.24
2750 3003 7.206789 TGGAAATGGATGTATCTGGAACTAA 57.793 36.000 0.00 0.00 0.00 2.24
2751 3004 7.638444 TGGAAATGGATGTATCTGGAACTAAA 58.362 34.615 0.00 0.00 0.00 1.85
2752 3005 8.112822 TGGAAATGGATGTATCTGGAACTAAAA 58.887 33.333 0.00 0.00 0.00 1.52
2753 3006 9.136323 GGAAATGGATGTATCTGGAACTAAAAT 57.864 33.333 0.00 0.00 0.00 1.82
2756 3009 8.833231 ATGGATGTATCTGGAACTAAAATACG 57.167 34.615 0.00 0.00 0.00 3.06
2757 3010 7.788026 TGGATGTATCTGGAACTAAAATACGT 58.212 34.615 0.00 0.00 0.00 3.57
2758 3011 7.924412 TGGATGTATCTGGAACTAAAATACGTC 59.076 37.037 0.00 0.00 37.78 4.34
2759 3012 8.142551 GGATGTATCTGGAACTAAAATACGTCT 58.857 37.037 0.00 0.00 38.23 4.18
2762 3015 9.399797 TGTATCTGGAACTAAAATACGTCTAGA 57.600 33.333 0.00 0.00 0.00 2.43
2766 3019 9.399797 TCTGGAACTAAAATACGTCTAGATACA 57.600 33.333 0.00 0.00 0.00 2.29
2769 3022 9.623350 GGAACTAAAATACGTCTAGATACATCC 57.377 37.037 0.00 0.00 0.00 3.51
2776 3029 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
2777 3030 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
2778 3031 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
2779 3032 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
2780 3033 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
2781 3034 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2782 3035 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2783 3036 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2784 3037 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2785 3038 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2786 3039 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2787 3040 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2788 3041 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2789 3042 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2790 3043 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
2791 3044 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
2792 3045 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
2793 3046 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
2794 3047 3.857052 TCTGCGACAAGTAATTCCGAAT 58.143 40.909 0.00 0.00 0.00 3.34
2795 3048 3.616821 TCTGCGACAAGTAATTCCGAATG 59.383 43.478 0.00 0.00 0.00 2.67
2796 3049 2.675844 TGCGACAAGTAATTCCGAATGG 59.324 45.455 0.00 0.00 0.00 3.16
2797 3050 2.933906 GCGACAAGTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
2847 3100 5.635280 CAGAGCTATTCTTTCTCGAACACAA 59.365 40.000 0.00 0.00 32.41 3.33
2985 3555 7.619964 ACCCAATTTAGGTGAAGTTAATACG 57.380 36.000 0.00 0.00 35.85 3.06
3039 3610 1.282157 AGGCAATACAAGTCTCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
3051 3622 8.485578 ACAAGTCTCACCCCAAATTAATTTTA 57.514 30.769 10.77 0.00 0.00 1.52
3247 3818 4.597404 TGCTGCCATTTAATTTGTGTCA 57.403 36.364 0.00 0.00 0.00 3.58
3409 7011 4.943705 TCATGAGCCTTTATGGTGAAACTC 59.056 41.667 0.00 0.00 38.35 3.01
3442 7044 7.141363 GTGCATTGTAATGAACTTTGAACTCT 58.859 34.615 8.70 0.00 41.00 3.24
3448 7050 9.554395 TTGTAATGAACTTTGAACTCTGACATA 57.446 29.630 0.00 0.00 0.00 2.29
3520 7152 6.406692 AGTAATGATATTACTGAGTGCCGT 57.593 37.500 12.11 0.00 34.25 5.68
3561 7197 7.439056 TGAAACTCTTTGCAAATTGAAATCCTC 59.561 33.333 13.23 2.24 0.00 3.71
3577 7213 6.599244 TGAAATCCTCGAAATAACAGCTGATT 59.401 34.615 23.35 13.35 0.00 2.57
3631 7270 7.829725 TGATTTTGCTTACTGCTAATCATGTT 58.170 30.769 11.55 0.00 42.50 2.71
4116 7793 5.107824 GGTGGAACTACGAGAAAACTATCC 58.892 45.833 0.00 0.00 36.74 2.59
4331 8016 6.751514 ACACACTCTTGTAATTTGTTCACA 57.248 33.333 0.00 0.00 33.30 3.58
4401 8086 4.408921 TCATGAAACTACTGAGGGTATGGG 59.591 45.833 0.00 0.00 0.00 4.00
4505 8190 6.787085 ACTTAATAGTATGCGATTTCTGGC 57.213 37.500 0.00 0.00 31.21 4.85
4665 8370 4.646945 GTGAGGTCAAGATGGAGATGACTA 59.353 45.833 5.27 0.00 42.36 2.59
4675 8380 7.479352 AGATGGAGATGACTATTACTGATGG 57.521 40.000 0.00 0.00 0.00 3.51
4785 8490 2.408050 CTGTGCACTTCAGGTCTGTAC 58.592 52.381 19.41 0.00 0.00 2.90
4798 8503 4.150627 CAGGTCTGTACAATGAACGACTTG 59.849 45.833 9.67 8.78 0.00 3.16
4800 8505 4.084537 GGTCTGTACAATGAACGACTTGTG 60.085 45.833 9.67 0.00 36.34 3.33
4897 8607 0.330604 ATCATCACAGGCTGCTTGGT 59.669 50.000 15.89 2.96 0.00 3.67
5356 9203 0.107508 GCAGCATCAGACCCAAGCTA 60.108 55.000 0.00 0.00 33.59 3.32
5393 9240 3.385193 TGAACGTGACACAGATGACAT 57.615 42.857 6.37 0.00 33.08 3.06
5543 9390 3.243367 TGTCTTCATGAAAAGGCAAACGG 60.243 43.478 9.88 0.00 37.90 4.44
5649 9500 1.006832 CCGGTGAAAGCTTGGTATCG 58.993 55.000 0.00 1.38 0.00 2.92
5686 9540 1.349627 GCAACGATGATGCTGTCGG 59.650 57.895 0.00 0.00 41.87 4.79
5688 9542 1.921243 CAACGATGATGCTGTCGGTA 58.079 50.000 0.00 0.00 41.87 4.02
5868 9724 1.891919 TGTTTCACAGAGGCGGCAC 60.892 57.895 13.08 4.59 0.00 5.01
6031 10297 2.165030 GGCTACAGCAGTTGATTTGCAT 59.835 45.455 3.24 0.00 43.92 3.96
6081 10347 8.731605 CGAGCACTATGATTAACTAGAGGATAA 58.268 37.037 0.00 0.00 0.00 1.75
6097 10363 0.950836 ATAACTTGCGTGTTGCTGCA 59.049 45.000 0.00 0.00 46.63 4.41
6104 10370 0.521291 GCGTGTTGCTGCAGGAATTA 59.479 50.000 24.13 13.29 41.73 1.40
6250 10525 6.426646 AATCGGCTAGTTAATCCTGAATCT 57.573 37.500 0.00 0.00 0.00 2.40
6255 10530 6.016192 CGGCTAGTTAATCCTGAATCTGTAGA 60.016 42.308 0.00 0.00 0.00 2.59
6293 10568 6.534475 ACACCTTATCCATCGTGTTAACTA 57.466 37.500 7.22 0.00 36.03 2.24
6295 10570 7.388437 ACACCTTATCCATCGTGTTAACTAAA 58.612 34.615 7.22 0.00 36.03 1.85
6296 10571 8.044908 ACACCTTATCCATCGTGTTAACTAAAT 58.955 33.333 7.22 0.00 36.03 1.40
6297 10572 9.537192 CACCTTATCCATCGTGTTAACTAAATA 57.463 33.333 7.22 0.00 0.00 1.40
6302 10577 7.852971 TCCATCGTGTTAACTAAATAAAGGG 57.147 36.000 7.22 0.00 0.00 3.95
6326 10608 1.555075 GGGAAAGGGAAATTTGGGCTC 59.445 52.381 0.00 0.00 0.00 4.70
6400 10682 1.974236 CCTGTTCCCTCACTTCTCACT 59.026 52.381 0.00 0.00 0.00 3.41
6402 10684 2.896685 CTGTTCCCTCACTTCTCACTCT 59.103 50.000 0.00 0.00 0.00 3.24
6403 10685 2.894126 TGTTCCCTCACTTCTCACTCTC 59.106 50.000 0.00 0.00 0.00 3.20
6404 10686 2.223803 TCCCTCACTTCTCACTCTCC 57.776 55.000 0.00 0.00 0.00 3.71
6405 10687 1.190643 CCCTCACTTCTCACTCTCCC 58.809 60.000 0.00 0.00 0.00 4.30
6406 10688 1.190643 CCTCACTTCTCACTCTCCCC 58.809 60.000 0.00 0.00 0.00 4.81
6407 10689 1.272985 CCTCACTTCTCACTCTCCCCT 60.273 57.143 0.00 0.00 0.00 4.79
6423 10705 1.154434 CCCCTCCCCTCCCATAGTAAT 59.846 57.143 0.00 0.00 0.00 1.89
6432 10714 4.907875 CCCTCCCATAGTAATCCTCTTTGA 59.092 45.833 0.00 0.00 0.00 2.69
6486 10768 3.492353 CGGTGCCATCCCCCAGAT 61.492 66.667 0.00 0.00 34.66 2.90
6499 10781 4.410099 TCCCCCAGATGATGAAAATATGC 58.590 43.478 0.00 0.00 0.00 3.14
6500 10782 3.512724 CCCCCAGATGATGAAAATATGCC 59.487 47.826 0.00 0.00 0.00 4.40
6501 10783 3.512724 CCCCAGATGATGAAAATATGCCC 59.487 47.826 0.00 0.00 0.00 5.36
6502 10784 4.413760 CCCAGATGATGAAAATATGCCCT 58.586 43.478 0.00 0.00 0.00 5.19
6503 10785 5.517122 CCCCAGATGATGAAAATATGCCCTA 60.517 44.000 0.00 0.00 0.00 3.53
6504 10786 5.651139 CCCAGATGATGAAAATATGCCCTAG 59.349 44.000 0.00 0.00 0.00 3.02
6505 10787 6.479006 CCAGATGATGAAAATATGCCCTAGA 58.521 40.000 0.00 0.00 0.00 2.43
6506 10788 6.598457 CCAGATGATGAAAATATGCCCTAGAG 59.402 42.308 0.00 0.00 0.00 2.43
6507 10789 7.392418 CAGATGATGAAAATATGCCCTAGAGA 58.608 38.462 0.00 0.00 0.00 3.10
6508 10790 7.333921 CAGATGATGAAAATATGCCCTAGAGAC 59.666 40.741 0.00 0.00 0.00 3.36
6509 10791 6.499106 TGATGAAAATATGCCCTAGAGACA 57.501 37.500 0.00 0.00 0.00 3.41
6510 10792 6.899089 TGATGAAAATATGCCCTAGAGACAA 58.101 36.000 0.00 0.00 0.00 3.18
6511 10793 7.520798 TGATGAAAATATGCCCTAGAGACAAT 58.479 34.615 0.00 0.00 0.00 2.71
6512 10794 8.659527 TGATGAAAATATGCCCTAGAGACAATA 58.340 33.333 0.00 0.00 0.00 1.90
6513 10795 9.507329 GATGAAAATATGCCCTAGAGACAATAA 57.493 33.333 0.00 0.00 0.00 1.40
6520 10802 7.730364 ATGCCCTAGAGACAATAATAAAACG 57.270 36.000 0.00 0.00 0.00 3.60
6521 10803 6.053005 TGCCCTAGAGACAATAATAAAACGG 58.947 40.000 0.00 0.00 0.00 4.44
6522 10804 6.053650 GCCCTAGAGACAATAATAAAACGGT 58.946 40.000 0.00 0.00 0.00 4.83
6523 10805 6.541278 GCCCTAGAGACAATAATAAAACGGTT 59.459 38.462 0.00 0.00 0.00 4.44
6524 10806 7.712205 GCCCTAGAGACAATAATAAAACGGTTA 59.288 37.037 0.00 0.00 0.00 2.85
6525 10807 9.774413 CCCTAGAGACAATAATAAAACGGTTAT 57.226 33.333 0.00 0.00 0.00 1.89
6584 10866 9.625747 TTATTCATGCTAGAATTGTATTGACCA 57.374 29.630 9.01 0.00 38.97 4.02
6585 10867 7.558161 TTCATGCTAGAATTGTATTGACCAG 57.442 36.000 0.00 0.00 0.00 4.00
6586 10868 6.888105 TCATGCTAGAATTGTATTGACCAGA 58.112 36.000 0.00 0.00 0.00 3.86
6587 10869 7.337938 TCATGCTAGAATTGTATTGACCAGAA 58.662 34.615 0.00 0.00 0.00 3.02
6588 10870 7.828717 TCATGCTAGAATTGTATTGACCAGAAA 59.171 33.333 0.00 0.00 0.00 2.52
6589 10871 7.377766 TGCTAGAATTGTATTGACCAGAAAC 57.622 36.000 0.00 0.00 0.00 2.78
6590 10872 7.168219 TGCTAGAATTGTATTGACCAGAAACT 58.832 34.615 0.00 0.00 0.00 2.66
6591 10873 7.665559 TGCTAGAATTGTATTGACCAGAAACTT 59.334 33.333 0.00 0.00 0.00 2.66
6592 10874 9.162764 GCTAGAATTGTATTGACCAGAAACTTA 57.837 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.356382 ACGTGCGAGGAATTGTTGAAAA 59.644 40.909 0.00 0.00 0.00 2.29
33 34 1.071605 CTAAAGGAGTCTGCACGTGC 58.928 55.000 33.11 33.11 42.50 5.34
77 78 5.407407 AGTTGAAGATCAATACTCCACGT 57.593 39.130 0.00 0.00 38.79 4.49
79 80 7.064016 GTCTCAAGTTGAAGATCAATACTCCAC 59.936 40.741 7.06 0.00 38.79 4.02
80 81 7.099764 GTCTCAAGTTGAAGATCAATACTCCA 58.900 38.462 7.06 0.00 38.79 3.86
81 82 6.536941 GGTCTCAAGTTGAAGATCAATACTCC 59.463 42.308 7.06 0.00 38.79 3.85
82 83 7.327214 AGGTCTCAAGTTGAAGATCAATACTC 58.673 38.462 7.06 0.00 38.79 2.59
84 85 6.536941 GGAGGTCTCAAGTTGAAGATCAATAC 59.463 42.308 7.06 1.99 38.79 1.89
95 102 1.876156 GTGCAAGGAGGTCTCAAGTTG 59.124 52.381 0.00 0.00 0.00 3.16
100 107 1.649321 ATCAGTGCAAGGAGGTCTCA 58.351 50.000 0.00 0.00 0.00 3.27
103 110 3.334583 TTGTATCAGTGCAAGGAGGTC 57.665 47.619 0.00 0.00 0.00 3.85
144 151 1.287442 TGGCTCCTTGGCATTATTGGA 59.713 47.619 0.00 0.00 46.76 3.53
145 152 1.779221 TGGCTCCTTGGCATTATTGG 58.221 50.000 0.00 0.00 46.76 3.16
168 224 5.465390 TCTTGTGAGGAAAACATGTTAGTCG 59.535 40.000 12.39 0.00 0.00 4.18
255 311 8.545420 CCTTAATTTGATTAATGAAGCATGTGC 58.455 33.333 0.00 0.00 34.49 4.57
468 532 4.766375 AGTAATGAGTTGGTAATCCACGG 58.234 43.478 0.00 0.00 44.22 4.94
469 533 4.809426 GGAGTAATGAGTTGGTAATCCACG 59.191 45.833 0.00 0.00 44.22 4.94
540 604 3.090532 GTGGAGGCGGGGGAGAAT 61.091 66.667 0.00 0.00 0.00 2.40
567 631 3.647771 GGCCGTGGAAAGAGGGGT 61.648 66.667 0.00 0.00 0.00 4.95
597 661 2.223157 CGGCATTACGGGTTATGTGTTG 60.223 50.000 0.54 0.00 0.00 3.33
598 662 2.011222 CGGCATTACGGGTTATGTGTT 58.989 47.619 0.54 0.00 0.00 3.32
599 663 1.065998 ACGGCATTACGGGTTATGTGT 60.066 47.619 0.54 0.00 38.39 3.72
630 695 2.561549 TACCCCGTTCGTTCGCCATC 62.562 60.000 0.00 0.00 0.00 3.51
804 873 2.041405 GTGGGGGAGGAGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
805 874 2.540910 AGTGGGGGAGGAGGAGGA 60.541 66.667 0.00 0.00 0.00 3.71
810 879 2.041405 GAGGGAGTGGGGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
823 892 0.842467 AGGAGTGGGAAGTTGGAGGG 60.842 60.000 0.00 0.00 0.00 4.30
846 915 3.279116 GCTTGTGCGTGCCTGACA 61.279 61.111 0.00 0.00 0.00 3.58
847 916 4.030452 GGCTTGTGCGTGCCTGAC 62.030 66.667 0.00 0.00 45.26 3.51
870 939 1.067669 CAGGCTAGCTAATCACGAGCA 59.932 52.381 15.72 0.00 42.69 4.26
934 1018 2.036475 GAGAAGAGACCAACAGCACAGA 59.964 50.000 0.00 0.00 0.00 3.41
1525 1675 8.836413 ACAACAGATTCAAGTCGATTCTTAAAA 58.164 29.630 0.00 0.00 33.09 1.52
1549 1705 2.564947 ACACAACAAGCTTGGGAAAACA 59.435 40.909 29.18 0.00 0.00 2.83
1555 1744 4.819630 TCTTACTTACACAACAAGCTTGGG 59.180 41.667 29.18 22.16 0.00 4.12
1615 1815 4.324402 GCCACGTTGAAATTCATGATTGAC 59.676 41.667 0.00 0.00 0.00 3.18
1619 1849 2.731968 GCGCCACGTTGAAATTCATGAT 60.732 45.455 0.00 0.00 0.00 2.45
1758 1988 1.000506 AGTTCGCCGAAGAAAGTGCTA 59.999 47.619 0.00 0.00 0.00 3.49
1770 2000 2.748461 TCTTTTTGACAAGTTCGCCG 57.252 45.000 0.00 0.00 0.00 6.46
1865 2099 3.582208 ACTGCTGCAATTTTAATCCCCAA 59.418 39.130 3.02 0.00 0.00 4.12
1978 2212 3.939592 GTGCAGTACCAATTCCTAAGGTC 59.060 47.826 0.00 0.00 36.87 3.85
2004 2238 2.951229 AAAGGTGAGTTCCCAATCGT 57.049 45.000 0.00 0.00 0.00 3.73
2050 2284 2.923121 TGATTGCTAACTCTGGGCATC 58.077 47.619 0.00 0.00 35.84 3.91
2071 2305 6.206634 CCCGTTATATAGAAAATGCACCATGT 59.793 38.462 0.00 0.00 0.00 3.21
2093 2327 3.848726 ACTGCTGCAATTTTAATTCCCG 58.151 40.909 3.02 0.00 0.00 5.14
2181 2415 2.101415 GGCACTTATTTTGGGATGGAGC 59.899 50.000 0.00 0.00 0.00 4.70
2213 2447 5.860182 GTCGCTGATGTAGTACAACTTTGTA 59.140 40.000 7.16 0.00 42.35 2.41
2214 2448 4.684703 GTCGCTGATGTAGTACAACTTTGT 59.315 41.667 7.16 0.00 44.86 2.83
2215 2449 4.684242 TGTCGCTGATGTAGTACAACTTTG 59.316 41.667 7.16 1.50 0.00 2.77
2216 2450 4.684703 GTGTCGCTGATGTAGTACAACTTT 59.315 41.667 7.16 0.00 0.00 2.66
2218 2452 3.506455 AGTGTCGCTGATGTAGTACAACT 59.494 43.478 7.16 0.66 0.00 3.16
2219 2453 3.834610 AGTGTCGCTGATGTAGTACAAC 58.165 45.455 7.16 5.27 0.00 3.32
2251 2485 5.191426 TCGGATAATCTAATACTCCCTCCG 58.809 45.833 0.00 0.00 43.29 4.63
2305 2539 3.519973 CTGTGCAGTGCCGACTCCA 62.520 63.158 13.72 0.00 0.00 3.86
2312 2546 2.086869 ACAATCATACTGTGCAGTGCC 58.913 47.619 13.72 4.57 42.52 5.01
2326 2560 8.792633 CAAAGAGTTAAAGGGTATTCACAATCA 58.207 33.333 0.00 0.00 0.00 2.57
2383 2617 5.997384 ATTTACCCGAAGACTAACTGAGT 57.003 39.130 0.00 0.00 42.90 3.41
2662 2915 9.887406 GACAACGAAATAACTTCAATTAAAGGA 57.113 29.630 0.00 0.00 33.17 3.36
2690 2943 3.003482 CGAACGGAGGGAGTAGTTATGAG 59.997 52.174 0.00 0.00 0.00 2.90
2693 2946 2.092212 TCCGAACGGAGGGAGTAGTTAT 60.092 50.000 12.04 0.00 39.76 1.89
2698 2951 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2699 2952 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2700 2953 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2701 2954 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2702 2955 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2703 2956 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2704 2957 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2705 2958 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
2706 2959 3.124636 CCAAGACAAGTAATTCCGAACGG 59.875 47.826 6.94 6.94 0.00 4.44
2707 2960 3.991773 TCCAAGACAAGTAATTCCGAACG 59.008 43.478 0.00 0.00 0.00 3.95
2708 2961 5.934935 TTCCAAGACAAGTAATTCCGAAC 57.065 39.130 0.00 0.00 0.00 3.95
2709 2962 6.072175 CCATTTCCAAGACAAGTAATTCCGAA 60.072 38.462 0.00 0.00 0.00 4.30
2710 2963 5.414454 CCATTTCCAAGACAAGTAATTCCGA 59.586 40.000 0.00 0.00 0.00 4.55
2711 2964 5.414454 TCCATTTCCAAGACAAGTAATTCCG 59.586 40.000 0.00 0.00 0.00 4.30
2712 2965 6.834168 TCCATTTCCAAGACAAGTAATTCC 57.166 37.500 0.00 0.00 0.00 3.01
2713 2966 7.830739 ACATCCATTTCCAAGACAAGTAATTC 58.169 34.615 0.00 0.00 0.00 2.17
2714 2967 7.781324 ACATCCATTTCCAAGACAAGTAATT 57.219 32.000 0.00 0.00 0.00 1.40
2715 2968 9.125026 GATACATCCATTTCCAAGACAAGTAAT 57.875 33.333 0.00 0.00 0.00 1.89
2716 2969 8.328758 AGATACATCCATTTCCAAGACAAGTAA 58.671 33.333 0.00 0.00 0.00 2.24
2717 2970 7.770433 CAGATACATCCATTTCCAAGACAAGTA 59.230 37.037 0.00 0.00 0.00 2.24
2718 2971 6.600822 CAGATACATCCATTTCCAAGACAAGT 59.399 38.462 0.00 0.00 0.00 3.16
2719 2972 6.039047 CCAGATACATCCATTTCCAAGACAAG 59.961 42.308 0.00 0.00 0.00 3.16
2720 2973 5.887598 CCAGATACATCCATTTCCAAGACAA 59.112 40.000 0.00 0.00 0.00 3.18
2721 2974 5.191522 TCCAGATACATCCATTTCCAAGACA 59.808 40.000 0.00 0.00 0.00 3.41
2722 2975 5.684704 TCCAGATACATCCATTTCCAAGAC 58.315 41.667 0.00 0.00 0.00 3.01
2723 2976 5.974156 TCCAGATACATCCATTTCCAAGA 57.026 39.130 0.00 0.00 0.00 3.02
2724 2977 6.125029 AGTTCCAGATACATCCATTTCCAAG 58.875 40.000 0.00 0.00 0.00 3.61
2725 2978 6.078456 AGTTCCAGATACATCCATTTCCAA 57.922 37.500 0.00 0.00 0.00 3.53
2726 2979 5.715439 AGTTCCAGATACATCCATTTCCA 57.285 39.130 0.00 0.00 0.00 3.53
2727 2980 8.519799 TTTTAGTTCCAGATACATCCATTTCC 57.480 34.615 0.00 0.00 0.00 3.13
2730 2983 9.273016 CGTATTTTAGTTCCAGATACATCCATT 57.727 33.333 0.00 0.00 0.00 3.16
2731 2984 8.429641 ACGTATTTTAGTTCCAGATACATCCAT 58.570 33.333 0.00 0.00 0.00 3.41
2732 2985 7.788026 ACGTATTTTAGTTCCAGATACATCCA 58.212 34.615 0.00 0.00 0.00 3.41
2733 2986 8.142551 AGACGTATTTTAGTTCCAGATACATCC 58.857 37.037 0.00 0.00 0.00 3.51
2736 2989 9.399797 TCTAGACGTATTTTAGTTCCAGATACA 57.600 33.333 0.00 0.00 0.00 2.29
2740 2993 9.399797 TGTATCTAGACGTATTTTAGTTCCAGA 57.600 33.333 0.00 0.00 0.00 3.86
2743 2996 9.623350 GGATGTATCTAGACGTATTTTAGTTCC 57.377 37.037 0.00 0.00 0.00 3.62
2750 3003 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
2751 3004 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
2752 3005 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
2753 3006 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
2754 3007 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
2755 3008 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
2756 3009 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
2757 3010 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2758 3011 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2759 3012 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2760 3013 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2761 3014 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2762 3015 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2763 3016 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2764 3017 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2765 3018 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2766 3019 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
2767 3020 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
2768 3021 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
2769 3022 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2770 3023 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2771 3024 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2772 3025 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2773 3026 3.306917 TTCGGAATTACTTGTCGCAGA 57.693 42.857 0.00 0.00 0.00 4.26
2774 3027 3.242413 CCATTCGGAATTACTTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
2775 3028 2.675844 CCATTCGGAATTACTTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
2776 3029 2.933906 TCCATTCGGAATTACTTGTCGC 59.066 45.455 0.00 0.00 38.83 5.19
2777 3030 3.555956 CCTCCATTCGGAATTACTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
2778 3031 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
2779 3032 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
2780 3033 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
2781 3034 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
2782 3035 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
2783 3036 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
2784 3037 4.291792 TGTACTCCCTCCATTCGGAATTA 58.708 43.478 0.00 0.00 42.21 1.40
2785 3038 3.112263 TGTACTCCCTCCATTCGGAATT 58.888 45.455 0.00 0.00 42.21 2.17
2786 3039 2.759355 TGTACTCCCTCCATTCGGAAT 58.241 47.619 0.00 0.00 42.21 3.01
2787 3040 2.241281 TGTACTCCCTCCATTCGGAA 57.759 50.000 0.00 0.00 42.21 4.30
2788 3041 2.241281 TTGTACTCCCTCCATTCGGA 57.759 50.000 0.00 0.00 39.79 4.55
2789 3042 3.560636 AATTGTACTCCCTCCATTCGG 57.439 47.619 0.00 0.00 0.00 4.30
2790 3043 6.398918 CCTATAATTGTACTCCCTCCATTCG 58.601 44.000 0.00 0.00 0.00 3.34
2791 3044 6.013293 AGCCTATAATTGTACTCCCTCCATTC 60.013 42.308 0.00 0.00 0.00 2.67
2792 3045 5.852250 AGCCTATAATTGTACTCCCTCCATT 59.148 40.000 0.00 0.00 0.00 3.16
2793 3046 5.415961 AGCCTATAATTGTACTCCCTCCAT 58.584 41.667 0.00 0.00 0.00 3.41
2794 3047 4.827789 AGCCTATAATTGTACTCCCTCCA 58.172 43.478 0.00 0.00 0.00 3.86
2795 3048 6.898521 AGATAGCCTATAATTGTACTCCCTCC 59.101 42.308 0.00 0.00 0.00 4.30
2796 3049 7.616150 TGAGATAGCCTATAATTGTACTCCCTC 59.384 40.741 0.00 0.00 0.00 4.30
2797 3050 7.397761 GTGAGATAGCCTATAATTGTACTCCCT 59.602 40.741 0.00 0.00 0.00 4.20
2798 3051 7.178628 TGTGAGATAGCCTATAATTGTACTCCC 59.821 40.741 0.00 0.00 0.00 4.30
2799 3052 8.123639 TGTGAGATAGCCTATAATTGTACTCC 57.876 38.462 0.00 0.00 0.00 3.85
2800 3053 9.015367 TCTGTGAGATAGCCTATAATTGTACTC 57.985 37.037 0.00 0.00 0.00 2.59
2801 3054 8.941995 TCTGTGAGATAGCCTATAATTGTACT 57.058 34.615 0.00 0.00 0.00 2.73
2802 3055 7.757624 GCTCTGTGAGATAGCCTATAATTGTAC 59.242 40.741 0.00 0.00 0.00 2.90
2847 3100 7.335422 GCAATATTCCAGCATAGCTATGTAAGT 59.665 37.037 29.62 16.02 36.40 2.24
3051 3622 8.862325 TGGTATTAGATGGCGATTTATTTCAT 57.138 30.769 0.00 0.00 0.00 2.57
3057 3628 5.874810 GCTGATGGTATTAGATGGCGATTTA 59.125 40.000 0.00 0.00 0.00 1.40
3188 3759 9.448438 AATGTGTTGTTATTTAGCTACTCATGA 57.552 29.630 0.00 0.00 31.40 3.07
3247 3818 7.470009 GCGGATTTCCTAAATTACACCATCATT 60.470 37.037 0.00 0.00 0.00 2.57
3409 7011 4.690184 TCATTACAATGCACTGCTCTTG 57.310 40.909 0.00 12.59 36.36 3.02
3442 7044 4.766373 ACAATTCACAAGCACCATATGTCA 59.234 37.500 1.24 0.00 0.00 3.58
3448 7050 6.830324 ACTATATCACAATTCACAAGCACCAT 59.170 34.615 0.00 0.00 0.00 3.55
3519 7151 2.796593 GTTTCAAGTTGCTCAATGGCAC 59.203 45.455 0.00 0.00 42.27 5.01
3520 7152 2.694628 AGTTTCAAGTTGCTCAATGGCA 59.305 40.909 0.00 0.00 40.74 4.92
3561 7197 8.562892 AGGAATTGATAATCAGCTGTTATTTCG 58.437 33.333 14.67 0.00 0.00 3.46
3631 7270 0.179234 TCAGGTTGTTCCGCTCACAA 59.821 50.000 0.00 0.00 41.99 3.33
4116 7793 7.431249 TGTATATTCTTAGTTGCTTACCCTCG 58.569 38.462 0.00 0.00 0.00 4.63
4401 8086 7.843490 TTAGCTGTAACCACATCTTAACATC 57.157 36.000 0.00 0.00 33.33 3.06
4505 8190 2.126882 TCACATAGATCAGGTTGGGGG 58.873 52.381 0.00 0.00 0.00 5.40
4665 8370 8.608185 ATTGATTTTTGGTACCCATCAGTAAT 57.392 30.769 10.07 0.54 31.53 1.89
4675 8380 5.413523 AGTGTCCGTATTGATTTTTGGTACC 59.586 40.000 4.43 4.43 0.00 3.34
4694 8399 5.627499 TGTGAAGCCAATTGAATAGTGTC 57.373 39.130 7.12 0.00 0.00 3.67
4785 8490 2.032894 AGCGTTCACAAGTCGTTCATTG 60.033 45.455 0.00 0.00 0.00 2.82
4798 8503 2.061740 AAGGAAGACGTAGCGTTCAC 57.938 50.000 0.00 0.00 41.37 3.18
4800 8505 5.119743 ACATAAAAAGGAAGACGTAGCGTTC 59.880 40.000 0.00 0.00 41.37 3.95
4852 8562 1.204704 GGGGCCTTGAAACATAAGCAC 59.795 52.381 0.84 0.00 0.00 4.40
4897 8607 8.690884 TCTGACTCCAAAATTTATTGTGTCAAA 58.309 29.630 14.73 5.45 39.27 2.69
4948 8658 7.725251 TGGTGAAGTGAAATTCATAAAGCTTT 58.275 30.769 17.30 17.30 41.05 3.51
5356 9203 4.407945 ACGTTCAATATAGCTAACCCAGGT 59.592 41.667 0.00 0.00 38.84 4.00
5393 9240 2.143122 GTGACCATCTTTTCGCTGTGA 58.857 47.619 0.00 0.00 0.00 3.58
5543 9390 5.712152 AGAGAAACATTTTGGTCCATCAC 57.288 39.130 0.00 0.00 0.00 3.06
5649 9500 0.528470 CAGGAGACTCACGAACCCTC 59.472 60.000 4.53 0.00 40.21 4.30
5686 9540 3.494573 GGCTACCTAAGTGGGAAGCATAC 60.495 52.174 11.48 0.00 45.32 2.39
5688 9542 1.490910 GGCTACCTAAGTGGGAAGCAT 59.509 52.381 11.48 0.00 45.32 3.79
5868 9724 3.261580 TGATCACATCGGCTAACACTTG 58.738 45.455 0.00 0.00 0.00 3.16
6031 10297 2.381911 AGGGATAGAAACGCCGAACTA 58.618 47.619 0.00 0.00 0.00 2.24
6086 10352 1.806542 ACTAATTCCTGCAGCAACACG 59.193 47.619 8.66 0.00 0.00 4.49
6250 10525 3.386402 TGTAATGGCATCCGTGATCTACA 59.614 43.478 0.00 0.04 0.00 2.74
6255 10530 1.490490 AGGTGTAATGGCATCCGTGAT 59.510 47.619 0.00 0.00 0.00 3.06
6266 10541 7.494625 AGTTAACACGATGGATAAGGTGTAATG 59.505 37.037 8.61 0.00 42.35 1.90
6293 10568 5.363124 TCCCTTTCCCTTTCCCTTTATTT 57.637 39.130 0.00 0.00 0.00 1.40
6295 10570 5.363124 TTTCCCTTTCCCTTTCCCTTTAT 57.637 39.130 0.00 0.00 0.00 1.40
6296 10571 4.836255 TTTCCCTTTCCCTTTCCCTTTA 57.164 40.909 0.00 0.00 0.00 1.85
6297 10572 3.717507 TTTCCCTTTCCCTTTCCCTTT 57.282 42.857 0.00 0.00 0.00 3.11
6298 10573 3.943269 ATTTCCCTTTCCCTTTCCCTT 57.057 42.857 0.00 0.00 0.00 3.95
6299 10574 3.909995 CAAATTTCCCTTTCCCTTTCCCT 59.090 43.478 0.00 0.00 0.00 4.20
6300 10575 3.009033 CCAAATTTCCCTTTCCCTTTCCC 59.991 47.826 0.00 0.00 0.00 3.97
6301 10576 3.009033 CCCAAATTTCCCTTTCCCTTTCC 59.991 47.826 0.00 0.00 0.00 3.13
6302 10577 3.559171 GCCCAAATTTCCCTTTCCCTTTC 60.559 47.826 0.00 0.00 0.00 2.62
6382 10664 2.894126 GAGAGTGAGAAGTGAGGGAACA 59.106 50.000 0.00 0.00 0.00 3.18
6400 10682 1.311464 TATGGGAGGGGAGGGGAGA 60.311 63.158 0.00 0.00 0.00 3.71
6402 10684 0.331137 TACTATGGGAGGGGAGGGGA 60.331 60.000 0.00 0.00 0.00 4.81
6403 10685 0.571236 TTACTATGGGAGGGGAGGGG 59.429 60.000 0.00 0.00 0.00 4.79
6404 10686 2.552367 GATTACTATGGGAGGGGAGGG 58.448 57.143 0.00 0.00 0.00 4.30
6405 10687 2.114506 AGGATTACTATGGGAGGGGAGG 59.885 54.545 0.00 0.00 0.00 4.30
6406 10688 3.078305 AGAGGATTACTATGGGAGGGGAG 59.922 52.174 0.00 0.00 0.00 4.30
6407 10689 3.079854 AGAGGATTACTATGGGAGGGGA 58.920 50.000 0.00 0.00 0.00 4.81
6469 10751 3.492353 ATCTGGGGGATGGCACCG 61.492 66.667 0.00 0.00 39.04 4.94
6470 10752 2.196776 CATCTGGGGGATGGCACC 59.803 66.667 0.00 0.00 45.85 5.01
6476 10758 5.021458 GCATATTTTCATCATCTGGGGGAT 58.979 41.667 0.00 0.00 34.51 3.85
6477 10759 4.410099 GCATATTTTCATCATCTGGGGGA 58.590 43.478 0.00 0.00 0.00 4.81
6478 10760 3.512724 GGCATATTTTCATCATCTGGGGG 59.487 47.826 0.00 0.00 0.00 5.40
6479 10761 3.512724 GGGCATATTTTCATCATCTGGGG 59.487 47.826 0.00 0.00 0.00 4.96
6480 10762 4.413760 AGGGCATATTTTCATCATCTGGG 58.586 43.478 0.00 0.00 0.00 4.45
6481 10763 6.479006 TCTAGGGCATATTTTCATCATCTGG 58.521 40.000 0.00 0.00 0.00 3.86
6482 10764 7.333921 GTCTCTAGGGCATATTTTCATCATCTG 59.666 40.741 0.00 0.00 0.00 2.90
6483 10765 7.016957 TGTCTCTAGGGCATATTTTCATCATCT 59.983 37.037 0.00 0.00 0.00 2.90
6484 10766 7.164122 TGTCTCTAGGGCATATTTTCATCATC 58.836 38.462 0.00 0.00 0.00 2.92
6485 10767 7.083062 TGTCTCTAGGGCATATTTTCATCAT 57.917 36.000 0.00 0.00 0.00 2.45
6486 10768 6.499106 TGTCTCTAGGGCATATTTTCATCA 57.501 37.500 0.00 0.00 0.00 3.07
6487 10769 7.992754 ATTGTCTCTAGGGCATATTTTCATC 57.007 36.000 0.00 0.00 0.00 2.92
6494 10776 9.436957 CGTTTTATTATTGTCTCTAGGGCATAT 57.563 33.333 0.00 0.00 0.00 1.78
6495 10777 7.876068 CCGTTTTATTATTGTCTCTAGGGCATA 59.124 37.037 0.00 0.00 0.00 3.14
6496 10778 6.710744 CCGTTTTATTATTGTCTCTAGGGCAT 59.289 38.462 0.00 0.00 0.00 4.40
6497 10779 6.053005 CCGTTTTATTATTGTCTCTAGGGCA 58.947 40.000 0.00 0.00 0.00 5.36
6498 10780 6.053650 ACCGTTTTATTATTGTCTCTAGGGC 58.946 40.000 0.00 0.00 0.00 5.19
6499 10781 9.774413 ATAACCGTTTTATTATTGTCTCTAGGG 57.226 33.333 0.00 0.00 0.00 3.53
6558 10840 9.625747 TGGTCAATACAATTCTAGCATGAATAA 57.374 29.630 0.00 0.00 35.82 1.40
6559 10841 9.276590 CTGGTCAATACAATTCTAGCATGAATA 57.723 33.333 0.00 0.00 35.82 1.75
6560 10842 7.994911 TCTGGTCAATACAATTCTAGCATGAAT 59.005 33.333 0.00 0.00 38.19 2.57
6561 10843 7.337938 TCTGGTCAATACAATTCTAGCATGAA 58.662 34.615 0.00 0.00 0.00 2.57
6562 10844 6.888105 TCTGGTCAATACAATTCTAGCATGA 58.112 36.000 0.00 0.00 0.00 3.07
6563 10845 7.558161 TTCTGGTCAATACAATTCTAGCATG 57.442 36.000 0.00 0.00 0.00 4.06
6564 10846 7.831193 AGTTTCTGGTCAATACAATTCTAGCAT 59.169 33.333 0.00 0.00 0.00 3.79
6565 10847 7.168219 AGTTTCTGGTCAATACAATTCTAGCA 58.832 34.615 0.00 0.00 0.00 3.49
6566 10848 7.617041 AGTTTCTGGTCAATACAATTCTAGC 57.383 36.000 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.