Multiple sequence alignment - TraesCS5A01G132900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G132900 chr5A 100.000 2222 0 0 1 2222 299505518 299503297 0.000000e+00 4104.0
1 TraesCS5A01G132900 chr5A 90.058 171 17 0 355 525 342235834 342235664 2.870000e-54 222.0
2 TraesCS5A01G132900 chr5A 100.000 32 0 0 1 32 448408290 448408321 2.380000e-05 60.2
3 TraesCS5A01G132900 chr5D 96.095 1306 44 7 892 2194 224944118 224942817 0.000000e+00 2122.0
4 TraesCS5A01G132900 chr5D 86.242 298 41 0 44 341 458663018 458662721 7.650000e-85 324.0
5 TraesCS5A01G132900 chr5D 85.174 317 42 4 26 338 375455712 375456027 9.900000e-84 320.0
6 TraesCS5A01G132900 chr5D 86.879 282 31 4 523 801 320755245 320755523 5.960000e-81 311.0
7 TraesCS5A01G132900 chr5D 100.000 32 0 0 1 32 316620338 316620369 2.380000e-05 60.2
8 TraesCS5A01G132900 chr5D 100.000 32 0 0 1 32 456250530 456250499 2.380000e-05 60.2
9 TraesCS5A01G132900 chr5B 95.157 702 22 6 892 1581 246180907 246181608 0.000000e+00 1098.0
10 TraesCS5A01G132900 chr5B 95.393 521 23 1 1614 2134 246181609 246182128 0.000000e+00 828.0
11 TraesCS5A01G132900 chr5B 85.304 313 41 5 26 335 680314647 680314957 3.560000e-83 318.0
12 TraesCS5A01G132900 chr5B 90.643 171 16 0 355 525 173343460 173343290 6.170000e-56 228.0
13 TraesCS5A01G132900 chr5B 90.643 171 16 0 355 525 290707513 290707683 6.170000e-56 228.0
14 TraesCS5A01G132900 chr5B 78.125 288 40 9 84 360 411820606 411820331 6.350000e-36 161.0
15 TraesCS5A01G132900 chr6D 87.135 342 37 4 26 362 292077577 292077238 4.480000e-102 381.0
16 TraesCS5A01G132900 chr6D 86.769 325 41 2 32 355 444704432 444704109 5.830000e-96 361.0
17 TraesCS5A01G132900 chr6D 86.942 291 31 6 529 815 398840939 398840652 9.900000e-84 320.0
18 TraesCS5A01G132900 chr6D 89.474 171 18 0 355 525 199208839 199208669 1.340000e-52 217.0
19 TraesCS5A01G132900 chr6D 97.143 35 0 1 1 34 245066180 245066146 8.570000e-05 58.4
20 TraesCS5A01G132900 chr2D 88.179 313 37 0 26 338 144309065 144309377 7.490000e-100 374.0
21 TraesCS5A01G132900 chr2D 85.902 305 37 6 26 329 47008520 47008819 9.900000e-84 320.0
22 TraesCS5A01G132900 chr4D 96.018 226 9 0 997 1222 112724290 112724515 3.490000e-98 368.0
23 TraesCS5A01G132900 chr4D 85.424 295 39 2 523 815 87795965 87796257 9.970000e-79 303.0
24 TraesCS5A01G132900 chr4D 100.000 32 0 0 1 32 103309083 103309052 2.380000e-05 60.2
25 TraesCS5A01G132900 chr4A 96.018 226 9 0 997 1222 464696966 464696741 3.490000e-98 368.0
26 TraesCS5A01G132900 chr4A 76.023 171 28 4 202 360 503325466 503325635 2.370000e-10 76.8
27 TraesCS5A01G132900 chr4A 100.000 29 0 0 331 359 622091760 622091732 1.000000e-03 54.7
28 TraesCS5A01G132900 chr4B 95.575 226 10 0 997 1222 173174311 173174536 1.620000e-96 363.0
29 TraesCS5A01G132900 chr3B 88.502 287 30 3 1631 1915 107971281 107970996 5.870000e-91 344.0
30 TraesCS5A01G132900 chr3B 96.970 33 0 1 326 357 581076748 581076716 1.000000e-03 54.7
31 TraesCS5A01G132900 chr7A 86.032 315 38 6 26 337 394878313 394878002 1.270000e-87 333.0
32 TraesCS5A01G132900 chr7A 87.368 285 34 2 1623 1906 275228644 275228927 2.130000e-85 326.0
33 TraesCS5A01G132900 chr7A 87.413 286 33 2 1623 1906 275268810 275269094 2.130000e-85 326.0
34 TraesCS5A01G132900 chr7A 90.449 178 16 1 1736 1912 695939612 695939789 1.330000e-57 233.0
35 TraesCS5A01G132900 chr7A 100.000 32 0 0 1 32 295979383 295979352 2.380000e-05 60.2
36 TraesCS5A01G132900 chr7D 87.372 293 32 3 526 816 85937371 85937082 4.570000e-87 331.0
37 TraesCS5A01G132900 chr7D 85.185 297 37 5 523 815 418139625 418139918 4.640000e-77 298.0
38 TraesCS5A01G132900 chr7D 90.058 171 17 0 355 525 475875417 475875587 2.870000e-54 222.0
39 TraesCS5A01G132900 chr7D 100.000 32 0 0 1 32 212280332 212280301 2.380000e-05 60.2
40 TraesCS5A01G132900 chr7B 86.913 298 35 3 1612 1906 586965265 586965561 4.570000e-87 331.0
41 TraesCS5A01G132900 chr7B 84.083 289 30 7 1626 1912 612321570 612321844 4.700000e-67 265.0
42 TraesCS5A01G132900 chr7B 80.251 319 44 12 55 359 27592164 27592477 2.870000e-54 222.0
43 TraesCS5A01G132900 chr1B 85.397 315 43 3 26 338 473023031 473023344 7.650000e-85 324.0
44 TraesCS5A01G132900 chr1B 80.793 328 41 9 46 363 304789887 304790202 1.030000e-58 237.0
45 TraesCS5A01G132900 chr1B 88.776 98 10 1 1816 1912 41835249 41835346 3.880000e-23 119.0
46 TraesCS5A01G132900 chr1B 88.136 59 7 0 1623 1681 41823210 41823268 1.100000e-08 71.3
47 TraesCS5A01G132900 chr3D 85.906 298 37 4 522 816 484052691 484052986 1.660000e-81 313.0
48 TraesCS5A01G132900 chr3D 84.718 301 40 4 517 815 338169432 338169728 1.670000e-76 296.0
49 TraesCS5A01G132900 chr3D 90.058 171 17 0 355 525 496684537 496684707 2.870000e-54 222.0
50 TraesCS5A01G132900 chr3D 100.000 29 0 0 1 29 313041714 313041742 1.000000e-03 54.7
51 TraesCS5A01G132900 chr2A 85.619 299 36 6 521 815 439398768 439399063 7.710000e-80 307.0
52 TraesCS5A01G132900 chr2B 85.223 291 38 5 529 816 222591021 222590733 6.000000e-76 294.0
53 TraesCS5A01G132900 chr1D 85.467 289 35 7 1626 1912 248979839 248980122 6.000000e-76 294.0
54 TraesCS5A01G132900 chr1D 90.643 171 16 0 355 525 107397661 107397491 6.170000e-56 228.0
55 TraesCS5A01G132900 chr1D 82.239 259 21 12 1651 1907 248970903 248970668 1.350000e-47 200.0
56 TraesCS5A01G132900 chr1A 90.643 171 16 0 355 525 356615206 356615036 6.170000e-56 228.0
57 TraesCS5A01G132900 chrUn 89.474 171 18 0 355 525 129542071 129541901 1.340000e-52 217.0
58 TraesCS5A01G132900 chr3A 100.000 32 0 0 1 32 398689170 398689201 2.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G132900 chr5A 299503297 299505518 2221 True 4104 4104 100.000 1 2222 1 chr5A.!!$R1 2221
1 TraesCS5A01G132900 chr5D 224942817 224944118 1301 True 2122 2122 96.095 892 2194 1 chr5D.!!$R1 1302
2 TraesCS5A01G132900 chr5B 246180907 246182128 1221 False 963 1098 95.275 892 2134 2 chr5B.!!$F3 1242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 854 0.040425 AGTTTAGGCGCTTGCGTTTG 60.04 50.0 16.38 0.0 40.46 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 1801 1.001815 GGCGCTTCAGTTGCTTTAACA 60.002 47.619 7.64 0.0 41.88 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.713867 GACCCCTTAGTCCAGGACT 57.286 57.895 25.92 25.92 45.54 3.85
19 20 1.487300 GACCCCTTAGTCCAGGACTC 58.513 60.000 26.42 6.18 42.40 3.36
20 21 0.042881 ACCCCTTAGTCCAGGACTCC 59.957 60.000 26.42 0.00 42.40 3.85
21 22 0.691413 CCCCTTAGTCCAGGACTCCC 60.691 65.000 26.42 0.00 42.40 4.30
22 23 0.340208 CCCTTAGTCCAGGACTCCCT 59.660 60.000 26.42 4.72 42.40 4.20
23 24 1.689892 CCCTTAGTCCAGGACTCCCTC 60.690 61.905 26.42 0.00 42.40 4.30
24 25 1.007238 CCTTAGTCCAGGACTCCCTCA 59.993 57.143 26.42 5.02 42.40 3.86
25 26 2.559931 CCTTAGTCCAGGACTCCCTCAA 60.560 54.545 26.42 13.05 42.40 3.02
26 27 2.534042 TAGTCCAGGACTCCCTCAAG 57.466 55.000 26.42 0.00 42.40 3.02
27 28 0.252467 AGTCCAGGACTCCCTCAAGG 60.252 60.000 17.31 0.00 38.71 3.61
62 63 3.204827 GCGCCGCATGTGAGGAAT 61.205 61.111 3.15 0.00 37.14 3.01
63 64 3.017323 CGCCGCATGTGAGGAATC 58.983 61.111 8.11 0.00 37.14 2.52
64 65 1.815003 CGCCGCATGTGAGGAATCA 60.815 57.895 8.11 0.00 37.14 2.57
65 66 1.368345 CGCCGCATGTGAGGAATCAA 61.368 55.000 8.11 0.00 37.14 2.57
66 67 1.027357 GCCGCATGTGAGGAATCAAT 58.973 50.000 8.11 0.00 37.14 2.57
67 68 1.268896 GCCGCATGTGAGGAATCAATG 60.269 52.381 8.11 0.00 37.14 2.82
68 69 1.335810 CCGCATGTGAGGAATCAATGG 59.664 52.381 8.11 0.00 37.14 3.16
69 70 2.291365 CGCATGTGAGGAATCAATGGA 58.709 47.619 0.00 0.00 0.00 3.41
70 71 2.684374 CGCATGTGAGGAATCAATGGAA 59.316 45.455 0.00 0.00 0.00 3.53
71 72 3.242969 CGCATGTGAGGAATCAATGGAAG 60.243 47.826 0.00 0.00 0.00 3.46
72 73 3.067742 GCATGTGAGGAATCAATGGAAGG 59.932 47.826 0.00 0.00 0.00 3.46
73 74 2.726821 TGTGAGGAATCAATGGAAGGC 58.273 47.619 0.00 0.00 0.00 4.35
74 75 2.309755 TGTGAGGAATCAATGGAAGGCT 59.690 45.455 0.00 0.00 0.00 4.58
75 76 2.686915 GTGAGGAATCAATGGAAGGCTG 59.313 50.000 0.00 0.00 0.00 4.85
76 77 2.577563 TGAGGAATCAATGGAAGGCTGA 59.422 45.455 0.00 0.00 0.00 4.26
77 78 2.948315 GAGGAATCAATGGAAGGCTGAC 59.052 50.000 0.00 0.00 0.00 3.51
78 79 2.027385 GGAATCAATGGAAGGCTGACC 58.973 52.381 4.34 4.34 0.00 4.02
79 80 1.672881 GAATCAATGGAAGGCTGACCG 59.327 52.381 6.53 0.00 42.76 4.79
80 81 0.107017 ATCAATGGAAGGCTGACCGG 60.107 55.000 0.00 0.00 42.76 5.28
81 82 2.044946 AATGGAAGGCTGACCGGC 60.045 61.111 0.00 0.00 42.76 6.13
82 83 3.976701 AATGGAAGGCTGACCGGCG 62.977 63.158 0.00 0.00 44.22 6.46
97 98 2.180017 GCGGCAGCCTTGTGATTG 59.820 61.111 10.54 0.00 37.42 2.67
98 99 2.334946 GCGGCAGCCTTGTGATTGA 61.335 57.895 10.54 0.00 37.42 2.57
99 100 1.660560 GCGGCAGCCTTGTGATTGAT 61.661 55.000 10.54 0.00 37.42 2.57
100 101 0.813184 CGGCAGCCTTGTGATTGATT 59.187 50.000 10.54 0.00 0.00 2.57
101 102 1.202222 CGGCAGCCTTGTGATTGATTC 60.202 52.381 10.54 0.00 0.00 2.52
102 103 1.135721 GGCAGCCTTGTGATTGATTCC 59.864 52.381 3.29 0.00 0.00 3.01
103 104 1.135721 GCAGCCTTGTGATTGATTCCC 59.864 52.381 0.00 0.00 0.00 3.97
104 105 1.753073 CAGCCTTGTGATTGATTCCCC 59.247 52.381 0.00 0.00 0.00 4.81
105 106 0.740737 GCCTTGTGATTGATTCCCCG 59.259 55.000 0.00 0.00 0.00 5.73
106 107 0.740737 CCTTGTGATTGATTCCCCGC 59.259 55.000 0.00 0.00 0.00 6.13
107 108 0.378257 CTTGTGATTGATTCCCCGCG 59.622 55.000 0.00 0.00 0.00 6.46
108 109 1.029408 TTGTGATTGATTCCCCGCGG 61.029 55.000 21.04 21.04 0.00 6.46
109 110 2.186826 GTGATTGATTCCCCGCGGG 61.187 63.158 37.99 37.99 46.11 6.13
124 125 4.415783 GGGAAACCGAGGCATTGT 57.584 55.556 0.00 0.00 43.64 2.71
125 126 1.883021 GGGAAACCGAGGCATTGTG 59.117 57.895 0.00 0.00 43.64 3.33
126 127 0.608035 GGGAAACCGAGGCATTGTGA 60.608 55.000 0.00 0.00 43.64 3.58
127 128 0.804989 GGAAACCGAGGCATTGTGAG 59.195 55.000 0.00 0.00 0.00 3.51
128 129 0.804989 GAAACCGAGGCATTGTGAGG 59.195 55.000 0.00 0.00 0.00 3.86
129 130 0.400213 AAACCGAGGCATTGTGAGGA 59.600 50.000 0.00 0.00 0.00 3.71
130 131 0.321653 AACCGAGGCATTGTGAGGAC 60.322 55.000 0.00 0.00 0.00 3.85
131 132 1.811266 CCGAGGCATTGTGAGGACG 60.811 63.158 0.00 0.00 0.00 4.79
132 133 1.215382 CGAGGCATTGTGAGGACGA 59.785 57.895 0.00 0.00 0.00 4.20
133 134 1.078759 CGAGGCATTGTGAGGACGAC 61.079 60.000 0.00 0.00 0.00 4.34
134 135 1.078759 GAGGCATTGTGAGGACGACG 61.079 60.000 0.00 0.00 0.00 5.12
135 136 1.374252 GGCATTGTGAGGACGACGT 60.374 57.895 0.00 0.00 0.00 4.34
136 137 1.626654 GGCATTGTGAGGACGACGTG 61.627 60.000 4.58 0.00 0.00 4.49
137 138 1.626654 GCATTGTGAGGACGACGTGG 61.627 60.000 4.58 0.00 0.00 4.94
138 139 1.374252 ATTGTGAGGACGACGTGGC 60.374 57.895 4.58 0.00 0.00 5.01
139 140 3.834447 TTGTGAGGACGACGTGGCG 62.834 63.158 4.58 0.00 37.29 5.69
175 176 3.810896 GGCCCGCCATTCGTTCAC 61.811 66.667 0.00 0.00 36.19 3.18
176 177 4.160635 GCCCGCCATTCGTTCACG 62.161 66.667 0.00 0.00 41.45 4.35
177 178 2.740826 CCCGCCATTCGTTCACGT 60.741 61.111 0.00 0.00 40.80 4.49
178 179 2.736682 CCCGCCATTCGTTCACGTC 61.737 63.158 0.00 0.00 40.80 4.34
179 180 2.024868 CCGCCATTCGTTCACGTCA 61.025 57.895 0.00 0.00 40.80 4.35
180 181 1.561717 CCGCCATTCGTTCACGTCAA 61.562 55.000 0.00 0.00 40.80 3.18
181 182 0.233590 CGCCATTCGTTCACGTCAAA 59.766 50.000 0.00 0.00 40.80 2.69
182 183 1.333347 CGCCATTCGTTCACGTCAAAA 60.333 47.619 0.00 0.00 40.80 2.44
183 184 2.041244 GCCATTCGTTCACGTCAAAAC 58.959 47.619 0.00 0.00 40.80 2.43
184 185 2.646250 CCATTCGTTCACGTCAAAACC 58.354 47.619 0.00 0.00 40.80 3.27
185 186 2.032302 CCATTCGTTCACGTCAAAACCA 59.968 45.455 0.00 0.00 40.80 3.67
186 187 3.487711 CCATTCGTTCACGTCAAAACCAA 60.488 43.478 0.00 0.00 40.80 3.67
187 188 4.286910 CATTCGTTCACGTCAAAACCAAT 58.713 39.130 0.00 0.00 40.80 3.16
188 189 4.358494 TTCGTTCACGTCAAAACCAATT 57.642 36.364 0.00 0.00 40.80 2.32
189 190 3.686128 TCGTTCACGTCAAAACCAATTG 58.314 40.909 0.00 0.00 40.80 2.32
190 191 3.127203 TCGTTCACGTCAAAACCAATTGT 59.873 39.130 4.43 0.00 40.80 2.71
191 192 3.480668 CGTTCACGTCAAAACCAATTGTC 59.519 43.478 4.43 0.00 34.11 3.18
192 193 3.701532 TCACGTCAAAACCAATTGTCC 57.298 42.857 4.43 0.00 0.00 4.02
193 194 2.359531 TCACGTCAAAACCAATTGTCCC 59.640 45.455 4.43 0.00 0.00 4.46
194 195 1.335496 ACGTCAAAACCAATTGTCCCG 59.665 47.619 4.43 0.00 0.00 5.14
195 196 1.335506 CGTCAAAACCAATTGTCCCGG 60.336 52.381 4.43 0.00 0.00 5.73
196 197 0.676736 TCAAAACCAATTGTCCCGGC 59.323 50.000 4.43 0.00 0.00 6.13
197 198 0.390860 CAAAACCAATTGTCCCGGCA 59.609 50.000 4.43 0.00 0.00 5.69
198 199 0.391228 AAAACCAATTGTCCCGGCAC 59.609 50.000 4.43 0.00 0.00 5.01
199 200 1.468506 AAACCAATTGTCCCGGCACC 61.469 55.000 4.43 0.00 0.00 5.01
200 201 3.068064 CCAATTGTCCCGGCACCC 61.068 66.667 4.43 0.00 0.00 4.61
201 202 3.068064 CAATTGTCCCGGCACCCC 61.068 66.667 0.00 0.00 0.00 4.95
202 203 4.376170 AATTGTCCCGGCACCCCC 62.376 66.667 0.00 0.00 0.00 5.40
250 251 4.309950 GGTCCGCCGACACCAGTT 62.310 66.667 7.50 0.00 41.13 3.16
251 252 2.280592 GTCCGCCGACACCAGTTT 60.281 61.111 0.00 0.00 38.99 2.66
252 253 2.029964 TCCGCCGACACCAGTTTC 59.970 61.111 0.00 0.00 0.00 2.78
253 254 3.411351 CCGCCGACACCAGTTTCG 61.411 66.667 0.00 0.00 34.93 3.46
257 258 3.047877 CGACACCAGTTTCGGGCC 61.048 66.667 0.00 0.00 0.00 5.80
258 259 2.112297 GACACCAGTTTCGGGCCA 59.888 61.111 4.39 0.00 0.00 5.36
259 260 1.527380 GACACCAGTTTCGGGCCAA 60.527 57.895 4.39 0.00 0.00 4.52
260 261 1.076632 ACACCAGTTTCGGGCCAAA 60.077 52.632 4.39 0.23 0.00 3.28
261 262 1.362355 CACCAGTTTCGGGCCAAAC 59.638 57.895 18.14 18.14 36.64 2.93
262 263 1.830847 ACCAGTTTCGGGCCAAACC 60.831 57.895 20.60 0.00 37.01 3.27
274 275 2.820986 CCAAACCGGCGAAAAATGG 58.179 52.632 9.30 5.59 0.00 3.16
275 276 0.669012 CCAAACCGGCGAAAAATGGG 60.669 55.000 9.30 0.00 0.00 4.00
276 277 1.005512 AAACCGGCGAAAAATGGGC 60.006 52.632 9.30 0.00 0.00 5.36
277 278 1.468506 AAACCGGCGAAAAATGGGCT 61.469 50.000 9.30 0.00 0.00 5.19
278 279 1.873270 AACCGGCGAAAAATGGGCTC 61.873 55.000 9.30 0.00 0.00 4.70
279 280 2.339556 CCGGCGAAAAATGGGCTCA 61.340 57.895 9.30 0.00 0.00 4.26
280 281 1.666209 CCGGCGAAAAATGGGCTCAT 61.666 55.000 9.30 0.00 34.56 2.90
281 282 0.526096 CGGCGAAAAATGGGCTCATG 60.526 55.000 0.00 0.00 33.18 3.07
282 283 0.179103 GGCGAAAAATGGGCTCATGG 60.179 55.000 0.00 0.00 33.18 3.66
283 284 0.179103 GCGAAAAATGGGCTCATGGG 60.179 55.000 0.00 0.00 33.18 4.00
284 285 0.461135 CGAAAAATGGGCTCATGGGG 59.539 55.000 0.00 0.00 33.18 4.96
285 286 0.832626 GAAAAATGGGCTCATGGGGG 59.167 55.000 0.00 0.00 33.18 5.40
286 287 1.273986 AAAAATGGGCTCATGGGGGC 61.274 55.000 0.00 0.00 33.18 5.80
287 288 4.528039 AATGGGCTCATGGGGGCG 62.528 66.667 0.00 0.00 33.18 6.13
303 304 3.041940 CGCGACTGAGCCGGTTTT 61.042 61.111 0.00 0.00 0.00 2.43
304 305 2.604174 CGCGACTGAGCCGGTTTTT 61.604 57.895 0.00 0.00 0.00 1.94
305 306 1.082104 GCGACTGAGCCGGTTTTTG 60.082 57.895 1.90 0.00 0.00 2.44
306 307 1.574428 CGACTGAGCCGGTTTTTGG 59.426 57.895 1.90 0.00 0.00 3.28
307 308 1.852067 CGACTGAGCCGGTTTTTGGG 61.852 60.000 1.90 0.00 0.00 4.12
313 314 2.571231 CCGGTTTTTGGGCATCGG 59.429 61.111 0.00 0.00 0.00 4.18
314 315 2.126110 CGGTTTTTGGGCATCGGC 60.126 61.111 0.00 0.00 40.13 5.54
315 316 2.126110 GGTTTTTGGGCATCGGCG 60.126 61.111 0.00 0.00 42.47 6.46
350 351 4.864334 GGGGCGTGGCTGGAGATG 62.864 72.222 0.00 0.00 0.00 2.90
352 353 4.479993 GGCGTGGCTGGAGATGCT 62.480 66.667 0.00 0.00 0.00 3.79
353 354 2.894387 GCGTGGCTGGAGATGCTC 60.894 66.667 0.00 0.00 0.00 4.26
354 355 2.898738 CGTGGCTGGAGATGCTCT 59.101 61.111 0.00 0.00 0.00 4.09
355 356 2.021068 GCGTGGCTGGAGATGCTCTA 62.021 60.000 0.00 0.00 0.00 2.43
356 357 0.461548 CGTGGCTGGAGATGCTCTAA 59.538 55.000 0.00 0.00 0.00 2.10
357 358 1.804372 CGTGGCTGGAGATGCTCTAAC 60.804 57.143 0.00 0.00 0.00 2.34
358 359 1.208052 GTGGCTGGAGATGCTCTAACA 59.792 52.381 0.00 0.00 0.00 2.41
359 360 2.121948 TGGCTGGAGATGCTCTAACAT 58.878 47.619 0.00 0.00 0.00 2.71
360 361 3.070159 GTGGCTGGAGATGCTCTAACATA 59.930 47.826 0.00 0.00 0.00 2.29
361 362 3.906218 TGGCTGGAGATGCTCTAACATAT 59.094 43.478 0.00 0.00 0.00 1.78
362 363 4.252073 GGCTGGAGATGCTCTAACATATG 58.748 47.826 0.00 0.00 0.00 1.78
363 364 4.262808 GGCTGGAGATGCTCTAACATATGT 60.263 45.833 1.41 1.41 0.00 2.29
364 365 4.689812 GCTGGAGATGCTCTAACATATGTG 59.310 45.833 9.63 0.00 0.00 3.21
365 366 5.741383 GCTGGAGATGCTCTAACATATGTGT 60.741 44.000 9.63 2.63 41.28 3.72
366 367 5.604565 TGGAGATGCTCTAACATATGTGTG 58.395 41.667 9.63 5.60 38.92 3.82
367 368 4.993584 GGAGATGCTCTAACATATGTGTGG 59.006 45.833 9.63 3.05 38.92 4.17
368 369 5.453903 GGAGATGCTCTAACATATGTGTGGT 60.454 44.000 9.63 0.00 38.92 4.16
369 370 5.363101 AGATGCTCTAACATATGTGTGGTG 58.637 41.667 9.63 5.14 38.92 4.17
370 371 4.551702 TGCTCTAACATATGTGTGGTGT 57.448 40.909 9.63 0.00 38.92 4.16
371 372 4.905429 TGCTCTAACATATGTGTGGTGTT 58.095 39.130 9.63 0.00 38.92 3.32
372 373 6.043854 TGCTCTAACATATGTGTGGTGTTA 57.956 37.500 9.63 0.00 38.92 2.41
373 374 6.649155 TGCTCTAACATATGTGTGGTGTTAT 58.351 36.000 9.63 0.00 38.92 1.89
374 375 6.538381 TGCTCTAACATATGTGTGGTGTTATG 59.462 38.462 9.63 0.00 38.92 1.90
375 376 6.538742 GCTCTAACATATGTGTGGTGTTATGT 59.461 38.462 9.63 0.00 38.92 2.29
376 377 7.709182 GCTCTAACATATGTGTGGTGTTATGTA 59.291 37.037 9.63 0.00 38.92 2.29
377 378 9.594478 CTCTAACATATGTGTGGTGTTATGTAA 57.406 33.333 9.63 0.00 38.92 2.41
378 379 9.373603 TCTAACATATGTGTGGTGTTATGTAAC 57.626 33.333 9.63 0.00 38.92 2.50
379 380 7.987750 AACATATGTGTGGTGTTATGTAACA 57.012 32.000 9.63 1.62 40.06 2.41
399 400 9.639601 TGTAACACTTCATGTCTTAGATTGTAG 57.360 33.333 0.00 0.00 42.31 2.74
400 401 9.856488 GTAACACTTCATGTCTTAGATTGTAGA 57.144 33.333 8.10 0.00 42.31 2.59
401 402 8.764524 AACACTTCATGTCTTAGATTGTAGAC 57.235 34.615 8.10 0.00 42.31 2.59
402 403 8.128322 ACACTTCATGTCTTAGATTGTAGACT 57.872 34.615 0.00 0.00 36.54 3.24
403 404 8.247562 ACACTTCATGTCTTAGATTGTAGACTC 58.752 37.037 0.00 0.00 36.54 3.36
404 405 8.246871 CACTTCATGTCTTAGATTGTAGACTCA 58.753 37.037 0.00 0.00 41.05 3.41
405 406 8.976353 ACTTCATGTCTTAGATTGTAGACTCAT 58.024 33.333 0.00 0.00 41.05 2.90
406 407 9.462174 CTTCATGTCTTAGATTGTAGACTCATC 57.538 37.037 0.00 0.00 41.05 2.92
407 408 8.759481 TCATGTCTTAGATTGTAGACTCATCT 57.241 34.615 0.00 0.00 41.05 2.90
408 409 9.194972 TCATGTCTTAGATTGTAGACTCATCTT 57.805 33.333 0.00 0.00 41.05 2.40
409 410 9.247126 CATGTCTTAGATTGTAGACTCATCTTG 57.753 37.037 0.00 0.00 41.05 3.02
410 411 8.354711 TGTCTTAGATTGTAGACTCATCTTGT 57.645 34.615 0.00 0.00 41.05 3.16
411 412 8.462811 TGTCTTAGATTGTAGACTCATCTTGTC 58.537 37.037 0.00 0.00 41.05 3.18
412 413 8.682710 GTCTTAGATTGTAGACTCATCTTGTCT 58.317 37.037 0.00 0.00 45.48 3.41
413 414 9.249053 TCTTAGATTGTAGACTCATCTTGTCTT 57.751 33.333 1.67 0.00 41.45 3.01
414 415 9.299963 CTTAGATTGTAGACTCATCTTGTCTTG 57.700 37.037 1.67 0.00 41.45 3.02
415 416 7.473735 AGATTGTAGACTCATCTTGTCTTGA 57.526 36.000 1.67 0.00 41.45 3.02
416 417 8.076910 AGATTGTAGACTCATCTTGTCTTGAT 57.923 34.615 1.67 0.00 41.45 2.57
417 418 9.194972 AGATTGTAGACTCATCTTGTCTTGATA 57.805 33.333 1.67 0.00 41.45 2.15
418 419 9.979578 GATTGTAGACTCATCTTGTCTTGATAT 57.020 33.333 1.67 0.00 41.45 1.63
419 420 9.761504 ATTGTAGACTCATCTTGTCTTGATATG 57.238 33.333 1.67 0.00 41.45 1.78
420 421 8.298729 TGTAGACTCATCTTGTCTTGATATGT 57.701 34.615 1.67 0.00 41.45 2.29
421 422 8.193438 TGTAGACTCATCTTGTCTTGATATGTG 58.807 37.037 1.67 0.00 41.45 3.21
422 423 7.180322 AGACTCATCTTGTCTTGATATGTGT 57.820 36.000 0.00 0.00 41.45 3.72
423 424 7.040494 AGACTCATCTTGTCTTGATATGTGTG 58.960 38.462 0.00 0.00 41.45 3.82
424 425 6.939622 ACTCATCTTGTCTTGATATGTGTGA 58.060 36.000 0.00 0.00 0.00 3.58
425 426 7.563020 ACTCATCTTGTCTTGATATGTGTGAT 58.437 34.615 0.00 0.00 0.00 3.06
426 427 7.494952 ACTCATCTTGTCTTGATATGTGTGATG 59.505 37.037 0.00 0.00 0.00 3.07
427 428 7.333323 TCATCTTGTCTTGATATGTGTGATGT 58.667 34.615 0.00 0.00 32.21 3.06
428 429 7.493645 TCATCTTGTCTTGATATGTGTGATGTC 59.506 37.037 0.00 0.00 32.21 3.06
429 430 6.700352 TCTTGTCTTGATATGTGTGATGTCA 58.300 36.000 0.00 0.00 0.00 3.58
430 431 6.591448 TCTTGTCTTGATATGTGTGATGTCAC 59.409 38.462 6.21 6.21 46.59 3.67
445 446 6.565234 GTGATGTCACAGTAACTAGCTATGT 58.435 40.000 8.22 0.00 45.75 2.29
446 447 7.036220 GTGATGTCACAGTAACTAGCTATGTT 58.964 38.462 8.22 11.59 45.75 2.71
447 448 8.188799 GTGATGTCACAGTAACTAGCTATGTTA 58.811 37.037 8.22 10.09 45.75 2.41
448 449 8.188799 TGATGTCACAGTAACTAGCTATGTTAC 58.811 37.037 24.10 24.10 45.81 2.50
449 450 6.860080 TGTCACAGTAACTAGCTATGTTACC 58.140 40.000 25.92 17.65 46.31 2.85
450 451 6.434965 TGTCACAGTAACTAGCTATGTTACCA 59.565 38.462 25.92 19.04 46.31 3.25
451 452 6.750963 GTCACAGTAACTAGCTATGTTACCAC 59.249 42.308 25.92 18.89 46.31 4.16
452 453 6.434965 TCACAGTAACTAGCTATGTTACCACA 59.565 38.462 25.92 14.68 46.31 4.17
453 454 7.123697 TCACAGTAACTAGCTATGTTACCACAT 59.876 37.037 25.92 14.84 46.31 3.21
454 455 7.222805 CACAGTAACTAGCTATGTTACCACATG 59.777 40.741 25.92 22.03 46.31 3.21
455 456 6.201044 CAGTAACTAGCTATGTTACCACATGC 59.799 42.308 25.92 11.98 46.31 4.06
456 457 4.073293 ACTAGCTATGTTACCACATGCC 57.927 45.455 0.00 0.00 43.92 4.40
457 458 2.348411 AGCTATGTTACCACATGCCC 57.652 50.000 0.00 0.00 43.92 5.36
458 459 1.133792 AGCTATGTTACCACATGCCCC 60.134 52.381 0.00 0.00 43.92 5.80
459 460 1.133792 GCTATGTTACCACATGCCCCT 60.134 52.381 0.00 0.00 43.92 4.79
460 461 2.105821 GCTATGTTACCACATGCCCCTA 59.894 50.000 0.00 0.00 43.92 3.53
461 462 3.244911 GCTATGTTACCACATGCCCCTAT 60.245 47.826 0.00 0.00 43.92 2.57
462 463 3.971468 ATGTTACCACATGCCCCTATT 57.029 42.857 0.00 0.00 42.46 1.73
463 464 3.748645 TGTTACCACATGCCCCTATTT 57.251 42.857 0.00 0.00 0.00 1.40
464 465 3.626930 TGTTACCACATGCCCCTATTTC 58.373 45.455 0.00 0.00 0.00 2.17
465 466 2.956333 GTTACCACATGCCCCTATTTCC 59.044 50.000 0.00 0.00 0.00 3.13
466 467 1.308877 ACCACATGCCCCTATTTCCT 58.691 50.000 0.00 0.00 0.00 3.36
467 468 1.215423 ACCACATGCCCCTATTTCCTC 59.785 52.381 0.00 0.00 0.00 3.71
468 469 1.215173 CCACATGCCCCTATTTCCTCA 59.785 52.381 0.00 0.00 0.00 3.86
469 470 2.158415 CCACATGCCCCTATTTCCTCAT 60.158 50.000 0.00 0.00 0.00 2.90
470 471 3.569491 CACATGCCCCTATTTCCTCATT 58.431 45.455 0.00 0.00 0.00 2.57
471 472 4.447616 CCACATGCCCCTATTTCCTCATTA 60.448 45.833 0.00 0.00 0.00 1.90
472 473 5.139727 CACATGCCCCTATTTCCTCATTAA 58.860 41.667 0.00 0.00 0.00 1.40
473 474 5.776716 CACATGCCCCTATTTCCTCATTAAT 59.223 40.000 0.00 0.00 0.00 1.40
474 475 6.268387 CACATGCCCCTATTTCCTCATTAATT 59.732 38.462 0.00 0.00 0.00 1.40
475 476 7.451255 CACATGCCCCTATTTCCTCATTAATTA 59.549 37.037 0.00 0.00 0.00 1.40
476 477 7.451566 ACATGCCCCTATTTCCTCATTAATTAC 59.548 37.037 0.00 0.00 0.00 1.89
477 478 6.916909 TGCCCCTATTTCCTCATTAATTACA 58.083 36.000 0.00 0.00 0.00 2.41
478 479 7.534852 TGCCCCTATTTCCTCATTAATTACAT 58.465 34.615 0.00 0.00 0.00 2.29
479 480 7.451255 TGCCCCTATTTCCTCATTAATTACATG 59.549 37.037 0.00 0.00 0.00 3.21
480 481 7.577616 GCCCCTATTTCCTCATTAATTACATGC 60.578 40.741 0.00 0.00 0.00 4.06
481 482 7.093771 CCCCTATTTCCTCATTAATTACATGCC 60.094 40.741 0.00 0.00 0.00 4.40
482 483 7.451255 CCCTATTTCCTCATTAATTACATGCCA 59.549 37.037 0.00 0.00 0.00 4.92
483 484 9.028284 CCTATTTCCTCATTAATTACATGCCAT 57.972 33.333 0.00 0.00 0.00 4.40
497 498 9.480053 AATTACATGCCATATTATCTGTTTTGC 57.520 29.630 0.00 0.00 0.00 3.68
498 499 5.846203 ACATGCCATATTATCTGTTTTGCC 58.154 37.500 0.00 0.00 0.00 4.52
499 500 5.599656 ACATGCCATATTATCTGTTTTGCCT 59.400 36.000 0.00 0.00 0.00 4.75
500 501 6.777091 ACATGCCATATTATCTGTTTTGCCTA 59.223 34.615 0.00 0.00 0.00 3.93
501 502 6.882610 TGCCATATTATCTGTTTTGCCTAG 57.117 37.500 0.00 0.00 0.00 3.02
502 503 6.600388 TGCCATATTATCTGTTTTGCCTAGA 58.400 36.000 0.00 0.00 0.00 2.43
503 504 6.712095 TGCCATATTATCTGTTTTGCCTAGAG 59.288 38.462 0.00 0.00 0.00 2.43
504 505 6.936900 GCCATATTATCTGTTTTGCCTAGAGA 59.063 38.462 0.00 0.00 0.00 3.10
505 506 7.609532 GCCATATTATCTGTTTTGCCTAGAGAT 59.390 37.037 0.00 0.00 0.00 2.75
513 514 9.887629 ATCTGTTTTGCCTAGAGATATATGATG 57.112 33.333 0.00 0.00 0.00 3.07
514 515 8.874156 TCTGTTTTGCCTAGAGATATATGATGT 58.126 33.333 0.00 0.00 0.00 3.06
515 516 9.499479 CTGTTTTGCCTAGAGATATATGATGTT 57.501 33.333 0.00 0.00 0.00 2.71
518 519 9.944376 TTTTGCCTAGAGATATATGATGTTACC 57.056 33.333 0.00 0.00 0.00 2.85
519 520 8.664669 TTGCCTAGAGATATATGATGTTACCA 57.335 34.615 0.00 0.00 0.00 3.25
520 521 8.844865 TGCCTAGAGATATATGATGTTACCAT 57.155 34.615 0.00 0.00 0.00 3.55
521 522 8.918116 TGCCTAGAGATATATGATGTTACCATC 58.082 37.037 0.00 0.00 46.41 3.51
522 523 9.142014 GCCTAGAGATATATGATGTTACCATCT 57.858 37.037 1.69 0.00 46.38 2.90
533 534 7.904558 TGATGTTACCATCTATTCTCTCTGT 57.095 36.000 1.69 0.00 46.38 3.41
534 535 8.311395 TGATGTTACCATCTATTCTCTCTGTT 57.689 34.615 1.69 0.00 46.38 3.16
535 536 8.417106 TGATGTTACCATCTATTCTCTCTGTTC 58.583 37.037 1.69 0.00 46.38 3.18
536 537 6.796426 TGTTACCATCTATTCTCTCTGTTCG 58.204 40.000 0.00 0.00 0.00 3.95
537 538 4.927978 ACCATCTATTCTCTCTGTTCGG 57.072 45.455 0.00 0.00 0.00 4.30
538 539 4.282496 ACCATCTATTCTCTCTGTTCGGT 58.718 43.478 0.00 0.00 0.00 4.69
539 540 4.098654 ACCATCTATTCTCTCTGTTCGGTG 59.901 45.833 0.00 0.00 0.00 4.94
540 541 4.339530 CCATCTATTCTCTCTGTTCGGTGA 59.660 45.833 0.00 0.00 0.00 4.02
541 542 5.163509 CCATCTATTCTCTCTGTTCGGTGAA 60.164 44.000 0.00 0.00 0.00 3.18
542 543 5.977489 TCTATTCTCTCTGTTCGGTGAAA 57.023 39.130 0.00 0.00 0.00 2.69
543 544 6.340962 TCTATTCTCTCTGTTCGGTGAAAA 57.659 37.500 0.00 0.00 0.00 2.29
544 545 6.390721 TCTATTCTCTCTGTTCGGTGAAAAG 58.609 40.000 0.00 0.00 0.00 2.27
545 546 4.402056 TTCTCTCTGTTCGGTGAAAAGT 57.598 40.909 0.00 0.00 29.65 2.66
546 547 3.717707 TCTCTCTGTTCGGTGAAAAGTG 58.282 45.455 0.00 0.00 29.65 3.16
547 548 3.132289 TCTCTCTGTTCGGTGAAAAGTGT 59.868 43.478 0.00 0.00 29.65 3.55
548 549 4.340097 TCTCTCTGTTCGGTGAAAAGTGTA 59.660 41.667 0.00 0.00 29.65 2.90
549 550 4.365723 TCTCTGTTCGGTGAAAAGTGTAC 58.634 43.478 0.00 0.00 29.65 2.90
550 551 4.116961 CTCTGTTCGGTGAAAAGTGTACA 58.883 43.478 0.00 0.00 29.65 2.90
551 552 4.699637 TCTGTTCGGTGAAAAGTGTACAT 58.300 39.130 0.00 0.00 29.65 2.29
552 553 5.120399 TCTGTTCGGTGAAAAGTGTACATT 58.880 37.500 0.00 0.00 29.65 2.71
553 554 5.587043 TCTGTTCGGTGAAAAGTGTACATTT 59.413 36.000 0.00 0.00 29.65 2.32
554 555 6.762187 TCTGTTCGGTGAAAAGTGTACATTTA 59.238 34.615 3.82 0.00 29.65 1.40
555 556 6.950545 TGTTCGGTGAAAAGTGTACATTTAG 58.049 36.000 3.82 0.00 0.00 1.85
556 557 6.762187 TGTTCGGTGAAAAGTGTACATTTAGA 59.238 34.615 3.82 0.00 0.00 2.10
557 558 7.280428 TGTTCGGTGAAAAGTGTACATTTAGAA 59.720 33.333 3.82 2.18 0.00 2.10
558 559 7.789273 TCGGTGAAAAGTGTACATTTAGAAA 57.211 32.000 3.82 0.00 0.00 2.52
559 560 8.385898 TCGGTGAAAAGTGTACATTTAGAAAT 57.614 30.769 3.82 0.00 0.00 2.17
560 561 8.842280 TCGGTGAAAAGTGTACATTTAGAAATT 58.158 29.630 3.82 0.00 0.00 1.82
561 562 9.458374 CGGTGAAAAGTGTACATTTAGAAATTT 57.542 29.630 3.82 0.00 0.00 1.82
589 590 9.883142 AGAACAAATTGTGAAATGGAGTAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
613 614 3.788333 GCATTAGAAAGATGCAAGCCA 57.212 42.857 0.00 0.00 46.96 4.75
614 615 3.442100 GCATTAGAAAGATGCAAGCCAC 58.558 45.455 0.00 0.00 46.96 5.01
615 616 3.736126 GCATTAGAAAGATGCAAGCCACC 60.736 47.826 0.00 0.00 46.96 4.61
616 617 2.877097 TAGAAAGATGCAAGCCACCA 57.123 45.000 0.00 0.00 0.00 4.17
617 618 2.226962 AGAAAGATGCAAGCCACCAT 57.773 45.000 0.00 0.00 0.00 3.55
618 619 2.097825 AGAAAGATGCAAGCCACCATC 58.902 47.619 0.00 0.00 38.45 3.51
620 621 1.760192 AAGATGCAAGCCACCATCTC 58.240 50.000 10.02 0.00 45.40 2.75
621 622 0.917533 AGATGCAAGCCACCATCTCT 59.082 50.000 0.00 0.00 43.37 3.10
622 623 1.134159 AGATGCAAGCCACCATCTCTC 60.134 52.381 0.00 0.00 43.37 3.20
623 624 0.106819 ATGCAAGCCACCATCTCTCC 60.107 55.000 0.00 0.00 0.00 3.71
624 625 1.203441 TGCAAGCCACCATCTCTCCT 61.203 55.000 0.00 0.00 0.00 3.69
625 626 0.463474 GCAAGCCACCATCTCTCCTC 60.463 60.000 0.00 0.00 0.00 3.71
626 627 1.202330 CAAGCCACCATCTCTCCTCT 58.798 55.000 0.00 0.00 0.00 3.69
627 628 1.558756 CAAGCCACCATCTCTCCTCTT 59.441 52.381 0.00 0.00 0.00 2.85
628 629 1.963985 AGCCACCATCTCTCCTCTTT 58.036 50.000 0.00 0.00 0.00 2.52
629 630 3.121929 AGCCACCATCTCTCCTCTTTA 57.878 47.619 0.00 0.00 0.00 1.85
630 631 3.454858 AGCCACCATCTCTCCTCTTTAA 58.545 45.455 0.00 0.00 0.00 1.52
631 632 4.043596 AGCCACCATCTCTCCTCTTTAAT 58.956 43.478 0.00 0.00 0.00 1.40
632 633 4.476479 AGCCACCATCTCTCCTCTTTAATT 59.524 41.667 0.00 0.00 0.00 1.40
633 634 5.667626 AGCCACCATCTCTCCTCTTTAATTA 59.332 40.000 0.00 0.00 0.00 1.40
634 635 5.760743 GCCACCATCTCTCCTCTTTAATTAC 59.239 44.000 0.00 0.00 0.00 1.89
635 636 6.292150 CCACCATCTCTCCTCTTTAATTACC 58.708 44.000 0.00 0.00 0.00 2.85
636 637 6.292150 CACCATCTCTCCTCTTTAATTACCC 58.708 44.000 0.00 0.00 0.00 3.69
637 638 5.970640 ACCATCTCTCCTCTTTAATTACCCA 59.029 40.000 0.00 0.00 0.00 4.51
638 639 6.100424 ACCATCTCTCCTCTTTAATTACCCAG 59.900 42.308 0.00 0.00 0.00 4.45
639 640 5.615925 TCTCTCCTCTTTAATTACCCAGC 57.384 43.478 0.00 0.00 0.00 4.85
640 641 4.409247 TCTCTCCTCTTTAATTACCCAGCC 59.591 45.833 0.00 0.00 0.00 4.85
641 642 4.371681 TCTCCTCTTTAATTACCCAGCCT 58.628 43.478 0.00 0.00 0.00 4.58
642 643 4.409247 TCTCCTCTTTAATTACCCAGCCTC 59.591 45.833 0.00 0.00 0.00 4.70
643 644 3.458487 TCCTCTTTAATTACCCAGCCTCC 59.542 47.826 0.00 0.00 0.00 4.30
644 645 3.202151 CCTCTTTAATTACCCAGCCTCCA 59.798 47.826 0.00 0.00 0.00 3.86
645 646 4.325030 CCTCTTTAATTACCCAGCCTCCAA 60.325 45.833 0.00 0.00 0.00 3.53
646 647 5.449553 CTCTTTAATTACCCAGCCTCCAAT 58.550 41.667 0.00 0.00 0.00 3.16
647 648 5.200483 TCTTTAATTACCCAGCCTCCAATG 58.800 41.667 0.00 0.00 0.00 2.82
648 649 4.871871 TTAATTACCCAGCCTCCAATGA 57.128 40.909 0.00 0.00 0.00 2.57
649 650 3.303351 AATTACCCAGCCTCCAATGAG 57.697 47.619 0.00 0.00 38.42 2.90
650 651 1.668826 TTACCCAGCCTCCAATGAGT 58.331 50.000 0.00 0.00 36.86 3.41
651 652 1.668826 TACCCAGCCTCCAATGAGTT 58.331 50.000 0.00 0.00 36.86 3.01
652 653 1.668826 ACCCAGCCTCCAATGAGTTA 58.331 50.000 0.00 0.00 36.86 2.24
653 654 1.992557 ACCCAGCCTCCAATGAGTTAA 59.007 47.619 0.00 0.00 36.86 2.01
654 655 2.025887 ACCCAGCCTCCAATGAGTTAAG 60.026 50.000 0.00 0.00 36.86 1.85
655 656 2.025887 CCCAGCCTCCAATGAGTTAAGT 60.026 50.000 0.00 0.00 36.86 2.24
656 657 3.012518 CCAGCCTCCAATGAGTTAAGTG 58.987 50.000 0.00 0.00 36.86 3.16
657 658 2.421424 CAGCCTCCAATGAGTTAAGTGC 59.579 50.000 0.00 0.00 36.86 4.40
658 659 2.040278 AGCCTCCAATGAGTTAAGTGCA 59.960 45.455 0.00 0.00 36.86 4.57
659 660 3.019564 GCCTCCAATGAGTTAAGTGCAT 58.980 45.455 0.00 0.00 36.86 3.96
660 661 4.080356 AGCCTCCAATGAGTTAAGTGCATA 60.080 41.667 0.00 0.00 36.86 3.14
661 662 4.823989 GCCTCCAATGAGTTAAGTGCATAT 59.176 41.667 0.00 0.00 36.86 1.78
662 663 5.997746 GCCTCCAATGAGTTAAGTGCATATA 59.002 40.000 0.00 0.00 36.86 0.86
663 664 6.486657 GCCTCCAATGAGTTAAGTGCATATAA 59.513 38.462 0.00 0.00 36.86 0.98
664 665 7.013274 GCCTCCAATGAGTTAAGTGCATATAAA 59.987 37.037 0.00 0.00 36.86 1.40
665 666 8.902806 CCTCCAATGAGTTAAGTGCATATAAAA 58.097 33.333 0.00 0.00 36.86 1.52
708 709 7.969536 AGAATGATATTGGTCTTGATTACCG 57.030 36.000 0.00 0.00 40.08 4.02
709 710 7.509546 AGAATGATATTGGTCTTGATTACCGT 58.490 34.615 0.00 0.00 40.08 4.83
710 711 7.442364 AGAATGATATTGGTCTTGATTACCGTG 59.558 37.037 0.00 0.00 40.08 4.94
711 712 5.984725 TGATATTGGTCTTGATTACCGTGT 58.015 37.500 0.00 0.00 40.08 4.49
712 713 5.815222 TGATATTGGTCTTGATTACCGTGTG 59.185 40.000 0.00 0.00 40.08 3.82
713 714 3.755112 TTGGTCTTGATTACCGTGTGA 57.245 42.857 0.00 0.00 40.08 3.58
714 715 3.973206 TGGTCTTGATTACCGTGTGAT 57.027 42.857 0.00 0.00 40.08 3.06
715 716 3.595173 TGGTCTTGATTACCGTGTGATG 58.405 45.455 0.00 0.00 40.08 3.07
716 717 3.259625 TGGTCTTGATTACCGTGTGATGA 59.740 43.478 0.00 0.00 40.08 2.92
717 718 3.865745 GGTCTTGATTACCGTGTGATGAG 59.134 47.826 0.00 0.00 0.00 2.90
718 719 4.381612 GGTCTTGATTACCGTGTGATGAGA 60.382 45.833 0.00 0.00 0.00 3.27
719 720 4.800993 GTCTTGATTACCGTGTGATGAGAG 59.199 45.833 0.00 0.00 0.00 3.20
720 721 4.705023 TCTTGATTACCGTGTGATGAGAGA 59.295 41.667 0.00 0.00 0.00 3.10
721 722 5.185056 TCTTGATTACCGTGTGATGAGAGAA 59.815 40.000 0.00 0.00 0.00 2.87
722 723 5.400066 TGATTACCGTGTGATGAGAGAAA 57.600 39.130 0.00 0.00 0.00 2.52
723 724 5.168569 TGATTACCGTGTGATGAGAGAAAC 58.831 41.667 0.00 0.00 0.00 2.78
724 725 4.866508 TTACCGTGTGATGAGAGAAACT 57.133 40.909 0.00 0.00 0.00 2.66
725 726 5.970317 TTACCGTGTGATGAGAGAAACTA 57.030 39.130 0.00 0.00 0.00 2.24
726 727 6.525578 TTACCGTGTGATGAGAGAAACTAT 57.474 37.500 0.00 0.00 0.00 2.12
727 728 5.407407 ACCGTGTGATGAGAGAAACTATT 57.593 39.130 0.00 0.00 0.00 1.73
728 729 5.794894 ACCGTGTGATGAGAGAAACTATTT 58.205 37.500 0.00 0.00 0.00 1.40
729 730 6.231211 ACCGTGTGATGAGAGAAACTATTTT 58.769 36.000 0.00 0.00 0.00 1.82
730 731 7.383687 ACCGTGTGATGAGAGAAACTATTTTA 58.616 34.615 0.00 0.00 0.00 1.52
731 732 7.876068 ACCGTGTGATGAGAGAAACTATTTTAA 59.124 33.333 0.00 0.00 0.00 1.52
732 733 8.717821 CCGTGTGATGAGAGAAACTATTTTAAA 58.282 33.333 0.00 0.00 0.00 1.52
742 743 9.657419 AGAGAAACTATTTTAAAATGCATTGGG 57.343 29.630 21.19 6.95 0.00 4.12
743 744 9.651913 GAGAAACTATTTTAAAATGCATTGGGA 57.348 29.630 21.19 0.00 0.00 4.37
756 757 8.537728 AAATGCATTGGGAAGATAGAAATACA 57.462 30.769 13.82 0.00 0.00 2.29
757 758 6.942532 TGCATTGGGAAGATAGAAATACAC 57.057 37.500 0.00 0.00 0.00 2.90
758 759 6.662755 TGCATTGGGAAGATAGAAATACACT 58.337 36.000 0.00 0.00 0.00 3.55
759 760 7.118723 TGCATTGGGAAGATAGAAATACACTT 58.881 34.615 0.00 0.00 0.00 3.16
760 761 7.615365 TGCATTGGGAAGATAGAAATACACTTT 59.385 33.333 0.00 0.00 0.00 2.66
761 762 8.470002 GCATTGGGAAGATAGAAATACACTTTT 58.530 33.333 0.00 0.00 0.00 2.27
763 764 9.981460 ATTGGGAAGATAGAAATACACTTTTCT 57.019 29.630 4.97 4.97 45.48 2.52
805 806 9.912634 ACTTAAATGTACATTCTTCACCAAATG 57.087 29.630 21.02 4.89 38.54 2.32
806 807 9.357652 CTTAAATGTACATTCTTCACCAAATGG 57.642 33.333 21.02 0.00 37.23 3.16
807 808 7.537596 AAATGTACATTCTTCACCAAATGGA 57.462 32.000 21.02 0.00 37.23 3.41
808 809 6.764308 ATGTACATTCTTCACCAAATGGAG 57.236 37.500 6.42 0.00 37.23 3.86
809 810 5.875224 TGTACATTCTTCACCAAATGGAGA 58.125 37.500 6.42 0.24 41.66 3.71
810 811 5.939883 TGTACATTCTTCACCAAATGGAGAG 59.060 40.000 6.42 1.29 44.28 3.20
811 812 5.246981 ACATTCTTCACCAAATGGAGAGA 57.753 39.130 6.42 3.61 44.28 3.10
812 813 5.251764 ACATTCTTCACCAAATGGAGAGAG 58.748 41.667 6.42 4.94 44.28 3.20
813 814 4.982241 TTCTTCACCAAATGGAGAGAGT 57.018 40.909 6.42 0.00 44.28 3.24
814 815 6.013379 ACATTCTTCACCAAATGGAGAGAGTA 60.013 38.462 6.42 0.02 44.28 2.59
815 816 6.627087 TTCTTCACCAAATGGAGAGAGTAT 57.373 37.500 6.42 0.00 44.28 2.12
816 817 7.733773 TTCTTCACCAAATGGAGAGAGTATA 57.266 36.000 6.42 0.00 44.28 1.47
817 818 7.921041 TCTTCACCAAATGGAGAGAGTATAT 57.079 36.000 6.42 0.00 38.11 0.86
818 819 8.324191 TCTTCACCAAATGGAGAGAGTATATT 57.676 34.615 6.42 0.00 38.11 1.28
819 820 8.772250 TCTTCACCAAATGGAGAGAGTATATTT 58.228 33.333 6.42 0.00 38.11 1.40
820 821 8.964476 TTCACCAAATGGAGAGAGTATATTTC 57.036 34.615 6.42 0.00 36.21 2.17
821 822 8.324191 TCACCAAATGGAGAGAGTATATTTCT 57.676 34.615 6.42 0.00 38.94 2.52
822 823 8.772250 TCACCAAATGGAGAGAGTATATTTCTT 58.228 33.333 6.42 0.00 38.94 2.52
823 824 9.401058 CACCAAATGGAGAGAGTATATTTCTTT 57.599 33.333 6.42 0.00 38.94 2.52
824 825 9.981460 ACCAAATGGAGAGAGTATATTTCTTTT 57.019 29.630 6.42 0.00 38.94 2.27
843 844 7.962964 TCTTTTATCATGGATAGTTTAGGCG 57.037 36.000 0.00 0.00 0.00 5.52
844 845 6.426937 TCTTTTATCATGGATAGTTTAGGCGC 59.573 38.462 0.00 0.00 0.00 6.53
845 846 5.483685 TTATCATGGATAGTTTAGGCGCT 57.516 39.130 7.64 0.00 0.00 5.92
846 847 3.838244 TCATGGATAGTTTAGGCGCTT 57.162 42.857 7.64 0.52 0.00 4.68
847 848 3.466836 TCATGGATAGTTTAGGCGCTTG 58.533 45.455 7.64 0.00 0.00 4.01
848 849 1.663695 TGGATAGTTTAGGCGCTTGC 58.336 50.000 7.64 0.00 38.11 4.01
849 850 0.582005 GGATAGTTTAGGCGCTTGCG 59.418 55.000 7.64 10.90 40.46 4.85
850 851 1.287425 GATAGTTTAGGCGCTTGCGT 58.713 50.000 16.38 0.15 40.46 5.24
851 852 1.664151 GATAGTTTAGGCGCTTGCGTT 59.336 47.619 16.38 7.94 40.46 4.84
852 853 1.515081 TAGTTTAGGCGCTTGCGTTT 58.485 45.000 16.38 7.60 40.46 3.60
853 854 0.040425 AGTTTAGGCGCTTGCGTTTG 60.040 50.000 16.38 0.00 40.46 2.93
854 855 0.317519 GTTTAGGCGCTTGCGTTTGT 60.318 50.000 16.38 1.97 40.46 2.83
855 856 1.069771 GTTTAGGCGCTTGCGTTTGTA 60.070 47.619 16.38 1.08 40.46 2.41
856 857 0.513820 TTAGGCGCTTGCGTTTGTAC 59.486 50.000 16.38 0.00 40.46 2.90
857 858 0.320073 TAGGCGCTTGCGTTTGTACT 60.320 50.000 16.38 7.92 40.46 2.73
858 859 1.440353 GGCGCTTGCGTTTGTACTG 60.440 57.895 16.38 0.00 40.46 2.74
859 860 1.567537 GCGCTTGCGTTTGTACTGA 59.432 52.632 16.38 0.00 0.00 3.41
860 861 0.165944 GCGCTTGCGTTTGTACTGAT 59.834 50.000 16.38 0.00 0.00 2.90
861 862 1.869503 CGCTTGCGTTTGTACTGATG 58.130 50.000 6.86 0.00 0.00 3.07
862 863 1.194547 CGCTTGCGTTTGTACTGATGT 59.805 47.619 6.86 0.00 0.00 3.06
863 864 2.349438 CGCTTGCGTTTGTACTGATGTT 60.349 45.455 6.86 0.00 0.00 2.71
864 865 3.120820 CGCTTGCGTTTGTACTGATGTTA 60.121 43.478 6.86 0.00 0.00 2.41
865 866 4.609559 CGCTTGCGTTTGTACTGATGTTAA 60.610 41.667 6.86 0.00 0.00 2.01
866 867 5.390613 GCTTGCGTTTGTACTGATGTTAAT 58.609 37.500 0.00 0.00 0.00 1.40
867 868 5.856455 GCTTGCGTTTGTACTGATGTTAATT 59.144 36.000 0.00 0.00 0.00 1.40
868 869 7.018826 GCTTGCGTTTGTACTGATGTTAATTA 58.981 34.615 0.00 0.00 0.00 1.40
869 870 7.535940 GCTTGCGTTTGTACTGATGTTAATTAA 59.464 33.333 0.00 0.00 0.00 1.40
870 871 9.388346 CTTGCGTTTGTACTGATGTTAATTAAA 57.612 29.630 0.00 0.00 0.00 1.52
871 872 9.731819 TTGCGTTTGTACTGATGTTAATTAAAA 57.268 25.926 0.00 0.00 0.00 1.52
872 873 9.388346 TGCGTTTGTACTGATGTTAATTAAAAG 57.612 29.630 0.00 0.00 0.00 2.27
873 874 9.601971 GCGTTTGTACTGATGTTAATTAAAAGA 57.398 29.630 0.00 0.00 0.00 2.52
890 891 8.917415 ATTAAAAGAAGAAGAAAATCGATGGC 57.083 30.769 0.00 0.00 0.00 4.40
917 918 1.273886 ACAAGCCTCTTCGTCTCTTCC 59.726 52.381 0.00 0.00 0.00 3.46
1273 1285 1.039856 AATTTTGGTGCTGCTCCGTT 58.960 45.000 15.25 5.68 0.00 4.44
1334 1346 6.256975 TGTTCGTCGATTAGGATGGTTTATTG 59.743 38.462 0.00 0.00 0.00 1.90
1406 1419 4.918583 GGTCTTAGTTTTGAGAGACTCGTG 59.081 45.833 0.00 0.00 38.77 4.35
1446 1459 5.189180 AGTTGCCTCTGGATATTTGAGTTC 58.811 41.667 0.00 0.00 0.00 3.01
1471 1484 9.899226 TCTATCTGATATTCGTTTGTACTGATG 57.101 33.333 0.00 0.00 0.00 3.07
1475 1488 9.249457 TCTGATATTCGTTTGTACTGATGAATC 57.751 33.333 15.26 7.94 34.36 2.52
1575 1588 8.275758 ACATCTGAGTTCTTGACCTAGTCTATA 58.724 37.037 0.00 0.00 33.15 1.31
1585 1598 7.780271 TCTTGACCTAGTCTATATGAGCTGAAA 59.220 37.037 0.00 0.00 33.15 2.69
1586 1599 8.484214 TTGACCTAGTCTATATGAGCTGAAAT 57.516 34.615 0.00 0.00 33.15 2.17
1587 1600 8.484214 TGACCTAGTCTATATGAGCTGAAATT 57.516 34.615 0.00 0.00 33.15 1.82
1646 1659 1.067582 GCGGTCAGAATACGGAGGG 59.932 63.158 0.00 0.00 0.00 4.30
1648 1661 1.041447 CGGTCAGAATACGGAGGGGT 61.041 60.000 0.00 0.00 0.00 4.95
1649 1662 0.464452 GGTCAGAATACGGAGGGGTG 59.536 60.000 0.00 0.00 0.00 4.61
1706 1719 2.166870 TGAGCGTTATTTTAGCGGAGGA 59.833 45.455 0.00 0.00 35.78 3.71
1721 1734 1.152989 GAGGAAGCTGAGCATGCGAG 61.153 60.000 13.01 13.44 35.28 5.03
1723 1736 3.152937 GAAGCTGAGCATGCGAGCG 62.153 63.158 28.26 14.45 40.15 5.03
1767 1780 1.366366 CGTTGGAGAGAACGGGTGT 59.634 57.895 0.00 0.00 43.99 4.16
1788 1801 2.438434 GCCAGGTGCTACGCCAAT 60.438 61.111 0.00 0.00 36.32 3.16
1806 1819 3.670055 CCAATGTTAAAGCAACTGAAGCG 59.330 43.478 0.00 0.00 38.05 4.68
1907 1920 2.373335 AGCACCCACCATTGTACAAA 57.627 45.000 13.23 0.00 0.00 2.83
2015 2029 4.629634 TGTGTATTTGTAAGAGTCATGCCG 59.370 41.667 0.00 0.00 0.00 5.69
2081 2095 1.167851 GCTTGTTATGTCAGCCAGCA 58.832 50.000 0.00 0.00 0.00 4.41
2084 2098 2.857186 TGTTATGTCAGCCAGCAAGA 57.143 45.000 0.00 0.00 0.00 3.02
2163 2177 2.836262 CTCTTAGCCCAGATGCAAGAG 58.164 52.381 0.00 0.00 38.68 2.85
2189 2203 0.869454 GGCATCTCTTCGCAGACTCG 60.869 60.000 0.00 0.00 34.32 4.18
2194 2208 1.197949 TCTCTTCGCAGACTCGAGTTG 59.802 52.381 21.08 19.08 39.82 3.16
2195 2209 1.197949 CTCTTCGCAGACTCGAGTTGA 59.802 52.381 21.08 12.51 39.82 3.18
2196 2210 1.813178 TCTTCGCAGACTCGAGTTGAT 59.187 47.619 21.08 6.29 39.82 2.57
2197 2211 2.229062 TCTTCGCAGACTCGAGTTGATT 59.771 45.455 21.08 3.26 39.82 2.57
2198 2212 1.982612 TCGCAGACTCGAGTTGATTG 58.017 50.000 21.08 15.99 34.09 2.67
2199 2213 1.539827 TCGCAGACTCGAGTTGATTGA 59.460 47.619 21.08 11.45 34.09 2.57
2200 2214 1.651138 CGCAGACTCGAGTTGATTGAC 59.349 52.381 21.08 4.69 0.00 3.18
2201 2215 2.669670 CGCAGACTCGAGTTGATTGACT 60.670 50.000 21.08 7.22 0.00 3.41
2202 2216 3.426292 CGCAGACTCGAGTTGATTGACTA 60.426 47.826 21.08 0.00 0.00 2.59
2203 2217 4.486090 GCAGACTCGAGTTGATTGACTAA 58.514 43.478 21.08 0.00 0.00 2.24
2204 2218 4.923871 GCAGACTCGAGTTGATTGACTAAA 59.076 41.667 21.08 0.00 0.00 1.85
2205 2219 5.578727 GCAGACTCGAGTTGATTGACTAAAT 59.421 40.000 21.08 0.00 0.00 1.40
2206 2220 6.237701 GCAGACTCGAGTTGATTGACTAAATC 60.238 42.308 21.08 1.05 44.37 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.487300 GAGTCCTGGACTAAGGGGTC 58.513 60.000 28.41 11.40 43.53 4.46
1 2 0.042881 GGAGTCCTGGACTAAGGGGT 59.957 60.000 28.41 5.74 43.53 4.95
2 3 0.691413 GGGAGTCCTGGACTAAGGGG 60.691 65.000 28.41 0.00 43.53 4.79
3 4 0.340208 AGGGAGTCCTGGACTAAGGG 59.660 60.000 28.41 0.00 43.53 3.95
4 5 1.007238 TGAGGGAGTCCTGGACTAAGG 59.993 57.143 28.41 0.00 43.53 2.69
5 6 2.534042 TGAGGGAGTCCTGGACTAAG 57.466 55.000 28.41 0.00 43.53 2.18
6 7 2.559931 CCTTGAGGGAGTCCTGGACTAA 60.560 54.545 28.41 17.32 43.53 2.24
7 8 1.007238 CCTTGAGGGAGTCCTGGACTA 59.993 57.143 28.41 10.70 43.53 2.59
8 9 0.252467 CCTTGAGGGAGTCCTGGACT 60.252 60.000 28.70 28.70 46.42 3.85
9 10 2.291856 CCTTGAGGGAGTCCTGGAC 58.708 63.158 19.20 19.20 45.05 4.02
10 11 4.896979 CCTTGAGGGAGTCCTGGA 57.103 61.111 9.58 0.00 45.05 3.86
45 46 3.173390 GATTCCTCACATGCGGCGC 62.173 63.158 27.44 27.44 0.00 6.53
46 47 1.368345 TTGATTCCTCACATGCGGCG 61.368 55.000 0.51 0.51 0.00 6.46
47 48 1.027357 ATTGATTCCTCACATGCGGC 58.973 50.000 0.00 0.00 0.00 6.53
48 49 1.335810 CCATTGATTCCTCACATGCGG 59.664 52.381 0.00 0.00 0.00 5.69
49 50 2.291365 TCCATTGATTCCTCACATGCG 58.709 47.619 0.00 0.00 0.00 4.73
50 51 3.067742 CCTTCCATTGATTCCTCACATGC 59.932 47.826 0.00 0.00 0.00 4.06
51 52 3.067742 GCCTTCCATTGATTCCTCACATG 59.932 47.826 0.00 0.00 0.00 3.21
52 53 3.053095 AGCCTTCCATTGATTCCTCACAT 60.053 43.478 0.00 0.00 0.00 3.21
53 54 2.309755 AGCCTTCCATTGATTCCTCACA 59.690 45.455 0.00 0.00 0.00 3.58
54 55 2.686915 CAGCCTTCCATTGATTCCTCAC 59.313 50.000 0.00 0.00 0.00 3.51
55 56 2.577563 TCAGCCTTCCATTGATTCCTCA 59.422 45.455 0.00 0.00 0.00 3.86
56 57 2.948315 GTCAGCCTTCCATTGATTCCTC 59.052 50.000 0.00 0.00 0.00 3.71
57 58 2.357569 GGTCAGCCTTCCATTGATTCCT 60.358 50.000 0.00 0.00 0.00 3.36
58 59 2.027385 GGTCAGCCTTCCATTGATTCC 58.973 52.381 0.00 0.00 0.00 3.01
59 60 1.672881 CGGTCAGCCTTCCATTGATTC 59.327 52.381 0.00 0.00 0.00 2.52
60 61 1.683011 CCGGTCAGCCTTCCATTGATT 60.683 52.381 0.00 0.00 0.00 2.57
61 62 0.107017 CCGGTCAGCCTTCCATTGAT 60.107 55.000 0.00 0.00 0.00 2.57
62 63 1.299648 CCGGTCAGCCTTCCATTGA 59.700 57.895 0.00 0.00 0.00 2.57
63 64 2.409870 GCCGGTCAGCCTTCCATTG 61.410 63.158 1.90 0.00 0.00 2.82
64 65 2.044946 GCCGGTCAGCCTTCCATT 60.045 61.111 1.90 0.00 0.00 3.16
65 66 4.473520 CGCCGGTCAGCCTTCCAT 62.474 66.667 1.90 0.00 0.00 3.41
80 81 1.660560 ATCAATCACAAGGCTGCCGC 61.661 55.000 13.96 0.00 0.00 6.53
81 82 0.813184 AATCAATCACAAGGCTGCCG 59.187 50.000 13.96 2.09 0.00 5.69
82 83 1.135721 GGAATCAATCACAAGGCTGCC 59.864 52.381 11.65 11.65 0.00 4.85
83 84 1.135721 GGGAATCAATCACAAGGCTGC 59.864 52.381 0.00 0.00 0.00 5.25
84 85 1.753073 GGGGAATCAATCACAAGGCTG 59.247 52.381 0.00 0.00 30.77 4.85
85 86 1.683011 CGGGGAATCAATCACAAGGCT 60.683 52.381 0.00 0.00 30.77 4.58
86 87 0.740737 CGGGGAATCAATCACAAGGC 59.259 55.000 0.00 0.00 30.77 4.35
87 88 0.740737 GCGGGGAATCAATCACAAGG 59.259 55.000 0.00 0.00 30.77 3.61
88 89 0.378257 CGCGGGGAATCAATCACAAG 59.622 55.000 0.00 0.00 30.77 3.16
89 90 1.029408 CCGCGGGGAATCAATCACAA 61.029 55.000 20.10 0.00 30.77 3.33
90 91 1.451207 CCGCGGGGAATCAATCACA 60.451 57.895 20.10 0.00 30.77 3.58
91 92 3.420943 CCGCGGGGAATCAATCAC 58.579 61.111 20.10 0.00 34.06 3.06
107 108 0.608035 TCACAATGCCTCGGTTTCCC 60.608 55.000 0.00 0.00 0.00 3.97
108 109 0.804989 CTCACAATGCCTCGGTTTCC 59.195 55.000 0.00 0.00 0.00 3.13
109 110 0.804989 CCTCACAATGCCTCGGTTTC 59.195 55.000 0.00 0.00 0.00 2.78
110 111 0.400213 TCCTCACAATGCCTCGGTTT 59.600 50.000 0.00 0.00 0.00 3.27
111 112 0.321653 GTCCTCACAATGCCTCGGTT 60.322 55.000 0.00 0.00 0.00 4.44
112 113 1.296715 GTCCTCACAATGCCTCGGT 59.703 57.895 0.00 0.00 0.00 4.69
113 114 1.811266 CGTCCTCACAATGCCTCGG 60.811 63.158 0.00 0.00 0.00 4.63
114 115 1.078759 GTCGTCCTCACAATGCCTCG 61.079 60.000 0.00 0.00 0.00 4.63
115 116 1.078759 CGTCGTCCTCACAATGCCTC 61.079 60.000 0.00 0.00 0.00 4.70
116 117 1.079819 CGTCGTCCTCACAATGCCT 60.080 57.895 0.00 0.00 0.00 4.75
117 118 1.374252 ACGTCGTCCTCACAATGCC 60.374 57.895 0.00 0.00 0.00 4.40
118 119 1.626654 CCACGTCGTCCTCACAATGC 61.627 60.000 0.00 0.00 0.00 3.56
119 120 1.626654 GCCACGTCGTCCTCACAATG 61.627 60.000 0.00 0.00 0.00 2.82
120 121 1.374252 GCCACGTCGTCCTCACAAT 60.374 57.895 0.00 0.00 0.00 2.71
121 122 2.028484 GCCACGTCGTCCTCACAA 59.972 61.111 0.00 0.00 0.00 3.33
122 123 4.337060 CGCCACGTCGTCCTCACA 62.337 66.667 0.00 0.00 0.00 3.58
158 159 3.810896 GTGAACGAATGGCGGGCC 61.811 66.667 1.86 1.86 46.49 5.80
159 160 4.160635 CGTGAACGAATGGCGGGC 62.161 66.667 0.00 0.00 46.49 6.13
160 161 2.736682 GACGTGAACGAATGGCGGG 61.737 63.158 10.26 0.00 46.49 6.13
161 162 1.561717 TTGACGTGAACGAATGGCGG 61.562 55.000 10.26 0.00 46.49 6.13
163 164 2.041244 GTTTTGACGTGAACGAATGGC 58.959 47.619 10.26 0.00 43.02 4.40
164 165 2.032302 TGGTTTTGACGTGAACGAATGG 59.968 45.455 10.26 0.00 43.02 3.16
165 166 3.326733 TGGTTTTGACGTGAACGAATG 57.673 42.857 10.26 0.00 43.02 2.67
166 167 4.561735 ATTGGTTTTGACGTGAACGAAT 57.438 36.364 10.26 1.63 43.02 3.34
167 168 4.099120 CAATTGGTTTTGACGTGAACGAA 58.901 39.130 10.26 0.00 43.02 3.85
168 169 3.127203 ACAATTGGTTTTGACGTGAACGA 59.873 39.130 10.83 0.00 43.02 3.85
169 170 3.430931 ACAATTGGTTTTGACGTGAACG 58.569 40.909 10.83 0.40 46.33 3.95
170 171 3.794564 GGACAATTGGTTTTGACGTGAAC 59.205 43.478 10.83 0.00 0.00 3.18
171 172 3.181485 GGGACAATTGGTTTTGACGTGAA 60.181 43.478 10.83 0.00 0.00 3.18
172 173 2.359531 GGGACAATTGGTTTTGACGTGA 59.640 45.455 10.83 0.00 0.00 4.35
173 174 2.738135 GGGACAATTGGTTTTGACGTG 58.262 47.619 10.83 0.00 0.00 4.49
174 175 1.335496 CGGGACAATTGGTTTTGACGT 59.665 47.619 10.83 0.00 0.00 4.34
175 176 1.335506 CCGGGACAATTGGTTTTGACG 60.336 52.381 10.83 4.46 0.00 4.35
176 177 1.604438 GCCGGGACAATTGGTTTTGAC 60.604 52.381 10.83 0.00 0.00 3.18
177 178 0.676736 GCCGGGACAATTGGTTTTGA 59.323 50.000 10.83 0.00 0.00 2.69
178 179 0.390860 TGCCGGGACAATTGGTTTTG 59.609 50.000 10.83 0.00 0.00 2.44
179 180 0.391228 GTGCCGGGACAATTGGTTTT 59.609 50.000 22.60 0.00 0.00 2.43
180 181 1.468506 GGTGCCGGGACAATTGGTTT 61.469 55.000 28.30 0.00 0.00 3.27
181 182 1.906333 GGTGCCGGGACAATTGGTT 60.906 57.895 28.30 0.00 0.00 3.67
182 183 2.282887 GGTGCCGGGACAATTGGT 60.283 61.111 28.30 0.00 0.00 3.67
183 184 3.068064 GGGTGCCGGGACAATTGG 61.068 66.667 28.30 0.00 0.00 3.16
184 185 3.068064 GGGGTGCCGGGACAATTG 61.068 66.667 28.30 3.24 0.00 2.32
185 186 4.376170 GGGGGTGCCGGGACAATT 62.376 66.667 28.30 0.00 0.00 2.32
233 234 3.819877 AAACTGGTGTCGGCGGACC 62.820 63.158 20.34 18.54 42.73 4.46
234 235 2.280592 AAACTGGTGTCGGCGGAC 60.281 61.111 16.90 16.90 43.71 4.79
235 236 2.029964 GAAACTGGTGTCGGCGGA 59.970 61.111 7.21 0.00 0.00 5.54
236 237 3.411351 CGAAACTGGTGTCGGCGG 61.411 66.667 7.21 0.00 33.62 6.13
240 241 3.047877 GGCCCGAAACTGGTGTCG 61.048 66.667 6.35 6.35 37.01 4.35
241 242 1.104577 TTTGGCCCGAAACTGGTGTC 61.105 55.000 0.00 0.00 0.00 3.67
242 243 1.076632 TTTGGCCCGAAACTGGTGT 60.077 52.632 0.00 0.00 0.00 4.16
243 244 1.362355 GTTTGGCCCGAAACTGGTG 59.638 57.895 10.65 0.00 33.73 4.17
244 245 1.830847 GGTTTGGCCCGAAACTGGT 60.831 57.895 15.97 0.00 36.30 4.00
245 246 3.047735 GGTTTGGCCCGAAACTGG 58.952 61.111 15.97 0.00 36.30 4.00
256 257 0.669012 CCCATTTTTCGCCGGTTTGG 60.669 55.000 1.90 0.00 42.50 3.28
257 258 1.288419 GCCCATTTTTCGCCGGTTTG 61.288 55.000 1.90 0.00 0.00 2.93
258 259 1.005512 GCCCATTTTTCGCCGGTTT 60.006 52.632 1.90 0.00 0.00 3.27
259 260 1.873270 GAGCCCATTTTTCGCCGGTT 61.873 55.000 1.90 0.00 0.00 4.44
260 261 2.282887 AGCCCATTTTTCGCCGGT 60.283 55.556 1.90 0.00 0.00 5.28
261 262 1.666209 ATGAGCCCATTTTTCGCCGG 61.666 55.000 0.00 0.00 0.00 6.13
262 263 0.526096 CATGAGCCCATTTTTCGCCG 60.526 55.000 0.00 0.00 0.00 6.46
263 264 0.179103 CCATGAGCCCATTTTTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
264 265 0.179103 CCCATGAGCCCATTTTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
265 266 0.461135 CCCCATGAGCCCATTTTTCG 59.539 55.000 0.00 0.00 0.00 3.46
266 267 0.832626 CCCCCATGAGCCCATTTTTC 59.167 55.000 0.00 0.00 0.00 2.29
267 268 1.273986 GCCCCCATGAGCCCATTTTT 61.274 55.000 0.00 0.00 0.00 1.94
268 269 1.690283 GCCCCCATGAGCCCATTTT 60.690 57.895 0.00 0.00 0.00 1.82
269 270 2.041612 GCCCCCATGAGCCCATTT 60.042 61.111 0.00 0.00 0.00 2.32
270 271 4.528039 CGCCCCCATGAGCCCATT 62.528 66.667 0.00 0.00 0.00 3.16
286 287 2.604174 AAAAACCGGCTCAGTCGCG 61.604 57.895 0.00 0.00 0.00 5.87
287 288 1.082104 CAAAAACCGGCTCAGTCGC 60.082 57.895 0.00 0.00 0.00 5.19
288 289 1.574428 CCAAAAACCGGCTCAGTCG 59.426 57.895 0.00 0.00 0.00 4.18
289 290 1.956802 CCCAAAAACCGGCTCAGTC 59.043 57.895 0.00 0.00 0.00 3.51
290 291 2.200337 GCCCAAAAACCGGCTCAGT 61.200 57.895 0.00 0.00 42.21 3.41
291 292 1.535204 ATGCCCAAAAACCGGCTCAG 61.535 55.000 0.00 0.00 45.90 3.35
292 293 1.531739 GATGCCCAAAAACCGGCTCA 61.532 55.000 0.00 0.00 45.90 4.26
293 294 1.215382 GATGCCCAAAAACCGGCTC 59.785 57.895 0.00 0.00 45.90 4.70
294 295 2.635443 CGATGCCCAAAAACCGGCT 61.635 57.895 0.00 0.00 45.90 5.52
295 296 2.126110 CGATGCCCAAAAACCGGC 60.126 61.111 0.00 0.00 45.92 6.13
296 297 2.571231 CCGATGCCCAAAAACCGG 59.429 61.111 0.00 0.00 0.00 5.28
297 298 2.126110 GCCGATGCCCAAAAACCG 60.126 61.111 0.00 0.00 0.00 4.44
298 299 2.126110 CGCCGATGCCCAAAAACC 60.126 61.111 0.00 0.00 0.00 3.27
299 300 2.809174 GCGCCGATGCCCAAAAAC 60.809 61.111 0.00 0.00 0.00 2.43
333 334 4.864334 CATCTCCAGCCACGCCCC 62.864 72.222 0.00 0.00 0.00 5.80
335 336 4.479993 AGCATCTCCAGCCACGCC 62.480 66.667 0.00 0.00 0.00 5.68
336 337 2.894387 GAGCATCTCCAGCCACGC 60.894 66.667 0.00 0.00 0.00 5.34
341 342 7.720723 CACACATATGTTAGAGCATCTCCAGC 61.721 46.154 5.37 0.00 40.94 4.85
342 343 5.695363 CACACATATGTTAGAGCATCTCCAG 59.305 44.000 5.37 0.00 40.94 3.86
343 344 5.453762 CCACACATATGTTAGAGCATCTCCA 60.454 44.000 5.37 0.00 40.94 3.86
344 345 4.993584 CCACACATATGTTAGAGCATCTCC 59.006 45.833 5.37 0.00 40.94 3.71
345 346 5.464722 CACCACACATATGTTAGAGCATCTC 59.535 44.000 5.37 0.00 40.94 2.75
346 347 5.104776 ACACCACACATATGTTAGAGCATCT 60.105 40.000 5.37 0.00 43.64 2.90
347 348 5.118990 ACACCACACATATGTTAGAGCATC 58.881 41.667 5.37 0.00 36.72 3.91
348 349 5.102953 ACACCACACATATGTTAGAGCAT 57.897 39.130 5.37 0.00 36.72 3.79
349 350 4.551702 ACACCACACATATGTTAGAGCA 57.448 40.909 5.37 0.00 36.72 4.26
350 351 6.538742 ACATAACACCACACATATGTTAGAGC 59.461 38.462 5.37 0.00 40.95 4.09
351 352 9.594478 TTACATAACACCACACATATGTTAGAG 57.406 33.333 5.37 0.00 40.95 2.43
352 353 9.373603 GTTACATAACACCACACATATGTTAGA 57.626 33.333 5.37 0.00 40.95 2.10
353 354 9.157104 TGTTACATAACACCACACATATGTTAG 57.843 33.333 5.37 1.33 40.95 2.34
355 356 7.987750 TGTTACATAACACCACACATATGTT 57.012 32.000 5.37 0.00 40.93 2.71
373 374 9.639601 CTACAATCTAAGACATGAAGTGTTACA 57.360 33.333 0.00 0.00 42.36 2.41
374 375 9.856488 TCTACAATCTAAGACATGAAGTGTTAC 57.144 33.333 0.00 0.00 42.36 2.50
375 376 9.856488 GTCTACAATCTAAGACATGAAGTGTTA 57.144 33.333 0.00 0.00 42.36 2.41
376 377 8.589338 AGTCTACAATCTAAGACATGAAGTGTT 58.411 33.333 0.00 0.00 43.74 3.32
377 378 8.128322 AGTCTACAATCTAAGACATGAAGTGT 57.872 34.615 0.00 0.00 43.74 3.55
378 379 8.246871 TGAGTCTACAATCTAAGACATGAAGTG 58.753 37.037 0.00 0.00 43.74 3.16
379 380 8.354711 TGAGTCTACAATCTAAGACATGAAGT 57.645 34.615 0.00 0.00 43.74 3.01
380 381 9.462174 GATGAGTCTACAATCTAAGACATGAAG 57.538 37.037 0.00 0.00 43.74 3.02
381 382 9.194972 AGATGAGTCTACAATCTAAGACATGAA 57.805 33.333 0.00 0.00 43.74 2.57
382 383 8.759481 AGATGAGTCTACAATCTAAGACATGA 57.241 34.615 0.00 0.00 43.74 3.07
383 384 9.247126 CAAGATGAGTCTACAATCTAAGACATG 57.753 37.037 5.38 0.00 43.74 3.21
384 385 8.976353 ACAAGATGAGTCTACAATCTAAGACAT 58.024 33.333 5.38 0.00 43.74 3.06
385 386 8.354711 ACAAGATGAGTCTACAATCTAAGACA 57.645 34.615 5.38 0.00 43.74 3.41
386 387 8.682710 AGACAAGATGAGTCTACAATCTAAGAC 58.317 37.037 0.00 0.00 44.10 3.01
387 388 8.815565 AGACAAGATGAGTCTACAATCTAAGA 57.184 34.615 0.00 0.00 44.10 2.10
388 389 9.299963 CAAGACAAGATGAGTCTACAATCTAAG 57.700 37.037 0.00 0.00 45.11 2.18
389 390 9.025041 TCAAGACAAGATGAGTCTACAATCTAA 57.975 33.333 0.00 0.00 45.11 2.10
390 391 8.581253 TCAAGACAAGATGAGTCTACAATCTA 57.419 34.615 0.00 0.00 45.11 1.98
391 392 7.473735 TCAAGACAAGATGAGTCTACAATCT 57.526 36.000 0.00 0.00 45.11 2.40
392 393 9.979578 ATATCAAGACAAGATGAGTCTACAATC 57.020 33.333 0.00 0.00 45.11 2.67
393 394 9.761504 CATATCAAGACAAGATGAGTCTACAAT 57.238 33.333 0.00 0.00 45.11 2.71
394 395 8.753133 ACATATCAAGACAAGATGAGTCTACAA 58.247 33.333 0.00 0.00 45.11 2.41
395 396 8.193438 CACATATCAAGACAAGATGAGTCTACA 58.807 37.037 0.00 0.00 45.11 2.74
396 397 8.194104 ACACATATCAAGACAAGATGAGTCTAC 58.806 37.037 0.00 0.00 45.11 2.59
397 398 8.193438 CACACATATCAAGACAAGATGAGTCTA 58.807 37.037 0.00 0.00 45.11 2.59
399 400 7.038048 TCACACATATCAAGACAAGATGAGTC 58.962 38.462 0.00 0.00 36.26 3.36
400 401 6.939622 TCACACATATCAAGACAAGATGAGT 58.060 36.000 0.00 0.00 0.00 3.41
401 402 7.494952 ACATCACACATATCAAGACAAGATGAG 59.505 37.037 0.00 0.00 34.73 2.90
402 403 7.333323 ACATCACACATATCAAGACAAGATGA 58.667 34.615 0.00 0.00 34.73 2.92
403 404 7.279313 TGACATCACACATATCAAGACAAGATG 59.721 37.037 0.00 0.00 36.24 2.90
404 405 7.279536 GTGACATCACACATATCAAGACAAGAT 59.720 37.037 7.15 0.00 45.75 2.40
405 406 6.591448 GTGACATCACACATATCAAGACAAGA 59.409 38.462 7.15 0.00 45.75 3.02
406 407 6.769076 GTGACATCACACATATCAAGACAAG 58.231 40.000 7.15 0.00 45.75 3.16
407 408 6.726258 GTGACATCACACATATCAAGACAA 57.274 37.500 7.15 0.00 45.75 3.18
421 422 6.565234 ACATAGCTAGTTACTGTGACATCAC 58.435 40.000 5.02 5.02 46.59 3.06
422 423 6.775594 ACATAGCTAGTTACTGTGACATCA 57.224 37.500 5.48 0.00 31.39 3.07
423 424 7.648510 GGTAACATAGCTAGTTACTGTGACATC 59.351 40.741 27.05 15.13 46.49 3.06
424 425 7.123697 TGGTAACATAGCTAGTTACTGTGACAT 59.876 37.037 27.05 8.10 46.49 3.06
425 426 6.434965 TGGTAACATAGCTAGTTACTGTGACA 59.565 38.462 27.05 19.73 46.49 3.58
426 427 6.860080 TGGTAACATAGCTAGTTACTGTGAC 58.140 40.000 27.05 18.01 46.49 3.67
444 445 2.956333 GGAAATAGGGGCATGTGGTAAC 59.044 50.000 0.00 0.00 0.00 2.50
445 446 2.856231 AGGAAATAGGGGCATGTGGTAA 59.144 45.455 0.00 0.00 0.00 2.85
446 447 2.441750 GAGGAAATAGGGGCATGTGGTA 59.558 50.000 0.00 0.00 0.00 3.25
447 448 1.215423 GAGGAAATAGGGGCATGTGGT 59.785 52.381 0.00 0.00 0.00 4.16
448 449 1.215173 TGAGGAAATAGGGGCATGTGG 59.785 52.381 0.00 0.00 0.00 4.17
449 450 2.734755 TGAGGAAATAGGGGCATGTG 57.265 50.000 0.00 0.00 0.00 3.21
450 451 3.979501 AATGAGGAAATAGGGGCATGT 57.020 42.857 0.00 0.00 0.00 3.21
451 452 6.923199 AATTAATGAGGAAATAGGGGCATG 57.077 37.500 0.00 0.00 0.00 4.06
452 453 7.534852 TGTAATTAATGAGGAAATAGGGGCAT 58.465 34.615 0.00 0.00 0.00 4.40
453 454 6.916909 TGTAATTAATGAGGAAATAGGGGCA 58.083 36.000 0.00 0.00 0.00 5.36
454 455 7.577616 GCATGTAATTAATGAGGAAATAGGGGC 60.578 40.741 10.14 0.00 0.00 5.80
455 456 7.093771 GGCATGTAATTAATGAGGAAATAGGGG 60.094 40.741 10.14 0.00 0.00 4.79
456 457 7.451255 TGGCATGTAATTAATGAGGAAATAGGG 59.549 37.037 10.14 0.00 0.00 3.53
457 458 8.408043 TGGCATGTAATTAATGAGGAAATAGG 57.592 34.615 10.14 0.00 0.00 2.57
471 472 9.480053 GCAAAACAGATAATATGGCATGTAATT 57.520 29.630 10.98 4.70 0.00 1.40
472 473 8.090214 GGCAAAACAGATAATATGGCATGTAAT 58.910 33.333 10.98 0.00 33.98 1.89
473 474 7.287466 AGGCAAAACAGATAATATGGCATGTAA 59.713 33.333 10.98 0.00 35.99 2.41
474 475 6.777091 AGGCAAAACAGATAATATGGCATGTA 59.223 34.615 10.98 2.59 35.99 2.29
475 476 5.599656 AGGCAAAACAGATAATATGGCATGT 59.400 36.000 10.98 0.00 35.99 3.21
476 477 6.092955 AGGCAAAACAGATAATATGGCATG 57.907 37.500 10.98 0.00 35.99 4.06
477 478 7.233632 TCTAGGCAAAACAGATAATATGGCAT 58.766 34.615 4.88 4.88 35.99 4.40
478 479 6.600388 TCTAGGCAAAACAGATAATATGGCA 58.400 36.000 0.00 0.00 35.99 4.92
479 480 6.936900 TCTCTAGGCAAAACAGATAATATGGC 59.063 38.462 0.00 0.00 0.00 4.40
487 488 9.887629 CATCATATATCTCTAGGCAAAACAGAT 57.112 33.333 0.00 0.00 0.00 2.90
488 489 8.874156 ACATCATATATCTCTAGGCAAAACAGA 58.126 33.333 0.00 0.00 0.00 3.41
489 490 9.499479 AACATCATATATCTCTAGGCAAAACAG 57.501 33.333 0.00 0.00 0.00 3.16
492 493 9.944376 GGTAACATCATATATCTCTAGGCAAAA 57.056 33.333 0.00 0.00 0.00 2.44
493 494 9.100197 TGGTAACATCATATATCTCTAGGCAAA 57.900 33.333 0.00 0.00 46.17 3.68
494 495 8.664669 TGGTAACATCATATATCTCTAGGCAA 57.335 34.615 0.00 0.00 46.17 4.52
513 514 6.183360 ACCGAACAGAGAGAATAGATGGTAAC 60.183 42.308 0.00 0.00 0.00 2.50
514 515 5.892119 ACCGAACAGAGAGAATAGATGGTAA 59.108 40.000 0.00 0.00 0.00 2.85
515 516 5.299531 CACCGAACAGAGAGAATAGATGGTA 59.700 44.000 0.00 0.00 0.00 3.25
516 517 4.098654 CACCGAACAGAGAGAATAGATGGT 59.901 45.833 0.00 0.00 0.00 3.55
517 518 4.339530 TCACCGAACAGAGAGAATAGATGG 59.660 45.833 0.00 0.00 0.00 3.51
518 519 5.506686 TCACCGAACAGAGAGAATAGATG 57.493 43.478 0.00 0.00 0.00 2.90
519 520 6.531503 TTTCACCGAACAGAGAGAATAGAT 57.468 37.500 0.00 0.00 0.00 1.98
520 521 5.977489 TTTCACCGAACAGAGAGAATAGA 57.023 39.130 0.00 0.00 0.00 1.98
521 522 6.090088 CACTTTTCACCGAACAGAGAGAATAG 59.910 42.308 0.00 0.00 0.00 1.73
522 523 5.926542 CACTTTTCACCGAACAGAGAGAATA 59.073 40.000 0.00 0.00 0.00 1.75
523 524 4.752101 CACTTTTCACCGAACAGAGAGAAT 59.248 41.667 0.00 0.00 0.00 2.40
524 525 4.119862 CACTTTTCACCGAACAGAGAGAA 58.880 43.478 0.00 0.00 0.00 2.87
525 526 3.132289 ACACTTTTCACCGAACAGAGAGA 59.868 43.478 0.00 0.00 0.00 3.10
526 527 3.458189 ACACTTTTCACCGAACAGAGAG 58.542 45.455 0.00 0.00 0.00 3.20
527 528 3.536956 ACACTTTTCACCGAACAGAGA 57.463 42.857 0.00 0.00 0.00 3.10
528 529 4.116961 TGTACACTTTTCACCGAACAGAG 58.883 43.478 0.00 0.00 0.00 3.35
529 530 4.126208 TGTACACTTTTCACCGAACAGA 57.874 40.909 0.00 0.00 0.00 3.41
530 531 5.418310 AATGTACACTTTTCACCGAACAG 57.582 39.130 0.00 0.00 0.00 3.16
531 532 5.821516 AAATGTACACTTTTCACCGAACA 57.178 34.783 0.00 0.00 0.00 3.18
532 533 7.181143 TCTAAATGTACACTTTTCACCGAAC 57.819 36.000 0.00 0.00 0.00 3.95
533 534 7.789273 TTCTAAATGTACACTTTTCACCGAA 57.211 32.000 0.00 0.00 0.00 4.30
534 535 7.789273 TTTCTAAATGTACACTTTTCACCGA 57.211 32.000 0.00 0.00 0.00 4.69
535 536 9.458374 AAATTTCTAAATGTACACTTTTCACCG 57.542 29.630 0.00 0.00 0.00 4.94
563 564 9.883142 TTTTTACTCCATTTCACAATTTGTTCT 57.117 25.926 0.00 0.00 0.00 3.01
594 595 3.444742 TGGTGGCTTGCATCTTTCTAATG 59.555 43.478 0.00 0.00 0.00 1.90
595 596 3.700538 TGGTGGCTTGCATCTTTCTAAT 58.299 40.909 0.00 0.00 0.00 1.73
596 597 3.153369 TGGTGGCTTGCATCTTTCTAA 57.847 42.857 0.00 0.00 0.00 2.10
597 598 2.877097 TGGTGGCTTGCATCTTTCTA 57.123 45.000 0.00 0.00 0.00 2.10
598 599 2.097825 GATGGTGGCTTGCATCTTTCT 58.902 47.619 0.00 0.00 0.00 2.52
599 600 2.097825 AGATGGTGGCTTGCATCTTTC 58.902 47.619 0.00 0.00 31.04 2.62
600 601 2.097825 GAGATGGTGGCTTGCATCTTT 58.902 47.619 0.00 0.00 34.87 2.52
601 602 1.284198 AGAGATGGTGGCTTGCATCTT 59.716 47.619 0.00 0.00 34.87 2.40
602 603 0.917533 AGAGATGGTGGCTTGCATCT 59.082 50.000 0.00 0.00 37.14 2.90
603 604 1.307097 GAGAGATGGTGGCTTGCATC 58.693 55.000 0.00 0.00 0.00 3.91
604 605 0.106819 GGAGAGATGGTGGCTTGCAT 60.107 55.000 0.00 0.00 0.00 3.96
605 606 1.203441 AGGAGAGATGGTGGCTTGCA 61.203 55.000 0.00 0.00 0.00 4.08
606 607 0.463474 GAGGAGAGATGGTGGCTTGC 60.463 60.000 0.00 0.00 0.00 4.01
607 608 1.202330 AGAGGAGAGATGGTGGCTTG 58.798 55.000 0.00 0.00 0.00 4.01
608 609 1.963985 AAGAGGAGAGATGGTGGCTT 58.036 50.000 0.00 0.00 0.00 4.35
609 610 1.963985 AAAGAGGAGAGATGGTGGCT 58.036 50.000 0.00 0.00 0.00 4.75
610 611 3.914426 TTAAAGAGGAGAGATGGTGGC 57.086 47.619 0.00 0.00 0.00 5.01
611 612 6.292150 GGTAATTAAAGAGGAGAGATGGTGG 58.708 44.000 0.00 0.00 0.00 4.61
612 613 6.126768 TGGGTAATTAAAGAGGAGAGATGGTG 60.127 42.308 0.00 0.00 0.00 4.17
613 614 5.970640 TGGGTAATTAAAGAGGAGAGATGGT 59.029 40.000 0.00 0.00 0.00 3.55
614 615 6.500589 TGGGTAATTAAAGAGGAGAGATGG 57.499 41.667 0.00 0.00 0.00 3.51
615 616 5.994668 GCTGGGTAATTAAAGAGGAGAGATG 59.005 44.000 0.00 0.00 0.00 2.90
616 617 5.072464 GGCTGGGTAATTAAAGAGGAGAGAT 59.928 44.000 0.00 0.00 0.00 2.75
617 618 4.409247 GGCTGGGTAATTAAAGAGGAGAGA 59.591 45.833 0.00 0.00 0.00 3.10
618 619 4.410555 AGGCTGGGTAATTAAAGAGGAGAG 59.589 45.833 0.00 0.00 0.00 3.20
619 620 4.371681 AGGCTGGGTAATTAAAGAGGAGA 58.628 43.478 0.00 0.00 0.00 3.71
620 621 4.445019 GGAGGCTGGGTAATTAAAGAGGAG 60.445 50.000 0.00 0.00 0.00 3.69
621 622 3.458487 GGAGGCTGGGTAATTAAAGAGGA 59.542 47.826 0.00 0.00 0.00 3.71
622 623 3.202151 TGGAGGCTGGGTAATTAAAGAGG 59.798 47.826 0.00 0.00 0.00 3.69
623 624 4.503714 TGGAGGCTGGGTAATTAAAGAG 57.496 45.455 0.00 0.00 0.00 2.85
624 625 4.938575 TTGGAGGCTGGGTAATTAAAGA 57.061 40.909 0.00 0.00 0.00 2.52
625 626 5.200483 TCATTGGAGGCTGGGTAATTAAAG 58.800 41.667 0.00 0.00 0.00 1.85
626 627 5.199982 TCATTGGAGGCTGGGTAATTAAA 57.800 39.130 0.00 0.00 0.00 1.52
627 628 4.229582 ACTCATTGGAGGCTGGGTAATTAA 59.770 41.667 0.00 0.00 45.81 1.40
628 629 3.785887 ACTCATTGGAGGCTGGGTAATTA 59.214 43.478 0.00 0.00 45.81 1.40
629 630 2.582636 ACTCATTGGAGGCTGGGTAATT 59.417 45.455 0.00 0.00 45.81 1.40
630 631 2.208872 ACTCATTGGAGGCTGGGTAAT 58.791 47.619 0.00 0.00 45.81 1.89
631 632 1.668826 ACTCATTGGAGGCTGGGTAA 58.331 50.000 0.00 0.00 45.81 2.85
632 633 1.668826 AACTCATTGGAGGCTGGGTA 58.331 50.000 0.00 0.00 45.81 3.69
633 634 1.668826 TAACTCATTGGAGGCTGGGT 58.331 50.000 0.00 0.00 45.81 4.51
634 635 2.025887 ACTTAACTCATTGGAGGCTGGG 60.026 50.000 0.00 0.00 45.81 4.45
635 636 3.012518 CACTTAACTCATTGGAGGCTGG 58.987 50.000 0.00 0.00 45.81 4.85
636 637 2.421424 GCACTTAACTCATTGGAGGCTG 59.579 50.000 0.00 0.00 45.81 4.85
637 638 2.040278 TGCACTTAACTCATTGGAGGCT 59.960 45.455 0.00 0.00 45.81 4.58
638 639 2.436417 TGCACTTAACTCATTGGAGGC 58.564 47.619 0.00 0.00 45.81 4.70
639 640 8.450578 TTTATATGCACTTAACTCATTGGAGG 57.549 34.615 0.00 0.00 45.81 4.30
682 683 9.658799 CGGTAATCAAGACCAATATCATTCTAT 57.341 33.333 0.00 0.00 36.72 1.98
683 684 8.647796 ACGGTAATCAAGACCAATATCATTCTA 58.352 33.333 0.00 0.00 36.72 2.10
684 685 7.442364 CACGGTAATCAAGACCAATATCATTCT 59.558 37.037 0.00 0.00 36.72 2.40
685 686 7.226720 ACACGGTAATCAAGACCAATATCATTC 59.773 37.037 0.00 0.00 36.72 2.67
686 687 7.012327 CACACGGTAATCAAGACCAATATCATT 59.988 37.037 0.00 0.00 36.72 2.57
687 688 6.483307 CACACGGTAATCAAGACCAATATCAT 59.517 38.462 0.00 0.00 36.72 2.45
688 689 5.815222 CACACGGTAATCAAGACCAATATCA 59.185 40.000 0.00 0.00 36.72 2.15
689 690 6.046593 TCACACGGTAATCAAGACCAATATC 58.953 40.000 0.00 0.00 36.72 1.63
690 691 5.984725 TCACACGGTAATCAAGACCAATAT 58.015 37.500 0.00 0.00 36.72 1.28
691 692 5.408880 TCACACGGTAATCAAGACCAATA 57.591 39.130 0.00 0.00 36.72 1.90
692 693 4.280436 TCACACGGTAATCAAGACCAAT 57.720 40.909 0.00 0.00 36.72 3.16
693 694 3.755112 TCACACGGTAATCAAGACCAA 57.245 42.857 0.00 0.00 36.72 3.67
694 695 3.259625 TCATCACACGGTAATCAAGACCA 59.740 43.478 0.00 0.00 36.72 4.02
695 696 3.857052 TCATCACACGGTAATCAAGACC 58.143 45.455 0.00 0.00 0.00 3.85
696 697 4.744570 TCTCATCACACGGTAATCAAGAC 58.255 43.478 0.00 0.00 0.00 3.01
697 698 4.705023 TCTCTCATCACACGGTAATCAAGA 59.295 41.667 0.00 0.00 0.00 3.02
698 699 4.998788 TCTCTCATCACACGGTAATCAAG 58.001 43.478 0.00 0.00 0.00 3.02
699 700 5.400066 TTCTCTCATCACACGGTAATCAA 57.600 39.130 0.00 0.00 0.00 2.57
700 701 5.047306 AGTTTCTCTCATCACACGGTAATCA 60.047 40.000 0.00 0.00 0.00 2.57
701 702 5.411781 AGTTTCTCTCATCACACGGTAATC 58.588 41.667 0.00 0.00 0.00 1.75
702 703 5.407407 AGTTTCTCTCATCACACGGTAAT 57.593 39.130 0.00 0.00 0.00 1.89
703 704 4.866508 AGTTTCTCTCATCACACGGTAA 57.133 40.909 0.00 0.00 0.00 2.85
704 705 6.525578 AATAGTTTCTCTCATCACACGGTA 57.474 37.500 0.00 0.00 0.00 4.02
705 706 5.407407 AATAGTTTCTCTCATCACACGGT 57.593 39.130 0.00 0.00 0.00 4.83
706 707 6.727824 AAAATAGTTTCTCTCATCACACGG 57.272 37.500 0.00 0.00 0.00 4.94
716 717 9.657419 CCCAATGCATTTTAAAATAGTTTCTCT 57.343 29.630 9.83 0.00 0.00 3.10
717 718 9.651913 TCCCAATGCATTTTAAAATAGTTTCTC 57.348 29.630 9.83 0.00 0.00 2.87
730 731 8.980596 TGTATTTCTATCTTCCCAATGCATTTT 58.019 29.630 9.83 0.00 0.00 1.82
731 732 8.416329 GTGTATTTCTATCTTCCCAATGCATTT 58.584 33.333 9.83 0.00 0.00 2.32
732 733 7.781693 AGTGTATTTCTATCTTCCCAATGCATT 59.218 33.333 5.99 5.99 0.00 3.56
733 734 7.293073 AGTGTATTTCTATCTTCCCAATGCAT 58.707 34.615 0.00 0.00 0.00 3.96
734 735 6.662755 AGTGTATTTCTATCTTCCCAATGCA 58.337 36.000 0.00 0.00 0.00 3.96
735 736 7.573968 AAGTGTATTTCTATCTTCCCAATGC 57.426 36.000 0.00 0.00 0.00 3.56
737 738 9.981460 AGAAAAGTGTATTTCTATCTTCCCAAT 57.019 29.630 0.68 0.00 45.39 3.16
779 780 9.912634 CATTTGGTGAAGAATGTACATTTAAGT 57.087 29.630 21.63 8.03 0.00 2.24
780 781 9.357652 CCATTTGGTGAAGAATGTACATTTAAG 57.642 33.333 21.63 3.32 32.65 1.85
781 782 9.083422 TCCATTTGGTGAAGAATGTACATTTAA 57.917 29.630 21.63 6.04 36.34 1.52
782 783 8.642935 TCCATTTGGTGAAGAATGTACATTTA 57.357 30.769 21.63 7.04 36.34 1.40
783 784 7.451255 TCTCCATTTGGTGAAGAATGTACATTT 59.549 33.333 21.63 7.51 35.05 2.32
784 785 6.947733 TCTCCATTTGGTGAAGAATGTACATT 59.052 34.615 20.93 20.93 35.05 2.71
785 786 6.484288 TCTCCATTTGGTGAAGAATGTACAT 58.516 36.000 1.41 1.41 35.05 2.29
786 787 5.875224 TCTCCATTTGGTGAAGAATGTACA 58.125 37.500 0.00 0.00 35.05 2.90
787 788 6.173339 TCTCTCCATTTGGTGAAGAATGTAC 58.827 40.000 3.23 0.00 37.27 2.90
788 789 6.013379 ACTCTCTCCATTTGGTGAAGAATGTA 60.013 38.462 13.13 0.00 37.27 2.29
789 790 5.222007 ACTCTCTCCATTTGGTGAAGAATGT 60.222 40.000 13.13 3.54 37.27 2.71
790 791 5.251764 ACTCTCTCCATTTGGTGAAGAATG 58.748 41.667 13.13 0.00 37.27 2.67
791 792 5.511386 ACTCTCTCCATTTGGTGAAGAAT 57.489 39.130 13.13 0.00 37.27 2.40
792 793 4.982241 ACTCTCTCCATTTGGTGAAGAA 57.018 40.909 13.13 0.88 37.27 2.52
793 794 7.921041 ATATACTCTCTCCATTTGGTGAAGA 57.079 36.000 13.13 7.49 37.27 2.87
794 795 8.970859 AAATATACTCTCTCCATTTGGTGAAG 57.029 34.615 3.23 6.22 37.27 3.02
795 796 8.772250 AGAAATATACTCTCTCCATTTGGTGAA 58.228 33.333 3.23 0.00 37.27 3.18
796 797 8.324191 AGAAATATACTCTCTCCATTTGGTGA 57.676 34.615 1.74 1.74 36.41 4.02
797 798 8.970859 AAGAAATATACTCTCTCCATTTGGTG 57.029 34.615 0.00 0.00 36.34 4.17
798 799 9.981460 AAAAGAAATATACTCTCTCCATTTGGT 57.019 29.630 0.00 0.00 36.34 3.67
817 818 8.836413 CGCCTAAACTATCCATGATAAAAGAAA 58.164 33.333 0.00 0.00 0.00 2.52
818 819 7.041372 GCGCCTAAACTATCCATGATAAAAGAA 60.041 37.037 0.00 0.00 0.00 2.52
819 820 6.426937 GCGCCTAAACTATCCATGATAAAAGA 59.573 38.462 0.00 0.00 0.00 2.52
820 821 6.428159 AGCGCCTAAACTATCCATGATAAAAG 59.572 38.462 2.29 0.00 0.00 2.27
821 822 6.296026 AGCGCCTAAACTATCCATGATAAAA 58.704 36.000 2.29 0.00 0.00 1.52
822 823 5.865085 AGCGCCTAAACTATCCATGATAAA 58.135 37.500 2.29 0.00 0.00 1.40
823 824 5.483685 AGCGCCTAAACTATCCATGATAA 57.516 39.130 2.29 0.00 0.00 1.75
824 825 5.237815 CAAGCGCCTAAACTATCCATGATA 58.762 41.667 2.29 0.00 0.00 2.15
825 826 4.067896 CAAGCGCCTAAACTATCCATGAT 58.932 43.478 2.29 0.00 0.00 2.45
826 827 3.466836 CAAGCGCCTAAACTATCCATGA 58.533 45.455 2.29 0.00 0.00 3.07
827 828 2.031682 GCAAGCGCCTAAACTATCCATG 60.032 50.000 2.29 0.00 0.00 3.66
828 829 2.222027 GCAAGCGCCTAAACTATCCAT 58.778 47.619 2.29 0.00 0.00 3.41
829 830 1.663695 GCAAGCGCCTAAACTATCCA 58.336 50.000 2.29 0.00 0.00 3.41
830 831 0.582005 CGCAAGCGCCTAAACTATCC 59.418 55.000 2.29 0.00 33.11 2.59
831 832 1.287425 ACGCAAGCGCCTAAACTATC 58.713 50.000 15.09 0.00 44.19 2.08
832 833 1.734163 AACGCAAGCGCCTAAACTAT 58.266 45.000 15.09 0.00 44.19 2.12
833 834 1.195900 CAAACGCAAGCGCCTAAACTA 59.804 47.619 15.09 0.00 44.19 2.24
834 835 0.040425 CAAACGCAAGCGCCTAAACT 60.040 50.000 15.09 0.00 44.19 2.66
835 836 0.317519 ACAAACGCAAGCGCCTAAAC 60.318 50.000 15.09 0.00 44.19 2.01
836 837 1.069771 GTACAAACGCAAGCGCCTAAA 60.070 47.619 15.09 0.00 44.19 1.85
837 838 0.513820 GTACAAACGCAAGCGCCTAA 59.486 50.000 15.09 0.00 44.19 2.69
838 839 0.320073 AGTACAAACGCAAGCGCCTA 60.320 50.000 15.09 0.00 44.19 3.93
839 840 1.597027 AGTACAAACGCAAGCGCCT 60.597 52.632 15.09 0.00 44.19 5.52
840 841 1.440353 CAGTACAAACGCAAGCGCC 60.440 57.895 15.09 0.00 44.19 6.53
841 842 0.165944 ATCAGTACAAACGCAAGCGC 59.834 50.000 15.09 0.00 44.19 5.92
842 843 1.194547 ACATCAGTACAAACGCAAGCG 59.805 47.619 13.50 13.50 46.03 4.68
843 844 2.969443 ACATCAGTACAAACGCAAGC 57.031 45.000 0.00 0.00 45.62 4.01
845 846 9.731819 TTTTAATTAACATCAGTACAAACGCAA 57.268 25.926 0.00 0.00 0.00 4.85
846 847 9.388346 CTTTTAATTAACATCAGTACAAACGCA 57.612 29.630 0.00 0.00 0.00 5.24
847 848 9.601971 TCTTTTAATTAACATCAGTACAAACGC 57.398 29.630 0.00 0.00 0.00 4.84
864 865 9.358872 GCCATCGATTTTCTTCTTCTTTTAATT 57.641 29.630 0.00 0.00 0.00 1.40
865 866 7.976175 GGCCATCGATTTTCTTCTTCTTTTAAT 59.024 33.333 0.00 0.00 0.00 1.40
866 867 7.312899 GGCCATCGATTTTCTTCTTCTTTTAA 58.687 34.615 0.00 0.00 0.00 1.52
867 868 6.127730 GGGCCATCGATTTTCTTCTTCTTTTA 60.128 38.462 4.39 0.00 0.00 1.52
868 869 5.336770 GGGCCATCGATTTTCTTCTTCTTTT 60.337 40.000 4.39 0.00 0.00 2.27
869 870 4.158579 GGGCCATCGATTTTCTTCTTCTTT 59.841 41.667 4.39 0.00 0.00 2.52
870 871 3.696548 GGGCCATCGATTTTCTTCTTCTT 59.303 43.478 4.39 0.00 0.00 2.52
871 872 3.282885 GGGCCATCGATTTTCTTCTTCT 58.717 45.455 4.39 0.00 0.00 2.85
872 873 2.032178 CGGGCCATCGATTTTCTTCTTC 59.968 50.000 4.39 0.00 0.00 2.87
873 874 2.017049 CGGGCCATCGATTTTCTTCTT 58.983 47.619 4.39 0.00 0.00 2.52
874 875 1.668419 CGGGCCATCGATTTTCTTCT 58.332 50.000 4.39 0.00 0.00 2.85
875 876 0.029433 GCGGGCCATCGATTTTCTTC 59.971 55.000 4.39 0.00 0.00 2.87
876 877 0.679640 TGCGGGCCATCGATTTTCTT 60.680 50.000 4.39 0.00 0.00 2.52
877 878 1.077787 TGCGGGCCATCGATTTTCT 60.078 52.632 4.39 0.00 0.00 2.52
878 879 1.064134 GTGCGGGCCATCGATTTTC 59.936 57.895 4.39 0.00 0.00 2.29
879 880 1.677300 TGTGCGGGCCATCGATTTT 60.677 52.632 4.39 0.00 0.00 1.82
880 881 2.045438 TGTGCGGGCCATCGATTT 60.045 55.556 4.39 0.00 0.00 2.17
881 882 2.824041 GTGTGCGGGCCATCGATT 60.824 61.111 4.39 0.00 0.00 3.34
882 883 3.620419 TTGTGTGCGGGCCATCGAT 62.620 57.895 4.39 0.00 0.00 3.59
883 884 4.321966 TTGTGTGCGGGCCATCGA 62.322 61.111 4.39 0.00 0.00 3.59
884 885 3.803082 CTTGTGTGCGGGCCATCG 61.803 66.667 4.39 0.00 0.00 3.84
885 886 4.120331 GCTTGTGTGCGGGCCATC 62.120 66.667 4.39 0.00 0.00 3.51
890 891 2.281761 AAGAGGCTTGTGTGCGGG 60.282 61.111 0.00 0.00 0.00 6.13
928 932 2.600867 GCGAAATCTCTCGAAGGAGTTG 59.399 50.000 5.03 1.01 41.44 3.16
929 933 2.732597 CGCGAAATCTCTCGAAGGAGTT 60.733 50.000 0.00 1.34 41.44 3.01
930 934 1.202200 CGCGAAATCTCTCGAAGGAGT 60.202 52.381 0.00 0.00 41.44 3.85
931 935 1.471964 CGCGAAATCTCTCGAAGGAG 58.528 55.000 0.00 0.00 41.44 3.69
1273 1285 1.270094 ACACGTCGAGAGGCAATTTCA 60.270 47.619 0.00 0.00 33.27 2.69
1382 1395 4.022155 ACGAGTCTCTCAAAACTAAGACCC 60.022 45.833 0.00 0.00 39.13 4.46
1386 1399 4.918583 GTCCACGAGTCTCTCAAAACTAAG 59.081 45.833 0.00 0.00 0.00 2.18
1406 1419 2.262423 ACTTCAAGCCTTCACAGTCC 57.738 50.000 0.00 0.00 0.00 3.85
1446 1459 9.899226 TCATCAGTACAAACGAATATCAGATAG 57.101 33.333 0.00 0.00 0.00 2.08
1471 1484 1.936547 GTTGTCAGAGATGCCCGATTC 59.063 52.381 0.00 0.00 0.00 2.52
1475 1488 2.477825 CATAGTTGTCAGAGATGCCCG 58.522 52.381 0.00 0.00 0.00 6.13
1575 1588 7.176165 TCTCAAGTTGATTCAATTTCAGCTCAT 59.824 33.333 5.91 0.00 34.11 2.90
1585 1598 9.856488 CAATCTCAATTCTCAAGTTGATTCAAT 57.144 29.630 5.91 2.87 34.18 2.57
1586 1599 8.853126 ACAATCTCAATTCTCAAGTTGATTCAA 58.147 29.630 5.91 0.00 34.18 2.69
1587 1600 8.294577 CACAATCTCAATTCTCAAGTTGATTCA 58.705 33.333 5.91 0.00 34.18 2.57
1646 1659 0.671251 CTCACGCTATCCTCTCCACC 59.329 60.000 0.00 0.00 0.00 4.61
1648 1661 0.551396 TCCTCACGCTATCCTCTCCA 59.449 55.000 0.00 0.00 0.00 3.86
1649 1662 1.243902 CTCCTCACGCTATCCTCTCC 58.756 60.000 0.00 0.00 0.00 3.71
1706 1719 3.193614 CGCTCGCATGCTCAGCTT 61.194 61.111 26.79 0.00 0.00 3.74
1721 1734 5.963586 GGATGCTACACAACTAAAATAACGC 59.036 40.000 0.00 0.00 0.00 4.84
1723 1736 7.385778 TGGGATGCTACACAACTAAAATAAC 57.614 36.000 0.00 0.00 0.00 1.89
1788 1801 1.001815 GGCGCTTCAGTTGCTTTAACA 60.002 47.619 7.64 0.00 41.88 2.41
1806 1819 1.819905 GGAGGTGCTAGTCAGAGGC 59.180 63.158 0.00 0.00 0.00 4.70
1863 1876 1.615392 CCAGGTGCTCAAGGAAAAAGG 59.385 52.381 0.00 0.00 0.00 3.11
1907 1920 3.010584 ACCATGTTATTTCCACTCAGGCT 59.989 43.478 0.00 0.00 37.29 4.58
2015 2029 7.306399 GCATGCTATTTACAAATGAATGAGCAC 60.306 37.037 11.37 0.00 39.96 4.40
2163 2177 3.567797 GAAGAGATGCCACCGCGC 61.568 66.667 0.00 0.00 38.08 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.