Multiple sequence alignment - TraesCS5A01G132300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G132300 chr5A 100.000 7583 0 0 1 7583 298810245 298802663 0.000000e+00 14004.0
1 TraesCS5A01G132300 chr5A 98.032 813 12 3 1 812 400783837 400784646 0.000000e+00 1410.0
2 TraesCS5A01G132300 chr5A 95.556 90 4 0 5585 5674 600439840 600439751 2.210000e-30 145.0
3 TraesCS5A01G132300 chr5D 95.218 4224 134 22 3417 7583 223959332 223955120 0.000000e+00 6619.0
4 TraesCS5A01G132300 chr5D 95.456 2487 80 13 872 3332 223961811 223959332 0.000000e+00 3936.0
5 TraesCS5A01G132300 chr5D 97.849 93 0 2 3332 3424 477403413 477403323 7.880000e-35 159.0
6 TraesCS5A01G132300 chr5D 90.323 93 7 2 5583 5674 481427197 481427106 3.720000e-23 121.0
7 TraesCS5A01G132300 chr5D 89.474 95 8 2 5583 5676 139440921 139441014 1.340000e-22 119.0
8 TraesCS5A01G132300 chr5B 96.223 3601 90 14 3492 7075 247254034 247257605 0.000000e+00 5854.0
9 TraesCS5A01G132300 chr5B 94.467 2476 94 18 872 3329 247251318 247253768 0.000000e+00 3773.0
10 TraesCS5A01G132300 chr5B 85.747 442 34 9 7170 7583 247257889 247258329 2.510000e-119 440.0
11 TraesCS5A01G132300 chr5B 96.935 261 8 0 3417 3677 247253771 247254031 9.030000e-119 438.0
12 TraesCS5A01G132300 chr5B 94.565 92 5 0 5583 5674 589999919 589999828 7.930000e-30 143.0
13 TraesCS5A01G132300 chr7A 98.032 813 13 2 1 812 697181328 697182138 0.000000e+00 1410.0
14 TraesCS5A01G132300 chr7A 97.663 813 16 2 1 812 697203938 697204748 0.000000e+00 1393.0
15 TraesCS5A01G132300 chr7A 93.069 101 7 0 2073 2173 498590381 498590281 1.700000e-31 148.0
16 TraesCS5A01G132300 chr7A 79.570 93 19 0 7270 7362 208551461 208551553 4.910000e-07 67.6
17 TraesCS5A01G132300 chr4B 98.032 813 13 2 1 812 658182891 658183701 0.000000e+00 1410.0
18 TraesCS5A01G132300 chr4B 85.816 423 28 10 7190 7583 13058751 13059170 3.270000e-113 420.0
19 TraesCS5A01G132300 chr4B 92.553 188 9 4 2167 2354 127472871 127473053 1.620000e-66 265.0
20 TraesCS5A01G132300 chr4B 95.000 100 2 3 3324 3423 221059798 221059702 3.660000e-33 154.0
21 TraesCS5A01G132300 chr4B 88.000 100 10 2 5583 5681 511163714 511163812 4.810000e-22 117.0
22 TraesCS5A01G132300 chr6A 97.786 813 15 2 1 812 459929355 459930165 0.000000e+00 1399.0
23 TraesCS5A01G132300 chr6A 97.826 92 2 0 3333 3424 438961866 438961775 7.880000e-35 159.0
24 TraesCS5A01G132300 chr6A 87.255 102 13 0 5573 5674 93798345 93798446 4.810000e-22 117.0
25 TraesCS5A01G132300 chr2B 97.549 816 17 2 1 815 521440351 521439538 0.000000e+00 1393.0
26 TraesCS5A01G132300 chr2B 96.829 820 21 3 1 817 251122181 251121364 0.000000e+00 1365.0
27 TraesCS5A01G132300 chr2B 95.050 101 5 0 3333 3433 653585433 653585333 7.880000e-35 159.0
28 TraesCS5A01G132300 chr2B 96.809 94 3 0 3333 3426 653585348 653585441 2.830000e-34 158.0
29 TraesCS5A01G132300 chr3A 97.417 813 18 2 1 812 424455955 424455145 0.000000e+00 1382.0
30 TraesCS5A01G132300 chr3A 94.118 102 3 2 3318 3419 365795406 365795504 1.320000e-32 152.0
31 TraesCS5A01G132300 chr3A 94.737 95 5 0 2073 2167 621323743 621323837 1.700000e-31 148.0
32 TraesCS5A01G132300 chr3A 90.526 95 7 2 5583 5676 470095773 470095680 2.870000e-24 124.0
33 TraesCS5A01G132300 chr3A 95.918 49 1 1 2353 2400 823688 823640 2.270000e-10 78.7
34 TraesCS5A01G132300 chr3A 92.308 52 2 2 2353 2404 6364081 6364032 1.060000e-08 73.1
35 TraesCS5A01G132300 chr1A 97.297 814 18 3 1 812 148261346 148262157 0.000000e+00 1378.0
36 TraesCS5A01G132300 chr4D 92.593 189 13 1 7395 7583 7202030 7202217 3.490000e-68 270.0
37 TraesCS5A01G132300 chr4D 92.513 187 10 3 2167 2353 91054193 91054375 1.620000e-66 265.0
38 TraesCS5A01G132300 chr4D 89.048 210 14 3 2153 2354 108856779 108856571 1.260000e-62 252.0
39 TraesCS5A01G132300 chr4D 88.119 101 9 3 5583 5681 414999567 414999666 4.810000e-22 117.0
40 TraesCS5A01G132300 chr4D 89.773 88 8 1 5588 5674 138406347 138406260 2.240000e-20 111.0
41 TraesCS5A01G132300 chr4D 88.172 93 10 1 5583 5674 138406265 138406357 8.040000e-20 110.0
42 TraesCS5A01G132300 chr2D 91.327 196 8 4 2167 2354 249891798 249891992 7.550000e-65 259.0
43 TraesCS5A01G132300 chr2D 92.632 95 7 0 2073 2167 367919886 367919980 3.690000e-28 137.0
44 TraesCS5A01G132300 chr2D 94.000 50 3 0 2350 2399 566997586 566997635 8.160000e-10 76.8
45 TraesCS5A01G132300 chr2A 91.327 196 8 4 2167 2354 310407134 310406940 7.550000e-65 259.0
46 TraesCS5A01G132300 chr2A 91.327 196 8 4 2167 2354 449271099 449270905 7.550000e-65 259.0
47 TraesCS5A01G132300 chr2A 93.617 94 6 0 2074 2167 763254999 763255092 2.850000e-29 141.0
48 TraesCS5A01G132300 chr2A 91.525 59 2 3 2341 2397 768471370 768471427 2.270000e-10 78.7
49 TraesCS5A01G132300 chr2A 89.474 57 4 2 2350 2406 5593327 5593381 3.800000e-08 71.3
50 TraesCS5A01G132300 chr7D 89.268 205 14 3 2156 2354 397569523 397569725 4.540000e-62 250.0
51 TraesCS5A01G132300 chr7D 93.103 87 6 0 5588 5674 336159773 336159859 2.220000e-25 128.0
52 TraesCS5A01G132300 chr3B 75.952 420 68 12 7190 7578 739072312 739072729 1.300000e-42 185.0
53 TraesCS5A01G132300 chr3B 90.426 94 9 0 5581 5674 821661342 821661249 2.870000e-24 124.0
54 TraesCS5A01G132300 chr1B 97.872 94 2 0 3333 3426 618002463 618002556 6.090000e-36 163.0
55 TraesCS5A01G132300 chr1B 89.286 112 11 1 2057 2167 501941596 501941707 1.030000e-28 139.0
56 TraesCS5A01G132300 chr1B 95.122 82 4 0 5583 5664 193283069 193283150 6.180000e-26 130.0
57 TraesCS5A01G132300 chr1D 95.833 96 3 1 3327 3421 394862506 394862601 3.660000e-33 154.0
58 TraesCS5A01G132300 chr1D 95.122 82 4 0 5583 5664 143955475 143955556 6.180000e-26 130.0
59 TraesCS5A01G132300 chr1D 87.156 109 12 2 5567 5674 476796794 476796687 1.030000e-23 122.0
60 TraesCS5A01G132300 chr1D 90.909 88 6 2 5588 5674 143955556 143955470 4.810000e-22 117.0
61 TraesCS5A01G132300 chr1D 88.172 93 8 3 5583 5674 34021998 34021908 2.890000e-19 108.0
62 TraesCS5A01G132300 chr1D 82.407 108 19 0 5570 5677 332929621 332929728 2.250000e-15 95.3
63 TraesCS5A01G132300 chr4A 95.745 94 4 0 2074 2167 477033210 477033303 1.320000e-32 152.0
64 TraesCS5A01G132300 chr4A 92.381 105 7 1 3333 3436 613419905 613420009 1.700000e-31 148.0
65 TraesCS5A01G132300 chr4A 87.736 106 8 5 5583 5685 683431882 683431779 1.340000e-22 119.0
66 TraesCS5A01G132300 chr6B 92.632 95 7 0 2073 2167 479843475 479843569 3.690000e-28 137.0
67 TraesCS5A01G132300 chr7B 89.796 98 10 0 5583 5680 310413156 310413059 7.990000e-25 126.0
68 TraesCS5A01G132300 chr7B 90.526 95 7 2 5583 5676 162120817 162120910 2.870000e-24 124.0
69 TraesCS5A01G132300 chr7B 92.157 51 4 0 2350 2400 205353260 205353310 1.060000e-08 73.1
70 TraesCS5A01G132300 chr3D 88.000 100 10 2 5583 5681 168584777 168584875 4.810000e-22 117.0
71 TraesCS5A01G132300 chr3D 86.916 107 10 4 5573 5677 601221856 601221752 4.810000e-22 117.0
72 TraesCS5A01G132300 chr3D 82.051 78 14 0 7285 7362 30264100 30264177 4.910000e-07 67.6
73 TraesCS5A01G132300 chr6D 86.667 105 12 2 5571 5674 94768023 94768126 1.730000e-21 115.0
74 TraesCS5A01G132300 chr6D 87.755 98 11 1 5583 5679 128910387 128910484 6.220000e-21 113.0
75 TraesCS5A01G132300 chr6D 88.172 93 9 2 5583 5674 363032625 363032534 8.040000e-20 110.0
76 TraesCS5A01G132300 chr6D 88.506 87 10 0 5588 5674 25626367 25626453 1.040000e-18 106.0
77 TraesCS5A01G132300 chr6D 88.372 86 10 0 5583 5668 78080178 78080263 3.740000e-18 104.0
78 TraesCS5A01G132300 chr6D 86.957 92 7 3 5583 5674 433900872 433900786 1.740000e-16 99.0
79 TraesCS5A01G132300 chr6D 87.209 86 9 2 5583 5667 157930411 157930495 6.260000e-16 97.1
80 TraesCS5A01G132300 chr6D 85.000 80 12 0 5578 5657 372431199 372431278 1.750000e-11 82.4
81 TraesCS5A01G132300 chr6D 95.918 49 2 0 2350 2398 8137966 8138014 6.310000e-11 80.5
82 TraesCS5A01G132300 chr6D 92.727 55 4 0 5622 5676 338696181 338696127 6.310000e-11 80.5
83 TraesCS5A01G132300 chr6D 95.349 43 2 0 5578 5620 166775073 166775115 1.370000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G132300 chr5A 298802663 298810245 7582 True 14004.00 14004 100.000 1 7583 1 chr5A.!!$R1 7582
1 TraesCS5A01G132300 chr5A 400783837 400784646 809 False 1410.00 1410 98.032 1 812 1 chr5A.!!$F1 811
2 TraesCS5A01G132300 chr5D 223955120 223961811 6691 True 5277.50 6619 95.337 872 7583 2 chr5D.!!$R3 6711
3 TraesCS5A01G132300 chr5B 247251318 247258329 7011 False 2626.25 5854 93.343 872 7583 4 chr5B.!!$F1 6711
4 TraesCS5A01G132300 chr7A 697181328 697182138 810 False 1410.00 1410 98.032 1 812 1 chr7A.!!$F2 811
5 TraesCS5A01G132300 chr7A 697203938 697204748 810 False 1393.00 1393 97.663 1 812 1 chr7A.!!$F3 811
6 TraesCS5A01G132300 chr4B 658182891 658183701 810 False 1410.00 1410 98.032 1 812 1 chr4B.!!$F4 811
7 TraesCS5A01G132300 chr6A 459929355 459930165 810 False 1399.00 1399 97.786 1 812 1 chr6A.!!$F2 811
8 TraesCS5A01G132300 chr2B 521439538 521440351 813 True 1393.00 1393 97.549 1 815 1 chr2B.!!$R2 814
9 TraesCS5A01G132300 chr2B 251121364 251122181 817 True 1365.00 1365 96.829 1 817 1 chr2B.!!$R1 816
10 TraesCS5A01G132300 chr3A 424455145 424455955 810 True 1382.00 1382 97.417 1 812 1 chr3A.!!$R3 811
11 TraesCS5A01G132300 chr1A 148261346 148262157 811 False 1378.00 1378 97.297 1 812 1 chr1A.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 850 0.169230 AACGCACAAAACTTCACGCA 59.831 45.000 0.00 0.00 0.00 5.24 F
861 863 0.248012 TCACGCATATTCCACACCGT 59.752 50.000 0.00 0.00 0.00 4.83 F
868 870 0.538118 TATTCCACACCGTAGCACCC 59.462 55.000 0.00 0.00 0.00 4.61 F
870 872 0.542467 TTCCACACCGTAGCACCCTA 60.542 55.000 0.00 0.00 0.00 3.53 F
1197 1201 0.797579 ACTACTCCTTCCCCTTCCCA 59.202 55.000 0.00 0.00 0.00 4.37 F
1569 1573 1.002033 CTCACACTGCAGAACTTTGCC 60.002 52.381 23.35 0.00 43.43 4.52 F
2273 2285 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46 F
2659 2687 1.684450 TCAACTCCTTCTGTACACGCA 59.316 47.619 0.00 0.00 0.00 5.24 F
3410 3439 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69 F
3414 3443 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20 F
5039 5264 2.603021 AGTCTGAGGGATATCGCATGT 58.397 47.619 20.64 1.23 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 2000 2.100584 AGACTCGAGCAAAGATAGCCTG 59.899 50.000 13.61 0.0 0.00 4.85 R
2858 2886 1.135915 CTCTGGAACCCTCATCTGTCG 59.864 57.143 0.00 0.0 0.00 4.35 R
2899 2927 9.965902 ACATGAACTGAATCTCCTAGTAAAATT 57.034 29.630 0.00 0.0 0.00 1.82 R
2931 2960 5.855740 AGCCCTTCTGTTAGTAGTATGTC 57.144 43.478 0.00 0.0 0.00 3.06 R
2942 2971 0.905337 ACCGCTCTAGCCCTTCTGTT 60.905 55.000 0.00 0.0 37.91 3.16 R
3400 3429 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.0 0.00 3.28 R
4016 4231 1.556451 GCCAATTCCTGAAAAGGGCAT 59.444 47.619 12.24 0.0 35.93 4.40 R
4151 4366 2.843730 TGCTGTAGGGCTTCATCCTTTA 59.156 45.455 0.00 0.0 35.92 1.85 R
4878 5103 0.034059 ACTGTCGGCTTCAGTTCTGG 59.966 55.000 5.79 0.0 42.50 3.86 R
5365 5590 1.425066 AGAACATGCCCTCCTGTGAAA 59.575 47.619 0.00 0.0 0.00 2.69 R
7038 7272 0.109319 CCAAACGCAGCCAACCATAC 60.109 55.000 0.00 0.0 0.00 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
508 510 2.758423 TCTGCGTATTCTTGGAGCTGTA 59.242 45.455 0.00 0.00 0.00 2.74
682 684 2.088709 AGGGAGAGGGGGATAGAGAGTA 60.089 54.545 0.00 0.00 0.00 2.59
721 723 1.548269 TGTGTGTCTGTGTGTGTGAGA 59.452 47.619 0.00 0.00 0.00 3.27
724 726 4.142049 TGTGTGTCTGTGTGTGTGAGAATA 60.142 41.667 0.00 0.00 0.00 1.75
783 785 8.804688 TGAACTTTTAAAATTAATGTGACCCG 57.195 30.769 0.09 0.00 0.00 5.28
784 786 8.414778 TGAACTTTTAAAATTAATGTGACCCGT 58.585 29.630 0.09 0.00 0.00 5.28
786 788 8.582433 ACTTTTAAAATTAATGTGACCCGTTG 57.418 30.769 0.09 0.00 0.00 4.10
787 789 7.170151 ACTTTTAAAATTAATGTGACCCGTTGC 59.830 33.333 0.09 0.00 0.00 4.17
788 790 4.592485 AAAATTAATGTGACCCGTTGCA 57.408 36.364 0.00 0.00 0.00 4.08
790 792 3.569250 ATTAATGTGACCCGTTGCAAC 57.431 42.857 19.89 19.89 0.00 4.17
791 793 2.264005 TAATGTGACCCGTTGCAACT 57.736 45.000 26.09 8.82 0.00 3.16
816 818 3.742369 CACGGGCGTTCTTCTAGTTTTTA 59.258 43.478 0.00 0.00 0.00 1.52
817 819 3.742882 ACGGGCGTTCTTCTAGTTTTTAC 59.257 43.478 0.00 0.00 0.00 2.01
819 821 4.143179 CGGGCGTTCTTCTAGTTTTTACAG 60.143 45.833 0.00 0.00 0.00 2.74
820 822 4.753610 GGGCGTTCTTCTAGTTTTTACAGT 59.246 41.667 0.00 0.00 0.00 3.55
821 823 5.237996 GGGCGTTCTTCTAGTTTTTACAGTT 59.762 40.000 0.00 0.00 0.00 3.16
822 824 6.238566 GGGCGTTCTTCTAGTTTTTACAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
823 825 7.041848 GGGCGTTCTTCTAGTTTTTACAGTTTA 60.042 37.037 0.00 0.00 0.00 2.01
824 826 7.795734 GGCGTTCTTCTAGTTTTTACAGTTTAC 59.204 37.037 0.00 0.00 0.00 2.01
825 827 7.795734 GCGTTCTTCTAGTTTTTACAGTTTACC 59.204 37.037 0.00 0.00 0.00 2.85
826 828 9.038803 CGTTCTTCTAGTTTTTACAGTTTACCT 57.961 33.333 0.00 0.00 0.00 3.08
832 834 9.683069 TCTAGTTTTTACAGTTTACCTCTAACG 57.317 33.333 0.00 0.00 0.00 3.18
833 835 7.182361 AGTTTTTACAGTTTACCTCTAACGC 57.818 36.000 0.00 0.00 0.00 4.84
834 836 6.762661 AGTTTTTACAGTTTACCTCTAACGCA 59.237 34.615 0.00 0.00 0.00 5.24
835 837 6.529463 TTTTACAGTTTACCTCTAACGCAC 57.471 37.500 0.00 0.00 0.00 5.34
836 838 3.738830 ACAGTTTACCTCTAACGCACA 57.261 42.857 0.00 0.00 0.00 4.57
837 839 4.062677 ACAGTTTACCTCTAACGCACAA 57.937 40.909 0.00 0.00 0.00 3.33
838 840 4.444536 ACAGTTTACCTCTAACGCACAAA 58.555 39.130 0.00 0.00 0.00 2.83
839 841 4.877251 ACAGTTTACCTCTAACGCACAAAA 59.123 37.500 0.00 0.00 0.00 2.44
840 842 5.202640 CAGTTTACCTCTAACGCACAAAAC 58.797 41.667 0.00 0.00 0.00 2.43
841 843 5.007332 CAGTTTACCTCTAACGCACAAAACT 59.993 40.000 0.00 0.00 36.61 2.66
842 844 5.587443 AGTTTACCTCTAACGCACAAAACTT 59.413 36.000 0.00 0.00 33.41 2.66
843 845 5.662211 TTACCTCTAACGCACAAAACTTC 57.338 39.130 0.00 0.00 0.00 3.01
844 846 3.537580 ACCTCTAACGCACAAAACTTCA 58.462 40.909 0.00 0.00 0.00 3.02
845 847 3.311596 ACCTCTAACGCACAAAACTTCAC 59.688 43.478 0.00 0.00 0.00 3.18
846 848 3.531982 CTCTAACGCACAAAACTTCACG 58.468 45.455 0.00 0.00 0.00 4.35
847 849 2.034076 CTAACGCACAAAACTTCACGC 58.966 47.619 0.00 0.00 0.00 5.34
848 850 0.169230 AACGCACAAAACTTCACGCA 59.831 45.000 0.00 0.00 0.00 5.24
849 851 0.380378 ACGCACAAAACTTCACGCAT 59.620 45.000 0.00 0.00 0.00 4.73
850 852 1.600013 ACGCACAAAACTTCACGCATA 59.400 42.857 0.00 0.00 0.00 3.14
851 853 2.225491 ACGCACAAAACTTCACGCATAT 59.775 40.909 0.00 0.00 0.00 1.78
852 854 3.233578 CGCACAAAACTTCACGCATATT 58.766 40.909 0.00 0.00 0.00 1.28
853 855 3.297979 CGCACAAAACTTCACGCATATTC 59.702 43.478 0.00 0.00 0.00 1.75
854 856 3.608073 GCACAAAACTTCACGCATATTCC 59.392 43.478 0.00 0.00 0.00 3.01
855 857 4.793071 CACAAAACTTCACGCATATTCCA 58.207 39.130 0.00 0.00 0.00 3.53
856 858 4.616802 CACAAAACTTCACGCATATTCCAC 59.383 41.667 0.00 0.00 0.00 4.02
857 859 4.277174 ACAAAACTTCACGCATATTCCACA 59.723 37.500 0.00 0.00 0.00 4.17
858 860 4.419522 AAACTTCACGCATATTCCACAC 57.580 40.909 0.00 0.00 0.00 3.82
859 861 2.356135 ACTTCACGCATATTCCACACC 58.644 47.619 0.00 0.00 0.00 4.16
860 862 1.327460 CTTCACGCATATTCCACACCG 59.673 52.381 0.00 0.00 0.00 4.94
861 863 0.248012 TCACGCATATTCCACACCGT 59.752 50.000 0.00 0.00 0.00 4.83
862 864 1.477295 TCACGCATATTCCACACCGTA 59.523 47.619 0.00 0.00 0.00 4.02
863 865 1.858458 CACGCATATTCCACACCGTAG 59.142 52.381 0.00 0.00 0.00 3.51
864 866 0.859232 CGCATATTCCACACCGTAGC 59.141 55.000 0.00 0.00 0.00 3.58
865 867 1.804746 CGCATATTCCACACCGTAGCA 60.805 52.381 0.00 0.00 0.00 3.49
866 868 1.597663 GCATATTCCACACCGTAGCAC 59.402 52.381 0.00 0.00 0.00 4.40
867 869 2.210116 CATATTCCACACCGTAGCACC 58.790 52.381 0.00 0.00 0.00 5.01
868 870 0.538118 TATTCCACACCGTAGCACCC 59.462 55.000 0.00 0.00 0.00 4.61
869 871 1.198759 ATTCCACACCGTAGCACCCT 61.199 55.000 0.00 0.00 0.00 4.34
870 872 0.542467 TTCCACACCGTAGCACCCTA 60.542 55.000 0.00 0.00 0.00 3.53
902 904 4.460529 GTTCCCAAACGAACCGGA 57.539 55.556 9.46 0.00 36.87 5.14
1074 1078 1.543429 CCTCACCACAACCTCCAACTC 60.543 57.143 0.00 0.00 0.00 3.01
1197 1201 0.797579 ACTACTCCTTCCCCTTCCCA 59.202 55.000 0.00 0.00 0.00 4.37
1569 1573 1.002033 CTCACACTGCAGAACTTTGCC 60.002 52.381 23.35 0.00 43.43 4.52
1615 1619 2.681848 GGCATCATTCAGGTCTGTTCAG 59.318 50.000 0.00 0.00 0.00 3.02
1718 1722 6.096141 TCACTTAGCACAAATTTGGTTGAAGA 59.904 34.615 21.74 7.55 32.59 2.87
1802 1806 4.115516 GCAAGAAAGCATCGTCTCATAGA 58.884 43.478 0.00 0.00 0.00 1.98
1811 1815 4.366586 CATCGTCTCATAGACTGTTGCAT 58.633 43.478 5.59 0.00 42.92 3.96
1903 1910 4.940463 TGTATTGTACTGGTAGATTCGGC 58.060 43.478 0.00 0.00 0.00 5.54
1908 1915 4.466827 TGTACTGGTAGATTCGGCTCATA 58.533 43.478 0.00 0.00 0.00 2.15
1961 1968 3.634910 GGGCCTTTTTAGTTCACAGACAA 59.365 43.478 0.84 0.00 0.00 3.18
1968 1975 9.533253 CCTTTTTAGTTCACAGACAAATCAATT 57.467 29.630 0.00 0.00 0.00 2.32
1993 2000 6.377146 TGGCAGAAAATGGTTAATAAGACTCC 59.623 38.462 0.00 0.00 0.00 3.85
2006 2013 2.998316 AGACTCCAGGCTATCTTTGC 57.002 50.000 0.00 0.00 0.00 3.68
2169 2176 7.877003 ACATCCGTATCTAGACAAATCTACAG 58.123 38.462 0.00 0.00 36.29 2.74
2233 2245 5.190528 AGAGCTGAAACCCATAAGAATCTCA 59.809 40.000 0.00 0.00 0.00 3.27
2234 2246 6.011122 AGCTGAAACCCATAAGAATCTCAT 57.989 37.500 0.00 0.00 0.00 2.90
2273 2285 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
2288 2300 2.141011 CTTCCATGCACCCCTGTCCA 62.141 60.000 0.00 0.00 0.00 4.02
2303 2315 3.560025 CCTGTCCATGGCTAGTTCTTTGT 60.560 47.826 6.96 0.00 0.00 2.83
2375 2387 8.963725 TCGGTATCTAGACAAATCTAAGACAAA 58.036 33.333 0.00 0.00 36.98 2.83
2557 2584 7.704789 ATTGAAGATTGAAAACTGCTTTGAC 57.295 32.000 0.00 0.00 0.00 3.18
2619 2647 5.590530 AGGAGCTGCGAATAGGATATTAG 57.409 43.478 0.00 0.00 0.00 1.73
2656 2684 4.810191 ATCCTCAACTCCTTCTGTACAC 57.190 45.455 0.00 0.00 0.00 2.90
2659 2687 1.684450 TCAACTCCTTCTGTACACGCA 59.316 47.619 0.00 0.00 0.00 5.24
2696 2724 8.585881 AGTTGTATCGCTGATATTTGGTAGTAT 58.414 33.333 2.41 0.00 0.00 2.12
2760 2788 9.760077 ATTGAAGATATTTGATGAAATGCTTCC 57.240 29.630 20.96 11.23 39.95 3.46
2856 2884 4.024048 AGGAGTTCAAACGTGCTTAATGTG 60.024 41.667 0.00 0.00 0.00 3.21
2858 2886 2.697431 TCAAACGTGCTTAATGTGGC 57.303 45.000 0.00 0.00 0.00 5.01
2899 2927 5.827797 AGAGAGTGGCAAAACTTTCATGTTA 59.172 36.000 0.00 0.00 34.53 2.41
2931 2960 3.944015 GGAGATTCAGTTCATGTCCTTGG 59.056 47.826 0.00 0.00 32.40 3.61
2940 2969 5.812642 CAGTTCATGTCCTTGGACATACTAC 59.187 44.000 28.36 24.02 43.24 2.73
2941 2970 5.721960 AGTTCATGTCCTTGGACATACTACT 59.278 40.000 28.36 25.30 43.24 2.57
2942 2971 6.895756 AGTTCATGTCCTTGGACATACTACTA 59.104 38.462 28.36 11.82 43.24 1.82
2995 3024 5.049198 TCAGACACATCAATCAGCAGAAAAC 60.049 40.000 0.00 0.00 0.00 2.43
2996 3025 4.083643 AGACACATCAATCAGCAGAAAACG 60.084 41.667 0.00 0.00 0.00 3.60
3084 3113 5.640158 TTCTTACCCAGAAGTTCTCCAAA 57.360 39.130 1.26 0.00 36.51 3.28
3098 3127 3.631250 TCTCCAAAACTTGAGGTTTGCT 58.369 40.909 14.52 0.00 46.18 3.91
3331 3360 6.240894 TGAAAGGAGCAATGAGTAGAATGTT 58.759 36.000 0.00 0.00 0.00 2.71
3332 3361 6.716628 TGAAAGGAGCAATGAGTAGAATGTTT 59.283 34.615 0.00 0.00 0.00 2.83
3333 3362 7.882791 TGAAAGGAGCAATGAGTAGAATGTTTA 59.117 33.333 0.00 0.00 0.00 2.01
3334 3363 7.617041 AAGGAGCAATGAGTAGAATGTTTAC 57.383 36.000 0.00 0.00 0.00 2.01
3335 3364 6.951971 AGGAGCAATGAGTAGAATGTTTACT 58.048 36.000 0.00 0.00 34.19 2.24
3336 3365 7.044798 AGGAGCAATGAGTAGAATGTTTACTC 58.955 38.462 5.66 5.66 44.61 2.59
3337 3366 6.258947 GGAGCAATGAGTAGAATGTTTACTCC 59.741 42.308 9.25 0.00 44.04 3.85
3338 3367 6.116126 AGCAATGAGTAGAATGTTTACTCCC 58.884 40.000 9.25 0.00 44.04 4.30
3339 3368 6.069963 AGCAATGAGTAGAATGTTTACTCCCT 60.070 38.462 9.25 0.45 44.04 4.20
3340 3369 6.258947 GCAATGAGTAGAATGTTTACTCCCTC 59.741 42.308 9.25 0.00 44.04 4.30
3341 3370 5.934402 TGAGTAGAATGTTTACTCCCTCC 57.066 43.478 9.25 0.00 44.04 4.30
3342 3371 4.401519 TGAGTAGAATGTTTACTCCCTCCG 59.598 45.833 9.25 0.00 44.04 4.63
3343 3372 4.351127 AGTAGAATGTTTACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
3344 3373 4.776308 AGTAGAATGTTTACTCCCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
3345 3374 4.635699 AGAATGTTTACTCCCTCCGTTT 57.364 40.909 0.00 0.00 0.00 3.60
3346 3375 4.576879 AGAATGTTTACTCCCTCCGTTTC 58.423 43.478 0.00 0.00 0.00 2.78
3347 3376 4.041198 AGAATGTTTACTCCCTCCGTTTCA 59.959 41.667 0.00 0.00 0.00 2.69
3348 3377 3.842007 TGTTTACTCCCTCCGTTTCAA 57.158 42.857 0.00 0.00 0.00 2.69
3349 3378 4.153673 TGTTTACTCCCTCCGTTTCAAA 57.846 40.909 0.00 0.00 0.00 2.69
3350 3379 4.721132 TGTTTACTCCCTCCGTTTCAAAT 58.279 39.130 0.00 0.00 0.00 2.32
3351 3380 5.134661 TGTTTACTCCCTCCGTTTCAAATT 58.865 37.500 0.00 0.00 0.00 1.82
3352 3381 6.297582 TGTTTACTCCCTCCGTTTCAAATTA 58.702 36.000 0.00 0.00 0.00 1.40
3353 3382 6.205270 TGTTTACTCCCTCCGTTTCAAATTAC 59.795 38.462 0.00 0.00 0.00 1.89
3354 3383 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
3355 3384 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
3356 3385 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
3357 3386 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
3358 3387 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
3359 3388 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
3360 3389 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
3361 3390 3.426191 TCCGTTTCAAATTACTCGTCGTG 59.574 43.478 0.00 0.00 0.00 4.35
3362 3391 3.422603 CCGTTTCAAATTACTCGTCGTGG 60.423 47.826 0.00 0.00 0.00 4.94
3363 3392 3.182972 CGTTTCAAATTACTCGTCGTGGT 59.817 43.478 0.00 0.00 0.00 4.16
3364 3393 4.318263 CGTTTCAAATTACTCGTCGTGGTT 60.318 41.667 0.00 0.00 0.00 3.67
3365 3394 5.504392 GTTTCAAATTACTCGTCGTGGTTT 58.496 37.500 0.00 0.00 0.00 3.27
3366 3395 5.738118 TTCAAATTACTCGTCGTGGTTTT 57.262 34.783 0.00 0.00 0.00 2.43
3367 3396 6.841443 TTCAAATTACTCGTCGTGGTTTTA 57.159 33.333 0.00 0.00 0.00 1.52
3368 3397 6.456447 TCAAATTACTCGTCGTGGTTTTAG 57.544 37.500 0.00 0.00 0.00 1.85
3369 3398 5.984926 TCAAATTACTCGTCGTGGTTTTAGT 59.015 36.000 0.00 0.00 0.00 2.24
3370 3399 6.479660 TCAAATTACTCGTCGTGGTTTTAGTT 59.520 34.615 0.00 0.00 0.00 2.24
3371 3400 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
3372 3401 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3373 3402 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3374 3403 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3375 3404 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3376 3405 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3377 3406 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3378 3407 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3379 3408 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3380 3409 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3393 3422 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3394 3423 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3395 3424 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3396 3425 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3397 3426 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3398 3427 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3399 3428 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3400 3429 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
3401 3430 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
3402 3431 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
3403 3432 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
3404 3433 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
3405 3434 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
3406 3435 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
3407 3436 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
3408 3437 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
3409 3438 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
3410 3439 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
3411 3440 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3412 3441 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3413 3442 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3414 3443 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3415 3444 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
3481 3510 6.676950 TGCCATTTGTTTTCACTGTGTATAG 58.323 36.000 7.79 0.00 0.00 1.31
3510 3539 2.672961 TGCGTGCTAACTGCTTATCT 57.327 45.000 0.00 0.00 43.37 1.98
3606 3635 7.042797 ACAACTTGTGTGAATGAAGCTTAAT 57.957 32.000 0.00 0.00 39.72 1.40
3607 3636 6.919662 ACAACTTGTGTGAATGAAGCTTAATG 59.080 34.615 0.00 0.00 39.72 1.90
3791 4006 7.417570 GGACGATAGAGTTATCAAGGGAGAAAA 60.418 40.741 0.00 0.00 36.30 2.29
3802 4017 9.989296 TTATCAAGGGAGAAAAATCCTGATTTA 57.011 29.630 5.60 0.00 39.88 1.40
4016 4231 5.473504 GGAATGTCTAACTTCCTTGCTTTCA 59.526 40.000 0.00 0.00 38.31 2.69
4032 4247 3.055602 GCTTTCATGCCCTTTTCAGGAAT 60.056 43.478 0.00 0.00 44.19 3.01
4059 4274 7.984050 TGGCTTTCTGAAAACAAACATATCAAA 59.016 29.630 4.18 0.00 0.00 2.69
4621 4846 3.371102 TGTAGGAAGAGTCGCATATGC 57.629 47.619 18.08 18.08 37.78 3.14
4735 4960 5.357032 AGGTGTATGCAGCCAAGTAAAATAC 59.643 40.000 9.50 0.00 43.61 1.89
4878 5103 7.229506 AGCTTATGCCACCTTATAGATGTTTTC 59.770 37.037 0.00 0.00 40.80 2.29
5039 5264 2.603021 AGTCTGAGGGATATCGCATGT 58.397 47.619 20.64 1.23 0.00 3.21
5177 5402 3.686726 GGAGTTGCTACAGTTGATTGAGG 59.313 47.826 0.13 0.00 0.00 3.86
5310 5535 4.685924 ACTTGTTCTTCTGCCACATTTTG 58.314 39.130 0.00 0.00 0.00 2.44
5365 5590 9.777297 TTACAAAAGTTCTAAAGTTATACCGGT 57.223 29.630 13.98 13.98 0.00 5.28
5725 5952 5.104485 AGGACATTTCCCCTGTATAACTCAC 60.104 44.000 0.00 0.00 44.10 3.51
5790 6019 9.598517 TGAAAAACTTTGCTATTCTCAACATTT 57.401 25.926 0.00 0.00 0.00 2.32
5815 6044 9.952030 TTTGTCATTTGTACTTCATAGATACCA 57.048 29.630 0.00 0.00 0.00 3.25
5816 6045 8.942338 TGTCATTTGTACTTCATAGATACCAC 57.058 34.615 0.00 0.00 0.00 4.16
5817 6046 8.536175 TGTCATTTGTACTTCATAGATACCACA 58.464 33.333 0.00 0.00 0.00 4.17
5818 6047 9.035607 GTCATTTGTACTTCATAGATACCACAG 57.964 37.037 0.00 0.00 0.00 3.66
5939 6169 6.182627 TGTAGATGAATCTGGCAAAACTCAT 58.817 36.000 2.99 0.00 37.76 2.90
6194 6424 4.993028 ACACTGGGCTAAAATTGAGGTAA 58.007 39.130 0.00 0.00 0.00 2.85
6357 6587 1.419762 TGGCCTGCTAAACTGTCTTGA 59.580 47.619 3.32 0.00 0.00 3.02
6362 6592 3.565482 CCTGCTAAACTGTCTTGAAAGCA 59.435 43.478 0.00 0.00 37.03 3.91
6407 6639 7.065204 GCTTCCTAACGAATTCTCTGATTCTTT 59.935 37.037 3.52 0.00 34.58 2.52
6578 6810 1.068748 GCAGACTGTCCAACATGCAAG 60.069 52.381 12.41 0.00 33.25 4.01
6589 6821 3.305335 CCAACATGCAAGGTAAAGGTGTC 60.305 47.826 0.00 0.00 0.00 3.67
6607 6839 1.607628 GTCCTGATTGATGGCATGCTC 59.392 52.381 18.92 8.93 0.00 4.26
6638 6870 8.715998 CACAGAGCTTTATCATAATGTGTATCC 58.284 37.037 0.00 0.00 33.78 2.59
6675 6909 5.780282 TCTGGAGAAATGTACTCTTCCAAGA 59.220 40.000 0.00 0.00 35.10 3.02
6931 7165 8.284945 TCATCCTCTGTTGAAATAAATTCTGG 57.715 34.615 0.00 0.00 38.92 3.86
6935 7169 6.437162 CCTCTGTTGAAATAAATTCTGGGGAA 59.563 38.462 0.00 0.00 38.92 3.97
6953 7187 5.837979 TGGGGAAGAAGAACAAATTGATTCA 59.162 36.000 0.00 0.00 0.00 2.57
7038 7272 1.756375 GCGCAATCGTACTGAGCCAG 61.756 60.000 0.30 1.16 38.14 4.85
7079 7313 1.400494 GCTGCGGTGGATTTTCGTAAT 59.600 47.619 0.00 0.00 0.00 1.89
7117 7371 5.049129 AGTGTTTGCTTGATCTACTTTGCTC 60.049 40.000 0.00 0.00 0.00 4.26
7185 7608 5.237815 TCTACAAGTACAAACTGAGCCATG 58.762 41.667 0.00 0.00 35.62 3.66
7196 7619 3.754965 ACTGAGCCATGAAGTTGCTTTA 58.245 40.909 0.00 0.00 34.99 1.85
7201 7624 5.165961 AGCCATGAAGTTGCTTTACTAGA 57.834 39.130 0.00 0.00 29.17 2.43
7210 7633 9.730420 TGAAGTTGCTTTACTAGAAAAACAATC 57.270 29.630 0.00 2.25 0.00 2.67
7224 7647 3.963428 AACAATCTTGGCGACTACTCT 57.037 42.857 0.00 0.00 0.00 3.24
7233 7656 4.701651 TGGCGACTACTCTAGAATCCTA 57.298 45.455 0.00 0.00 0.00 2.94
7242 7665 8.974060 ACTACTCTAGAATCCTAGACTCTTTG 57.026 38.462 0.00 0.00 44.69 2.77
7252 7675 4.816385 TCCTAGACTCTTTGTGTGCAAAAG 59.184 41.667 3.40 3.40 43.17 2.27
7259 7682 6.322491 ACTCTTTGTGTGCAAAAGTTCTTAC 58.678 36.000 8.76 0.00 43.17 2.34
7281 7717 9.480861 CTTACCCAGATGGAGATATACTCAATA 57.519 37.037 0.00 0.00 46.54 1.90
7325 7761 8.637986 TCTTCTTTTACATGGCAAAGTATTGTT 58.362 29.630 15.00 0.00 38.85 2.83
7327 7763 7.721402 TCTTTTACATGGCAAAGTATTGTTGT 58.279 30.769 15.00 0.00 38.85 3.32
7339 7775 5.385509 AGTATTGTTGTGGGCATACAAAC 57.614 39.130 7.93 3.98 41.75 2.93
7348 7784 3.733727 GTGGGCATACAAACGTTCAAAAG 59.266 43.478 0.00 0.00 0.00 2.27
7365 7801 0.031817 AAGGGGATGCATTTGGAGGG 60.032 55.000 0.00 0.00 0.00 4.30
7372 7808 1.686800 GCATTTGGAGGGTGGGCAT 60.687 57.895 0.00 0.00 0.00 4.40
7392 7828 4.337555 GCATTGGCTCACAGATTAACATCT 59.662 41.667 0.00 0.00 37.35 2.90
7456 7908 2.825532 CAACTATGTTGGGGAAAGTGGG 59.174 50.000 2.79 0.00 0.00 4.61
7480 7932 0.804364 TTGATTGATCCGCACACTGC 59.196 50.000 0.00 0.00 40.69 4.40
7519 7972 4.157289 TCCTATACGTTCTGTGTTCTCACC 59.843 45.833 0.00 0.00 43.26 4.02
7534 7987 0.389757 TCACCCGTCGATGTTCACAA 59.610 50.000 3.52 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.571212 TGAATGAGCGGTTGTCTGTTT 58.429 42.857 0.00 0.00 0.00 2.83
489 491 2.738643 GCTACAGCTCCAAGAATACGCA 60.739 50.000 0.00 0.00 38.21 5.24
508 510 7.624360 TTAATTTCATGTAAATCGACCAGCT 57.376 32.000 0.00 0.00 36.76 4.24
682 684 2.158081 ACACTCTTCCTCCCTCTTCCTT 60.158 50.000 0.00 0.00 0.00 3.36
764 766 6.513180 TGCAACGGGTCACATTAATTTTAAA 58.487 32.000 0.00 0.00 0.00 1.52
816 818 3.738830 TGTGCGTTAGAGGTAAACTGT 57.261 42.857 0.00 0.00 0.00 3.55
817 819 5.007332 AGTTTTGTGCGTTAGAGGTAAACTG 59.993 40.000 0.00 0.00 34.40 3.16
819 821 5.413969 AGTTTTGTGCGTTAGAGGTAAAC 57.586 39.130 0.00 0.00 0.00 2.01
820 822 5.585445 TGAAGTTTTGTGCGTTAGAGGTAAA 59.415 36.000 0.00 0.00 0.00 2.01
821 823 5.006941 GTGAAGTTTTGTGCGTTAGAGGTAA 59.993 40.000 0.00 0.00 0.00 2.85
822 824 4.508861 GTGAAGTTTTGTGCGTTAGAGGTA 59.491 41.667 0.00 0.00 0.00 3.08
823 825 3.311596 GTGAAGTTTTGTGCGTTAGAGGT 59.688 43.478 0.00 0.00 0.00 3.85
824 826 3.603857 CGTGAAGTTTTGTGCGTTAGAGG 60.604 47.826 0.00 0.00 0.00 3.69
825 827 3.531982 CGTGAAGTTTTGTGCGTTAGAG 58.468 45.455 0.00 0.00 0.00 2.43
826 828 2.285950 GCGTGAAGTTTTGTGCGTTAGA 60.286 45.455 0.00 0.00 0.00 2.10
827 829 2.034076 GCGTGAAGTTTTGTGCGTTAG 58.966 47.619 0.00 0.00 0.00 2.34
828 830 1.397343 TGCGTGAAGTTTTGTGCGTTA 59.603 42.857 0.00 0.00 0.00 3.18
829 831 0.169230 TGCGTGAAGTTTTGTGCGTT 59.831 45.000 0.00 0.00 0.00 4.84
830 832 0.380378 ATGCGTGAAGTTTTGTGCGT 59.620 45.000 0.00 0.00 0.00 5.24
831 833 2.308347 TATGCGTGAAGTTTTGTGCG 57.692 45.000 0.00 0.00 0.00 5.34
832 834 3.608073 GGAATATGCGTGAAGTTTTGTGC 59.392 43.478 0.00 0.00 0.00 4.57
833 835 4.616802 GTGGAATATGCGTGAAGTTTTGTG 59.383 41.667 0.00 0.00 0.00 3.33
834 836 4.277174 TGTGGAATATGCGTGAAGTTTTGT 59.723 37.500 0.00 0.00 0.00 2.83
835 837 4.616802 GTGTGGAATATGCGTGAAGTTTTG 59.383 41.667 0.00 0.00 0.00 2.44
836 838 4.320935 GGTGTGGAATATGCGTGAAGTTTT 60.321 41.667 0.00 0.00 0.00 2.43
837 839 3.190535 GGTGTGGAATATGCGTGAAGTTT 59.809 43.478 0.00 0.00 0.00 2.66
838 840 2.747446 GGTGTGGAATATGCGTGAAGTT 59.253 45.455 0.00 0.00 0.00 2.66
839 841 2.356135 GGTGTGGAATATGCGTGAAGT 58.644 47.619 0.00 0.00 0.00 3.01
840 842 1.327460 CGGTGTGGAATATGCGTGAAG 59.673 52.381 0.00 0.00 0.00 3.02
841 843 1.338294 ACGGTGTGGAATATGCGTGAA 60.338 47.619 0.00 0.00 0.00 3.18
842 844 0.248012 ACGGTGTGGAATATGCGTGA 59.752 50.000 0.00 0.00 0.00 4.35
843 845 1.858458 CTACGGTGTGGAATATGCGTG 59.142 52.381 0.00 0.00 0.00 5.34
844 846 1.805120 GCTACGGTGTGGAATATGCGT 60.805 52.381 0.00 0.00 0.00 5.24
845 847 0.859232 GCTACGGTGTGGAATATGCG 59.141 55.000 0.00 0.00 0.00 4.73
846 848 1.597663 GTGCTACGGTGTGGAATATGC 59.402 52.381 0.00 0.00 0.00 3.14
847 849 2.210116 GGTGCTACGGTGTGGAATATG 58.790 52.381 0.00 0.00 0.00 1.78
848 850 1.140252 GGGTGCTACGGTGTGGAATAT 59.860 52.381 0.00 0.00 0.00 1.28
849 851 0.538118 GGGTGCTACGGTGTGGAATA 59.462 55.000 0.00 0.00 0.00 1.75
850 852 1.198759 AGGGTGCTACGGTGTGGAAT 61.199 55.000 0.00 0.00 0.00 3.01
851 853 0.542467 TAGGGTGCTACGGTGTGGAA 60.542 55.000 0.00 0.00 0.00 3.53
852 854 1.077086 TAGGGTGCTACGGTGTGGA 59.923 57.895 0.00 0.00 0.00 4.02
853 855 1.217244 GTAGGGTGCTACGGTGTGG 59.783 63.158 0.00 0.00 0.00 4.17
854 856 1.217244 GGTAGGGTGCTACGGTGTG 59.783 63.158 0.00 0.00 0.00 3.82
855 857 1.228956 TGGTAGGGTGCTACGGTGT 60.229 57.895 0.00 0.00 0.00 4.16
856 858 1.515954 CTGGTAGGGTGCTACGGTG 59.484 63.158 0.00 0.00 0.00 4.94
857 859 2.356780 GCTGGTAGGGTGCTACGGT 61.357 63.158 0.00 0.00 0.00 4.83
858 860 2.499685 GCTGGTAGGGTGCTACGG 59.500 66.667 0.00 0.00 0.00 4.02
859 861 1.940883 TTCGCTGGTAGGGTGCTACG 61.941 60.000 0.00 0.00 0.00 3.51
860 862 0.248289 TTTCGCTGGTAGGGTGCTAC 59.752 55.000 0.00 0.00 0.00 3.58
861 863 0.978151 TTTTCGCTGGTAGGGTGCTA 59.022 50.000 0.00 0.00 0.00 3.49
862 864 0.605589 GTTTTCGCTGGTAGGGTGCT 60.606 55.000 0.00 0.00 0.00 4.40
863 865 1.583495 GGTTTTCGCTGGTAGGGTGC 61.583 60.000 0.00 0.00 0.00 5.01
864 866 0.958876 GGGTTTTCGCTGGTAGGGTG 60.959 60.000 0.00 0.00 0.00 4.61
865 867 1.377612 GGGTTTTCGCTGGTAGGGT 59.622 57.895 0.00 0.00 0.00 4.34
866 868 1.378119 GGGGTTTTCGCTGGTAGGG 60.378 63.158 0.00 0.00 0.00 3.53
867 869 1.743995 CGGGGTTTTCGCTGGTAGG 60.744 63.158 0.00 0.00 35.79 3.18
868 870 0.604511 AACGGGGTTTTCGCTGGTAG 60.605 55.000 0.00 0.00 42.44 3.18
869 871 0.603439 GAACGGGGTTTTCGCTGGTA 60.603 55.000 0.00 0.00 39.20 3.25
870 872 1.895231 GAACGGGGTTTTCGCTGGT 60.895 57.895 0.00 0.00 41.86 4.00
902 904 2.702592 TCGCGATGGGGTTTTAATCT 57.297 45.000 3.71 0.00 0.00 2.40
1074 1078 0.754957 AGGAGGAGAGAGCACGGATG 60.755 60.000 0.00 0.00 0.00 3.51
1569 1573 0.530211 CCTGCTGCTCTCGAATGGAG 60.530 60.000 0.00 2.26 44.58 3.86
1686 1690 7.933033 ACCAAATTTGTGCTAAGTGATTTTGAT 59.067 29.630 16.73 0.00 0.00 2.57
1802 1806 3.384146 TGTGTTTGAATCCATGCAACAGT 59.616 39.130 0.00 0.00 0.00 3.55
1811 1815 8.564574 GTTCTACATTAAGTGTGTTTGAATCCA 58.435 33.333 0.00 0.00 42.24 3.41
1848 1855 9.071276 AGTTTTGTCAAACATTGATGTCTAGAT 57.929 29.630 0.00 0.00 44.32 1.98
1850 1857 9.520204 AAAGTTTTGTCAAACATTGATGTCTAG 57.480 29.630 0.00 0.00 44.32 2.43
1859 1866 7.143514 ACATGCAAAAGTTTTGTCAAACATT 57.856 28.000 25.20 9.15 44.32 2.71
1861 1868 7.840342 ATACATGCAAAAGTTTTGTCAAACA 57.160 28.000 25.20 16.21 44.32 2.83
1908 1915 6.353082 GCCCATATATTAGTAGGTGCAAGGAT 60.353 42.308 0.00 0.00 0.00 3.24
1961 1968 9.956640 TTATTAACCATTTTCTGCCAATTGATT 57.043 25.926 7.12 0.00 0.00 2.57
1968 1975 6.377146 GGAGTCTTATTAACCATTTTCTGCCA 59.623 38.462 0.00 0.00 0.00 4.92
1993 2000 2.100584 AGACTCGAGCAAAGATAGCCTG 59.899 50.000 13.61 0.00 0.00 4.85
2006 2013 8.414778 AGACCTAATTAAATGGTAAGACTCGAG 58.585 37.037 11.84 11.84 33.74 4.04
2169 2176 2.691011 TGGGACTAAAGGTTGTTGTTGC 59.309 45.455 0.00 0.00 0.00 4.17
2288 2300 6.069963 AGGAGTATCAACAAAGAACTAGCCAT 60.070 38.462 0.00 0.00 36.25 4.40
2303 2315 7.227711 CGTAAAGAGAGATCTGAGGAGTATCAA 59.772 40.741 0.00 0.00 36.25 2.57
2375 2387 5.235534 AGTACTCCCTCCATCCCAAATTAT 58.764 41.667 0.00 0.00 0.00 1.28
2471 2483 9.743057 GTAAACATAGCCATGTGCAATTAAATA 57.257 29.630 0.00 0.00 44.83 1.40
2530 2542 9.814899 TCAAAGCAGTTTTCAATCTTCAATTAA 57.185 25.926 0.00 0.00 0.00 1.40
2619 2647 9.220767 GAGTTGAGGATTATCCATAACCATAAC 57.779 37.037 19.69 10.63 39.61 1.89
2637 2665 2.927014 GCGTGTACAGAAGGAGTTGAGG 60.927 54.545 0.00 0.00 0.00 3.86
2659 2687 3.133003 AGCGATACAACTCCTTGCATAGT 59.867 43.478 0.00 0.00 0.00 2.12
2699 2727 9.293404 TGCCAAATGATTTTCCAATTTTCATTA 57.707 25.926 0.00 0.00 36.33 1.90
2746 2774 2.168936 GCCAATGGGAAGCATTTCATCA 59.831 45.455 0.00 0.00 34.90 3.07
2856 2884 1.153349 GGAACCCTCATCTGTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
2858 2886 1.135915 CTCTGGAACCCTCATCTGTCG 59.864 57.143 0.00 0.00 0.00 4.35
2899 2927 9.965902 ACATGAACTGAATCTCCTAGTAAAATT 57.034 29.630 0.00 0.00 0.00 1.82
2931 2960 5.855740 AGCCCTTCTGTTAGTAGTATGTC 57.144 43.478 0.00 0.00 0.00 3.06
2940 2969 1.067821 CCGCTCTAGCCCTTCTGTTAG 59.932 57.143 0.00 0.00 37.91 2.34
2941 2970 1.112113 CCGCTCTAGCCCTTCTGTTA 58.888 55.000 0.00 0.00 37.91 2.41
2942 2971 0.905337 ACCGCTCTAGCCCTTCTGTT 60.905 55.000 0.00 0.00 37.91 3.16
2996 3025 3.736720 ACCTTCGGTCTTTCTGTTAACC 58.263 45.455 2.48 0.00 0.00 2.85
3019 3048 4.216687 GGATGATAAGACTCGACCGAAGAT 59.783 45.833 0.00 0.00 0.00 2.40
3052 3081 9.894783 GAACTTCTGGGTAAGAAATCTAAAAAC 57.105 33.333 0.00 0.00 44.38 2.43
3084 3113 7.604545 GTCTATCTTCTTAGCAAACCTCAAGTT 59.395 37.037 0.00 0.00 41.81 2.66
3331 3360 6.117975 AGTAATTTGAAACGGAGGGAGTAA 57.882 37.500 0.00 0.00 0.00 2.24
3332 3361 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
3333 3362 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
3334 3363 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
3335 3364 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
3336 3365 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
3337 3366 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
3338 3367 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
3339 3368 3.426191 CACGACGAGTAATTTGAAACGGA 59.574 43.478 0.00 0.00 0.00 4.69
3340 3369 3.422603 CCACGACGAGTAATTTGAAACGG 60.423 47.826 0.00 0.00 0.00 4.44
3341 3370 3.182972 ACCACGACGAGTAATTTGAAACG 59.817 43.478 0.00 0.00 0.00 3.60
3342 3371 4.720530 ACCACGACGAGTAATTTGAAAC 57.279 40.909 0.00 0.00 0.00 2.78
3343 3372 5.738118 AAACCACGACGAGTAATTTGAAA 57.262 34.783 0.00 0.00 0.00 2.69
3344 3373 5.738118 AAAACCACGACGAGTAATTTGAA 57.262 34.783 0.00 0.00 0.00 2.69
3345 3374 5.984926 ACTAAAACCACGACGAGTAATTTGA 59.015 36.000 0.00 0.00 0.00 2.69
3346 3375 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
3347 3376 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
3348 3377 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
3349 3378 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
3350 3379 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3351 3380 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3352 3381 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3353 3382 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3354 3383 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3355 3384 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3356 3385 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3369 3398 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3370 3399 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3371 3400 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3372 3401 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3373 3402 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3374 3403 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3375 3404 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3376 3405 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3377 3406 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3378 3407 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
3379 3408 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
3380 3409 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
3381 3410 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
3382 3411 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
3383 3412 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
3384 3413 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
3385 3414 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
3386 3415 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
3387 3416 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
3388 3417 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
3389 3418 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
3390 3419 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3391 3420 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3392 3421 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3393 3422 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
3394 3423 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
3395 3424 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3396 3425 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3397 3426 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
3398 3427 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
3399 3428 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
3400 3429 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3401 3430 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
3402 3431 2.905415 TAACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
3403 3432 3.294214 TCATAACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
3404 3433 4.159135 TGTTCATAACTACTCCCTCCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
3405 3434 4.091549 TGTTCATAACTACTCCCTCCGTT 58.908 43.478 0.00 0.00 0.00 4.44
3406 3435 3.700038 CTGTTCATAACTACTCCCTCCGT 59.300 47.826 0.00 0.00 0.00 4.69
3407 3436 3.700038 ACTGTTCATAACTACTCCCTCCG 59.300 47.826 0.00 0.00 0.00 4.63
3408 3437 5.422650 AGAACTGTTCATAACTACTCCCTCC 59.577 44.000 21.50 0.00 0.00 4.30
3409 3438 6.532988 AGAACTGTTCATAACTACTCCCTC 57.467 41.667 21.50 0.00 0.00 4.30
3410 3439 6.936968 AAGAACTGTTCATAACTACTCCCT 57.063 37.500 21.50 0.00 0.00 4.20
3411 3440 7.711339 CCATAAGAACTGTTCATAACTACTCCC 59.289 40.741 21.50 0.00 0.00 4.30
3412 3441 7.224949 GCCATAAGAACTGTTCATAACTACTCC 59.775 40.741 21.50 0.00 0.00 3.85
3413 3442 7.764443 TGCCATAAGAACTGTTCATAACTACTC 59.236 37.037 21.50 4.13 0.00 2.59
3414 3443 7.620880 TGCCATAAGAACTGTTCATAACTACT 58.379 34.615 21.50 0.00 0.00 2.57
3415 3444 7.843490 TGCCATAAGAACTGTTCATAACTAC 57.157 36.000 21.50 6.82 0.00 2.73
3481 3510 4.578601 CAGTTAGCACGCATAAAAGCTAC 58.421 43.478 0.00 0.00 39.11 3.58
3510 3539 4.481368 AGTTGGGCGTACATATTCAGAA 57.519 40.909 0.00 0.00 0.00 3.02
3523 3552 2.396157 GGGCGAGTAAAGTTGGGCG 61.396 63.158 0.00 0.00 0.00 6.13
3606 3635 5.441500 TGTCCAAACTGAAATTAGTGGACA 58.558 37.500 17.11 17.11 44.70 4.02
3607 3636 6.206634 TCATGTCCAAACTGAAATTAGTGGAC 59.793 38.462 12.61 12.61 41.03 4.02
3791 4006 7.661040 CGGGCAAGATAAAATAAATCAGGATT 58.339 34.615 0.00 0.00 0.00 3.01
3802 4017 1.750778 CCACAGCGGGCAAGATAAAAT 59.249 47.619 0.00 0.00 0.00 1.82
4016 4231 1.556451 GCCAATTCCTGAAAAGGGCAT 59.444 47.619 12.24 0.00 35.93 4.40
4032 4247 7.495901 TGATATGTTTGTTTTCAGAAAGCCAA 58.504 30.769 7.23 6.62 0.00 4.52
4151 4366 2.843730 TGCTGTAGGGCTTCATCCTTTA 59.156 45.455 0.00 0.00 35.92 1.85
4503 4719 9.334693 CTAAAACATGTAAGAGCAAGCTAAAAG 57.665 33.333 0.00 0.00 0.00 2.27
4621 4846 8.041323 ACCTGACACTTCTTGTATAACTTATGG 58.959 37.037 0.00 0.00 39.17 2.74
4878 5103 0.034059 ACTGTCGGCTTCAGTTCTGG 59.966 55.000 5.79 0.00 42.50 3.86
5039 5264 4.716784 ACCTAGTATTTCATCACTCCAGCA 59.283 41.667 0.00 0.00 0.00 4.41
5177 5402 2.564947 CAGGTGCAGGTATATCCTCCTC 59.435 54.545 0.00 0.00 46.24 3.71
5226 5451 2.611800 TCATGGGGCTCCTGCTGT 60.612 61.111 3.07 0.00 39.59 4.40
5310 5535 8.055402 CACAGCAACATTAATTAACACAACAAC 58.945 33.333 0.00 0.00 0.00 3.32
5365 5590 1.425066 AGAACATGCCCTCCTGTGAAA 59.575 47.619 0.00 0.00 0.00 2.69
5417 5642 8.866956 CCTTTTTGATATCTTGCAAATCTGAAC 58.133 33.333 0.00 0.00 34.36 3.18
5579 5804 6.311935 CGACACTTATTTTGGATCGTAGGAAA 59.688 38.462 0.00 0.00 0.00 3.13
5581 5806 5.345702 CGACACTTATTTTGGATCGTAGGA 58.654 41.667 0.00 0.00 0.00 2.94
5790 6019 9.378551 GTGGTATCTATGAAGTACAAATGACAA 57.621 33.333 0.00 0.00 0.00 3.18
5815 6044 8.306313 TGACACCTATACATACTGATTTCTGT 57.694 34.615 0.00 0.00 0.00 3.41
5816 6045 8.417106 ACTGACACCTATACATACTGATTTCTG 58.583 37.037 0.00 0.00 0.00 3.02
5817 6046 8.540507 ACTGACACCTATACATACTGATTTCT 57.459 34.615 0.00 0.00 0.00 2.52
5845 6075 9.521841 TCCATGACTGTTGTTAATTTATTACCA 57.478 29.630 0.00 0.00 0.00 3.25
5859 6089 4.339247 ACCAAAGTTCTTCCATGACTGTTG 59.661 41.667 0.00 0.00 0.00 3.33
5939 6169 5.923733 AACCTTGTGTCATGGTTAACAAA 57.076 34.783 15.18 0.00 45.72 2.83
6194 6424 6.296026 TCTTGCAGGTGATAGTTAAAGTTGT 58.704 36.000 0.00 0.00 0.00 3.32
6229 6459 3.768468 AACAAACACCAAACGGTAGTG 57.232 42.857 2.17 2.17 33.92 2.74
6357 6587 7.229106 AGCAAACCATTTTGTCAATAATGCTTT 59.771 29.630 11.75 9.42 43.62 3.51
6362 6592 7.452562 AGGAAGCAAACCATTTTGTCAATAAT 58.547 30.769 0.00 0.00 43.62 1.28
6407 6639 1.071699 CCTTGTCCTTCGGAACCTGAA 59.928 52.381 0.00 0.00 31.38 3.02
6480 6712 0.874390 CCATGCGCGCCTTGTTATAT 59.126 50.000 30.77 9.84 0.00 0.86
6578 6810 3.947834 CCATCAATCAGGACACCTTTACC 59.052 47.826 0.00 0.00 0.00 2.85
6589 6821 1.687563 TGAGCATGCCATCAATCAGG 58.312 50.000 15.66 0.00 0.00 3.86
6607 6839 6.039047 ACATTATGATAAAGCTCTGTGCCTTG 59.961 38.462 0.00 0.00 44.23 3.61
6675 6909 5.407407 ACTATCAACGACAGAATCCAACT 57.593 39.130 0.00 0.00 0.00 3.16
6676 6910 5.163854 CCAACTATCAACGACAGAATCCAAC 60.164 44.000 0.00 0.00 0.00 3.77
6821 7055 1.269102 GCGCTTAACCTGAGATCGCTA 60.269 52.381 0.00 0.00 38.29 4.26
6822 7056 0.528684 GCGCTTAACCTGAGATCGCT 60.529 55.000 0.00 0.00 38.29 4.93
6823 7057 0.528684 AGCGCTTAACCTGAGATCGC 60.529 55.000 2.64 0.00 41.16 4.58
6824 7058 1.590238 CAAGCGCTTAACCTGAGATCG 59.410 52.381 24.55 1.38 0.00 3.69
6931 7165 6.986250 ACTGAATCAATTTGTTCTTCTTCCC 58.014 36.000 0.00 0.00 0.00 3.97
6935 7169 9.472361 CATTGAACTGAATCAATTTGTTCTTCT 57.528 29.630 12.28 0.00 45.39 2.85
6953 7187 1.072806 TCTCCAGCTGCACATTGAACT 59.927 47.619 8.66 0.00 0.00 3.01
7038 7272 0.109319 CCAAACGCAGCCAACCATAC 60.109 55.000 0.00 0.00 0.00 2.39
7079 7313 7.500892 TCAAGCAAACACTAAAATAGGACAAGA 59.499 33.333 0.00 0.00 0.00 3.02
7157 7411 6.091441 GGCTCAGTTTGTACTTGTAGAATCTG 59.909 42.308 16.21 16.21 30.26 2.90
7164 7418 5.222079 TCATGGCTCAGTTTGTACTTGTA 57.778 39.130 0.00 0.00 30.26 2.41
7185 7608 9.952188 AGATTGTTTTTCTAGTAAAGCAACTTC 57.048 29.630 20.66 16.37 39.76 3.01
7196 7619 5.063880 AGTCGCCAAGATTGTTTTTCTAGT 58.936 37.500 0.00 0.00 0.00 2.57
7201 7624 5.063880 AGAGTAGTCGCCAAGATTGTTTTT 58.936 37.500 0.00 0.00 0.00 1.94
7210 7633 3.886505 AGGATTCTAGAGTAGTCGCCAAG 59.113 47.826 0.00 0.00 0.00 3.61
7224 7647 5.480422 TGCACACAAAGAGTCTAGGATTCTA 59.520 40.000 0.00 0.00 28.68 2.10
7233 7656 4.702131 AGAACTTTTGCACACAAAGAGTCT 59.298 37.500 14.71 12.74 46.08 3.24
7242 7665 3.630312 TCTGGGTAAGAACTTTTGCACAC 59.370 43.478 0.00 0.00 29.54 3.82
7252 7675 7.451877 TGAGTATATCTCCATCTGGGTAAGAAC 59.548 40.741 0.00 0.00 42.12 3.01
7259 7682 7.147759 CCTGTATTGAGTATATCTCCATCTGGG 60.148 44.444 0.00 0.00 42.12 4.45
7298 7734 8.299570 ACAATACTTTGCCATGTAAAAGAAGAG 58.700 33.333 19.00 10.99 36.96 2.85
7325 7761 1.968704 TGAACGTTTGTATGCCCACA 58.031 45.000 0.46 0.00 0.00 4.17
7327 7763 3.243569 CCTTTTGAACGTTTGTATGCCCA 60.244 43.478 0.46 0.00 0.00 5.36
7339 7775 2.995258 CAAATGCATCCCCTTTTGAACG 59.005 45.455 0.00 0.00 33.91 3.95
7348 7784 1.044790 CACCCTCCAAATGCATCCCC 61.045 60.000 0.00 0.00 0.00 4.81
7365 7801 0.682209 ATCTGTGAGCCAATGCCCAC 60.682 55.000 0.00 0.00 45.61 4.61
7382 7818 8.723942 ATTCACTAGTTGGACAGATGTTAATC 57.276 34.615 0.00 0.00 0.00 1.75
7392 7828 5.422331 CCTTCCTAGATTCACTAGTTGGACA 59.578 44.000 0.00 0.00 45.01 4.02
7393 7829 5.422650 ACCTTCCTAGATTCACTAGTTGGAC 59.577 44.000 0.00 0.00 45.01 4.02
7456 7908 3.624861 AGTGTGCGGATCAATCAATTCTC 59.375 43.478 0.00 0.00 0.00 2.87
7480 7932 0.554792 AGGAGCTTCATCCCATTGGG 59.445 55.000 16.26 16.26 46.11 4.12
7489 7941 4.402793 ACACAGAACGTATAGGAGCTTCAT 59.597 41.667 0.00 0.00 0.00 2.57
7519 7972 6.767080 TGTAATATTTTGTGAACATCGACGG 58.233 36.000 0.00 0.00 0.00 4.79
7554 8007 1.667595 TCATCCATCACTTCCACCCA 58.332 50.000 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.