Multiple sequence alignment - TraesCS5A01G131500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G131500 chr5A 100.000 5026 0 0 1 5026 296306242 296301217 0.000000e+00 9282.0
1 TraesCS5A01G131500 chr5A 89.865 296 25 3 1 292 14133425 14133719 4.750000e-100 375.0
2 TraesCS5A01G131500 chr5A 89.831 295 23 6 1 290 323730901 323730609 6.150000e-99 372.0
3 TraesCS5A01G131500 chr5B 95.262 3145 94 20 987 4087 249071581 249074714 0.000000e+00 4931.0
4 TraesCS5A01G131500 chr5B 90.081 494 27 6 4167 4654 249074717 249075194 5.530000e-174 621.0
5 TraesCS5A01G131500 chr5B 87.111 450 40 7 541 983 249071109 249071547 1.260000e-135 494.0
6 TraesCS5A01G131500 chr5B 86.384 448 43 7 541 981 248922153 248922589 1.640000e-129 473.0
7 TraesCS5A01G131500 chr5B 96.552 87 3 0 420 506 480252611 480252697 1.460000e-30 145.0
8 TraesCS5A01G131500 chr5B 91.549 71 6 0 4352 4422 321530286 321530356 1.150000e-16 99.0
9 TraesCS5A01G131500 chr5B 94.737 57 3 0 4429 4485 321470371 321470427 6.930000e-14 89.8
10 TraesCS5A01G131500 chr5D 94.286 2100 76 16 504 2560 223652076 223649978 0.000000e+00 3173.0
11 TraesCS5A01G131500 chr5D 96.212 1531 39 7 2562 4089 223649893 223648379 0.000000e+00 2488.0
12 TraesCS5A01G131500 chr5D 91.049 391 21 3 4313 4697 223647917 223647535 2.680000e-142 516.0
13 TraesCS5A01G131500 chr5D 96.175 183 7 0 4824 5006 223647299 223647117 2.940000e-77 300.0
14 TraesCS5A01G131500 chr5D 93.443 183 11 1 4647 4828 223647524 223647342 2.310000e-68 270.0
15 TraesCS5A01G131500 chr5D 92.667 150 8 2 4167 4314 223648382 223648234 3.940000e-51 213.0
16 TraesCS5A01G131500 chr5D 91.954 87 7 0 4541 4627 505561148 505561062 6.830000e-24 122.0
17 TraesCS5A01G131500 chr5D 89.286 84 7 1 4084 4165 123089670 123089587 2.480000e-18 104.0
18 TraesCS5A01G131500 chr5D 80.822 146 14 3 4290 4422 283341684 283341828 8.900000e-18 102.0
19 TraesCS5A01G131500 chr5D 87.952 83 8 1 4085 4165 176109406 176109324 4.140000e-16 97.1
20 TraesCS5A01G131500 chr3D 80.293 1025 129 32 1577 2581 43974594 43973623 0.000000e+00 706.0
21 TraesCS5A01G131500 chr3D 85.974 606 62 15 2887 3484 43973625 43973035 1.190000e-175 627.0
22 TraesCS5A01G131500 chr3D 86.535 505 59 9 3506 4006 43972969 43972470 9.510000e-152 547.0
23 TraesCS5A01G131500 chr3D 86.486 185 23 2 1283 1466 43974919 43974736 8.530000e-48 202.0
24 TraesCS5A01G131500 chr3D 95.556 90 2 2 420 508 318669377 318669289 5.250000e-30 143.0
25 TraesCS5A01G131500 chr3D 86.905 84 9 2 4084 4165 145198804 145198721 5.360000e-15 93.5
26 TraesCS5A01G131500 chr3D 85.057 87 11 2 4085 4169 13181986 13181900 2.490000e-13 87.9
27 TraesCS5A01G131500 chr3A 80.273 1024 131 37 1577 2581 56143843 56142872 0.000000e+00 706.0
28 TraesCS5A01G131500 chr3A 86.004 543 55 15 2887 3422 56142874 56142346 3.400000e-156 562.0
29 TraesCS5A01G131500 chr3A 84.015 538 70 15 3506 4033 56142249 56141718 2.090000e-138 503.0
30 TraesCS5A01G131500 chr3A 89.180 305 25 6 1 298 740061891 740062194 1.710000e-99 374.0
31 TraesCS5A01G131500 chr3A 89.109 303 22 7 1 292 749446608 749446910 2.860000e-97 366.0
32 TraesCS5A01G131500 chr3A 87.568 185 21 2 1283 1466 56144170 56143987 3.940000e-51 213.0
33 TraesCS5A01G131500 chr3A 95.506 89 4 0 418 506 729669327 729669415 5.250000e-30 143.0
34 TraesCS5A01G131500 chr3B 86.556 543 48 17 2887 3422 68882671 68882147 4.360000e-160 575.0
35 TraesCS5A01G131500 chr3B 84.416 539 69 14 3506 4033 68882050 68881516 2.680000e-142 516.0
36 TraesCS5A01G131500 chr3B 84.262 413 33 15 1578 1984 68883763 68883377 1.710000e-99 374.0
37 TraesCS5A01G131500 chr3B 81.250 480 63 20 999 1466 68884365 68883901 3.700000e-96 363.0
38 TraesCS5A01G131500 chr3B 90.476 84 6 1 4084 4165 741580451 741580534 5.320000e-20 110.0
39 TraesCS5A01G131500 chr6D 91.781 292 21 3 1 290 422220475 422220185 2.180000e-108 403.0
40 TraesCS5A01G131500 chr6D 88.095 84 8 1 4084 4165 142846312 142846395 1.150000e-16 99.0
41 TraesCS5A01G131500 chr6D 86.047 86 10 2 4085 4168 465043922 465043837 1.930000e-14 91.6
42 TraesCS5A01G131500 chr6D 85.542 83 10 2 4085 4165 448576987 448577069 8.970000e-13 86.1
43 TraesCS5A01G131500 chr6D 81.915 94 14 3 4085 4175 410110816 410110909 5.400000e-10 76.8
44 TraesCS5A01G131500 chr6D 81.928 83 13 2 4085 4165 386699723 386699641 9.030000e-08 69.4
45 TraesCS5A01G131500 chr6D 80.723 83 14 2 4085 4165 45481855 45481773 4.200000e-06 63.9
46 TraesCS5A01G131500 chr6A 90.444 293 24 3 1 290 228540969 228541260 2.840000e-102 383.0
47 TraesCS5A01G131500 chr6A 90.244 82 6 2 4086 4165 363516453 363516534 6.880000e-19 106.0
48 TraesCS5A01G131500 chr7A 90.102 293 24 5 1 290 491992218 491992508 4.750000e-100 375.0
49 TraesCS5A01G131500 chr7A 94.565 92 5 0 417 508 672017133 672017042 5.250000e-30 143.0
50 TraesCS5A01G131500 chr1A 89.726 292 19 6 1 290 494812707 494812989 3.700000e-96 363.0
51 TraesCS5A01G131500 chr1A 88.779 303 19 7 1 290 571790880 571791180 1.720000e-94 357.0
52 TraesCS5A01G131500 chr1A 89.655 87 6 2 4081 4165 58290339 58290424 1.910000e-19 108.0
53 TraesCS5A01G131500 chr1A 89.157 83 7 1 4085 4165 394590544 394590626 8.900000e-18 102.0
54 TraesCS5A01G131500 chr4A 94.681 94 4 1 416 509 473777265 473777173 1.460000e-30 145.0
55 TraesCS5A01G131500 chr4A 86.813 91 9 2 4084 4172 743181471 743181560 1.150000e-16 99.0
56 TraesCS5A01G131500 chr4A 86.813 91 9 2 4084 4172 743224616 743224705 1.150000e-16 99.0
57 TraesCS5A01G131500 chr4A 84.314 102 13 3 4070 4169 585459952 585459852 4.140000e-16 97.1
58 TraesCS5A01G131500 chr2B 94.624 93 5 0 413 505 357917550 357917642 1.460000e-30 145.0
59 TraesCS5A01G131500 chr2B 93.750 96 5 1 417 512 129662035 129661941 5.250000e-30 143.0
60 TraesCS5A01G131500 chr7D 91.346 104 9 0 410 513 509159240 509159343 5.250000e-30 143.0
61 TraesCS5A01G131500 chr7D 88.095 84 8 1 4084 4165 428885180 428885097 1.150000e-16 99.0
62 TraesCS5A01G131500 chr7D 91.667 72 4 1 4096 4165 428894841 428894770 1.150000e-16 99.0
63 TraesCS5A01G131500 chr7B 92.708 96 7 0 417 512 361147082 361147177 6.780000e-29 139.0
64 TraesCS5A01G131500 chr6B 88.764 89 8 2 4085 4171 555807961 555808049 1.910000e-19 108.0
65 TraesCS5A01G131500 chr4D 87.368 95 10 1 4073 4165 492602140 492602234 1.910000e-19 108.0
66 TraesCS5A01G131500 chr1D 90.361 83 6 2 4085 4165 448689979 448689897 1.910000e-19 108.0
67 TraesCS5A01G131500 chr1D 85.057 87 10 2 4081 4165 59879877 59879962 8.970000e-13 86.1
68 TraesCS5A01G131500 chr1D 84.146 82 12 1 4085 4165 477285619 477285700 1.500000e-10 78.7
69 TraesCS5A01G131500 chr1D 81.818 88 14 1 4085 4170 2096172 2096259 6.980000e-09 73.1
70 TraesCS5A01G131500 chr2D 87.778 90 8 3 4085 4172 649753814 649753726 8.900000e-18 102.0
71 TraesCS5A01G131500 chr2D 88.095 84 8 1 4084 4165 170277738 170277821 1.150000e-16 99.0
72 TraesCS5A01G131500 chr4B 87.342 79 8 2 4089 4165 348086139 348086061 6.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G131500 chr5A 296301217 296306242 5025 True 9282.000000 9282 100.000 1 5026 1 chr5A.!!$R1 5025
1 TraesCS5A01G131500 chr5B 249071109 249075194 4085 False 2015.333333 4931 90.818 541 4654 3 chr5B.!!$F5 4113
2 TraesCS5A01G131500 chr5D 223647117 223652076 4959 True 1160.000000 3173 93.972 504 5006 6 chr5D.!!$R4 4502
3 TraesCS5A01G131500 chr3D 43972470 43974919 2449 True 520.500000 706 84.822 1283 4006 4 chr3D.!!$R4 2723
4 TraesCS5A01G131500 chr3A 56141718 56144170 2452 True 496.000000 706 84.465 1283 4033 4 chr3A.!!$R1 2750
5 TraesCS5A01G131500 chr3B 68881516 68884365 2849 True 457.000000 575 84.121 999 4033 4 chr3B.!!$R1 3034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.027194 CGGAATCAGACAATGCGCTG 59.973 55.0 9.73 0.99 0.00 5.18 F
421 422 0.109723 TCCAGGCCCAACACAACTAC 59.890 55.0 0.00 0.00 0.00 2.73 F
422 423 0.110486 CCAGGCCCAACACAACTACT 59.890 55.0 0.00 0.00 0.00 2.57 F
424 425 0.400594 AGGCCCAACACAACTACTCC 59.599 55.0 0.00 0.00 0.00 3.85 F
426 427 0.400594 GCCCAACACAACTACTCCCT 59.599 55.0 0.00 0.00 0.00 4.20 F
1749 1893 0.468226 TCTCCCATGGCCGTAACATC 59.532 55.0 6.09 0.00 0.00 3.06 F
2521 2814 0.591170 GTGGCGCTGCTACTTTTTCA 59.409 50.0 7.64 0.00 37.08 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1178 1225 0.033306 GAGGGGGAGGAGAGTTACGT 60.033 60.000 0.00 0.0 0.00 3.57 R
1276 1336 1.739049 CTCTCCTCCTCATGGTCGC 59.261 63.158 0.00 0.0 34.23 5.19 R
1895 2045 1.986378 GACGAGTCCAACAGATCAACG 59.014 52.381 0.00 0.0 0.00 4.10 R
1913 2063 2.062519 GAGCCAAGAGTCTGTTTCGAC 58.937 52.381 0.00 0.0 0.00 4.20 R
2161 2437 2.162408 GCAAAGCATCTGTGGTAAGTCC 59.838 50.000 0.00 0.0 34.36 3.85 R
2660 3038 3.531538 TGCTAAGTTAAGGATTCGCCAG 58.468 45.455 0.00 0.0 40.02 4.85 R
4231 4682 0.323360 ATGCGCTTTCTAGGCCCAAA 60.323 50.000 9.73 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.685836 CGGAAGAAAAACCGTGACTTT 57.314 42.857 0.00 0.00 43.53 2.66
25 26 3.614588 CGGAAGAAAAACCGTGACTTTC 58.385 45.455 0.00 0.00 43.53 2.62
26 27 3.064271 CGGAAGAAAAACCGTGACTTTCA 59.936 43.478 0.00 0.00 43.53 2.69
27 28 4.348656 GGAAGAAAAACCGTGACTTTCAC 58.651 43.478 0.00 0.00 43.65 3.18
99 100 8.782533 TTTTTGATCGAAAAGCTAAGAAAGAC 57.217 30.769 15.57 0.00 34.96 3.01
100 101 6.481954 TTGATCGAAAAGCTAAGAAAGACC 57.518 37.500 0.00 0.00 0.00 3.85
101 102 4.625742 TGATCGAAAAGCTAAGAAAGACCG 59.374 41.667 0.00 0.00 0.00 4.79
102 103 4.247267 TCGAAAAGCTAAGAAAGACCGA 57.753 40.909 0.00 0.00 0.00 4.69
103 104 4.235360 TCGAAAAGCTAAGAAAGACCGAG 58.765 43.478 0.00 0.00 0.00 4.63
104 105 3.368236 CGAAAAGCTAAGAAAGACCGAGG 59.632 47.826 0.00 0.00 0.00 4.63
105 106 3.336138 AAAGCTAAGAAAGACCGAGGG 57.664 47.619 0.00 0.00 0.00 4.30
106 107 2.233305 AGCTAAGAAAGACCGAGGGA 57.767 50.000 0.00 0.00 0.00 4.20
107 108 2.537143 AGCTAAGAAAGACCGAGGGAA 58.463 47.619 0.00 0.00 0.00 3.97
108 109 2.904434 AGCTAAGAAAGACCGAGGGAAA 59.096 45.455 0.00 0.00 0.00 3.13
109 110 3.326880 AGCTAAGAAAGACCGAGGGAAAA 59.673 43.478 0.00 0.00 0.00 2.29
110 111 3.436015 GCTAAGAAAGACCGAGGGAAAAC 59.564 47.826 0.00 0.00 0.00 2.43
111 112 2.563261 AGAAAGACCGAGGGAAAACC 57.437 50.000 0.00 0.00 40.67 3.27
112 113 1.772453 AGAAAGACCGAGGGAAAACCA 59.228 47.619 0.00 0.00 43.89 3.67
113 114 2.173996 AGAAAGACCGAGGGAAAACCAA 59.826 45.455 0.00 0.00 43.89 3.67
114 115 2.740506 AAGACCGAGGGAAAACCAAA 57.259 45.000 0.00 0.00 43.89 3.28
115 116 2.740506 AGACCGAGGGAAAACCAAAA 57.259 45.000 0.00 0.00 43.89 2.44
116 117 2.304092 AGACCGAGGGAAAACCAAAAC 58.696 47.619 0.00 0.00 43.89 2.43
117 118 1.002142 GACCGAGGGAAAACCAAAACG 60.002 52.381 0.00 0.00 43.89 3.60
118 119 1.026584 CCGAGGGAAAACCAAAACGT 58.973 50.000 0.00 0.00 43.89 3.99
119 120 1.002142 CCGAGGGAAAACCAAAACGTC 60.002 52.381 0.00 0.00 43.89 4.34
120 121 1.333435 CGAGGGAAAACCAAAACGTCG 60.333 52.381 0.00 0.00 43.89 5.12
121 122 1.941975 GAGGGAAAACCAAAACGTCGA 59.058 47.619 0.00 0.00 43.89 4.20
122 123 2.355444 GAGGGAAAACCAAAACGTCGAA 59.645 45.455 0.00 0.00 43.89 3.71
123 124 2.754002 AGGGAAAACCAAAACGTCGAAA 59.246 40.909 0.00 0.00 43.89 3.46
124 125 3.193056 AGGGAAAACCAAAACGTCGAAAA 59.807 39.130 0.00 0.00 43.89 2.29
125 126 3.925299 GGGAAAACCAAAACGTCGAAAAA 59.075 39.130 0.00 0.00 39.85 1.94
126 127 4.201608 GGGAAAACCAAAACGTCGAAAAAC 60.202 41.667 0.00 0.00 39.85 2.43
127 128 4.201608 GGAAAACCAAAACGTCGAAAAACC 60.202 41.667 0.00 0.00 0.00 3.27
128 129 2.565210 ACCAAAACGTCGAAAAACCC 57.435 45.000 0.00 0.00 0.00 4.11
129 130 1.134753 ACCAAAACGTCGAAAAACCCC 59.865 47.619 0.00 0.00 0.00 4.95
130 131 1.468895 CAAAACGTCGAAAAACCCCG 58.531 50.000 0.00 0.00 0.00 5.73
131 132 0.381445 AAAACGTCGAAAAACCCCGG 59.619 50.000 0.00 0.00 0.00 5.73
132 133 0.463474 AAACGTCGAAAAACCCCGGA 60.463 50.000 0.73 0.00 0.00 5.14
133 134 0.463474 AACGTCGAAAAACCCCGGAA 60.463 50.000 0.73 0.00 0.00 4.30
134 135 0.463474 ACGTCGAAAAACCCCGGAAA 60.463 50.000 0.73 0.00 0.00 3.13
135 136 0.662085 CGTCGAAAAACCCCGGAAAA 59.338 50.000 0.73 0.00 0.00 2.29
136 137 1.065251 CGTCGAAAAACCCCGGAAAAA 59.935 47.619 0.73 0.00 0.00 1.94
157 158 6.477669 AAAAACCGTTTAAAAAGCCGAAAA 57.522 29.167 0.00 0.00 0.00 2.29
158 159 5.453281 AAACCGTTTAAAAAGCCGAAAAC 57.547 34.783 0.00 0.00 0.00 2.43
159 160 4.107363 ACCGTTTAAAAAGCCGAAAACA 57.893 36.364 0.00 0.00 32.61 2.83
160 161 4.684877 ACCGTTTAAAAAGCCGAAAACAT 58.315 34.783 0.00 0.00 32.61 2.71
161 162 4.504826 ACCGTTTAAAAAGCCGAAAACATG 59.495 37.500 0.00 0.00 32.61 3.21
162 163 4.504826 CCGTTTAAAAAGCCGAAAACATGT 59.495 37.500 0.00 0.00 32.61 3.21
163 164 5.419530 CGTTTAAAAAGCCGAAAACATGTG 58.580 37.500 0.00 0.00 32.61 3.21
164 165 5.004916 CGTTTAAAAAGCCGAAAACATGTGT 59.995 36.000 0.00 0.00 32.61 3.72
165 166 5.957910 TTAAAAAGCCGAAAACATGTGTG 57.042 34.783 0.00 0.00 0.00 3.82
166 167 3.791973 AAAAGCCGAAAACATGTGTGA 57.208 38.095 0.00 0.00 0.00 3.58
167 168 3.791973 AAAGCCGAAAACATGTGTGAA 57.208 38.095 0.00 0.00 0.00 3.18
168 169 3.791973 AAGCCGAAAACATGTGTGAAA 57.208 38.095 0.00 0.00 0.00 2.69
169 170 3.791973 AGCCGAAAACATGTGTGAAAA 57.208 38.095 0.00 0.00 0.00 2.29
170 171 4.116747 AGCCGAAAACATGTGTGAAAAA 57.883 36.364 0.00 0.00 0.00 1.94
171 172 4.692228 AGCCGAAAACATGTGTGAAAAAT 58.308 34.783 0.00 0.00 0.00 1.82
172 173 5.837437 AGCCGAAAACATGTGTGAAAAATA 58.163 33.333 0.00 0.00 0.00 1.40
173 174 6.276847 AGCCGAAAACATGTGTGAAAAATAA 58.723 32.000 0.00 0.00 0.00 1.40
174 175 6.758886 AGCCGAAAACATGTGTGAAAAATAAA 59.241 30.769 0.00 0.00 0.00 1.40
175 176 7.278868 AGCCGAAAACATGTGTGAAAAATAAAA 59.721 29.630 0.00 0.00 0.00 1.52
176 177 8.067189 GCCGAAAACATGTGTGAAAAATAAAAT 58.933 29.630 0.00 0.00 0.00 1.82
193 194 9.503427 AAAATAAAATAAAATCCGAAGAGAGCG 57.497 29.630 0.00 0.00 0.00 5.03
194 195 7.787725 ATAAAATAAAATCCGAAGAGAGCGT 57.212 32.000 0.00 0.00 0.00 5.07
195 196 5.720261 AAATAAAATCCGAAGAGAGCGTC 57.280 39.130 0.00 0.00 0.00 5.19
196 197 2.011540 AAAATCCGAAGAGAGCGTCC 57.988 50.000 0.00 0.00 0.00 4.79
197 198 0.175989 AAATCCGAAGAGAGCGTCCC 59.824 55.000 0.00 0.00 0.00 4.46
198 199 2.005960 AATCCGAAGAGAGCGTCCCG 62.006 60.000 0.00 0.00 0.00 5.14
199 200 2.888464 ATCCGAAGAGAGCGTCCCGA 62.888 60.000 0.00 0.00 0.00 5.14
200 201 2.405594 CGAAGAGAGCGTCCCGAG 59.594 66.667 0.00 0.00 0.00 4.63
201 202 2.103340 GAAGAGAGCGTCCCGAGC 59.897 66.667 0.00 0.00 0.00 5.03
202 203 3.743091 GAAGAGAGCGTCCCGAGCG 62.743 68.421 0.00 0.00 40.04 5.03
217 218 4.383602 GCGCGACACGTGGCAAAT 62.384 61.111 23.63 0.00 46.11 2.32
218 219 2.499520 CGCGACACGTGGCAAATG 60.500 61.111 23.63 5.86 36.87 2.32
219 220 2.126888 GCGACACGTGGCAAATGG 60.127 61.111 23.63 5.43 34.31 3.16
220 221 2.126888 CGACACGTGGCAAATGGC 60.127 61.111 23.63 0.00 43.74 4.40
221 222 2.616330 CGACACGTGGCAAATGGCT 61.616 57.895 23.63 0.00 44.01 4.75
222 223 1.081242 GACACGTGGCAAATGGCTG 60.081 57.895 18.77 3.73 44.01 4.85
223 224 1.514678 GACACGTGGCAAATGGCTGA 61.515 55.000 18.77 0.00 44.01 4.26
224 225 1.210931 CACGTGGCAAATGGCTGAG 59.789 57.895 7.95 2.59 44.01 3.35
225 226 1.073025 ACGTGGCAAATGGCTGAGA 59.927 52.632 8.50 0.00 44.01 3.27
226 227 0.957395 ACGTGGCAAATGGCTGAGAG 60.957 55.000 8.50 0.00 44.01 3.20
227 228 1.509923 GTGGCAAATGGCTGAGAGC 59.490 57.895 8.50 0.00 44.01 4.09
228 229 2.042259 TGGCAAATGGCTGAGAGCG 61.042 57.895 8.50 0.00 43.62 5.03
229 230 2.101770 GCAAATGGCTGAGAGCGC 59.898 61.111 0.00 0.00 43.62 5.92
230 231 2.402388 CAAATGGCTGAGAGCGCG 59.598 61.111 0.00 0.00 43.62 6.86
231 232 3.503363 AAATGGCTGAGAGCGCGC 61.503 61.111 26.66 26.66 43.62 6.86
236 237 3.503363 GCTGAGAGCGCGCCAAAT 61.503 61.111 30.33 9.44 0.00 2.32
237 238 2.402388 CTGAGAGCGCGCCAAATG 59.598 61.111 30.33 12.20 0.00 2.32
238 239 3.104602 CTGAGAGCGCGCCAAATGG 62.105 63.158 30.33 10.38 38.53 3.16
248 249 3.501396 CCAAATGGCGCTGATCGT 58.499 55.556 7.64 0.00 41.07 3.73
249 250 1.802636 CCAAATGGCGCTGATCGTT 59.197 52.632 7.64 0.00 41.07 3.85
250 251 0.523968 CCAAATGGCGCTGATCGTTG 60.524 55.000 7.64 3.72 41.07 4.10
251 252 1.135699 CAAATGGCGCTGATCGTTGC 61.136 55.000 7.64 0.00 41.07 4.17
257 258 3.876300 GCTGATCGTTGCGAGGTT 58.124 55.556 0.00 0.00 39.91 3.50
258 259 1.710339 GCTGATCGTTGCGAGGTTC 59.290 57.895 0.00 0.00 39.91 3.62
259 260 1.696832 GCTGATCGTTGCGAGGTTCC 61.697 60.000 2.95 0.00 39.91 3.62
260 261 1.079405 TGATCGTTGCGAGGTTCCC 60.079 57.895 2.95 0.00 39.91 3.97
261 262 2.125673 ATCGTTGCGAGGTTCCCG 60.126 61.111 0.00 0.00 39.91 5.14
262 263 2.552585 GATCGTTGCGAGGTTCCCGA 62.553 60.000 0.00 0.00 39.91 5.14
263 264 2.162338 ATCGTTGCGAGGTTCCCGAA 62.162 55.000 0.00 0.00 39.91 4.30
264 265 2.380410 CGTTGCGAGGTTCCCGAAG 61.380 63.158 0.00 0.00 0.00 3.79
277 278 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
278 279 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
279 280 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
280 281 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
281 282 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
282 283 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
283 284 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
284 285 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
285 286 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
286 287 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
287 288 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
288 289 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
289 290 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
290 291 2.527100 CTCGTTAACTAGTTGCTCCCG 58.473 52.381 18.56 11.89 0.00 5.14
291 292 1.203052 TCGTTAACTAGTTGCTCCCGG 59.797 52.381 18.56 0.00 0.00 5.73
292 293 1.067354 CGTTAACTAGTTGCTCCCGGT 60.067 52.381 18.56 0.00 0.00 5.28
293 294 2.611224 CGTTAACTAGTTGCTCCCGGTT 60.611 50.000 18.56 0.00 0.00 4.44
294 295 2.998670 GTTAACTAGTTGCTCCCGGTTC 59.001 50.000 18.56 0.00 0.00 3.62
295 296 1.349067 AACTAGTTGCTCCCGGTTCT 58.651 50.000 7.48 0.00 0.00 3.01
296 297 1.349067 ACTAGTTGCTCCCGGTTCTT 58.651 50.000 0.00 0.00 0.00 2.52
297 298 1.275573 ACTAGTTGCTCCCGGTTCTTC 59.724 52.381 0.00 0.00 0.00 2.87
298 299 0.611714 TAGTTGCTCCCGGTTCTTCC 59.388 55.000 0.00 0.00 0.00 3.46
299 300 1.128188 AGTTGCTCCCGGTTCTTCCT 61.128 55.000 0.00 0.00 0.00 3.36
300 301 0.673956 GTTGCTCCCGGTTCTTCCTC 60.674 60.000 0.00 0.00 0.00 3.71
301 302 2.167398 TTGCTCCCGGTTCTTCCTCG 62.167 60.000 0.00 0.00 0.00 4.63
302 303 2.184579 CTCCCGGTTCTTCCTCGC 59.815 66.667 0.00 0.00 0.00 5.03
303 304 3.701604 CTCCCGGTTCTTCCTCGCG 62.702 68.421 0.00 0.00 0.00 5.87
304 305 4.814294 CCCGGTTCTTCCTCGCGG 62.814 72.222 6.13 0.00 0.00 6.46
305 306 3.755628 CCGGTTCTTCCTCGCGGA 61.756 66.667 6.13 0.00 37.60 5.54
306 307 2.260434 CGGTTCTTCCTCGCGGAA 59.740 61.111 6.13 6.71 46.90 4.30
313 314 2.272923 TTCCTCGCGGAATCAGACA 58.727 52.632 6.13 0.00 44.28 3.41
314 315 0.606096 TTCCTCGCGGAATCAGACAA 59.394 50.000 6.13 0.00 44.28 3.18
315 316 0.824109 TCCTCGCGGAATCAGACAAT 59.176 50.000 6.13 0.00 36.03 2.71
316 317 0.933097 CCTCGCGGAATCAGACAATG 59.067 55.000 6.13 0.00 0.00 2.82
317 318 0.302890 CTCGCGGAATCAGACAATGC 59.697 55.000 6.13 0.00 0.00 3.56
318 319 1.011904 CGCGGAATCAGACAATGCG 60.012 57.895 0.00 0.00 38.04 4.73
319 320 1.297893 GCGGAATCAGACAATGCGC 60.298 57.895 0.00 0.00 31.27 6.09
320 321 1.709147 GCGGAATCAGACAATGCGCT 61.709 55.000 9.73 0.00 34.90 5.92
321 322 0.027194 CGGAATCAGACAATGCGCTG 59.973 55.000 9.73 0.99 0.00 5.18
322 323 1.372582 GGAATCAGACAATGCGCTGA 58.627 50.000 9.73 2.47 44.43 4.26
325 326 0.661552 ATCAGACAATGCGCTGATGC 59.338 50.000 15.38 1.92 46.86 3.91
335 336 2.125391 GCTGATGCGCTGGACAGA 60.125 61.111 20.64 0.00 32.90 3.41
336 337 1.742880 GCTGATGCGCTGGACAGAA 60.743 57.895 20.64 0.00 32.90 3.02
337 338 1.975363 GCTGATGCGCTGGACAGAAC 61.975 60.000 20.64 6.69 32.90 3.01
338 339 1.690283 CTGATGCGCTGGACAGAACG 61.690 60.000 9.73 0.00 32.90 3.95
339 340 1.446099 GATGCGCTGGACAGAACGA 60.446 57.895 9.73 0.00 0.00 3.85
340 341 1.416813 GATGCGCTGGACAGAACGAG 61.417 60.000 9.73 0.00 0.00 4.18
341 342 1.877576 ATGCGCTGGACAGAACGAGA 61.878 55.000 9.73 0.00 0.00 4.04
342 343 1.803519 GCGCTGGACAGAACGAGAG 60.804 63.158 0.00 0.00 0.00 3.20
343 344 1.803519 CGCTGGACAGAACGAGAGC 60.804 63.158 3.00 0.00 0.00 4.09
344 345 1.446966 GCTGGACAGAACGAGAGCC 60.447 63.158 3.00 0.00 0.00 4.70
345 346 1.216710 CTGGACAGAACGAGAGCCC 59.783 63.158 0.00 0.00 0.00 5.19
346 347 1.533033 TGGACAGAACGAGAGCCCA 60.533 57.895 0.00 0.00 0.00 5.36
347 348 1.216710 GGACAGAACGAGAGCCCAG 59.783 63.158 0.00 0.00 0.00 4.45
348 349 1.446966 GACAGAACGAGAGCCCAGC 60.447 63.158 0.00 0.00 0.00 4.85
349 350 2.125350 CAGAACGAGAGCCCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
350 351 3.394836 AGAACGAGAGCCCAGCCC 61.395 66.667 0.00 0.00 0.00 5.19
351 352 3.706373 GAACGAGAGCCCAGCCCA 61.706 66.667 0.00 0.00 0.00 5.36
352 353 3.249189 AACGAGAGCCCAGCCCAA 61.249 61.111 0.00 0.00 0.00 4.12
353 354 3.553095 AACGAGAGCCCAGCCCAAC 62.553 63.158 0.00 0.00 0.00 3.77
354 355 3.710722 CGAGAGCCCAGCCCAACT 61.711 66.667 0.00 0.00 0.00 3.16
355 356 2.359169 CGAGAGCCCAGCCCAACTA 61.359 63.158 0.00 0.00 0.00 2.24
356 357 1.524482 GAGAGCCCAGCCCAACTAG 59.476 63.158 0.00 0.00 0.00 2.57
357 358 2.124529 GAGCCCAGCCCAACTAGC 60.125 66.667 0.00 0.00 0.00 3.42
358 359 2.612115 AGCCCAGCCCAACTAGCT 60.612 61.111 0.00 0.00 42.70 3.32
359 360 2.203549 GAGCCCAGCCCAACTAGCTT 62.204 60.000 0.00 0.00 38.95 3.74
360 361 1.304464 GCCCAGCCCAACTAGCTTT 60.304 57.895 0.00 0.00 38.95 3.51
361 362 0.900182 GCCCAGCCCAACTAGCTTTT 60.900 55.000 0.00 0.00 38.95 2.27
362 363 0.890683 CCCAGCCCAACTAGCTTTTG 59.109 55.000 0.00 0.00 38.95 2.44
363 364 0.890683 CCAGCCCAACTAGCTTTTGG 59.109 55.000 16.53 16.53 42.90 3.28
364 365 1.547675 CCAGCCCAACTAGCTTTTGGA 60.548 52.381 22.56 0.00 45.69 3.53
365 366 2.450476 CAGCCCAACTAGCTTTTGGAT 58.550 47.619 22.56 11.54 45.69 3.41
366 367 2.165030 CAGCCCAACTAGCTTTTGGATG 59.835 50.000 22.56 17.32 45.69 3.51
367 368 2.171003 GCCCAACTAGCTTTTGGATGT 58.829 47.619 22.56 0.00 45.69 3.06
368 369 3.010138 AGCCCAACTAGCTTTTGGATGTA 59.990 43.478 22.56 0.00 45.69 2.29
369 370 3.378427 GCCCAACTAGCTTTTGGATGTAG 59.622 47.826 22.56 10.45 45.69 2.74
370 371 4.843728 CCCAACTAGCTTTTGGATGTAGA 58.156 43.478 22.56 0.00 45.69 2.59
371 372 5.440610 CCCAACTAGCTTTTGGATGTAGAT 58.559 41.667 22.56 0.00 45.69 1.98
372 373 6.591935 CCCAACTAGCTTTTGGATGTAGATA 58.408 40.000 22.56 0.00 45.69 1.98
373 374 6.708054 CCCAACTAGCTTTTGGATGTAGATAG 59.292 42.308 22.56 0.00 45.69 2.08
374 375 6.708054 CCAACTAGCTTTTGGATGTAGATAGG 59.292 42.308 18.02 0.00 45.69 2.57
375 376 5.859495 ACTAGCTTTTGGATGTAGATAGGC 58.141 41.667 0.00 0.00 33.40 3.93
376 377 4.092116 AGCTTTTGGATGTAGATAGGCC 57.908 45.455 0.00 0.00 0.00 5.19
377 378 3.149981 GCTTTTGGATGTAGATAGGCCC 58.850 50.000 0.00 0.00 0.00 5.80
378 379 3.435026 GCTTTTGGATGTAGATAGGCCCA 60.435 47.826 0.00 0.00 0.00 5.36
379 380 4.792068 CTTTTGGATGTAGATAGGCCCAA 58.208 43.478 0.00 0.00 32.48 4.12
380 381 3.857157 TTGGATGTAGATAGGCCCAAC 57.143 47.619 0.00 0.00 0.00 3.77
381 382 2.054799 TGGATGTAGATAGGCCCAACC 58.945 52.381 0.00 0.00 39.61 3.77
382 383 1.351350 GGATGTAGATAGGCCCAACCC 59.649 57.143 0.00 0.00 40.58 4.11
383 384 2.054799 GATGTAGATAGGCCCAACCCA 58.945 52.381 0.00 0.00 40.58 4.51
384 385 1.974028 TGTAGATAGGCCCAACCCAA 58.026 50.000 0.00 0.00 40.58 4.12
385 386 1.562475 TGTAGATAGGCCCAACCCAAC 59.438 52.381 0.00 0.00 40.58 3.77
386 387 1.844497 GTAGATAGGCCCAACCCAACT 59.156 52.381 0.00 0.00 40.58 3.16
387 388 2.280308 AGATAGGCCCAACCCAACTA 57.720 50.000 0.00 0.00 40.58 2.24
388 389 1.844497 AGATAGGCCCAACCCAACTAC 59.156 52.381 0.00 0.00 40.58 2.73
389 390 1.562475 GATAGGCCCAACCCAACTACA 59.438 52.381 0.00 0.00 40.58 2.74
390 391 1.676248 TAGGCCCAACCCAACTACAT 58.324 50.000 0.00 0.00 40.58 2.29
391 392 0.783850 AGGCCCAACCCAACTACATT 59.216 50.000 0.00 0.00 40.58 2.71
392 393 1.149077 AGGCCCAACCCAACTACATTT 59.851 47.619 0.00 0.00 40.58 2.32
393 394 1.974957 GGCCCAACCCAACTACATTTT 59.025 47.619 0.00 0.00 0.00 1.82
394 395 2.289382 GGCCCAACCCAACTACATTTTG 60.289 50.000 0.00 0.00 0.00 2.44
395 396 2.367241 GCCCAACCCAACTACATTTTGT 59.633 45.455 0.00 0.00 0.00 2.83
396 397 3.574826 GCCCAACCCAACTACATTTTGTA 59.425 43.478 0.00 0.00 0.00 2.41
397 398 4.559906 GCCCAACCCAACTACATTTTGTAC 60.560 45.833 0.00 0.00 0.00 2.90
398 399 4.585162 CCCAACCCAACTACATTTTGTACA 59.415 41.667 0.00 0.00 0.00 2.90
399 400 5.245075 CCCAACCCAACTACATTTTGTACAT 59.755 40.000 0.00 0.00 0.00 2.29
400 401 6.239458 CCCAACCCAACTACATTTTGTACATT 60.239 38.462 0.00 0.00 0.00 2.71
401 402 6.866248 CCAACCCAACTACATTTTGTACATTC 59.134 38.462 0.00 0.00 0.00 2.67
402 403 7.255801 CCAACCCAACTACATTTTGTACATTCT 60.256 37.037 0.00 0.00 0.00 2.40
403 404 7.448748 ACCCAACTACATTTTGTACATTCTC 57.551 36.000 0.00 0.00 0.00 2.87
404 405 6.433093 ACCCAACTACATTTTGTACATTCTCC 59.567 38.462 0.00 0.00 0.00 3.71
405 406 6.432783 CCCAACTACATTTTGTACATTCTCCA 59.567 38.462 0.00 0.00 0.00 3.86
406 407 7.362056 CCCAACTACATTTTGTACATTCTCCAG 60.362 40.741 0.00 0.00 0.00 3.86
407 408 7.362056 CCAACTACATTTTGTACATTCTCCAGG 60.362 40.741 0.00 0.00 0.00 4.45
408 409 5.648092 ACTACATTTTGTACATTCTCCAGGC 59.352 40.000 0.00 0.00 0.00 4.85
409 410 3.763897 ACATTTTGTACATTCTCCAGGCC 59.236 43.478 0.00 0.00 0.00 5.19
410 411 2.507407 TTTGTACATTCTCCAGGCCC 57.493 50.000 0.00 0.00 0.00 5.80
411 412 1.367346 TTGTACATTCTCCAGGCCCA 58.633 50.000 0.00 0.00 0.00 5.36
412 413 1.367346 TGTACATTCTCCAGGCCCAA 58.633 50.000 0.00 0.00 0.00 4.12
413 414 1.004277 TGTACATTCTCCAGGCCCAAC 59.996 52.381 0.00 0.00 0.00 3.77
414 415 1.004277 GTACATTCTCCAGGCCCAACA 59.996 52.381 0.00 0.00 0.00 3.33
415 416 0.251341 ACATTCTCCAGGCCCAACAC 60.251 55.000 0.00 0.00 0.00 3.32
416 417 0.251297 CATTCTCCAGGCCCAACACA 60.251 55.000 0.00 0.00 0.00 3.72
417 418 0.482446 ATTCTCCAGGCCCAACACAA 59.518 50.000 0.00 0.00 0.00 3.33
418 419 0.467290 TTCTCCAGGCCCAACACAAC 60.467 55.000 0.00 0.00 0.00 3.32
419 420 1.151450 CTCCAGGCCCAACACAACT 59.849 57.895 0.00 0.00 0.00 3.16
420 421 0.400213 CTCCAGGCCCAACACAACTA 59.600 55.000 0.00 0.00 0.00 2.24
421 422 0.109723 TCCAGGCCCAACACAACTAC 59.890 55.000 0.00 0.00 0.00 2.73
422 423 0.110486 CCAGGCCCAACACAACTACT 59.890 55.000 0.00 0.00 0.00 2.57
423 424 1.523758 CAGGCCCAACACAACTACTC 58.476 55.000 0.00 0.00 0.00 2.59
424 425 0.400594 AGGCCCAACACAACTACTCC 59.599 55.000 0.00 0.00 0.00 3.85
425 426 0.608308 GGCCCAACACAACTACTCCC 60.608 60.000 0.00 0.00 0.00 4.30
426 427 0.400594 GCCCAACACAACTACTCCCT 59.599 55.000 0.00 0.00 0.00 4.20
427 428 1.610886 GCCCAACACAACTACTCCCTC 60.611 57.143 0.00 0.00 0.00 4.30
428 429 1.003233 CCCAACACAACTACTCCCTCC 59.997 57.143 0.00 0.00 0.00 4.30
429 430 1.337823 CCAACACAACTACTCCCTCCG 60.338 57.143 0.00 0.00 0.00 4.63
430 431 1.343465 CAACACAACTACTCCCTCCGT 59.657 52.381 0.00 0.00 0.00 4.69
431 432 1.713297 ACACAACTACTCCCTCCGTT 58.287 50.000 0.00 0.00 0.00 4.44
432 433 1.617357 ACACAACTACTCCCTCCGTTC 59.383 52.381 0.00 0.00 0.00 3.95
433 434 1.067071 CACAACTACTCCCTCCGTTCC 60.067 57.143 0.00 0.00 0.00 3.62
434 435 1.263356 CAACTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
435 436 1.621814 CAACTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
436 437 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
437 438 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
438 439 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
439 440 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
440 441 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
441 442 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
442 443 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
443 444 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
444 445 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
445 446 4.130118 CCCTCCGTTCCAAAATAGATGAG 58.870 47.826 0.00 0.00 0.00 2.90
446 447 4.384208 CCCTCCGTTCCAAAATAGATGAGT 60.384 45.833 0.00 0.00 0.00 3.41
447 448 4.811557 CCTCCGTTCCAAAATAGATGAGTC 59.188 45.833 0.00 0.00 0.00 3.36
448 449 5.414789 TCCGTTCCAAAATAGATGAGTCA 57.585 39.130 0.00 0.00 0.00 3.41
449 450 5.800296 TCCGTTCCAAAATAGATGAGTCAA 58.200 37.500 0.00 0.00 0.00 3.18
450 451 5.642063 TCCGTTCCAAAATAGATGAGTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
451 452 5.643777 CCGTTCCAAAATAGATGAGTCAACT 59.356 40.000 8.12 8.12 0.00 3.16
452 453 6.149474 CCGTTCCAAAATAGATGAGTCAACTT 59.851 38.462 8.34 0.00 0.00 2.66
453 454 7.308589 CCGTTCCAAAATAGATGAGTCAACTTT 60.309 37.037 8.34 0.00 0.00 2.66
454 455 7.535258 CGTTCCAAAATAGATGAGTCAACTTTG 59.465 37.037 8.34 7.19 0.00 2.77
455 456 8.352942 GTTCCAAAATAGATGAGTCAACTTTGT 58.647 33.333 8.34 0.00 0.00 2.83
456 457 9.567776 TTCCAAAATAGATGAGTCAACTTTGTA 57.432 29.630 8.34 0.00 0.00 2.41
457 458 8.999431 TCCAAAATAGATGAGTCAACTTTGTAC 58.001 33.333 8.34 0.00 0.00 2.90
458 459 9.003658 CCAAAATAGATGAGTCAACTTTGTACT 57.996 33.333 8.34 0.00 0.00 2.73
495 496 8.970691 AAATTTGAGTCATCTATTTTGGAACG 57.029 30.769 0.00 0.00 0.00 3.95
496 497 6.494893 TTTGAGTCATCTATTTTGGAACGG 57.505 37.500 0.00 0.00 0.00 4.44
497 498 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
498 499 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
499 500 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
500 501 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
501 502 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
502 503 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
575 584 3.231734 GCAAATTGCTCAAACCCCC 57.768 52.632 11.19 0.00 40.96 5.40
620 632 1.675641 GGTGCTGCATTCCCGAACT 60.676 57.895 5.27 0.00 0.00 3.01
624 636 1.429148 GCTGCATTCCCGAACTACCG 61.429 60.000 0.00 0.00 0.00 4.02
627 639 1.287425 GCATTCCCGAACTACCGAAG 58.713 55.000 0.00 0.00 0.00 3.79
882 894 1.134371 GGTGAGCTGGACAGGGATTAC 60.134 57.143 0.00 0.00 0.00 1.89
894 906 4.082125 ACAGGGATTACTTGCTTCTTTGG 58.918 43.478 0.00 0.00 0.00 3.28
955 972 1.484653 GAAGCCTCTCCTTCCTCTTCC 59.515 57.143 0.00 0.00 36.15 3.46
974 991 1.347817 CGTCTCGTCAGGCAAGCTTC 61.348 60.000 0.00 0.00 0.00 3.86
1047 1094 2.759795 GCAGCACCTTCCCCTTCT 59.240 61.111 0.00 0.00 0.00 2.85
1178 1225 1.404181 CGGCGACCAAGATTTCTCTGA 60.404 52.381 0.00 0.00 0.00 3.27
1190 1237 5.258051 AGATTTCTCTGACGTAACTCTCCT 58.742 41.667 0.00 0.00 0.00 3.69
1237 1291 8.713271 GTTCATATACTTGGATTGCTTAGCTAC 58.287 37.037 5.60 0.00 0.00 3.58
1276 1336 0.658897 GGTTAGAGCGACGAGGAGAG 59.341 60.000 0.00 0.00 0.00 3.20
1323 1383 1.422531 AGAGGAGGATGATGGTGAGC 58.577 55.000 0.00 0.00 0.00 4.26
1444 1519 7.934855 ACTTTACAATCTGCTTCATGATCTT 57.065 32.000 0.00 0.00 0.00 2.40
1450 1525 6.183360 ACAATCTGCTTCATGATCTTACTTGC 60.183 38.462 0.00 0.00 0.00 4.01
1470 1545 6.652900 ACTTGCATTTCTTCTCTTCTAGTTCC 59.347 38.462 0.00 0.00 0.00 3.62
1482 1557 2.888594 TCTAGTTCCGCATAAGCACAC 58.111 47.619 0.00 0.00 42.27 3.82
1574 1652 3.807553 CCAGGCAGTCAAAAACCAAAAT 58.192 40.909 0.00 0.00 0.00 1.82
1749 1893 0.468226 TCTCCCATGGCCGTAACATC 59.532 55.000 6.09 0.00 0.00 3.06
1757 1907 1.557371 TGGCCGTAACATCCATCTTCA 59.443 47.619 0.00 0.00 0.00 3.02
1808 1958 3.301794 AGAATGCATGATTGTAGGCCA 57.698 42.857 5.01 0.00 0.00 5.36
1875 2025 2.560981 TCAAGGTTCTGCAGTCACGATA 59.439 45.455 14.67 0.00 0.00 2.92
1895 2045 6.033341 CGATAAGGAGATAGAGCAAGCATAC 58.967 44.000 0.00 0.00 0.00 2.39
1913 2063 2.065993 ACGTTGATCTGTTGGACTCG 57.934 50.000 0.00 0.00 0.00 4.18
2161 2437 2.093152 CCTCGAAACGTTTGGTAATCCG 59.907 50.000 20.10 13.57 36.30 4.18
2168 2444 3.588955 ACGTTTGGTAATCCGGACTTAC 58.411 45.455 6.12 16.06 36.30 2.34
2169 2445 2.931969 CGTTTGGTAATCCGGACTTACC 59.068 50.000 29.86 29.86 45.53 2.85
2521 2814 0.591170 GTGGCGCTGCTACTTTTTCA 59.409 50.000 7.64 0.00 37.08 2.69
2531 2824 7.096230 GCGCTGCTACTTTTTCATTTCTTTTTA 60.096 33.333 0.00 0.00 0.00 1.52
2675 3053 3.560068 CACCATACTGGCGAATCCTTAAC 59.440 47.826 0.00 0.00 42.67 2.01
2813 3191 5.689383 TCTAGAACTTGTCAAATTGCACC 57.311 39.130 0.00 0.00 0.00 5.01
2869 3247 7.877612 TCTTCTTGACTTTCTGCACATATACAA 59.122 33.333 0.00 0.00 0.00 2.41
3103 3484 0.111253 ACCTCTGCTTTCCCCTGTTG 59.889 55.000 0.00 0.00 0.00 3.33
3104 3485 0.111253 CCTCTGCTTTCCCCTGTTGT 59.889 55.000 0.00 0.00 0.00 3.32
3105 3486 1.351017 CCTCTGCTTTCCCCTGTTGTA 59.649 52.381 0.00 0.00 0.00 2.41
3123 3504 7.441157 CCTGTTGTACTTGTATGAGAACAGAAA 59.559 37.037 14.90 0.00 40.71 2.52
3249 3630 7.988937 AGATTCATCTATTATAAAGGGCCACA 58.011 34.615 6.18 0.00 34.85 4.17
3388 3770 9.196552 AGTTAAATTATTTCAAGCTTGCTTGTC 57.803 29.630 27.61 3.26 35.91 3.18
3428 3817 8.596271 TTCAGATTTCGTGTTATGTGTTCTAA 57.404 30.769 0.00 0.00 0.00 2.10
3814 4251 4.072088 GTTGACCGCCGTGCTTCG 62.072 66.667 0.00 0.00 39.52 3.79
3885 4325 4.464008 TCCATGGAATTGCTATCAACCTC 58.536 43.478 13.46 0.00 34.60 3.85
4045 4492 9.458374 GGTCTGATTTAAGAAACGATTCAAAAA 57.542 29.630 8.22 7.71 38.06 1.94
4086 4537 9.747293 AAGATTTAGCTATTCCTTCTTACGTAC 57.253 33.333 0.00 0.00 0.00 3.67
4087 4538 9.134055 AGATTTAGCTATTCCTTCTTACGTACT 57.866 33.333 0.00 0.00 0.00 2.73
4088 4539 9.747293 GATTTAGCTATTCCTTCTTACGTACTT 57.253 33.333 0.00 0.00 0.00 2.24
4089 4540 9.747293 ATTTAGCTATTCCTTCTTACGTACTTC 57.253 33.333 0.00 0.00 0.00 3.01
4090 4541 6.146601 AGCTATTCCTTCTTACGTACTTCC 57.853 41.667 0.00 0.00 0.00 3.46
4091 4542 5.892686 AGCTATTCCTTCTTACGTACTTCCT 59.107 40.000 0.00 0.00 0.00 3.36
4092 4543 6.039605 AGCTATTCCTTCTTACGTACTTCCTC 59.960 42.308 0.00 0.00 0.00 3.71
4093 4544 5.595257 ATTCCTTCTTACGTACTTCCTCC 57.405 43.478 0.00 0.00 0.00 4.30
4094 4545 3.012518 TCCTTCTTACGTACTTCCTCCG 58.987 50.000 0.00 0.00 0.00 4.63
4095 4546 2.751806 CCTTCTTACGTACTTCCTCCGT 59.248 50.000 0.00 0.00 38.53 4.69
4096 4547 3.192212 CCTTCTTACGTACTTCCTCCGTT 59.808 47.826 0.00 0.00 36.12 4.44
4097 4548 4.410448 CTTCTTACGTACTTCCTCCGTTC 58.590 47.826 0.00 0.00 36.12 3.95
4098 4549 2.749621 TCTTACGTACTTCCTCCGTTCC 59.250 50.000 0.00 0.00 36.12 3.62
4099 4550 2.198827 TACGTACTTCCTCCGTTCCA 57.801 50.000 0.00 0.00 36.12 3.53
4100 4551 0.600057 ACGTACTTCCTCCGTTCCAC 59.400 55.000 0.00 0.00 0.00 4.02
4101 4552 0.599558 CGTACTTCCTCCGTTCCACA 59.400 55.000 0.00 0.00 0.00 4.17
4102 4553 1.000060 CGTACTTCCTCCGTTCCACAA 60.000 52.381 0.00 0.00 0.00 3.33
4103 4554 2.353406 CGTACTTCCTCCGTTCCACAAT 60.353 50.000 0.00 0.00 0.00 2.71
4104 4555 3.119388 CGTACTTCCTCCGTTCCACAATA 60.119 47.826 0.00 0.00 0.00 1.90
4105 4556 4.441079 CGTACTTCCTCCGTTCCACAATAT 60.441 45.833 0.00 0.00 0.00 1.28
4106 4557 5.221106 CGTACTTCCTCCGTTCCACAATATA 60.221 44.000 0.00 0.00 0.00 0.86
4107 4558 5.687166 ACTTCCTCCGTTCCACAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
4108 4559 5.671493 ACTTCCTCCGTTCCACAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
4109 4560 5.424252 ACTTCCTCCGTTCCACAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
4110 4561 6.099845 ACTTCCTCCGTTCCACAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
4111 4562 6.097915 TCCTCCGTTCCACAATATAAGATC 57.902 41.667 0.00 0.00 0.00 2.75
4112 4563 5.600898 TCCTCCGTTCCACAATATAAGATCA 59.399 40.000 0.00 0.00 0.00 2.92
4113 4564 6.270000 TCCTCCGTTCCACAATATAAGATCAT 59.730 38.462 0.00 0.00 0.00 2.45
4114 4565 6.936900 CCTCCGTTCCACAATATAAGATCATT 59.063 38.462 0.00 0.00 0.00 2.57
4115 4566 7.445402 CCTCCGTTCCACAATATAAGATCATTT 59.555 37.037 0.00 0.00 0.00 2.32
4116 4567 8.378172 TCCGTTCCACAATATAAGATCATTTC 57.622 34.615 0.00 0.00 0.00 2.17
4117 4568 7.990314 TCCGTTCCACAATATAAGATCATTTCA 59.010 33.333 0.00 0.00 0.00 2.69
4118 4569 8.620416 CCGTTCCACAATATAAGATCATTTCAA 58.380 33.333 0.00 0.00 0.00 2.69
4119 4570 9.438291 CGTTCCACAATATAAGATCATTTCAAC 57.562 33.333 0.00 0.00 0.00 3.18
4120 4571 9.736023 GTTCCACAATATAAGATCATTTCAACC 57.264 33.333 0.00 0.00 0.00 3.77
4121 4572 9.699410 TTCCACAATATAAGATCATTTCAACCT 57.301 29.630 0.00 0.00 0.00 3.50
4131 4582 8.814038 AAGATCATTTCAACCTATGTTAGCTT 57.186 30.769 0.00 0.00 32.09 3.74
4132 4583 8.218338 AGATCATTTCAACCTATGTTAGCTTG 57.782 34.615 0.00 0.00 32.09 4.01
4133 4584 8.049117 AGATCATTTCAACCTATGTTAGCTTGA 58.951 33.333 0.00 0.00 30.66 3.02
4134 4585 7.994425 TCATTTCAACCTATGTTAGCTTGAA 57.006 32.000 0.00 0.00 38.13 2.69
4135 4586 8.402798 TCATTTCAACCTATGTTAGCTTGAAA 57.597 30.769 15.05 15.05 46.21 2.69
4136 4587 8.855110 TCATTTCAACCTATGTTAGCTTGAAAA 58.145 29.630 16.01 4.69 45.73 2.29
4137 4588 9.474920 CATTTCAACCTATGTTAGCTTGAAAAA 57.525 29.630 16.01 2.55 45.73 1.94
4138 4589 8.865590 TTTCAACCTATGTTAGCTTGAAAAAC 57.134 30.769 12.18 0.00 42.67 2.43
4139 4590 6.664515 TCAACCTATGTTAGCTTGAAAAACG 58.335 36.000 0.00 0.00 29.87 3.60
4140 4591 6.261381 TCAACCTATGTTAGCTTGAAAAACGT 59.739 34.615 0.00 0.00 29.87 3.99
4141 4592 6.628919 ACCTATGTTAGCTTGAAAAACGTT 57.371 33.333 0.00 0.00 0.00 3.99
4142 4593 6.665465 ACCTATGTTAGCTTGAAAAACGTTC 58.335 36.000 0.00 0.00 0.00 3.95
4143 4594 6.485648 ACCTATGTTAGCTTGAAAAACGTTCT 59.514 34.615 0.00 0.00 0.00 3.01
4144 4595 7.012989 ACCTATGTTAGCTTGAAAAACGTTCTT 59.987 33.333 0.00 0.00 0.00 2.52
4145 4596 8.500773 CCTATGTTAGCTTGAAAAACGTTCTTA 58.499 33.333 0.00 0.00 0.00 2.10
4152 4603 8.728088 AGCTTGAAAAACGTTCTTATATTGTG 57.272 30.769 0.00 0.00 0.00 3.33
4153 4604 7.807907 AGCTTGAAAAACGTTCTTATATTGTGG 59.192 33.333 0.00 0.00 0.00 4.17
4154 4605 7.061789 GCTTGAAAAACGTTCTTATATTGTGGG 59.938 37.037 0.00 0.00 0.00 4.61
4155 4606 7.747155 TGAAAAACGTTCTTATATTGTGGGA 57.253 32.000 0.00 0.00 0.00 4.37
4156 4607 7.586747 TGAAAAACGTTCTTATATTGTGGGAC 58.413 34.615 0.00 0.00 0.00 4.46
4157 4608 5.789710 AAACGTTCTTATATTGTGGGACG 57.210 39.130 0.00 0.00 0.00 4.79
4158 4609 3.788937 ACGTTCTTATATTGTGGGACGG 58.211 45.455 0.00 0.00 0.00 4.79
4159 4610 3.448301 ACGTTCTTATATTGTGGGACGGA 59.552 43.478 0.00 0.00 0.00 4.69
4160 4611 4.049186 CGTTCTTATATTGTGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
4161 4612 4.377897 GTTCTTATATTGTGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
4162 4613 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4163 4614 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4164 4615 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4165 4616 0.337082 TATTGTGGGACGGAGGGAGA 59.663 55.000 0.00 0.00 0.00 3.71
4166 4617 0.546747 ATTGTGGGACGGAGGGAGAA 60.547 55.000 0.00 0.00 0.00 2.87
4231 4682 5.922544 GCAGTGAAGCAAAATTGTTGTATCT 59.077 36.000 0.00 0.00 0.00 1.98
4242 4693 4.919774 TTGTTGTATCTTTGGGCCTAGA 57.080 40.909 4.53 8.31 0.00 2.43
4293 4746 7.219322 TCTGTGTGATGGATGGTATAATTCAG 58.781 38.462 0.00 0.00 0.00 3.02
4296 4749 8.219868 TGTGTGATGGATGGTATAATTCAGATT 58.780 33.333 0.00 0.00 0.00 2.40
4298 4751 8.439172 TGTGATGGATGGTATAATTCAGATTCA 58.561 33.333 0.00 0.00 0.00 2.57
4318 5089 7.900246 AGATTCACATGGGAGTGATATAGATCT 59.100 37.037 0.00 0.00 46.90 2.75
4321 5092 7.933223 TCACATGGGAGTGATATAGATCTCTA 58.067 38.462 0.00 0.00 43.18 2.43
4325 5096 6.184068 TGGGAGTGATATAGATCTCTACTGC 58.816 44.000 10.61 5.68 36.92 4.40
4348 5119 2.924640 CTGGAGATGGGCCAGCAT 59.075 61.111 25.61 9.11 45.66 3.79
4392 5163 4.012895 AACTTGCGGTTCTGCGCG 62.013 61.111 0.00 0.00 37.81 6.86
4485 5256 1.751351 TCAACACGGCAACCAATGAAA 59.249 42.857 0.00 0.00 0.00 2.69
4518 5289 1.341187 TGCATGGATTGACATGGAGCA 60.341 47.619 8.11 0.00 46.40 4.26
4568 5339 4.851639 ATCTAACAGATGGTGCCTTCTT 57.148 40.909 4.14 0.00 32.80 2.52
4578 5349 0.984995 GTGCCTTCTTGGGGTAGTCT 59.015 55.000 0.00 0.00 36.00 3.24
4613 5384 2.775890 CTTCAGCTGGTTGATGTGACT 58.224 47.619 15.13 0.00 33.14 3.41
4632 5409 1.273606 CTCTCATGGACAGTCGGTTGT 59.726 52.381 0.00 0.00 0.00 3.32
4687 5464 6.650807 TGGCAATAACTGAAAGAAGAGTAGTG 59.349 38.462 0.00 0.00 37.43 2.74
4693 5470 7.584122 AACTGAAAGAAGAGTAGTGTGACTA 57.416 36.000 0.00 0.00 37.43 2.59
4730 5569 9.476202 AAATAGAACAGGAAGCAAACATTTTAC 57.524 29.630 0.00 0.00 0.00 2.01
4731 5570 6.715347 AGAACAGGAAGCAAACATTTTACT 57.285 33.333 0.00 0.00 0.00 2.24
4734 5573 5.831997 ACAGGAAGCAAACATTTTACTGTC 58.168 37.500 0.00 0.00 31.68 3.51
4737 5576 5.827797 AGGAAGCAAACATTTTACTGTCTGA 59.172 36.000 0.00 0.00 0.00 3.27
4743 5582 6.198966 GCAAACATTTTACTGTCTGAACTTGG 59.801 38.462 0.00 0.00 0.00 3.61
4814 5653 0.032540 GCCAAAAAGTCAGGTGCAGG 59.967 55.000 0.00 0.00 0.00 4.85
4873 5759 3.344215 GCCATCAGCGATCCTGCG 61.344 66.667 6.38 0.00 41.50 5.18
4909 5795 1.873591 CTAGTGGTTTTTCTGTGCGCT 59.126 47.619 9.73 0.00 0.00 5.92
4947 5833 0.462375 GCTGGTTTTTCCGGTTTGGT 59.538 50.000 0.00 0.00 44.16 3.67
5008 5894 9.730420 TTCTTTCAGTTTTCTTTTTCTATTCGG 57.270 29.630 0.00 0.00 0.00 4.30
5009 5895 9.116067 TCTTTCAGTTTTCTTTTTCTATTCGGA 57.884 29.630 0.00 0.00 0.00 4.55
5010 5896 9.899226 CTTTCAGTTTTCTTTTTCTATTCGGAT 57.101 29.630 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.348656 GTGAAAGTCACGGTTTTTCTTCC 58.651 43.478 9.52 0.00 37.67 3.46
74 75 7.860872 GGTCTTTCTTAGCTTTTCGATCAAAAA 59.139 33.333 0.00 0.00 33.40 1.94
75 76 7.360361 GGTCTTTCTTAGCTTTTCGATCAAAA 58.640 34.615 0.00 0.00 32.77 2.44
76 77 6.347402 CGGTCTTTCTTAGCTTTTCGATCAAA 60.347 38.462 0.00 0.00 0.00 2.69
77 78 5.120208 CGGTCTTTCTTAGCTTTTCGATCAA 59.880 40.000 0.00 0.00 0.00 2.57
78 79 4.625742 CGGTCTTTCTTAGCTTTTCGATCA 59.374 41.667 0.00 0.00 0.00 2.92
79 80 4.863131 TCGGTCTTTCTTAGCTTTTCGATC 59.137 41.667 0.00 0.00 0.00 3.69
80 81 4.817517 TCGGTCTTTCTTAGCTTTTCGAT 58.182 39.130 0.00 0.00 0.00 3.59
81 82 4.235360 CTCGGTCTTTCTTAGCTTTTCGA 58.765 43.478 0.00 0.00 0.00 3.71
82 83 3.368236 CCTCGGTCTTTCTTAGCTTTTCG 59.632 47.826 0.00 0.00 0.00 3.46
83 84 3.685272 CCCTCGGTCTTTCTTAGCTTTTC 59.315 47.826 0.00 0.00 0.00 2.29
84 85 3.326880 TCCCTCGGTCTTTCTTAGCTTTT 59.673 43.478 0.00 0.00 0.00 2.27
85 86 2.904434 TCCCTCGGTCTTTCTTAGCTTT 59.096 45.455 0.00 0.00 0.00 3.51
86 87 2.537143 TCCCTCGGTCTTTCTTAGCTT 58.463 47.619 0.00 0.00 0.00 3.74
87 88 2.233305 TCCCTCGGTCTTTCTTAGCT 57.767 50.000 0.00 0.00 0.00 3.32
88 89 3.329929 TTTCCCTCGGTCTTTCTTAGC 57.670 47.619 0.00 0.00 0.00 3.09
89 90 4.001652 GGTTTTCCCTCGGTCTTTCTTAG 58.998 47.826 0.00 0.00 0.00 2.18
90 91 3.391955 TGGTTTTCCCTCGGTCTTTCTTA 59.608 43.478 0.00 0.00 39.73 2.10
91 92 2.173996 TGGTTTTCCCTCGGTCTTTCTT 59.826 45.455 0.00 0.00 39.73 2.52
92 93 1.772453 TGGTTTTCCCTCGGTCTTTCT 59.228 47.619 0.00 0.00 39.73 2.52
93 94 2.265589 TGGTTTTCCCTCGGTCTTTC 57.734 50.000 0.00 0.00 39.73 2.62
94 95 2.740506 TTGGTTTTCCCTCGGTCTTT 57.259 45.000 0.00 0.00 39.73 2.52
95 96 2.691526 GTTTTGGTTTTCCCTCGGTCTT 59.308 45.455 0.00 0.00 39.73 3.01
96 97 2.304092 GTTTTGGTTTTCCCTCGGTCT 58.696 47.619 0.00 0.00 39.73 3.85
97 98 1.002142 CGTTTTGGTTTTCCCTCGGTC 60.002 52.381 0.00 0.00 39.73 4.79
98 99 1.026584 CGTTTTGGTTTTCCCTCGGT 58.973 50.000 0.00 0.00 39.73 4.69
99 100 1.002142 GACGTTTTGGTTTTCCCTCGG 60.002 52.381 0.00 0.00 39.73 4.63
100 101 1.333435 CGACGTTTTGGTTTTCCCTCG 60.333 52.381 0.00 0.00 39.73 4.63
101 102 1.941975 TCGACGTTTTGGTTTTCCCTC 59.058 47.619 0.00 0.00 39.73 4.30
102 103 2.041251 TCGACGTTTTGGTTTTCCCT 57.959 45.000 0.00 0.00 39.73 4.20
103 104 2.847959 TTCGACGTTTTGGTTTTCCC 57.152 45.000 0.00 0.00 39.73 3.97
104 105 4.201608 GGTTTTTCGACGTTTTGGTTTTCC 60.202 41.667 0.00 0.00 41.14 3.13
105 106 4.201608 GGGTTTTTCGACGTTTTGGTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
106 107 3.679025 GGGTTTTTCGACGTTTTGGTTTT 59.321 39.130 0.00 0.00 0.00 2.43
107 108 3.252400 GGGTTTTTCGACGTTTTGGTTT 58.748 40.909 0.00 0.00 0.00 3.27
108 109 2.417107 GGGGTTTTTCGACGTTTTGGTT 60.417 45.455 0.00 0.00 0.00 3.67
109 110 1.134753 GGGGTTTTTCGACGTTTTGGT 59.865 47.619 0.00 0.00 0.00 3.67
110 111 1.842720 GGGGTTTTTCGACGTTTTGG 58.157 50.000 0.00 0.00 0.00 3.28
111 112 1.468895 CGGGGTTTTTCGACGTTTTG 58.531 50.000 0.00 0.00 0.00 2.44
112 113 0.381445 CCGGGGTTTTTCGACGTTTT 59.619 50.000 0.00 0.00 0.00 2.43
113 114 0.463474 TCCGGGGTTTTTCGACGTTT 60.463 50.000 0.00 0.00 0.00 3.60
114 115 0.463474 TTCCGGGGTTTTTCGACGTT 60.463 50.000 0.00 0.00 0.00 3.99
115 116 0.463474 TTTCCGGGGTTTTTCGACGT 60.463 50.000 0.00 0.00 0.00 4.34
116 117 0.662085 TTTTCCGGGGTTTTTCGACG 59.338 50.000 0.00 0.00 0.00 5.12
117 118 2.867287 TTTTTCCGGGGTTTTTCGAC 57.133 45.000 0.00 0.00 0.00 4.20
134 135 6.073385 TGTTTTCGGCTTTTTAAACGGTTTTT 60.073 30.769 11.87 0.00 34.16 1.94
135 136 5.407691 TGTTTTCGGCTTTTTAAACGGTTTT 59.592 32.000 11.87 0.00 34.16 2.43
136 137 4.928020 TGTTTTCGGCTTTTTAAACGGTTT 59.072 33.333 11.33 11.33 34.16 3.27
137 138 4.492611 TGTTTTCGGCTTTTTAAACGGTT 58.507 34.783 0.00 0.00 34.16 4.44
138 139 4.107363 TGTTTTCGGCTTTTTAAACGGT 57.893 36.364 0.00 0.00 34.16 4.83
139 140 4.504826 ACATGTTTTCGGCTTTTTAAACGG 59.495 37.500 0.00 0.00 34.16 4.44
140 141 5.004916 ACACATGTTTTCGGCTTTTTAAACG 59.995 36.000 0.00 0.00 34.16 3.60
141 142 6.035112 TCACACATGTTTTCGGCTTTTTAAAC 59.965 34.615 0.00 0.00 0.00 2.01
142 143 6.100004 TCACACATGTTTTCGGCTTTTTAAA 58.900 32.000 0.00 0.00 0.00 1.52
143 144 5.651530 TCACACATGTTTTCGGCTTTTTAA 58.348 33.333 0.00 0.00 0.00 1.52
144 145 5.250235 TCACACATGTTTTCGGCTTTTTA 57.750 34.783 0.00 0.00 0.00 1.52
145 146 4.116747 TCACACATGTTTTCGGCTTTTT 57.883 36.364 0.00 0.00 0.00 1.94
146 147 3.791973 TCACACATGTTTTCGGCTTTT 57.208 38.095 0.00 0.00 0.00 2.27
147 148 3.791973 TTCACACATGTTTTCGGCTTT 57.208 38.095 0.00 0.00 0.00 3.51
148 149 3.791973 TTTCACACATGTTTTCGGCTT 57.208 38.095 0.00 0.00 0.00 4.35
149 150 3.791973 TTTTCACACATGTTTTCGGCT 57.208 38.095 0.00 0.00 0.00 5.52
150 151 6.517914 TTATTTTTCACACATGTTTTCGGC 57.482 33.333 0.00 0.00 0.00 5.54
167 168 9.503427 CGCTCTCTTCGGATTTTATTTTATTTT 57.497 29.630 0.00 0.00 0.00 1.82
168 169 8.674607 ACGCTCTCTTCGGATTTTATTTTATTT 58.325 29.630 0.00 0.00 0.00 1.40
169 170 8.209917 ACGCTCTCTTCGGATTTTATTTTATT 57.790 30.769 0.00 0.00 0.00 1.40
170 171 7.041984 GGACGCTCTCTTCGGATTTTATTTTAT 60.042 37.037 0.00 0.00 0.00 1.40
171 172 6.257193 GGACGCTCTCTTCGGATTTTATTTTA 59.743 38.462 0.00 0.00 0.00 1.52
172 173 5.064834 GGACGCTCTCTTCGGATTTTATTTT 59.935 40.000 0.00 0.00 0.00 1.82
173 174 4.571176 GGACGCTCTCTTCGGATTTTATTT 59.429 41.667 0.00 0.00 0.00 1.40
174 175 4.120589 GGACGCTCTCTTCGGATTTTATT 58.879 43.478 0.00 0.00 0.00 1.40
175 176 3.492829 GGGACGCTCTCTTCGGATTTTAT 60.493 47.826 0.00 0.00 0.00 1.40
176 177 2.159142 GGGACGCTCTCTTCGGATTTTA 60.159 50.000 0.00 0.00 0.00 1.52
177 178 1.405661 GGGACGCTCTCTTCGGATTTT 60.406 52.381 0.00 0.00 0.00 1.82
178 179 0.175989 GGGACGCTCTCTTCGGATTT 59.824 55.000 0.00 0.00 0.00 2.17
179 180 1.817209 GGGACGCTCTCTTCGGATT 59.183 57.895 0.00 0.00 0.00 3.01
180 181 3.527641 GGGACGCTCTCTTCGGAT 58.472 61.111 0.00 0.00 0.00 4.18
200 201 4.383602 ATTTGCCACGTGTCGCGC 62.384 61.111 15.65 11.15 46.11 6.86
202 203 2.126888 CCATTTGCCACGTGTCGC 60.127 61.111 15.65 12.30 0.00 5.19
203 204 2.126888 GCCATTTGCCACGTGTCG 60.127 61.111 15.65 0.51 0.00 4.35
204 205 1.081242 CAGCCATTTGCCACGTGTC 60.081 57.895 15.65 0.98 42.71 3.67
205 206 1.518056 CTCAGCCATTTGCCACGTGT 61.518 55.000 15.65 0.00 42.71 4.49
206 207 1.210931 CTCAGCCATTTGCCACGTG 59.789 57.895 9.08 9.08 42.71 4.49
207 208 0.957395 CTCTCAGCCATTTGCCACGT 60.957 55.000 0.00 0.00 42.71 4.49
208 209 1.798735 CTCTCAGCCATTTGCCACG 59.201 57.895 0.00 0.00 42.71 4.94
209 210 1.509923 GCTCTCAGCCATTTGCCAC 59.490 57.895 0.00 0.00 42.71 5.01
210 211 2.042259 CGCTCTCAGCCATTTGCCA 61.042 57.895 0.00 0.00 42.71 4.92
211 212 2.796651 CGCTCTCAGCCATTTGCC 59.203 61.111 0.00 0.00 42.71 4.52
212 213 2.101770 GCGCTCTCAGCCATTTGC 59.898 61.111 0.00 0.00 38.18 3.68
213 214 2.402388 CGCGCTCTCAGCCATTTG 59.598 61.111 5.56 0.00 38.18 2.32
214 215 3.503363 GCGCGCTCTCAGCCATTT 61.503 61.111 26.67 0.00 38.18 2.32
219 220 3.503363 ATTTGGCGCGCTCTCAGC 61.503 61.111 32.29 13.79 38.02 4.26
220 221 2.402388 CATTTGGCGCGCTCTCAG 59.598 61.111 32.29 14.73 0.00 3.35
221 222 3.126879 CCATTTGGCGCGCTCTCA 61.127 61.111 32.29 18.24 0.00 3.27
231 232 0.523968 CAACGATCAGCGCCATTTGG 60.524 55.000 2.29 0.00 46.04 3.28
232 233 1.135699 GCAACGATCAGCGCCATTTG 61.136 55.000 2.29 0.00 46.04 2.32
233 234 1.137404 GCAACGATCAGCGCCATTT 59.863 52.632 2.29 0.00 46.04 2.32
234 235 2.793946 GCAACGATCAGCGCCATT 59.206 55.556 2.29 0.00 46.04 3.16
240 241 1.696832 GGAACCTCGCAACGATCAGC 61.697 60.000 0.00 0.00 34.61 4.26
241 242 2.373938 GGAACCTCGCAACGATCAG 58.626 57.895 0.00 0.00 34.61 2.90
242 243 4.590487 GGAACCTCGCAACGATCA 57.410 55.556 0.00 0.00 34.61 2.92
255 256 2.509561 GAGCGCTCCTTCGGGAAC 60.510 66.667 27.22 0.00 44.53 3.62
256 257 4.129737 CGAGCGCTCCTTCGGGAA 62.130 66.667 30.66 0.00 44.53 3.97
258 259 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
259 260 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
260 261 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
261 262 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
262 263 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
263 264 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
264 265 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
265 266 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
266 267 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
267 268 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
268 269 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
269 270 2.269172 GGGAGCAACTAGTTAACGAGC 58.731 52.381 14.82 7.28 0.00 5.03
270 271 2.527100 CGGGAGCAACTAGTTAACGAG 58.473 52.381 13.50 13.50 0.00 4.18
271 272 1.203052 CCGGGAGCAACTAGTTAACGA 59.797 52.381 8.04 0.00 0.00 3.85
272 273 1.067354 ACCGGGAGCAACTAGTTAACG 60.067 52.381 8.04 8.41 0.00 3.18
273 274 2.756840 ACCGGGAGCAACTAGTTAAC 57.243 50.000 8.04 3.72 0.00 2.01
274 275 2.901839 AGAACCGGGAGCAACTAGTTAA 59.098 45.455 8.04 0.00 0.00 2.01
275 276 2.532843 AGAACCGGGAGCAACTAGTTA 58.467 47.619 8.04 0.00 0.00 2.24
276 277 1.349067 AGAACCGGGAGCAACTAGTT 58.651 50.000 6.32 1.12 0.00 2.24
277 278 1.275573 GAAGAACCGGGAGCAACTAGT 59.724 52.381 6.32 0.00 0.00 2.57
278 279 1.405661 GGAAGAACCGGGAGCAACTAG 60.406 57.143 6.32 0.00 0.00 2.57
279 280 0.611714 GGAAGAACCGGGAGCAACTA 59.388 55.000 6.32 0.00 0.00 2.24
280 281 1.128188 AGGAAGAACCGGGAGCAACT 61.128 55.000 6.32 0.00 44.74 3.16
281 282 0.673956 GAGGAAGAACCGGGAGCAAC 60.674 60.000 6.32 0.00 44.74 4.17
282 283 1.677552 GAGGAAGAACCGGGAGCAA 59.322 57.895 6.32 0.00 44.74 3.91
283 284 2.646175 CGAGGAAGAACCGGGAGCA 61.646 63.158 6.32 0.00 44.74 4.26
284 285 2.184579 CGAGGAAGAACCGGGAGC 59.815 66.667 6.32 0.00 44.74 4.70
285 286 2.184579 GCGAGGAAGAACCGGGAG 59.815 66.667 6.32 0.00 44.74 4.30
286 287 3.755628 CGCGAGGAAGAACCGGGA 61.756 66.667 6.32 0.00 44.74 5.14
298 299 0.302890 GCATTGTCTGATTCCGCGAG 59.697 55.000 8.23 0.00 0.00 5.03
299 300 1.420641 CGCATTGTCTGATTCCGCGA 61.421 55.000 8.23 0.00 43.64 5.87
300 301 1.011904 CGCATTGTCTGATTCCGCG 60.012 57.895 0.00 0.00 34.89 6.46
301 302 1.297893 GCGCATTGTCTGATTCCGC 60.298 57.895 0.30 0.00 0.00 5.54
302 303 0.027194 CAGCGCATTGTCTGATTCCG 59.973 55.000 11.47 0.00 32.26 4.30
303 304 1.372582 TCAGCGCATTGTCTGATTCC 58.627 50.000 11.47 0.00 34.69 3.01
304 305 2.853662 GCATCAGCGCATTGTCTGATTC 60.854 50.000 11.47 0.00 44.96 2.52
305 306 1.065102 GCATCAGCGCATTGTCTGATT 59.935 47.619 11.47 0.00 44.96 2.57
307 308 2.092374 GCATCAGCGCATTGTCTGA 58.908 52.632 11.47 3.15 42.72 3.27
308 309 4.684265 GCATCAGCGCATTGTCTG 57.316 55.556 11.47 0.00 0.00 3.51
318 319 1.742880 TTCTGTCCAGCGCATCAGC 60.743 57.895 11.47 0.00 37.42 4.26
319 320 1.690283 CGTTCTGTCCAGCGCATCAG 61.690 60.000 11.47 12.14 0.00 2.90
320 321 1.737735 CGTTCTGTCCAGCGCATCA 60.738 57.895 11.47 1.68 0.00 3.07
321 322 1.416813 CTCGTTCTGTCCAGCGCATC 61.417 60.000 11.47 0.00 0.00 3.91
322 323 1.446792 CTCGTTCTGTCCAGCGCAT 60.447 57.895 11.47 0.00 0.00 4.73
323 324 2.049156 CTCGTTCTGTCCAGCGCA 60.049 61.111 11.47 0.00 0.00 6.09
324 325 1.803519 CTCTCGTTCTGTCCAGCGC 60.804 63.158 0.00 0.00 0.00 5.92
325 326 1.803519 GCTCTCGTTCTGTCCAGCG 60.804 63.158 0.00 0.00 0.00 5.18
326 327 1.446966 GGCTCTCGTTCTGTCCAGC 60.447 63.158 0.00 0.00 0.00 4.85
327 328 1.216710 GGGCTCTCGTTCTGTCCAG 59.783 63.158 0.00 0.00 0.00 3.86
328 329 1.533033 TGGGCTCTCGTTCTGTCCA 60.533 57.895 0.00 0.00 0.00 4.02
329 330 1.216710 CTGGGCTCTCGTTCTGTCC 59.783 63.158 0.00 0.00 0.00 4.02
330 331 1.446966 GCTGGGCTCTCGTTCTGTC 60.447 63.158 0.00 0.00 0.00 3.51
331 332 2.659610 GCTGGGCTCTCGTTCTGT 59.340 61.111 0.00 0.00 0.00 3.41
332 333 2.125350 GGCTGGGCTCTCGTTCTG 60.125 66.667 0.00 0.00 0.00 3.02
333 334 3.394836 GGGCTGGGCTCTCGTTCT 61.395 66.667 0.00 0.00 0.00 3.01
334 335 3.254024 TTGGGCTGGGCTCTCGTTC 62.254 63.158 0.00 0.00 0.00 3.95
335 336 3.249189 TTGGGCTGGGCTCTCGTT 61.249 61.111 0.00 0.00 0.00 3.85
336 337 4.021925 GTTGGGCTGGGCTCTCGT 62.022 66.667 0.00 0.00 0.00 4.18
337 338 2.303549 CTAGTTGGGCTGGGCTCTCG 62.304 65.000 0.00 0.00 0.00 4.04
338 339 1.524482 CTAGTTGGGCTGGGCTCTC 59.476 63.158 0.00 0.00 0.00 3.20
339 340 2.674220 GCTAGTTGGGCTGGGCTCT 61.674 63.158 0.00 0.00 0.00 4.09
340 341 2.124529 GCTAGTTGGGCTGGGCTC 60.125 66.667 0.00 0.00 0.00 4.70
341 342 1.793820 AAAGCTAGTTGGGCTGGGCT 61.794 55.000 0.00 0.00 40.19 5.19
342 343 0.900182 AAAAGCTAGTTGGGCTGGGC 60.900 55.000 0.00 0.00 40.19 5.36
343 344 0.890683 CAAAAGCTAGTTGGGCTGGG 59.109 55.000 0.00 0.00 40.19 4.45
344 345 0.890683 CCAAAAGCTAGTTGGGCTGG 59.109 55.000 17.66 0.00 41.64 4.85
345 346 1.909700 TCCAAAAGCTAGTTGGGCTG 58.090 50.000 22.65 4.25 44.82 4.85
346 347 2.225117 ACATCCAAAAGCTAGTTGGGCT 60.225 45.455 22.65 11.95 44.82 5.19
347 348 2.171003 ACATCCAAAAGCTAGTTGGGC 58.829 47.619 22.65 0.00 44.82 5.36
348 349 4.843728 TCTACATCCAAAAGCTAGTTGGG 58.156 43.478 22.65 13.53 44.82 4.12
349 350 6.708054 CCTATCTACATCCAAAAGCTAGTTGG 59.292 42.308 18.87 18.87 45.89 3.77
350 351 6.203723 GCCTATCTACATCCAAAAGCTAGTTG 59.796 42.308 3.56 3.56 0.00 3.16
351 352 6.292150 GCCTATCTACATCCAAAAGCTAGTT 58.708 40.000 0.00 0.00 0.00 2.24
352 353 5.221742 GGCCTATCTACATCCAAAAGCTAGT 60.222 44.000 0.00 0.00 0.00 2.57
353 354 5.241662 GGCCTATCTACATCCAAAAGCTAG 58.758 45.833 0.00 0.00 0.00 3.42
354 355 4.041691 GGGCCTATCTACATCCAAAAGCTA 59.958 45.833 0.84 0.00 0.00 3.32
355 356 3.181439 GGGCCTATCTACATCCAAAAGCT 60.181 47.826 0.84 0.00 0.00 3.74
356 357 3.149981 GGGCCTATCTACATCCAAAAGC 58.850 50.000 0.84 0.00 0.00 3.51
357 358 4.437682 TGGGCCTATCTACATCCAAAAG 57.562 45.455 4.53 0.00 0.00 2.27
358 359 4.532834 GTTGGGCCTATCTACATCCAAAA 58.467 43.478 4.53 0.00 36.25 2.44
359 360 3.117663 GGTTGGGCCTATCTACATCCAAA 60.118 47.826 4.53 0.00 36.25 3.28
360 361 2.441750 GGTTGGGCCTATCTACATCCAA 59.558 50.000 4.53 0.00 32.60 3.53
361 362 2.054799 GGTTGGGCCTATCTACATCCA 58.945 52.381 4.53 0.00 0.00 3.41
362 363 1.351350 GGGTTGGGCCTATCTACATCC 59.649 57.143 4.53 0.00 37.43 3.51
363 364 2.054799 TGGGTTGGGCCTATCTACATC 58.945 52.381 4.53 0.00 37.43 3.06
364 365 2.174854 GTTGGGTTGGGCCTATCTACAT 59.825 50.000 4.53 0.00 37.43 2.29
365 366 1.562475 GTTGGGTTGGGCCTATCTACA 59.438 52.381 4.53 0.00 37.43 2.74
366 367 1.844497 AGTTGGGTTGGGCCTATCTAC 59.156 52.381 4.53 0.44 37.43 2.59
367 368 2.280308 AGTTGGGTTGGGCCTATCTA 57.720 50.000 4.53 0.00 37.43 1.98
368 369 1.844497 GTAGTTGGGTTGGGCCTATCT 59.156 52.381 4.53 0.00 37.43 1.98
369 370 1.562475 TGTAGTTGGGTTGGGCCTATC 59.438 52.381 4.53 0.00 37.43 2.08
370 371 1.676248 TGTAGTTGGGTTGGGCCTAT 58.324 50.000 4.53 0.00 37.43 2.57
371 372 1.676248 ATGTAGTTGGGTTGGGCCTA 58.324 50.000 4.53 0.00 37.43 3.93
372 373 0.783850 AATGTAGTTGGGTTGGGCCT 59.216 50.000 4.53 0.00 37.43 5.19
373 374 1.639722 AAATGTAGTTGGGTTGGGCC 58.360 50.000 0.00 0.00 0.00 5.80
374 375 2.367241 ACAAAATGTAGTTGGGTTGGGC 59.633 45.455 0.00 0.00 0.00 5.36
375 376 4.585162 TGTACAAAATGTAGTTGGGTTGGG 59.415 41.667 0.00 0.00 32.84 4.12
376 377 5.776173 TGTACAAAATGTAGTTGGGTTGG 57.224 39.130 0.00 0.00 32.84 3.77
377 378 7.657336 AGAATGTACAAAATGTAGTTGGGTTG 58.343 34.615 0.00 0.00 32.84 3.77
378 379 7.039993 GGAGAATGTACAAAATGTAGTTGGGTT 60.040 37.037 0.00 0.00 32.84 4.11
379 380 6.433093 GGAGAATGTACAAAATGTAGTTGGGT 59.567 38.462 0.00 0.00 32.84 4.51
380 381 6.432783 TGGAGAATGTACAAAATGTAGTTGGG 59.567 38.462 0.00 0.00 32.84 4.12
381 382 7.362056 CCTGGAGAATGTACAAAATGTAGTTGG 60.362 40.741 0.00 0.00 32.84 3.77
382 383 7.530010 CCTGGAGAATGTACAAAATGTAGTTG 58.470 38.462 0.00 0.00 32.84 3.16
383 384 6.151144 GCCTGGAGAATGTACAAAATGTAGTT 59.849 38.462 0.00 0.00 32.84 2.24
384 385 5.648092 GCCTGGAGAATGTACAAAATGTAGT 59.352 40.000 0.00 0.00 32.84 2.73
385 386 5.066505 GGCCTGGAGAATGTACAAAATGTAG 59.933 44.000 0.00 0.00 32.84 2.74
386 387 4.947388 GGCCTGGAGAATGTACAAAATGTA 59.053 41.667 0.00 0.00 0.00 2.29
387 388 3.763897 GGCCTGGAGAATGTACAAAATGT 59.236 43.478 0.00 0.00 0.00 2.71
388 389 3.131046 GGGCCTGGAGAATGTACAAAATG 59.869 47.826 0.84 0.00 0.00 2.32
389 390 3.245586 TGGGCCTGGAGAATGTACAAAAT 60.246 43.478 4.53 0.00 0.00 1.82
390 391 2.109128 TGGGCCTGGAGAATGTACAAAA 59.891 45.455 4.53 0.00 0.00 2.44
391 392 1.707989 TGGGCCTGGAGAATGTACAAA 59.292 47.619 4.53 0.00 0.00 2.83
392 393 1.367346 TGGGCCTGGAGAATGTACAA 58.633 50.000 4.53 0.00 0.00 2.41
393 394 1.004277 GTTGGGCCTGGAGAATGTACA 59.996 52.381 4.53 0.00 0.00 2.90
394 395 1.004277 TGTTGGGCCTGGAGAATGTAC 59.996 52.381 4.53 0.00 0.00 2.90
395 396 1.004277 GTGTTGGGCCTGGAGAATGTA 59.996 52.381 4.53 0.00 0.00 2.29
396 397 0.251341 GTGTTGGGCCTGGAGAATGT 60.251 55.000 4.53 0.00 0.00 2.71
397 398 0.251297 TGTGTTGGGCCTGGAGAATG 60.251 55.000 4.53 0.00 0.00 2.67
398 399 0.482446 TTGTGTTGGGCCTGGAGAAT 59.518 50.000 4.53 0.00 0.00 2.40
399 400 0.467290 GTTGTGTTGGGCCTGGAGAA 60.467 55.000 4.53 0.00 0.00 2.87
400 401 1.150536 GTTGTGTTGGGCCTGGAGA 59.849 57.895 4.53 0.00 0.00 3.71
401 402 0.400213 TAGTTGTGTTGGGCCTGGAG 59.600 55.000 4.53 0.00 0.00 3.86
402 403 0.109723 GTAGTTGTGTTGGGCCTGGA 59.890 55.000 4.53 0.00 0.00 3.86
403 404 0.110486 AGTAGTTGTGTTGGGCCTGG 59.890 55.000 4.53 0.00 0.00 4.45
404 405 1.523758 GAGTAGTTGTGTTGGGCCTG 58.476 55.000 4.53 0.00 0.00 4.85
405 406 0.400594 GGAGTAGTTGTGTTGGGCCT 59.599 55.000 4.53 0.00 0.00 5.19
406 407 0.608308 GGGAGTAGTTGTGTTGGGCC 60.608 60.000 0.00 0.00 0.00 5.80
407 408 0.400594 AGGGAGTAGTTGTGTTGGGC 59.599 55.000 0.00 0.00 0.00 5.36
408 409 1.003233 GGAGGGAGTAGTTGTGTTGGG 59.997 57.143 0.00 0.00 0.00 4.12
409 410 1.337823 CGGAGGGAGTAGTTGTGTTGG 60.338 57.143 0.00 0.00 0.00 3.77
410 411 1.343465 ACGGAGGGAGTAGTTGTGTTG 59.657 52.381 0.00 0.00 0.00 3.33
411 412 1.713297 ACGGAGGGAGTAGTTGTGTT 58.287 50.000 0.00 0.00 0.00 3.32
412 413 1.617357 GAACGGAGGGAGTAGTTGTGT 59.383 52.381 0.00 0.00 0.00 3.72
413 414 1.067071 GGAACGGAGGGAGTAGTTGTG 60.067 57.143 0.00 0.00 0.00 3.33
414 415 1.264295 GGAACGGAGGGAGTAGTTGT 58.736 55.000 0.00 0.00 0.00 3.32
415 416 1.263356 TGGAACGGAGGGAGTAGTTG 58.737 55.000 0.00 0.00 0.00 3.16
416 417 2.019807 TTGGAACGGAGGGAGTAGTT 57.980 50.000 0.00 0.00 0.00 2.24
417 418 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
418 419 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
419 420 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
420 421 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
421 422 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
422 423 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
423 424 4.130118 CTCATCTATTTTGGAACGGAGGG 58.870 47.826 0.00 0.00 0.00 4.30
424 425 4.770795 ACTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
425 426 5.419542 TGACTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
426 427 5.414789 TGACTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
427 428 5.643777 AGTTGACTCATCTATTTTGGAACGG 59.356 40.000 0.00 0.00 0.00 4.44
428 429 6.727824 AGTTGACTCATCTATTTTGGAACG 57.272 37.500 0.00 0.00 0.00 3.95
429 430 8.352942 ACAAAGTTGACTCATCTATTTTGGAAC 58.647 33.333 0.00 0.00 39.71 3.62
430 431 8.463930 ACAAAGTTGACTCATCTATTTTGGAA 57.536 30.769 0.00 0.00 39.71 3.53
431 432 8.999431 GTACAAAGTTGACTCATCTATTTTGGA 58.001 33.333 0.00 1.44 39.71 3.53
432 433 9.003658 AGTACAAAGTTGACTCATCTATTTTGG 57.996 33.333 0.00 0.00 39.71 3.28
470 471 8.028938 CCGTTCCAAAATAGATGACTCAAATTT 58.971 33.333 0.00 0.00 0.00 1.82
471 472 7.393234 TCCGTTCCAAAATAGATGACTCAAATT 59.607 33.333 0.00 0.00 0.00 1.82
472 473 6.884295 TCCGTTCCAAAATAGATGACTCAAAT 59.116 34.615 0.00 0.00 0.00 2.32
473 474 6.234920 TCCGTTCCAAAATAGATGACTCAAA 58.765 36.000 0.00 0.00 0.00 2.69
474 475 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
475 476 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
476 477 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
477 478 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
478 479 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
479 480 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
480 481 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
481 482 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
482 483 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
483 484 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
484 485 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
485 486 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
486 487 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
487 488 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
488 489 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
489 490 0.325296 ATGCTACTCCCTCCGTTCCA 60.325 55.000 0.00 0.00 0.00 3.53
490 491 0.831307 AATGCTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
491 492 2.693267 AAATGCTACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
492 493 3.434940 AAAAATGCTACTCCCTCCGTT 57.565 42.857 0.00 0.00 0.00 4.44
517 518 6.996180 ATATTGCTAGTTGAGTTAGGCCTA 57.004 37.500 8.91 8.91 0.00 3.93
523 524 5.605069 TGGGCCTATATTGCTAGTTGAGTTA 59.395 40.000 4.53 0.00 0.00 2.24
527 528 4.445735 GGTTGGGCCTATATTGCTAGTTGA 60.446 45.833 4.53 0.00 0.00 3.18
575 584 1.340114 GCCTAGGGGTGAGGAAAGTTG 60.340 57.143 11.72 0.00 35.99 3.16
624 636 3.564027 CCGCCGCCGATTGACTTC 61.564 66.667 0.00 0.00 36.29 3.01
713 725 1.821258 CTAGGAAGGTGGGGCGTAC 59.179 63.158 0.00 0.00 0.00 3.67
882 894 2.212652 GCAAAACCCCAAAGAAGCAAG 58.787 47.619 0.00 0.00 0.00 4.01
955 972 1.347817 GAAGCTTGCCTGACGAGACG 61.348 60.000 2.10 0.00 30.27 4.18
974 991 4.162690 CGGCGGAAAGAGGAGGGG 62.163 72.222 0.00 0.00 0.00 4.79
1178 1225 0.033306 GAGGGGGAGGAGAGTTACGT 60.033 60.000 0.00 0.00 0.00 3.57
1190 1237 3.142028 ACAAAAGGAAAATGAGAGGGGGA 59.858 43.478 0.00 0.00 0.00 4.81
1223 1277 3.181496 GGCACAAAGTAGCTAAGCAATCC 60.181 47.826 0.00 0.00 0.00 3.01
1237 1291 2.551459 CCAAAGAGAGACAGGCACAAAG 59.449 50.000 0.00 0.00 0.00 2.77
1276 1336 1.739049 CTCTCCTCCTCATGGTCGC 59.261 63.158 0.00 0.00 34.23 5.19
1323 1383 2.837291 CTCCTCGAGCTCCCCCAG 60.837 72.222 6.99 0.00 0.00 4.45
1444 1519 7.819900 GGAACTAGAAGAGAAGAAATGCAAGTA 59.180 37.037 0.00 0.00 0.00 2.24
1450 1525 5.171476 TGCGGAACTAGAAGAGAAGAAATG 58.829 41.667 0.00 0.00 0.00 2.32
1470 1545 5.401972 TGAAAGAAAAATGTGTGCTTATGCG 59.598 36.000 0.00 0.00 43.34 4.73
1482 1557 2.649516 TCTGCGCGTGAAAGAAAAATG 58.350 42.857 8.43 0.00 0.00 2.32
1574 1652 9.952030 TTAAGTACAATGAATGTGAAGGATACA 57.048 29.630 0.00 0.00 43.77 2.29
1875 2025 3.639094 ACGTATGCTTGCTCTATCTCCTT 59.361 43.478 0.00 0.00 0.00 3.36
1895 2045 1.986378 GACGAGTCCAACAGATCAACG 59.014 52.381 0.00 0.00 0.00 4.10
1913 2063 2.062519 GAGCCAAGAGTCTGTTTCGAC 58.937 52.381 0.00 0.00 0.00 4.20
2161 2437 2.162408 GCAAAGCATCTGTGGTAAGTCC 59.838 50.000 0.00 0.00 34.36 3.85
2168 2444 3.444742 TGAATTAGGCAAAGCATCTGTGG 59.555 43.478 0.00 0.00 0.00 4.17
2169 2445 4.707030 TGAATTAGGCAAAGCATCTGTG 57.293 40.909 0.00 0.00 0.00 3.66
2531 2824 7.823745 AACAATGTCTGTAAAGATGAAACCT 57.176 32.000 0.00 0.00 37.23 3.50
2660 3038 3.531538 TGCTAAGTTAAGGATTCGCCAG 58.468 45.455 0.00 0.00 40.02 4.85
2675 3053 3.814842 TCATTTATCCCGTGCATGCTAAG 59.185 43.478 20.33 9.79 0.00 2.18
2813 3191 4.158394 ACAGCCCAAGCAAAATACATACAG 59.842 41.667 0.00 0.00 43.56 2.74
2869 3247 5.950758 TGATACCAAACGCTGTTTTATGT 57.049 34.783 4.31 5.46 0.00 2.29
3105 3486 9.778741 TCACTTATTTTCTGTTCTCATACAAGT 57.221 29.630 0.00 0.00 0.00 3.16
3387 3769 9.091784 CGAAATCTGAATAGAACAAATGAGAGA 57.908 33.333 0.00 0.00 36.32 3.10
3388 3770 8.877779 ACGAAATCTGAATAGAACAAATGAGAG 58.122 33.333 0.00 0.00 36.32 3.20
3428 3817 6.096001 GCCTCAATGGAAGAAATGAACTACAT 59.904 38.462 0.00 0.00 38.37 2.29
3814 4251 5.053811 GCCTACCTTATCTTTCTGCTCTTC 58.946 45.833 0.00 0.00 0.00 2.87
4045 4492 8.804912 AGCTAAATCTTCTTCTGATGTCAAAT 57.195 30.769 0.00 0.00 0.00 2.32
4086 4537 5.914033 TCTTATATTGTGGAACGGAGGAAG 58.086 41.667 0.00 0.00 42.39 3.46
4087 4538 5.943349 TCTTATATTGTGGAACGGAGGAA 57.057 39.130 0.00 0.00 42.39 3.36
4088 4539 5.600898 TGATCTTATATTGTGGAACGGAGGA 59.399 40.000 0.00 0.00 42.39 3.71
4089 4540 5.853936 TGATCTTATATTGTGGAACGGAGG 58.146 41.667 0.00 0.00 42.39 4.30
4090 4541 7.969536 AATGATCTTATATTGTGGAACGGAG 57.030 36.000 0.00 0.00 42.39 4.63
4091 4542 7.990314 TGAAATGATCTTATATTGTGGAACGGA 59.010 33.333 0.00 0.00 42.39 4.69
4092 4543 8.153479 TGAAATGATCTTATATTGTGGAACGG 57.847 34.615 0.00 0.00 42.39 4.44
4093 4544 9.438291 GTTGAAATGATCTTATATTGTGGAACG 57.562 33.333 0.00 0.00 42.39 3.95
4094 4545 9.736023 GGTTGAAATGATCTTATATTGTGGAAC 57.264 33.333 0.00 0.00 37.35 3.62
4095 4546 9.699410 AGGTTGAAATGATCTTATATTGTGGAA 57.301 29.630 0.00 0.00 0.00 3.53
4105 4556 9.905713 AAGCTAACATAGGTTGAAATGATCTTA 57.094 29.630 2.37 0.00 44.11 2.10
4106 4557 8.814038 AAGCTAACATAGGTTGAAATGATCTT 57.186 30.769 2.37 0.00 44.11 2.40
4117 4568 6.628919 ACGTTTTTCAAGCTAACATAGGTT 57.371 33.333 0.00 0.00 46.49 3.50
4118 4569 6.485648 AGAACGTTTTTCAAGCTAACATAGGT 59.514 34.615 0.46 0.00 38.32 3.08
4119 4570 6.899114 AGAACGTTTTTCAAGCTAACATAGG 58.101 36.000 0.46 0.00 0.00 2.57
4126 4577 9.820229 CACAATATAAGAACGTTTTTCAAGCTA 57.180 29.630 7.42 0.00 0.00 3.32
4127 4578 7.807907 CCACAATATAAGAACGTTTTTCAAGCT 59.192 33.333 7.42 0.00 0.00 3.74
4128 4579 7.061789 CCCACAATATAAGAACGTTTTTCAAGC 59.938 37.037 7.42 0.00 0.00 4.01
4129 4580 8.293867 TCCCACAATATAAGAACGTTTTTCAAG 58.706 33.333 7.42 0.00 0.00 3.02
4130 4581 8.077386 GTCCCACAATATAAGAACGTTTTTCAA 58.923 33.333 7.42 0.00 0.00 2.69
4131 4582 7.571613 CGTCCCACAATATAAGAACGTTTTTCA 60.572 37.037 7.42 0.00 0.00 2.69
4132 4583 6.739550 CGTCCCACAATATAAGAACGTTTTTC 59.260 38.462 7.42 0.00 0.00 2.29
4133 4584 6.348704 CCGTCCCACAATATAAGAACGTTTTT 60.349 38.462 9.22 9.22 0.00 1.94
4134 4585 5.122711 CCGTCCCACAATATAAGAACGTTTT 59.877 40.000 0.46 0.00 0.00 2.43
4135 4586 4.632688 CCGTCCCACAATATAAGAACGTTT 59.367 41.667 0.46 0.00 0.00 3.60
4136 4587 4.081531 TCCGTCCCACAATATAAGAACGTT 60.082 41.667 0.00 0.00 0.00 3.99
4137 4588 3.448301 TCCGTCCCACAATATAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
4138 4589 4.049186 CTCCGTCCCACAATATAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
4139 4590 4.377897 CCTCCGTCCCACAATATAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
4140 4591 3.389983 CCCTCCGTCCCACAATATAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
4141 4592 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4142 4593 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
4143 4594 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
4144 4595 2.178325 TCTCCCTCCGTCCCACAATATA 59.822 50.000 0.00 0.00 0.00 0.86
4145 4596 1.062428 TCTCCCTCCGTCCCACAATAT 60.062 52.381 0.00 0.00 0.00 1.28
4146 4597 0.337082 TCTCCCTCCGTCCCACAATA 59.663 55.000 0.00 0.00 0.00 1.90
4147 4598 0.546747 TTCTCCCTCCGTCCCACAAT 60.547 55.000 0.00 0.00 0.00 2.71
4148 4599 1.152204 TTCTCCCTCCGTCCCACAA 60.152 57.895 0.00 0.00 0.00 3.33
4149 4600 1.609501 CTTCTCCCTCCGTCCCACA 60.610 63.158 0.00 0.00 0.00 4.17
4150 4601 1.192803 AACTTCTCCCTCCGTCCCAC 61.193 60.000 0.00 0.00 0.00 4.61
4151 4602 0.473117 AAACTTCTCCCTCCGTCCCA 60.473 55.000 0.00 0.00 0.00 4.37
4152 4603 0.691332 AAAACTTCTCCCTCCGTCCC 59.309 55.000 0.00 0.00 0.00 4.46
4153 4604 3.690475 TTAAAACTTCTCCCTCCGTCC 57.310 47.619 0.00 0.00 0.00 4.79
4154 4605 4.451435 CAGTTTAAAACTTCTCCCTCCGTC 59.549 45.833 0.00 0.00 40.46 4.79
4155 4606 4.141551 ACAGTTTAAAACTTCTCCCTCCGT 60.142 41.667 0.00 0.00 40.46 4.69
4156 4607 4.386711 ACAGTTTAAAACTTCTCCCTCCG 58.613 43.478 0.00 0.00 40.46 4.63
4157 4608 7.997773 ATTACAGTTTAAAACTTCTCCCTCC 57.002 36.000 0.00 0.00 40.46 4.30
4165 4616 9.855021 GCCATCACATATTACAGTTTAAAACTT 57.145 29.630 0.00 0.00 40.46 2.66
4166 4617 8.466798 GGCCATCACATATTACAGTTTAAAACT 58.533 33.333 0.00 0.00 44.06 2.66
4231 4682 0.323360 ATGCGCTTTCTAGGCCCAAA 60.323 50.000 9.73 0.00 0.00 3.28
4242 4693 7.068692 ACTACGTAAAATAGAAATGCGCTTT 57.931 32.000 9.73 5.65 0.00 3.51
4255 4706 6.932400 TCCATCACACAGAAACTACGTAAAAT 59.068 34.615 0.00 0.00 0.00 1.82
4261 4712 3.618594 CCATCCATCACACAGAAACTACG 59.381 47.826 0.00 0.00 0.00 3.51
4298 4751 7.833682 CAGTAGAGATCTATATCACTCCCATGT 59.166 40.741 0.00 0.00 35.12 3.21
4318 5089 3.196469 CCATCTCCAGTTTCAGCAGTAGA 59.804 47.826 0.00 0.00 0.00 2.59
4321 5092 1.004044 CCCATCTCCAGTTTCAGCAGT 59.996 52.381 0.00 0.00 0.00 4.40
4325 5096 0.329261 TGGCCCATCTCCAGTTTCAG 59.671 55.000 0.00 0.00 0.00 3.02
4392 5163 2.292845 GCTGAAGAAAGATATGGCAGCC 59.707 50.000 3.66 3.66 40.85 4.85
4485 5256 7.092716 GTCAATCCATGCATAAAAGACTGTTT 58.907 34.615 0.00 0.00 0.00 2.83
4518 5289 9.393512 CATTCAAGATTACTTCATCTCTTCCTT 57.606 33.333 0.00 0.00 31.87 3.36
4568 5339 2.684943 TCTGTGACAAAGACTACCCCA 58.315 47.619 0.00 0.00 0.00 4.96
4578 5349 2.355756 GCTGAAGCTGTTCTGTGACAAA 59.644 45.455 0.00 0.00 38.21 2.83
4604 5375 3.168292 ACTGTCCATGAGAGTCACATCA 58.832 45.455 0.00 0.00 30.11 3.07
4613 5384 1.000843 CACAACCGACTGTCCATGAGA 59.999 52.381 1.55 0.00 0.00 3.27
4658 5435 7.373493 ACTCTTCTTTCAGTTATTGCCATTTG 58.627 34.615 0.00 0.00 0.00 2.32
4687 5464 7.174253 TGTTCTATTTGGTGGAATTGTAGTCAC 59.826 37.037 0.00 0.00 29.51 3.67
4693 5470 5.640147 TCCTGTTCTATTTGGTGGAATTGT 58.360 37.500 0.00 0.00 29.51 2.71
4730 5569 2.103094 TGAGGTGACCAAGTTCAGACAG 59.897 50.000 3.63 0.00 0.00 3.51
4731 5570 2.115427 TGAGGTGACCAAGTTCAGACA 58.885 47.619 3.63 0.00 0.00 3.41
4734 5573 1.876156 GCTTGAGGTGACCAAGTTCAG 59.124 52.381 3.63 0.00 42.11 3.02
4737 5576 0.550914 TGGCTTGAGGTGACCAAGTT 59.449 50.000 3.63 0.00 42.11 2.66
4743 5582 0.393537 CCCATCTGGCTTGAGGTGAC 60.394 60.000 0.00 0.00 0.00 3.67
4814 5653 1.141234 CGGGCGAGAAGGTTAGTCC 59.859 63.158 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.