Multiple sequence alignment - TraesCS5A01G130700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G130700 chr5A 100.000 9499 0 0 1 9499 294240060 294249558 0.000000e+00 17542.0
1 TraesCS5A01G130700 chr5A 98.491 795 9 3 1 792 17471161 17471955 0.000000e+00 1399.0
2 TraesCS5A01G130700 chr5A 97.368 38 1 0 5074 5111 509123613 509123576 2.210000e-06 65.8
3 TraesCS5A01G130700 chr5B 94.125 4579 154 40 4957 9496 243131720 243136222 0.000000e+00 6859.0
4 TraesCS5A01G130700 chr5B 96.042 4068 123 14 804 4856 243127675 243131719 0.000000e+00 6586.0
5 TraesCS5A01G130700 chr5B 92.920 113 8 0 4847 4959 603815755 603815867 2.120000e-36 165.0
6 TraesCS5A01G130700 chr5B 75.847 236 36 12 4533 4764 290306909 290307127 6.070000e-17 100.0
7 TraesCS5A01G130700 chr5D 94.757 3090 102 27 6427 9496 220191329 220194378 0.000000e+00 4754.0
8 TraesCS5A01G130700 chr5D 96.705 2701 67 12 860 3554 220186329 220189013 0.000000e+00 4475.0
9 TraesCS5A01G130700 chr5D 92.664 1295 65 10 4823 6088 220189543 220190836 0.000000e+00 1838.0
10 TraesCS5A01G130700 chr5D 97.378 534 14 0 3612 4145 220189013 220189546 0.000000e+00 909.0
11 TraesCS5A01G130700 chr5D 93.985 133 4 2 6120 6251 220190836 220190965 2.090000e-46 198.0
12 TraesCS5A01G130700 chr5D 91.667 84 6 1 793 875 220186233 220186316 2.170000e-21 115.0
13 TraesCS5A01G130700 chr5D 94.737 57 1 2 4148 4203 544474330 544474275 4.730000e-13 87.9
14 TraesCS5A01G130700 chr2B 98.862 791 8 1 1 790 741916264 741917054 0.000000e+00 1410.0
15 TraesCS5A01G130700 chr2B 98.483 791 11 1 1 790 99571119 99571909 0.000000e+00 1393.0
16 TraesCS5A01G130700 chr2B 97.118 798 20 3 1 797 772255523 772256318 0.000000e+00 1343.0
17 TraesCS5A01G130700 chr2B 93.750 112 6 1 4850 4961 770902448 770902338 5.900000e-37 167.0
18 TraesCS5A01G130700 chr2B 95.238 105 4 1 4854 4958 734296007 734295904 2.120000e-36 165.0
19 TraesCS5A01G130700 chr4B 98.248 799 14 0 1 799 14706085 14705287 0.000000e+00 1399.0
20 TraesCS5A01G130700 chr4B 98.487 793 12 0 1 793 149726518 149725726 0.000000e+00 1399.0
21 TraesCS5A01G130700 chr4B 94.444 54 1 2 4149 4201 626962905 626962853 2.200000e-11 82.4
22 TraesCS5A01G130700 chr4B 85.938 64 5 2 9246 9309 174923287 174923228 2.210000e-06 65.8
23 TraesCS5A01G130700 chr2A 98.239 795 13 1 1 795 687266527 687265734 0.000000e+00 1389.0
24 TraesCS5A01G130700 chr2A 94.737 38 2 0 4165 4202 718158833 718158870 1.030000e-04 60.2
25 TraesCS5A01G130700 chr1A 98.104 791 14 1 1 790 255477942 255478732 0.000000e+00 1376.0
26 TraesCS5A01G130700 chr3B 97.208 788 20 2 4 790 462493592 462492806 0.000000e+00 1332.0
27 TraesCS5A01G130700 chr3B 92.174 115 8 1 4851 4965 728614836 728614949 2.750000e-35 161.0
28 TraesCS5A01G130700 chr7A 90.173 346 30 2 4479 4821 691049106 691049450 1.880000e-121 448.0
29 TraesCS5A01G130700 chr7A 84.946 279 27 9 4506 4772 406033343 406033618 1.570000e-67 268.0
30 TraesCS5A01G130700 chr7B 88.630 343 32 1 4479 4821 726964776 726965111 2.470000e-110 411.0
31 TraesCS5A01G130700 chr7B 92.213 244 12 3 5929 6166 445663613 445663371 1.180000e-88 339.0
32 TraesCS5A01G130700 chr7B 83.509 285 28 10 4552 4824 364632798 364632521 2.050000e-61 248.0
33 TraesCS5A01G130700 chr7B 95.370 108 5 0 4851 4958 570465257 570465364 1.270000e-38 172.0
34 TraesCS5A01G130700 chr7B 93.860 114 6 1 4348 4461 726964676 726964788 4.560000e-38 171.0
35 TraesCS5A01G130700 chr6A 92.887 239 11 3 5929 6162 381088942 381088705 9.130000e-90 342.0
36 TraesCS5A01G130700 chr6A 100.000 32 0 0 3414 3445 287482849 287482818 1.030000e-04 60.2
37 TraesCS5A01G130700 chr4D 92.887 239 11 2 5929 6162 220345206 220344969 9.130000e-90 342.0
38 TraesCS5A01G130700 chr4D 92.213 244 11 4 5930 6167 325107871 325108112 1.180000e-88 339.0
39 TraesCS5A01G130700 chr4D 93.043 115 7 1 4846 4960 441486819 441486706 5.900000e-37 167.0
40 TraesCS5A01G130700 chr4D 89.888 89 5 1 3280 3368 123302190 123302274 2.800000e-20 111.0
41 TraesCS5A01G130700 chr4D 89.888 89 5 1 3280 3368 123718807 123718891 2.800000e-20 111.0
42 TraesCS5A01G130700 chr4D 89.888 89 5 1 3280 3368 241164992 241165076 2.800000e-20 111.0
43 TraesCS5A01G130700 chr4D 85.938 64 5 2 9246 9309 114197316 114197257 2.210000e-06 65.8
44 TraesCS5A01G130700 chr6D 92.213 244 12 3 5929 6166 115323819 115323577 1.180000e-88 339.0
45 TraesCS5A01G130700 chr6D 92.857 112 7 1 4850 4961 456557465 456557355 2.750000e-35 161.0
46 TraesCS5A01G130700 chr6D 91.379 116 9 1 4848 4963 130301066 130300952 3.550000e-34 158.0
47 TraesCS5A01G130700 chr6D 89.888 89 5 1 3280 3368 425588058 425587974 2.800000e-20 111.0
48 TraesCS5A01G130700 chr4A 92.213 244 12 3 5929 6166 146552254 146552012 1.180000e-88 339.0
49 TraesCS5A01G130700 chr4A 85.938 64 5 2 9246 9309 462824709 462824768 2.210000e-06 65.8
50 TraesCS5A01G130700 chr7D 91.837 245 13 3 5928 6166 428025051 428024808 1.530000e-87 335.0
51 TraesCS5A01G130700 chr7D 91.964 224 16 2 4597 4818 598593320 598593543 7.160000e-81 313.0
52 TraesCS5A01G130700 chr7D 82.051 390 42 13 4212 4600 598592529 598592891 3.330000e-79 307.0
53 TraesCS5A01G130700 chr2D 85.535 318 28 9 4149 4451 47656178 47656492 5.540000e-82 316.0
54 TraesCS5A01G130700 chr6B 91.011 89 4 1 3280 3368 613189163 613189079 6.030000e-22 117.0
55 TraesCS5A01G130700 chr3D 78.947 190 22 10 4578 4764 558091395 558091221 7.800000e-21 113.0
56 TraesCS5A01G130700 chrUn 89.888 89 5 1 3280 3368 391007177 391007261 2.800000e-20 111.0
57 TraesCS5A01G130700 chrUn 79.532 171 17 11 4597 4764 464109944 464109789 1.300000e-18 106.0
58 TraesCS5A01G130700 chr1D 89.888 89 5 1 3280 3368 141310836 141310752 2.800000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G130700 chr5A 294240060 294249558 9498 False 17542.000000 17542 100.0000 1 9499 1 chr5A.!!$F2 9498
1 TraesCS5A01G130700 chr5A 17471161 17471955 794 False 1399.000000 1399 98.4910 1 792 1 chr5A.!!$F1 791
2 TraesCS5A01G130700 chr5B 243127675 243136222 8547 False 6722.500000 6859 95.0835 804 9496 2 chr5B.!!$F3 8692
3 TraesCS5A01G130700 chr5D 220186233 220194378 8145 False 2048.166667 4754 94.5260 793 9496 6 chr5D.!!$F1 8703
4 TraesCS5A01G130700 chr2B 741916264 741917054 790 False 1410.000000 1410 98.8620 1 790 1 chr2B.!!$F2 789
5 TraesCS5A01G130700 chr2B 99571119 99571909 790 False 1393.000000 1393 98.4830 1 790 1 chr2B.!!$F1 789
6 TraesCS5A01G130700 chr2B 772255523 772256318 795 False 1343.000000 1343 97.1180 1 797 1 chr2B.!!$F3 796
7 TraesCS5A01G130700 chr4B 14705287 14706085 798 True 1399.000000 1399 98.2480 1 799 1 chr4B.!!$R1 798
8 TraesCS5A01G130700 chr4B 149725726 149726518 792 True 1399.000000 1399 98.4870 1 793 1 chr4B.!!$R2 792
9 TraesCS5A01G130700 chr2A 687265734 687266527 793 True 1389.000000 1389 98.2390 1 795 1 chr2A.!!$R1 794
10 TraesCS5A01G130700 chr1A 255477942 255478732 790 False 1376.000000 1376 98.1040 1 790 1 chr1A.!!$F1 789
11 TraesCS5A01G130700 chr3B 462492806 462493592 786 True 1332.000000 1332 97.2080 4 790 1 chr3B.!!$R1 786
12 TraesCS5A01G130700 chr7D 598592529 598593543 1014 False 310.000000 313 87.0075 4212 4818 2 chr7D.!!$F1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 250 0.346574 TGGATCCATGGAGAAGGGGA 59.653 55.000 21.33 0.00 0.00 4.81 F
896 934 0.817654 CAGTGCACTCTGGTCGGATA 59.182 55.000 18.64 0.00 0.00 2.59 F
2038 2077 1.001974 TCCGCCCATCCATTCGATAAG 59.998 52.381 0.00 0.00 0.00 1.73 F
3044 3092 0.032267 GCCATGGCGTAGTCTACTCC 59.968 60.000 23.48 11.50 34.19 3.85 F
4205 4253 1.065418 CGCCCTACCTTGATTTCCAGT 60.065 52.381 0.00 0.00 0.00 4.00 F
5164 5650 0.032912 TGGAGGCGGTACCAGACATA 60.033 55.000 13.54 0.00 43.14 2.29 F
5784 6294 0.459237 CTGCTTGTCCGAGTAGGCAG 60.459 60.000 0.00 0.00 40.52 4.85 F
5844 6354 0.532573 GGACTCAGATCCGTTGCTCA 59.467 55.000 0.00 0.00 0.00 4.26 F
5862 6372 0.812811 CACCATGCCGGAGATGACTG 60.813 60.000 5.05 1.65 38.63 3.51 F
7345 8109 0.251354 ATTGGAGCAGCTGACGTGAT 59.749 50.000 20.43 2.01 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1777 0.179092 TCCGACATCTGCAGCATCTG 60.179 55.000 9.47 6.37 34.12 2.90 R
2408 2450 0.523546 AACGACTCTGCTCGCATACG 60.524 55.000 0.00 0.00 37.15 3.06 R
4019 4067 0.036306 GACACGGACAAATGAGGGGT 59.964 55.000 0.00 0.00 0.00 4.95 R
4265 4313 0.392461 GCTCACGGCCCAATAGAACA 60.392 55.000 0.00 0.00 34.27 3.18 R
5562 6072 0.389166 GAGTCTGAGGCCAACGACAG 60.389 60.000 5.01 6.55 0.00 3.51 R
7129 7893 1.304282 CTAAGGTGGCCATGGCTGT 59.696 57.895 34.70 17.87 41.60 4.40 R
7221 7985 2.362397 GAGTCAAGAGTCCTGTGTGTCA 59.638 50.000 0.00 0.00 0.00 3.58 R
7340 8104 2.805671 TGGTGCTAGTTGAACAATCACG 59.194 45.455 0.00 0.00 34.61 4.35 R
7458 8222 3.307906 CACCCGGGTTCGAGTCCA 61.308 66.667 27.83 0.00 39.00 4.02 R
8621 9394 0.110678 TGGTATTTTGGGGTGCACGA 59.889 50.000 11.45 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 250 0.346574 TGGATCCATGGAGAAGGGGA 59.653 55.000 21.33 0.00 0.00 4.81
711 716 2.223971 TGTTTCCTCTTTTCGCTCGAGT 60.224 45.455 15.13 0.00 0.00 4.18
800 806 6.919662 CCACTAGACGCGTCCTTAAAAATATA 59.080 38.462 34.08 15.33 0.00 0.86
802 808 9.616634 CACTAGACGCGTCCTTAAAAATATATA 57.383 33.333 34.08 14.64 0.00 0.86
878 888 2.513753 CAACCACTGTAATTGCCCTCA 58.486 47.619 0.00 0.00 0.00 3.86
896 934 0.817654 CAGTGCACTCTGGTCGGATA 59.182 55.000 18.64 0.00 0.00 2.59
1439 1478 3.064820 TGGAAGAAAAACAAGAGCGACAC 59.935 43.478 0.00 0.00 0.00 3.67
1468 1507 1.133598 TCAACGCGGACGATGTTATCT 59.866 47.619 12.47 0.00 42.18 1.98
1488 1527 2.380064 TTGGAAGCAAGGATGGTGTT 57.620 45.000 0.00 0.00 37.35 3.32
1636 1675 5.820926 GCAATTTCTGTTTTGCGTTATCA 57.179 34.783 0.00 0.00 38.88 2.15
1738 1777 7.859598 CAAAGATTGCTGAAGTCATATCCTAC 58.140 38.462 0.00 0.00 0.00 3.18
2023 2062 2.357952 GGATGGTTCTTACAATTCCGCC 59.642 50.000 0.00 0.00 0.00 6.13
2038 2077 1.001974 TCCGCCCATCCATTCGATAAG 59.998 52.381 0.00 0.00 0.00 1.73
2079 2118 7.097834 GCTATGAAGGTAACACTTGTTCTACT 58.902 38.462 0.00 0.00 39.31 2.57
2082 2121 7.062749 TGAAGGTAACACTTGTTCTACTCAT 57.937 36.000 0.00 0.00 39.31 2.90
2111 2150 6.655078 AAAATTGACATGCTCAGTTTACCT 57.345 33.333 14.42 3.14 37.73 3.08
2181 2221 6.668323 ACGAAAATCATTGTTTGTCAGTAGG 58.332 36.000 0.00 0.00 0.00 3.18
2190 2232 6.827586 TTGTTTGTCAGTAGGTCACTTTTT 57.172 33.333 0.00 0.00 34.26 1.94
2291 2333 6.238566 CGATTGACAATTCTTGGTCTGCATAT 60.239 38.462 1.39 0.00 35.11 1.78
2292 2334 6.441093 TTGACAATTCTTGGTCTGCATATC 57.559 37.500 0.00 0.00 35.11 1.63
2293 2335 4.883585 TGACAATTCTTGGTCTGCATATCC 59.116 41.667 0.00 0.00 35.11 2.59
2294 2336 5.121380 ACAATTCTTGGTCTGCATATCCT 57.879 39.130 0.00 0.00 34.12 3.24
2295 2337 6.126796 TGACAATTCTTGGTCTGCATATCCTA 60.127 38.462 0.00 0.00 35.11 2.94
2296 2338 6.845908 ACAATTCTTGGTCTGCATATCCTAT 58.154 36.000 0.00 0.00 34.12 2.57
2297 2339 6.713903 ACAATTCTTGGTCTGCATATCCTATG 59.286 38.462 0.00 0.00 34.12 2.23
2403 2445 4.197750 GCTCTAGCCCCAATATGATCATG 58.802 47.826 18.72 2.98 34.31 3.07
2405 2447 5.169992 TCTAGCCCCAATATGATCATGTG 57.830 43.478 18.72 14.91 0.00 3.21
2408 2450 2.029649 GCCCCAATATGATCATGTGTGC 60.030 50.000 18.72 14.96 0.00 4.57
2424 2466 3.606826 GCGTATGCGAGCAGAGTC 58.393 61.111 7.60 0.00 41.33 3.36
2434 2476 3.624410 TGCGAGCAGAGTCGTTAGTATAA 59.376 43.478 0.00 0.00 42.17 0.98
2437 2479 5.730010 GCGAGCAGAGTCGTTAGTATAAACT 60.730 44.000 0.00 0.00 42.17 2.66
2494 2536 7.737878 CCAAGTTGGAAATCACAATGTGTGTAT 60.738 37.037 17.60 0.00 43.87 2.29
2697 2745 2.247699 ATGCTCCTGGTAGTGGTACA 57.752 50.000 0.00 0.00 0.00 2.90
2845 2893 7.231925 TGTCTGCATAATTCATTCATATTGCCT 59.768 33.333 0.00 0.00 0.00 4.75
3044 3092 0.032267 GCCATGGCGTAGTCTACTCC 59.968 60.000 23.48 11.50 34.19 3.85
3308 3356 2.489938 TGGATTTTAGCGAACAGGCT 57.510 45.000 0.00 0.00 46.88 4.58
3313 3361 5.241949 TGGATTTTAGCGAACAGGCTTTTAA 59.758 36.000 0.00 0.00 41.39 1.52
3760 3808 7.068839 GTGTATACTGCAGTCTATATGCCCTAT 59.931 40.741 25.56 9.10 43.18 2.57
4205 4253 1.065418 CGCCCTACCTTGATTTCCAGT 60.065 52.381 0.00 0.00 0.00 4.00
4224 4272 7.403312 TCCAGTGATTTGGGTTTTATGTATG 57.597 36.000 0.00 0.00 38.81 2.39
4237 4285 4.440839 TTATGTATGCAGATCGATCGCT 57.559 40.909 28.97 20.95 0.00 4.93
4265 4313 4.664688 ATCATGGGAGAAGAAAACCAGT 57.335 40.909 0.00 0.00 36.27 4.00
4333 4381 4.758251 CACGCATCGAGCCACCCA 62.758 66.667 0.00 0.00 41.38 4.51
4334 4382 3.785859 ACGCATCGAGCCACCCAT 61.786 61.111 0.00 0.00 41.38 4.00
4580 4628 9.676195 CTTATATGCATAGAATAGATCTGTCCG 57.324 37.037 13.85 0.00 39.30 4.79
4595 4643 1.757118 TGTCCGAAATGTTTTTGGGCA 59.243 42.857 9.05 9.05 39.74 5.36
4698 5178 4.388773 ACATTTCCGCGTGCATATGTATAG 59.611 41.667 4.92 0.00 0.00 1.31
4852 5337 8.441311 AGATAGCATAGGGAAGTTCATCATAA 57.559 34.615 5.01 0.00 0.00 1.90
4895 5381 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
5059 5545 7.842887 AGGACTATAGATAGGGAAAGTTCAC 57.157 40.000 6.78 0.00 34.69 3.18
5063 5549 3.889520 AGATAGGGAAAGTTCACCGAC 57.110 47.619 0.00 0.00 0.00 4.79
5116 5602 3.447944 GGAAGTAGAGGTCGAAGGTGAAT 59.552 47.826 0.00 0.00 0.00 2.57
5164 5650 0.032912 TGGAGGCGGTACCAGACATA 60.033 55.000 13.54 0.00 43.14 2.29
5355 5865 1.520600 GGTTTTGGCGTTGATCCGGT 61.521 55.000 0.00 0.00 0.00 5.28
5428 5938 1.757340 GGACGACCGGATCCTCCTT 60.757 63.158 9.46 0.00 33.30 3.36
5471 5981 4.704833 GCGGACAAGCAGAGGCCA 62.705 66.667 5.01 0.00 42.56 5.36
5562 6072 1.515519 CTGCGACCATGTGCATTGC 60.516 57.895 0.46 0.46 40.89 3.56
5646 6156 1.802880 GCAACGATAGAGCGGACACAT 60.803 52.381 0.00 0.00 41.38 3.21
5649 6159 1.957177 ACGATAGAGCGGACACATGAT 59.043 47.619 0.00 0.00 41.38 2.45
5758 6268 4.719369 GAGCGCGAACCGGACAGT 62.719 66.667 12.10 0.00 37.44 3.55
5784 6294 0.459237 CTGCTTGTCCGAGTAGGCAG 60.459 60.000 0.00 0.00 40.52 4.85
5789 6299 2.045242 TCCGAGTAGGCAGCGAGT 60.045 61.111 0.00 0.00 40.77 4.18
5844 6354 0.532573 GGACTCAGATCCGTTGCTCA 59.467 55.000 0.00 0.00 0.00 4.26
5862 6372 0.812811 CACCATGCCGGAGATGACTG 60.813 60.000 5.05 1.65 38.63 3.51
5877 6387 2.441901 CTGGAGAGGAGCGAGGCT 60.442 66.667 0.00 0.00 43.88 4.58
5917 6427 5.007682 GTCTGTTCAAAATGGCTAGGGTTA 58.992 41.667 0.00 0.00 0.00 2.85
6019 6534 5.867903 AATCTGAAGGACTGGAGTATCAG 57.132 43.478 9.08 9.08 40.40 2.90
6110 6625 3.312697 GCGAGATCTTATTGGTTTCACCC 59.687 47.826 0.00 0.00 37.50 4.61
6146 6661 3.222603 CTTGTTTGGGACTACAAGGCTT 58.777 45.455 0.00 0.00 43.02 4.35
6147 6662 3.306472 TGTTTGGGACTACAAGGCTTT 57.694 42.857 0.00 0.00 0.00 3.51
6148 6663 2.955660 TGTTTGGGACTACAAGGCTTTG 59.044 45.455 7.07 7.07 40.24 2.77
6206 6725 2.942804 TGGATTTTGTGCTGTCAGGAA 58.057 42.857 1.14 0.00 0.00 3.36
6212 6731 2.853542 TGCTGTCAGGAAGGGCCA 60.854 61.111 6.18 0.00 40.02 5.36
6291 6810 3.267597 AACAGCGCGGACATTTGGC 62.268 57.895 16.26 0.00 0.00 4.52
6299 6818 1.202770 GCGGACATTTGGCCTAGGTAT 60.203 52.381 11.31 0.00 42.58 2.73
6301 6820 3.551846 CGGACATTTGGCCTAGGTATTT 58.448 45.455 11.31 0.00 42.58 1.40
6302 6821 3.315191 CGGACATTTGGCCTAGGTATTTG 59.685 47.826 11.31 5.11 42.58 2.32
6482 7243 2.851798 CTTCCTGCACTCCTGAAGC 58.148 57.895 0.00 0.00 0.00 3.86
6665 7427 2.495270 TCTTTGCTGCAAACCAACTGAA 59.505 40.909 22.84 0.65 0.00 3.02
6683 7445 7.225145 CCAACTGAAAATCTTGCATTTCAAAGA 59.775 33.333 12.81 0.75 42.96 2.52
6710 7472 0.922717 CAATGCTAATTTTGCCGCCG 59.077 50.000 0.43 0.00 0.00 6.46
6729 7491 3.378399 GAGGGGAGCTTCAGTCCGC 62.378 68.421 0.00 0.00 45.30 5.54
6759 7521 1.693034 TGGTGCATTCCAGGCAGAT 59.307 52.632 0.00 0.00 42.85 2.90
6866 7628 3.052414 TCCCTAGGTGCAAGTACTCCATA 60.052 47.826 8.29 0.00 0.00 2.74
6922 7684 2.836372 AGATCATCTGCAACTGGTCTGA 59.164 45.455 9.54 0.00 31.69 3.27
6925 7687 2.303890 TCATCTGCAACTGGTCTGATGT 59.696 45.455 7.82 0.00 38.75 3.06
6989 7751 3.149196 AGTCAGCAATTGATTGACCGTT 58.851 40.909 26.64 14.43 41.58 4.44
7040 7802 4.081476 GCCTTTTGCAATTCCCTAGAATGT 60.081 41.667 0.00 0.00 42.03 2.71
7051 7814 6.442541 TTCCCTAGAATGTCCTTTGTTGTA 57.557 37.500 0.00 0.00 0.00 2.41
7340 8104 3.065925 GGTTATGAATTGGAGCAGCTGAC 59.934 47.826 20.43 10.42 0.00 3.51
7345 8109 0.251354 ATTGGAGCAGCTGACGTGAT 59.749 50.000 20.43 2.01 0.00 3.06
7458 8222 2.341846 ACCCAAATTCGCATCCGTAT 57.658 45.000 0.00 0.00 35.54 3.06
7588 8352 7.605691 GTGCTCTTAACTGATGGATATGCTTAT 59.394 37.037 0.00 0.00 0.00 1.73
7589 8353 8.815912 TGCTCTTAACTGATGGATATGCTTATA 58.184 33.333 0.00 0.00 0.00 0.98
7840 8604 5.461078 CAGAAGCAATGTTTCTCTTGGTTTG 59.539 40.000 9.40 0.00 41.62 2.93
7945 8710 6.353404 TGTAGTCCATAGAACATCAACACA 57.647 37.500 0.00 0.00 0.00 3.72
7979 8744 6.538742 TGTGGAGTAAATCTATGCTGCTTTAC 59.461 38.462 11.37 11.37 35.36 2.01
8203 8968 2.966732 CGGCTTGCTCCTTGGGGTA 61.967 63.158 0.00 0.00 0.00 3.69
8242 9007 3.322828 AGCTGGTTTTTGTGATGATGCTT 59.677 39.130 0.00 0.00 0.00 3.91
8331 9096 3.744238 TTGAGTTTCTGTCACCGATGA 57.256 42.857 0.00 0.00 0.00 2.92
8533 9298 2.046892 GCATGCTCTGTGGACCGT 60.047 61.111 11.37 0.00 0.00 4.83
8534 9299 1.672356 GCATGCTCTGTGGACCGTT 60.672 57.895 11.37 0.00 0.00 4.44
8535 9300 1.915614 GCATGCTCTGTGGACCGTTG 61.916 60.000 11.37 0.00 0.00 4.10
8536 9301 0.603707 CATGCTCTGTGGACCGTTGT 60.604 55.000 0.00 0.00 0.00 3.32
8537 9302 0.320771 ATGCTCTGTGGACCGTTGTC 60.321 55.000 0.00 0.00 40.98 3.18
8538 9303 1.069090 GCTCTGTGGACCGTTGTCA 59.931 57.895 0.00 0.00 43.65 3.58
8539 9304 0.531974 GCTCTGTGGACCGTTGTCAA 60.532 55.000 0.00 0.00 43.65 3.18
8540 9305 1.217882 CTCTGTGGACCGTTGTCAAC 58.782 55.000 5.58 5.58 44.45 3.18
8591 9356 4.673580 CGTCTTACTAGGCATGTACGTTGT 60.674 45.833 0.00 0.00 0.00 3.32
8598 9363 1.467374 GGCATGTACGTTGTGCATTCC 60.467 52.381 17.39 1.64 36.79 3.01
8604 9377 2.490328 ACGTTGTGCATTCCTTGTTG 57.510 45.000 0.00 0.00 0.00 3.33
8621 9394 3.407698 TGTTGTGCTCGTGGAAATACAT 58.592 40.909 0.00 0.00 0.00 2.29
8640 9413 0.110678 TCGTGCACCCCAAAATACCA 59.889 50.000 12.15 0.00 0.00 3.25
8644 9417 1.427368 TGCACCCCAAAATACCAGAGT 59.573 47.619 0.00 0.00 0.00 3.24
8681 9460 6.927933 AACAAAATTTAAGAAATCGAGCCG 57.072 33.333 0.00 0.00 0.00 5.52
8695 9474 1.785518 CGAGCCGTGTGAAATAAACGC 60.786 52.381 0.00 0.00 36.02 4.84
8697 9476 0.791610 GCCGTGTGAAATAAACGCCG 60.792 55.000 0.00 0.00 36.02 6.46
8727 9506 2.097110 TGTGGGACAGACTGGTAAGT 57.903 50.000 7.51 0.00 41.80 2.24
8728 9507 3.247948 TGTGGGACAGACTGGTAAGTA 57.752 47.619 7.51 0.00 41.80 2.24
8729 9508 2.895404 TGTGGGACAGACTGGTAAGTAC 59.105 50.000 7.51 0.00 41.80 2.73
8730 9509 3.163467 GTGGGACAGACTGGTAAGTACT 58.837 50.000 7.51 0.00 41.80 2.73
8781 9560 4.520874 TGAATAGGAAACGATTTGCACCAA 59.479 37.500 0.00 0.00 35.67 3.67
8806 9585 6.071447 ACAGGCTAGCACTAGATTGATCTATG 60.071 42.308 18.24 4.41 38.60 2.23
8824 9603 1.275666 TGTGAGGAATGATGGGTCGT 58.724 50.000 0.00 0.00 0.00 4.34
8884 9663 8.565896 ACTACAAAATTCTGCATCAGTTGATA 57.434 30.769 0.00 0.00 32.63 2.15
8916 9695 4.786575 GGCGTGAATTCTTTTCGATTGTAC 59.213 41.667 7.05 0.00 0.00 2.90
8917 9696 4.786575 GCGTGAATTCTTTTCGATTGTACC 59.213 41.667 7.05 0.00 0.00 3.34
9046 9826 2.924105 GCACAGGCCCAAGCAGAAC 61.924 63.158 0.00 0.00 42.56 3.01
9059 9839 2.460330 CAGAACTGCAACTAGGCGG 58.540 57.895 0.00 0.00 45.74 6.13
9061 9841 2.359975 AACTGCAACTAGGCGGGC 60.360 61.111 5.02 0.00 44.55 6.13
9116 9896 2.989166 CGACCAGTCTACCCGTAAAAAC 59.011 50.000 0.00 0.00 0.00 2.43
9117 9897 3.329386 GACCAGTCTACCCGTAAAAACC 58.671 50.000 0.00 0.00 0.00 3.27
9118 9898 2.974794 ACCAGTCTACCCGTAAAAACCT 59.025 45.455 0.00 0.00 0.00 3.50
9119 9899 3.244318 ACCAGTCTACCCGTAAAAACCTG 60.244 47.826 0.00 0.00 0.00 4.00
9120 9900 3.332034 CAGTCTACCCGTAAAAACCTGG 58.668 50.000 0.00 0.00 0.00 4.45
9121 9901 3.007182 CAGTCTACCCGTAAAAACCTGGA 59.993 47.826 0.00 0.00 0.00 3.86
9122 9902 3.007290 AGTCTACCCGTAAAAACCTGGAC 59.993 47.826 0.00 0.00 0.00 4.02
9123 9903 3.007290 GTCTACCCGTAAAAACCTGGACT 59.993 47.826 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 250 1.072965 CCCTCTGCACCTCTTCACTTT 59.927 52.381 0.00 0.00 0.00 2.66
589 593 2.125106 GATCACGTGCACCCTCCC 60.125 66.667 11.67 0.00 0.00 4.30
800 806 9.236006 GTAAGATAGTGATCCATGGCAAAATAT 57.764 33.333 6.96 3.53 31.81 1.28
802 808 6.491403 GGTAAGATAGTGATCCATGGCAAAAT 59.509 38.462 6.96 0.00 31.81 1.82
878 888 1.107114 CTATCCGACCAGAGTGCACT 58.893 55.000 21.88 21.88 0.00 4.40
896 934 2.044946 GGCCCATTTCAGACCGCT 60.045 61.111 0.00 0.00 0.00 5.52
1074 1113 0.976073 GTCGGATCCTGACTTGGGGA 60.976 60.000 21.90 3.40 35.96 4.81
1410 1449 5.390991 GCTCTTGTTTTTCTTCCATACGAGG 60.391 44.000 0.00 0.00 0.00 4.63
1439 1478 0.229753 GTCCGCGTTGATAGCATTCG 59.770 55.000 4.92 2.51 34.19 3.34
1468 1507 2.364970 CAACACCATCCTTGCTTCCAAA 59.635 45.455 0.00 0.00 0.00 3.28
1621 1660 4.850859 TCGGTATGATAACGCAAAACAG 57.149 40.909 4.77 0.00 39.11 3.16
1622 1661 5.113383 AGATCGGTATGATAACGCAAAACA 58.887 37.500 4.77 0.00 39.11 2.83
1636 1675 3.753294 AGATGCGGAAAAGATCGGTAT 57.247 42.857 0.00 0.00 36.61 2.73
1738 1777 0.179092 TCCGACATCTGCAGCATCTG 60.179 55.000 9.47 6.37 34.12 2.90
1799 1838 3.454812 GGTTCTGGTTCAGGCCTCTTATA 59.545 47.826 0.00 0.00 31.51 0.98
2023 2062 7.986085 AATTTCTACCTTATCGAATGGATGG 57.014 36.000 8.40 0.86 36.55 3.51
2038 2077 6.205658 CCTTCATAGCCTGCTTAATTTCTACC 59.794 42.308 0.00 0.00 0.00 3.18
2079 2118 9.399797 ACTGAGCATGTCAATTTTAGATTATGA 57.600 29.630 0.00 0.00 33.60 2.15
2152 2192 6.790282 TGACAAACAATGATTTTCGTTCTGA 58.210 32.000 0.00 0.00 0.00 3.27
2153 2193 6.692681 ACTGACAAACAATGATTTTCGTTCTG 59.307 34.615 0.00 0.00 0.00 3.02
2154 2194 6.795399 ACTGACAAACAATGATTTTCGTTCT 58.205 32.000 0.00 0.00 0.00 3.01
2155 2195 7.323656 CCTACTGACAAACAATGATTTTCGTTC 59.676 37.037 0.00 0.00 0.00 3.95
2199 2241 9.632638 ACCATACAATAATGAGCTATTGAAACT 57.367 29.630 12.76 0.00 40.34 2.66
2256 2298 5.355596 AGAATTGTCAATCGGCAACAAAAA 58.644 33.333 0.00 0.00 36.57 1.94
2261 2303 3.244976 CCAAGAATTGTCAATCGGCAAC 58.755 45.455 0.00 0.00 46.99 4.17
2291 2333 8.957466 CATACATCGAAGTAATAGGACATAGGA 58.043 37.037 4.40 0.00 0.00 2.94
2292 2334 7.702772 GCATACATCGAAGTAATAGGACATAGG 59.297 40.741 4.40 0.00 0.00 2.57
2293 2335 7.702772 GGCATACATCGAAGTAATAGGACATAG 59.297 40.741 4.40 0.00 0.00 2.23
2294 2336 7.177744 TGGCATACATCGAAGTAATAGGACATA 59.822 37.037 4.40 0.00 0.00 2.29
2295 2337 6.014584 TGGCATACATCGAAGTAATAGGACAT 60.015 38.462 4.40 0.00 0.00 3.06
2296 2338 5.303333 TGGCATACATCGAAGTAATAGGACA 59.697 40.000 4.40 1.20 0.00 4.02
2297 2339 5.779922 TGGCATACATCGAAGTAATAGGAC 58.220 41.667 4.40 0.00 0.00 3.85
2334 2376 5.278266 GCACCTTTCATTACTGTTGCACTTA 60.278 40.000 0.00 0.00 0.00 2.24
2403 2445 1.746727 CTCTGCTCGCATACGCACAC 61.747 60.000 0.00 0.00 39.84 3.82
2405 2447 1.475441 GACTCTGCTCGCATACGCAC 61.475 60.000 0.00 0.00 39.84 5.34
2408 2450 0.523546 AACGACTCTGCTCGCATACG 60.524 55.000 0.00 0.00 37.15 3.06
2434 2476 9.606631 CTTTTAGAGCACTAGATATTTCCAGTT 57.393 33.333 0.00 0.00 0.00 3.16
2680 2728 1.473434 GCATGTACCACTACCAGGAGC 60.473 57.143 0.00 0.00 0.00 4.70
2682 2730 1.200519 GGCATGTACCACTACCAGGA 58.799 55.000 0.00 0.00 0.00 3.86
2697 2745 0.630673 TAGGGTCCAATTGCTGGCAT 59.369 50.000 0.00 0.00 45.98 4.40
2845 2893 8.079203 AGTGCATTTACGATAAAAACATCACAA 58.921 29.630 0.00 0.00 0.00 3.33
3044 3092 2.048503 GGTTGTGTCGGGACCTCG 60.049 66.667 0.00 0.00 0.00 4.63
3313 3361 7.451566 AGGCAAACCAACTTAACTAATCTCATT 59.548 33.333 0.00 0.00 39.06 2.57
3330 3378 1.953686 GCAGACAACTAAGGCAAACCA 59.046 47.619 0.00 0.00 39.06 3.67
3382 3430 5.582665 GCATTGTAACTCTTTCTACCAGGAG 59.417 44.000 0.00 0.00 0.00 3.69
3433 3481 1.228124 AAACCGGCTGCTGCACTTA 60.228 52.632 17.89 0.00 41.91 2.24
3760 3808 1.293179 CATGGACAGTCTGCACCGA 59.707 57.895 0.00 0.00 0.00 4.69
3816 3864 0.183492 ACTGACAGGGCTTTGCTTGA 59.817 50.000 7.51 0.00 0.00 3.02
4019 4067 0.036306 GACACGGACAAATGAGGGGT 59.964 55.000 0.00 0.00 0.00 4.95
4162 4210 1.987855 CCTCACCTCGCCCTACCAA 60.988 63.158 0.00 0.00 0.00 3.67
4163 4211 2.363795 CCTCACCTCGCCCTACCA 60.364 66.667 0.00 0.00 0.00 3.25
4205 4253 7.468494 CGATCTGCATACATAAAACCCAAATCA 60.468 37.037 0.00 0.00 0.00 2.57
4265 4313 0.392461 GCTCACGGCCCAATAGAACA 60.392 55.000 0.00 0.00 34.27 3.18
4470 4518 1.749063 CACATACACTAGTCCCTCGCA 59.251 52.381 0.00 0.00 0.00 5.10
4471 4519 1.536284 GCACATACACTAGTCCCTCGC 60.536 57.143 0.00 0.00 0.00 5.03
4472 4520 2.025155 AGCACATACACTAGTCCCTCG 58.975 52.381 0.00 0.00 0.00 4.63
4557 4605 7.888250 TCGGACAGATCTATTCTATGCATAT 57.112 36.000 6.92 0.00 31.77 1.78
4698 5178 8.515414 ACAAATAGTTTTTCCATGTAGAAGAGC 58.485 33.333 0.00 0.00 0.00 4.09
4813 5295 1.690893 GCTATCTCCAGATCAGTGGCA 59.309 52.381 0.00 0.00 37.53 4.92
4852 5337 2.488836 AGTAATTTGGGACGGAGGGAT 58.511 47.619 0.00 0.00 0.00 3.85
5051 5537 1.890510 GTGGCCGTCGGTGAACTTT 60.891 57.895 13.94 0.00 0.00 2.66
5116 5602 2.039951 ACCGGTGGCTAGCCCTAA 59.960 61.111 30.81 10.02 34.56 2.69
5287 5774 1.301716 GTGCCGCAGAGAACAAGGA 60.302 57.895 0.00 0.00 0.00 3.36
5545 6055 1.972752 AGCAATGCACATGGTCGCA 60.973 52.632 8.35 8.85 43.45 5.10
5562 6072 0.389166 GAGTCTGAGGCCAACGACAG 60.389 60.000 5.01 6.55 0.00 3.51
5628 6138 1.749063 TCATGTGTCCGCTCTATCGTT 59.251 47.619 0.00 0.00 0.00 3.85
5646 6156 1.880894 GCAGAAGCTTGCAGCATCA 59.119 52.632 2.10 0.00 45.56 3.07
5758 6268 2.457598 ACTCGGACAAGCAGGAGATAA 58.542 47.619 0.00 0.00 0.00 1.75
5784 6294 0.595310 GGCATCGACTAGGAACTCGC 60.595 60.000 0.00 0.00 41.75 5.03
5789 6299 3.667497 GATGATGGCATCGACTAGGAA 57.333 47.619 21.65 2.73 41.31 3.36
5844 6354 1.524002 CAGTCATCTCCGGCATGGT 59.476 57.895 11.98 0.02 39.52 3.55
5862 6372 2.441164 TCAGCCTCGCTCCTCTCC 60.441 66.667 0.00 0.00 36.40 3.71
5877 6387 4.069232 CCACTCCGCTTCCGCTCA 62.069 66.667 0.00 0.00 0.00 4.26
5917 6427 1.677552 CTTTAGCCACCCTGGACGT 59.322 57.895 0.00 0.00 40.96 4.34
6019 6534 3.817647 CCTATCCATGGCTAGTTTTCTGC 59.182 47.826 18.93 0.00 0.00 4.26
6110 6625 3.933861 AACAAGTTGGGATAGGCTAGG 57.066 47.619 7.96 0.00 0.00 3.02
6146 6661 2.472861 CGCAACACAACAACAACAACAA 59.527 40.909 0.00 0.00 0.00 2.83
6147 6662 2.054363 CGCAACACAACAACAACAACA 58.946 42.857 0.00 0.00 0.00 3.33
6148 6663 2.055100 ACGCAACACAACAACAACAAC 58.945 42.857 0.00 0.00 0.00 3.32
6281 6800 3.636764 CCAAATACCTAGGCCAAATGTCC 59.363 47.826 9.30 0.00 0.00 4.02
6458 7219 1.376553 GGAGTGCAGGAAGCTGACC 60.377 63.158 0.00 2.38 45.94 4.02
6482 7243 3.684305 TCACTCATACGGCAAATGACAAG 59.316 43.478 0.00 0.00 30.38 3.16
6518 7279 6.015519 GTCTGGTGCAGTATTCAGAGATCTAT 60.016 42.308 0.00 0.00 37.00 1.98
6665 7427 4.999311 GGGCTTCTTTGAAATGCAAGATTT 59.001 37.500 0.00 0.00 37.87 2.17
6683 7445 3.602483 CAAAATTAGCATTGCTGGGCTT 58.398 40.909 21.31 6.72 40.10 4.35
6710 7472 2.726351 CGGACTGAAGCTCCCCTCC 61.726 68.421 0.00 0.00 0.00 4.30
6729 7491 1.843368 ATGCACCAGACTTTGATGGG 58.157 50.000 0.00 0.00 41.13 4.00
6759 7521 2.189676 TCTGGGTTATACTCCGCCAAA 58.810 47.619 0.00 0.00 0.00 3.28
6866 7628 2.227194 GGGTTTGTGACACGAGGAATT 58.773 47.619 0.22 0.00 0.00 2.17
6989 7751 6.126863 AGTTCTGGTTAGATGGTTTGATCA 57.873 37.500 0.00 0.00 31.81 2.92
7040 7802 5.534278 TGATGTTTCATGCTACAACAAAGGA 59.466 36.000 7.27 0.00 34.19 3.36
7051 7814 1.542915 GCCACAGTGATGTTTCATGCT 59.457 47.619 0.62 0.00 33.56 3.79
7129 7893 1.304282 CTAAGGTGGCCATGGCTGT 59.696 57.895 34.70 17.87 41.60 4.40
7221 7985 2.362397 GAGTCAAGAGTCCTGTGTGTCA 59.638 50.000 0.00 0.00 0.00 3.58
7340 8104 2.805671 TGGTGCTAGTTGAACAATCACG 59.194 45.455 0.00 0.00 34.61 4.35
7345 8109 3.630312 GGAAACTGGTGCTAGTTGAACAA 59.370 43.478 0.00 0.00 40.58 2.83
7458 8222 3.307906 CACCCGGGTTCGAGTCCA 61.308 66.667 27.83 0.00 39.00 4.02
7588 8352 7.449086 AGAACCGATTTTGTTTTAGGGATTGTA 59.551 33.333 0.00 0.00 0.00 2.41
7589 8353 6.266786 AGAACCGATTTTGTTTTAGGGATTGT 59.733 34.615 0.00 0.00 0.00 2.71
7756 8520 4.623932 TTGTGTTCACTAAGCTCCTCAT 57.376 40.909 4.59 0.00 0.00 2.90
7840 8604 6.764308 ATAGGCATCAATAACCATGTATGC 57.236 37.500 0.00 0.00 39.13 3.14
7945 8710 7.502561 GCATAGATTTACTCCACAAAATAGGGT 59.497 37.037 0.00 0.00 0.00 4.34
8203 8968 4.342092 ACCAGCTTTGTTGCTTCAAGTATT 59.658 37.500 0.00 0.00 41.98 1.89
8331 9096 6.069381 AGCCAGGAACTTCCAAGATAATTAGT 60.069 38.462 10.57 0.00 39.61 2.24
8564 9329 2.453521 ACATGCCTAGTAAGACGTCCA 58.546 47.619 13.01 0.09 0.00 4.02
8567 9332 3.012518 ACGTACATGCCTAGTAAGACGT 58.987 45.455 0.00 0.00 0.00 4.34
8591 9356 0.592637 CGAGCACAACAAGGAATGCA 59.407 50.000 0.00 0.00 40.63 3.96
8598 9363 3.249799 TGTATTTCCACGAGCACAACAAG 59.750 43.478 0.00 0.00 0.00 3.16
8604 9377 2.029244 CACGATGTATTTCCACGAGCAC 59.971 50.000 0.00 0.00 0.00 4.40
8621 9394 0.110678 TGGTATTTTGGGGTGCACGA 59.889 50.000 11.45 0.00 0.00 4.35
8664 9443 4.250464 TCACACGGCTCGATTTCTTAAAT 58.750 39.130 1.50 0.00 0.00 1.40
8667 9446 3.306917 TTCACACGGCTCGATTTCTTA 57.693 42.857 1.50 0.00 0.00 2.10
8674 9453 1.722464 CGTTTATTTCACACGGCTCGA 59.278 47.619 1.50 0.00 0.00 4.04
8676 9455 1.878373 GCGTTTATTTCACACGGCTC 58.122 50.000 0.00 0.00 34.42 4.70
8681 9460 1.465187 GGCTCGGCGTTTATTTCACAC 60.465 52.381 6.85 0.00 0.00 3.82
8712 9491 5.008980 AGTACAGTACTTACCAGTCTGTCC 58.991 45.833 7.48 2.24 39.77 4.02
8726 9505 8.630917 TGCCTCTTTAGATCATAAGTACAGTAC 58.369 37.037 2.05 2.05 0.00 2.73
8727 9506 8.762481 TGCCTCTTTAGATCATAAGTACAGTA 57.238 34.615 0.00 0.00 0.00 2.74
8728 9507 7.661536 TGCCTCTTTAGATCATAAGTACAGT 57.338 36.000 0.00 0.00 0.00 3.55
8729 9508 8.147058 ACATGCCTCTTTAGATCATAAGTACAG 58.853 37.037 0.00 0.00 0.00 2.74
8730 9509 8.023021 ACATGCCTCTTTAGATCATAAGTACA 57.977 34.615 0.00 0.00 0.00 2.90
8741 9520 5.070981 CCTATTCAGGACATGCCTCTTTAGA 59.929 44.000 5.79 0.00 46.97 2.10
8758 9537 4.075682 TGGTGCAAATCGTTTCCTATTCA 58.924 39.130 0.00 0.00 0.00 2.57
8781 9560 4.222336 AGATCAATCTAGTGCTAGCCTGT 58.778 43.478 13.29 0.00 34.85 4.00
8806 9585 3.753294 ATACGACCCATCATTCCTCAC 57.247 47.619 0.00 0.00 0.00 3.51
8824 9603 2.108075 CCATGAATGGGTGGGCACTATA 59.892 50.000 1.01 0.00 44.31 1.31
8884 9663 1.002087 AGAATTCACGCCCGACTCTTT 59.998 47.619 8.44 0.00 0.00 2.52
9046 9826 4.760047 ACGCCCGCCTAGTTGCAG 62.760 66.667 0.00 0.00 0.00 4.41
9059 9839 4.589700 CACACACACACGCACGCC 62.590 66.667 0.00 0.00 0.00 5.68
9061 9841 4.589700 GCCACACACACACGCACG 62.590 66.667 0.00 0.00 0.00 5.34
9225 10008 1.538876 TGGGTGTCAGGGGAGGAAG 60.539 63.158 0.00 0.00 0.00 3.46
9226 10009 1.846124 GTGGGTGTCAGGGGAGGAA 60.846 63.158 0.00 0.00 0.00 3.36
9325 10108 2.655685 GGCCGCTCGATCTCGTTC 60.656 66.667 0.00 0.00 40.80 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.