Multiple sequence alignment - TraesCS5A01G129900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G129900 chr5A 100.000 4850 0 0 1 4850 291591953 291596802 0.000000e+00 8957.0
1 TraesCS5A01G129900 chr5A 97.838 185 3 1 2605 2788 345670743 345670559 7.830000e-83 318.0
2 TraesCS5A01G129900 chr5A 91.981 212 15 2 2592 2801 535452365 535452576 3.670000e-76 296.0
3 TraesCS5A01G129900 chr5A 77.816 293 58 7 26 314 567567874 567567585 1.790000e-39 174.0
4 TraesCS5A01G129900 chr5A 86.905 84 9 2 2919 3000 623663326 623663409 5.170000e-15 93.5
5 TraesCS5A01G129900 chr5D 92.078 2146 97 30 517 2605 218557041 218559170 0.000000e+00 2953.0
6 TraesCS5A01G129900 chr5D 91.853 1927 91 27 2945 4850 218559282 218561163 0.000000e+00 2628.0
7 TraesCS5A01G129900 chr5D 90.730 507 41 6 1 506 218554403 218554904 0.000000e+00 671.0
8 TraesCS5A01G129900 chr5D 90.533 507 42 6 1 506 218556564 218557065 0.000000e+00 665.0
9 TraesCS5A01G129900 chr5D 93.388 121 7 1 2789 2908 218559162 218559282 1.390000e-40 178.0
10 TraesCS5A01G129900 chr5D 78.521 284 17 17 517 759 218554880 218555160 3.910000e-31 147.0
11 TraesCS5A01G129900 chr5D 90.385 52 5 0 2530 2581 557000064 557000013 8.710000e-08 69.4
12 TraesCS5A01G129900 chr5B 91.988 1710 71 29 934 2605 241166554 241168235 0.000000e+00 2338.0
13 TraesCS5A01G129900 chr5B 91.811 1563 69 22 3308 4849 241168468 241169992 0.000000e+00 2122.0
14 TraesCS5A01G129900 chr5B 86.905 252 11 7 2789 3028 241168227 241168468 3.720000e-66 263.0
15 TraesCS5A01G129900 chr5B 84.151 265 20 5 374 630 241162091 241162341 2.260000e-58 237.0
16 TraesCS5A01G129900 chr5B 93.671 79 4 1 361 439 596447700 596447777 3.070000e-22 117.0
17 TraesCS5A01G129900 chr5B 81.915 94 6 5 938 1031 711380937 711381019 8.710000e-08 69.4
18 TraesCS5A01G129900 chr7A 98.378 185 2 1 2605 2788 493517694 493517878 1.680000e-84 324.0
19 TraesCS5A01G129900 chr7A 97.826 184 3 1 2605 2787 579481375 579481192 2.820000e-82 316.0
20 TraesCS5A01G129900 chr7A 97.297 185 4 1 2605 2788 49621127 49620943 3.640000e-81 313.0
21 TraesCS5A01G129900 chr4A 97.368 190 3 2 2604 2792 116143341 116143529 6.060000e-84 322.0
22 TraesCS5A01G129900 chr6A 97.838 185 3 1 2605 2788 603917547 603917731 7.830000e-83 318.0
23 TraesCS5A01G129900 chr6A 91.176 68 6 0 2933 3000 6886867 6886934 5.170000e-15 93.5
24 TraesCS5A01G129900 chr6A 90.385 52 3 1 2554 2605 17382932 17382981 3.130000e-07 67.6
25 TraesCS5A01G129900 chr3A 96.809 188 5 1 2602 2788 701344479 701344666 3.640000e-81 313.0
26 TraesCS5A01G129900 chr3A 77.474 293 59 7 26 314 665997813 665998102 8.350000e-38 169.0
27 TraesCS5A01G129900 chr1A 97.297 185 4 1 2605 2788 7949501 7949685 3.640000e-81 313.0
28 TraesCS5A01G129900 chr7B 93.590 78 5 0 366 443 624755929 624755852 3.070000e-22 117.0
29 TraesCS5A01G129900 chr7B 95.000 40 1 1 2522 2560 703521837 703521876 1.460000e-05 62.1
30 TraesCS5A01G129900 chr1D 86.076 79 10 1 2527 2605 320189649 320189572 3.110000e-12 84.2
31 TraesCS5A01G129900 chr6D 97.500 40 1 0 2531 2570 13994229 13994268 8.710000e-08 69.4
32 TraesCS5A01G129900 chr6D 89.130 46 4 1 2516 2560 318346622 318346667 6.780000e-04 56.5
33 TraesCS5A01G129900 chr7D 90.909 44 2 2 2525 2567 212881152 212881194 1.890000e-04 58.4
34 TraesCS5A01G129900 chr6B 90.909 44 2 2 2525 2567 471675504 471675462 1.890000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G129900 chr5A 291591953 291596802 4849 False 8957.000000 8957 100.000000 1 4850 1 chr5A.!!$F1 4849
1 TraesCS5A01G129900 chr5D 218554403 218561163 6760 False 1207.000000 2953 89.517167 1 4850 6 chr5D.!!$F1 4849
2 TraesCS5A01G129900 chr5B 241166554 241169992 3438 False 1574.333333 2338 90.234667 934 4849 3 chr5B.!!$F4 3915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 238 0.093705 GCGATGTCGAAGAAGTGCAC 59.906 55.0 9.40 9.40 43.02 4.57 F
903 3074 0.180171 CACAACTCACACCACCCAGA 59.820 55.0 0.00 0.00 0.00 3.86 F
1920 4135 0.165944 CTTTGCTCGGCGTTAGTTGG 59.834 55.0 6.85 0.00 0.00 3.77 F
2624 4839 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.0 18.92 18.25 46.66 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 3536 0.535102 GGATTGGAATCGGCGATGGT 60.535 55.0 24.73 8.73 36.27 3.55 R
2603 4818 0.115547 TGTGCCCTAGACACACCCTA 59.884 55.0 12.81 0.00 42.88 3.53 R
2877 5098 0.244721 GCTGGCAAACTGGATGGAAC 59.755 55.0 0.00 0.00 0.00 3.62 R
4005 6237 0.249322 ATTTACATCGGACCCGCGAG 60.249 55.0 8.23 0.00 39.59 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.684479 TCCTCGATCAGGTCCAGGTG 60.684 60.000 9.98 0.00 43.95 4.00
59 60 1.160870 TCCAGGTGGACCAGGATGT 59.839 57.895 5.86 0.00 45.42 3.06
66 67 2.662596 GACCAGGATGTGCCGACA 59.337 61.111 0.00 0.00 43.43 4.35
129 131 1.973281 CGGCTGGTTGCAGGTGAAT 60.973 57.895 0.00 0.00 45.15 2.57
134 136 2.165167 CTGGTTGCAGGTGAATGTGAT 58.835 47.619 0.00 0.00 0.00 3.06
136 138 1.203052 GGTTGCAGGTGAATGTGATGG 59.797 52.381 0.00 0.00 0.00 3.51
148 150 0.764271 TGTGATGGTCTGCACCTTGA 59.236 50.000 0.00 0.00 44.17 3.02
155 157 3.565307 TGGTCTGCACCTTGAGAATTTT 58.435 40.909 0.00 0.00 44.17 1.82
159 161 4.216257 GTCTGCACCTTGAGAATTTTGCTA 59.784 41.667 0.00 0.00 0.00 3.49
195 197 1.643292 CCACATATTGAGCGTGGCG 59.357 57.895 0.00 0.00 43.43 5.69
198 200 2.179547 CATATTGAGCGTGGCGGCA 61.180 57.895 7.97 7.97 34.64 5.69
231 233 0.867753 CGGAGGCGATGTCGAAGAAG 60.868 60.000 6.60 0.00 43.02 2.85
236 238 0.093705 GCGATGTCGAAGAAGTGCAC 59.906 55.000 9.40 9.40 43.02 4.57
283 285 0.659427 CGCGACAGCATCATTCCAAT 59.341 50.000 0.00 0.00 45.49 3.16
316 318 3.547214 GACGTTTTCGAGGCAAATGTCAA 60.547 43.478 20.72 0.00 44.47 3.18
324 326 5.000591 TCGAGGCAAATGTCAACATAGAAA 58.999 37.500 0.00 0.00 35.10 2.52
329 331 7.725251 AGGCAAATGTCAACATAGAAAAAGAA 58.275 30.769 0.00 0.00 35.10 2.52
383 385 1.133482 TCGGGGATGTAGCTCAGATGA 60.133 52.381 0.00 0.00 0.00 2.92
393 395 2.437200 GCTCAGATGATAGAGCGCTT 57.563 50.000 13.26 4.13 46.53 4.68
437 439 0.541998 ATCGATACCCCGCATCTCCA 60.542 55.000 0.00 0.00 0.00 3.86
438 440 0.757561 TCGATACCCCGCATCTCCAA 60.758 55.000 0.00 0.00 0.00 3.53
465 467 6.625873 AAAAAGGTTTTGCTTTTGTGTGAA 57.374 29.167 0.00 0.00 33.65 3.18
479 481 6.959671 TTTGTGTGAAAAATCCTTGTCAAC 57.040 33.333 0.00 0.00 30.30 3.18
483 485 6.811170 TGTGTGAAAAATCCTTGTCAACTTTC 59.189 34.615 0.00 0.00 30.30 2.62
486 488 3.643159 AAATCCTTGTCAACTTTCGGC 57.357 42.857 0.00 0.00 0.00 5.54
506 508 3.123620 CTGACTCGCTGCTTGGCC 61.124 66.667 0.00 0.00 0.00 5.36
507 509 3.889134 CTGACTCGCTGCTTGGCCA 62.889 63.158 0.00 0.00 0.00 5.36
509 511 4.711949 ACTCGCTGCTTGGCCAGG 62.712 66.667 11.24 11.24 33.44 4.45
513 515 3.308705 GCTGCTTGGCCAGGCTTT 61.309 61.111 36.14 0.00 34.20 3.51
514 516 2.654877 CTGCTTGGCCAGGCTTTG 59.345 61.111 36.14 23.23 34.20 2.77
530 2658 1.002468 CTTTGGTTTCGTGGCTGACTG 60.002 52.381 0.00 0.00 0.00 3.51
554 2682 1.282875 GTGGCTTGAAACCTCACGC 59.717 57.895 0.00 0.00 44.14 5.34
562 2690 1.079503 GAAACCTCACGCCTCATCAC 58.920 55.000 0.00 0.00 0.00 3.06
565 2697 0.324368 ACCTCACGCCTCATCACCTA 60.324 55.000 0.00 0.00 0.00 3.08
573 2705 1.626686 CCTCATCACCTATCTCGCCT 58.373 55.000 0.00 0.00 0.00 5.52
574 2706 1.543802 CCTCATCACCTATCTCGCCTC 59.456 57.143 0.00 0.00 0.00 4.70
601 2733 3.928727 TCAAGTCGACACGGTATCTTT 57.071 42.857 19.50 0.00 0.00 2.52
638 2785 0.600255 GCCCATCCGTCCTATTCGTG 60.600 60.000 0.00 0.00 0.00 4.35
701 2862 1.577922 CTGCATCCACACACACAGC 59.422 57.895 0.00 0.00 0.00 4.40
703 2864 1.601759 GCATCCACACACACAGCCT 60.602 57.895 0.00 0.00 0.00 4.58
704 2865 1.174712 GCATCCACACACACAGCCTT 61.175 55.000 0.00 0.00 0.00 4.35
705 2866 1.321474 CATCCACACACACAGCCTTT 58.679 50.000 0.00 0.00 0.00 3.11
706 2867 1.267806 CATCCACACACACAGCCTTTC 59.732 52.381 0.00 0.00 0.00 2.62
707 2868 0.546122 TCCACACACACAGCCTTTCT 59.454 50.000 0.00 0.00 0.00 2.52
708 2869 1.064758 TCCACACACACAGCCTTTCTT 60.065 47.619 0.00 0.00 0.00 2.52
710 2871 1.334869 CACACACACAGCCTTTCTTCC 59.665 52.381 0.00 0.00 0.00 3.46
711 2872 0.954452 CACACACAGCCTTTCTTCCC 59.046 55.000 0.00 0.00 0.00 3.97
731 2896 1.604378 CTCCTTGAAGGCCACCGAT 59.396 57.895 6.30 0.00 34.61 4.18
738 2903 2.717139 GAAGGCCACCGATCGGGATC 62.717 65.000 35.87 22.84 39.97 3.36
782 2953 2.450502 ATCCCCCTCCCATTCCCG 60.451 66.667 0.00 0.00 0.00 5.14
799 2970 3.168773 CGTTCCCGGGTGAATGAAT 57.831 52.632 22.86 0.00 33.91 2.57
801 2972 2.634600 CGTTCCCGGGTGAATGAATAA 58.365 47.619 22.86 0.00 33.91 1.40
802 2973 3.011119 CGTTCCCGGGTGAATGAATAAA 58.989 45.455 22.86 0.00 33.91 1.40
803 2974 3.440872 CGTTCCCGGGTGAATGAATAAAA 59.559 43.478 22.86 0.00 33.91 1.52
804 2975 4.082679 CGTTCCCGGGTGAATGAATAAAAA 60.083 41.667 22.86 0.00 33.91 1.94
805 2976 5.165676 GTTCCCGGGTGAATGAATAAAAAC 58.834 41.667 22.86 8.79 0.00 2.43
830 3001 1.853319 GACACGCAACGACTTCCTG 59.147 57.895 0.00 0.00 0.00 3.86
886 3057 5.751243 ACGCAGATCCCATTTATTAACAC 57.249 39.130 0.00 0.00 0.00 3.32
900 3071 2.335316 TAACACAACTCACACCACCC 57.665 50.000 0.00 0.00 0.00 4.61
903 3074 0.180171 CACAACTCACACCACCCAGA 59.820 55.000 0.00 0.00 0.00 3.86
904 3075 0.180406 ACAACTCACACCACCCAGAC 59.820 55.000 0.00 0.00 0.00 3.51
905 3076 0.180171 CAACTCACACCACCCAGACA 59.820 55.000 0.00 0.00 0.00 3.41
971 3142 4.969196 CACACTCGCACCCGCACT 62.969 66.667 0.00 0.00 38.40 4.40
1359 3536 0.324614 TCGATCTGCCTTTGCTCCAA 59.675 50.000 0.00 0.00 38.71 3.53
1377 3554 1.002468 CAACCATCGCCGATTCCAATC 60.002 52.381 0.00 0.00 0.00 2.67
1378 3555 0.535102 ACCATCGCCGATTCCAATCC 60.535 55.000 0.00 0.00 31.68 3.01
1466 3644 1.327764 GCAGCGCCATTTAGTCAGTAC 59.672 52.381 2.29 0.00 0.00 2.73
1467 3645 1.933853 CAGCGCCATTTAGTCAGTACC 59.066 52.381 2.29 0.00 0.00 3.34
1519 3697 1.202031 CGCGCTGGTTTTAGTTGATCC 60.202 52.381 5.56 0.00 0.00 3.36
1520 3698 2.084546 GCGCTGGTTTTAGTTGATCCT 58.915 47.619 0.00 0.00 0.00 3.24
1632 3810 8.598041 GGGATCTCACTATCATTATTGTAAGGT 58.402 37.037 0.00 0.00 0.00 3.50
1633 3811 9.429359 GGATCTCACTATCATTATTGTAAGGTG 57.571 37.037 0.00 0.00 0.00 4.00
1744 3953 1.882189 TACGGAGGTGGGACTGGGAT 61.882 60.000 0.00 0.00 0.00 3.85
1768 3983 1.815003 CCATGGTTCAGTTCCAGCTTC 59.185 52.381 2.57 0.00 38.42 3.86
1920 4135 0.165944 CTTTGCTCGGCGTTAGTTGG 59.834 55.000 6.85 0.00 0.00 3.77
1940 4155 4.513442 TGGTACAAGCATACTGCCTAAAG 58.487 43.478 0.00 0.00 46.52 1.85
2048 4263 5.998553 CATGAGTATTTGATCATGCCAGTC 58.001 41.667 0.00 0.00 44.43 3.51
2061 4276 4.708909 TCATGCCAGTCTATAGCCATAGAG 59.291 45.833 1.76 0.00 43.03 2.43
2065 4280 5.782331 TGCCAGTCTATAGCCATAGAGAAAT 59.218 40.000 1.76 0.00 43.03 2.17
2066 4281 6.954102 TGCCAGTCTATAGCCATAGAGAAATA 59.046 38.462 1.76 0.00 43.03 1.40
2067 4282 7.093727 TGCCAGTCTATAGCCATAGAGAAATAC 60.094 40.741 1.76 0.00 43.03 1.89
2068 4283 7.123547 GCCAGTCTATAGCCATAGAGAAATACT 59.876 40.741 1.76 0.00 43.03 2.12
2188 4403 8.612486 TTTAGTACCATAGGTAATGTCCTTGA 57.388 34.615 6.43 0.00 40.12 3.02
2245 4460 9.892130 CCTTTTTAGTACAAGAGTCCTGATTAT 57.108 33.333 0.00 0.00 0.00 1.28
2377 4592 3.053395 TGAGCTGCCCCTGAATAAAATCT 60.053 43.478 0.00 0.00 0.00 2.40
2487 4702 4.216472 TCTGATGTCCGATCTAATCCTTCG 59.784 45.833 0.00 0.00 0.00 3.79
2540 4755 4.621991 CACATCATTTACTACTCCCTCCG 58.378 47.826 0.00 0.00 0.00 4.63
2545 4760 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2600 4815 9.618890 ATGAGTACAATTGTTGTAATAGCATCT 57.381 29.630 17.78 0.00 46.72 2.90
2601 4816 9.448438 TGAGTACAATTGTTGTAATAGCATCTT 57.552 29.630 17.78 0.00 46.72 2.40
2609 4824 8.902540 TTGTTGTAATAGCATCTTATAGGGTG 57.097 34.615 0.00 0.00 0.00 4.61
2610 4825 8.029782 TGTTGTAATAGCATCTTATAGGGTGT 57.970 34.615 0.00 0.00 0.00 4.16
2611 4826 7.931407 TGTTGTAATAGCATCTTATAGGGTGTG 59.069 37.037 0.00 0.00 0.00 3.82
2612 4827 7.612065 TGTAATAGCATCTTATAGGGTGTGT 57.388 36.000 0.00 0.00 0.00 3.72
2613 4828 7.667557 TGTAATAGCATCTTATAGGGTGTGTC 58.332 38.462 0.00 0.00 0.00 3.67
2614 4829 7.509318 TGTAATAGCATCTTATAGGGTGTGTCT 59.491 37.037 0.00 0.00 0.00 3.41
2615 4830 9.021807 GTAATAGCATCTTATAGGGTGTGTCTA 57.978 37.037 0.00 0.00 0.00 2.59
2616 4831 7.710676 ATAGCATCTTATAGGGTGTGTCTAG 57.289 40.000 0.00 0.00 0.00 2.43
2617 4832 4.835615 AGCATCTTATAGGGTGTGTCTAGG 59.164 45.833 0.00 0.00 0.00 3.02
2618 4833 4.021016 GCATCTTATAGGGTGTGTCTAGGG 60.021 50.000 0.00 0.00 0.00 3.53
2619 4834 3.573695 TCTTATAGGGTGTGTCTAGGGC 58.426 50.000 0.00 0.00 0.00 5.19
2620 4835 3.052414 TCTTATAGGGTGTGTCTAGGGCA 60.052 47.826 0.00 0.00 0.00 5.36
2621 4836 1.497161 ATAGGGTGTGTCTAGGGCAC 58.503 55.000 10.20 10.20 37.37 5.01
2622 4837 0.115547 TAGGGTGTGTCTAGGGCACA 59.884 55.000 14.22 14.22 43.60 4.57
2623 4838 0.547712 AGGGTGTGTCTAGGGCACAT 60.548 55.000 18.92 5.97 46.66 3.21
2624 4839 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
2625 4840 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
2626 4841 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
2627 4842 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
2628 4843 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
2629 4844 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
2630 4845 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
2655 4870 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
2656 4871 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
2657 4872 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
2658 4873 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
2659 4874 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
2660 4875 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
2661 4876 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
2662 4877 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
2663 4878 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
2664 4879 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
2665 4880 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
2666 4881 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
2667 4882 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
2668 4883 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
2669 4884 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
2670 4885 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
2671 4886 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
2672 4887 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
2673 4888 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
2674 4889 8.484641 TCTAAGTGAGTGAATCAAGCATAAAG 57.515 34.615 0.00 0.00 40.43 1.85
2675 4890 8.314021 TCTAAGTGAGTGAATCAAGCATAAAGA 58.686 33.333 0.00 0.00 40.43 2.52
2676 4891 6.981762 AGTGAGTGAATCAAGCATAAAGAG 57.018 37.500 0.00 0.00 40.43 2.85
2677 4892 6.705302 AGTGAGTGAATCAAGCATAAAGAGA 58.295 36.000 0.00 0.00 40.43 3.10
2678 4893 7.164122 AGTGAGTGAATCAAGCATAAAGAGAA 58.836 34.615 0.00 0.00 40.43 2.87
2679 4894 7.663081 AGTGAGTGAATCAAGCATAAAGAGAAA 59.337 33.333 0.00 0.00 40.43 2.52
2680 4895 8.292448 GTGAGTGAATCAAGCATAAAGAGAAAA 58.708 33.333 0.00 0.00 40.43 2.29
2681 4896 8.509690 TGAGTGAATCAAGCATAAAGAGAAAAG 58.490 33.333 0.00 0.00 34.02 2.27
2682 4897 8.627208 AGTGAATCAAGCATAAAGAGAAAAGA 57.373 30.769 0.00 0.00 0.00 2.52
2683 4898 9.071276 AGTGAATCAAGCATAAAGAGAAAAGAA 57.929 29.630 0.00 0.00 0.00 2.52
2684 4899 9.683069 GTGAATCAAGCATAAAGAGAAAAGAAA 57.317 29.630 0.00 0.00 0.00 2.52
2715 4930 4.974103 GGAAATATCCACACGAATCTCG 57.026 45.455 0.00 0.00 45.79 4.04
2716 4931 4.617959 GGAAATATCCACACGAATCTCGA 58.382 43.478 2.59 0.00 45.79 4.04
2717 4932 4.444720 GGAAATATCCACACGAATCTCGAC 59.555 45.833 2.59 0.00 45.79 4.20
2718 4933 2.750301 TATCCACACGAATCTCGACG 57.250 50.000 2.59 0.00 43.74 5.12
2719 4934 0.809385 ATCCACACGAATCTCGACGT 59.191 50.000 2.59 0.00 43.74 4.34
2720 4935 1.441738 TCCACACGAATCTCGACGTA 58.558 50.000 2.59 0.00 43.74 3.57
2721 4936 1.805943 TCCACACGAATCTCGACGTAA 59.194 47.619 2.59 0.00 43.74 3.18
2722 4937 2.159612 TCCACACGAATCTCGACGTAAG 60.160 50.000 2.59 0.00 43.74 2.34
2723 4938 2.159612 CCACACGAATCTCGACGTAAGA 60.160 50.000 2.59 2.87 43.74 2.10
2724 4939 3.487042 CCACACGAATCTCGACGTAAGAT 60.487 47.826 2.59 7.03 43.74 2.40
2725 4940 3.719840 CACACGAATCTCGACGTAAGATC 59.280 47.826 12.04 6.60 43.74 2.75
2726 4941 3.373130 ACACGAATCTCGACGTAAGATCA 59.627 43.478 12.04 0.00 43.74 2.92
2727 4942 4.142752 ACACGAATCTCGACGTAAGATCAA 60.143 41.667 12.04 0.00 43.74 2.57
2728 4943 4.970611 CACGAATCTCGACGTAAGATCAAT 59.029 41.667 12.04 0.00 43.74 2.57
2729 4944 4.970611 ACGAATCTCGACGTAAGATCAATG 59.029 41.667 12.04 6.53 43.74 2.82
2730 4945 5.205565 CGAATCTCGACGTAAGATCAATGA 58.794 41.667 12.04 0.00 43.74 2.57
2731 4946 5.114273 CGAATCTCGACGTAAGATCAATGAC 59.886 44.000 12.04 2.56 43.74 3.06
2732 4947 4.957759 TCTCGACGTAAGATCAATGACA 57.042 40.909 0.00 0.00 43.62 3.58
2733 4948 5.500645 TCTCGACGTAAGATCAATGACAT 57.499 39.130 0.00 0.00 43.62 3.06
2734 4949 6.613755 TCTCGACGTAAGATCAATGACATA 57.386 37.500 0.00 0.00 43.62 2.29
2735 4950 6.659776 TCTCGACGTAAGATCAATGACATAG 58.340 40.000 0.00 0.00 43.62 2.23
2736 4951 5.758924 TCGACGTAAGATCAATGACATAGG 58.241 41.667 0.00 0.00 43.62 2.57
2737 4952 5.529800 TCGACGTAAGATCAATGACATAGGA 59.470 40.000 0.00 0.00 43.62 2.94
2738 4953 5.625721 CGACGTAAGATCAATGACATAGGAC 59.374 44.000 0.00 0.00 43.62 3.85
2739 4954 6.513556 CGACGTAAGATCAATGACATAGGACT 60.514 42.308 0.00 0.00 43.62 3.85
2740 4955 7.113658 ACGTAAGATCAATGACATAGGACTT 57.886 36.000 0.00 0.00 43.62 3.01
2741 4956 8.234136 ACGTAAGATCAATGACATAGGACTTA 57.766 34.615 0.00 0.00 43.62 2.24
2742 4957 8.136165 ACGTAAGATCAATGACATAGGACTTAC 58.864 37.037 16.63 16.63 43.62 2.34
2743 4958 8.135529 CGTAAGATCAATGACATAGGACTTACA 58.864 37.037 21.32 0.00 37.84 2.41
2744 4959 9.988815 GTAAGATCAATGACATAGGACTTACAT 57.011 33.333 19.13 0.00 37.86 2.29
2745 4960 8.899427 AAGATCAATGACATAGGACTTACATG 57.101 34.615 0.00 0.00 0.00 3.21
2746 4961 8.027524 AGATCAATGACATAGGACTTACATGT 57.972 34.615 2.69 2.69 35.65 3.21
2747 4962 7.930325 AGATCAATGACATAGGACTTACATGTG 59.070 37.037 9.11 0.00 33.16 3.21
2748 4963 5.817296 TCAATGACATAGGACTTACATGTGC 59.183 40.000 9.11 0.00 33.16 4.57
2749 4964 4.817318 TGACATAGGACTTACATGTGCA 57.183 40.909 9.11 0.00 33.16 4.57
2750 4965 5.159273 TGACATAGGACTTACATGTGCAA 57.841 39.130 9.11 0.00 33.16 4.08
2751 4966 5.744171 TGACATAGGACTTACATGTGCAAT 58.256 37.500 9.11 0.00 33.16 3.56
2752 4967 6.883744 TGACATAGGACTTACATGTGCAATA 58.116 36.000 9.11 0.00 33.16 1.90
2753 4968 6.761242 TGACATAGGACTTACATGTGCAATAC 59.239 38.462 9.11 0.00 33.16 1.89
2754 4969 6.889198 ACATAGGACTTACATGTGCAATACT 58.111 36.000 9.11 0.00 31.83 2.12
2755 4970 7.338710 ACATAGGACTTACATGTGCAATACTT 58.661 34.615 9.11 0.00 31.83 2.24
2756 4971 8.482943 ACATAGGACTTACATGTGCAATACTTA 58.517 33.333 9.11 0.00 31.83 2.24
2757 4972 9.494271 CATAGGACTTACATGTGCAATACTTAT 57.506 33.333 9.11 0.00 0.00 1.73
2758 4973 7.792374 AGGACTTACATGTGCAATACTTATG 57.208 36.000 9.11 0.00 0.00 1.90
2759 4974 6.767902 AGGACTTACATGTGCAATACTTATGG 59.232 38.462 9.11 0.00 0.00 2.74
2760 4975 6.377327 ACTTACATGTGCAATACTTATGGC 57.623 37.500 9.11 0.00 33.16 4.40
2761 4976 5.885352 ACTTACATGTGCAATACTTATGGCA 59.115 36.000 9.11 0.00 40.19 4.92
2810 5025 8.829746 ACTGCATCTTATATTATGGGATGAAGA 58.170 33.333 22.15 9.62 40.59 2.87
2921 5148 2.545742 CCTTTGGCAGCACAGTTTAACC 60.546 50.000 0.00 0.00 0.00 2.85
2941 5168 8.737168 TTAACCGTAGTAATCTAAGCTCAGTA 57.263 34.615 0.00 0.00 0.00 2.74
2942 5169 7.820578 AACCGTAGTAATCTAAGCTCAGTAT 57.179 36.000 0.00 0.00 0.00 2.12
2943 5170 7.820578 ACCGTAGTAATCTAAGCTCAGTATT 57.179 36.000 0.00 0.00 0.00 1.89
3071 5298 6.415573 AGAAAAACATGGTAGTGGAGATACC 58.584 40.000 0.00 0.00 42.62 2.73
3130 5357 7.499321 AACACATTGACGTATTTAGAACCAA 57.501 32.000 0.00 0.00 0.00 3.67
3209 5437 7.777095 ACCGAAATTGCTTGCCTATTTTTATA 58.223 30.769 0.00 0.00 30.71 0.98
3244 5472 8.306761 ACTAATTGACCATTTTCAGATTTGTCC 58.693 33.333 0.00 0.00 0.00 4.02
3245 5473 6.923199 ATTGACCATTTTCAGATTTGTCCT 57.077 33.333 0.00 0.00 0.00 3.85
3248 5476 5.832595 TGACCATTTTCAGATTTGTCCTTCA 59.167 36.000 0.00 0.00 0.00 3.02
3254 5482 8.758715 CATTTTCAGATTTGTCCTTCAAACTTC 58.241 33.333 0.00 0.00 46.77 3.01
3265 5493 4.099881 TCCTTCAAACTTCATTGCTTTGCT 59.900 37.500 0.00 0.00 0.00 3.91
3267 5495 3.719924 TCAAACTTCATTGCTTTGCTGG 58.280 40.909 0.00 0.00 0.00 4.85
3271 5499 1.820519 CTTCATTGCTTTGCTGGGCTA 59.179 47.619 0.00 0.00 0.00 3.93
3276 5504 2.332063 TGCTTTGCTGGGCTAGTATC 57.668 50.000 0.00 0.00 0.00 2.24
3279 5507 2.875317 GCTTTGCTGGGCTAGTATCTTC 59.125 50.000 0.00 0.00 0.00 2.87
3350 5582 9.606631 AGTCTGTTCTATTCTGTATTTCCATTC 57.393 33.333 0.00 0.00 0.00 2.67
3415 5647 7.227512 CACCAAAATCTAGACTCTGAACTGTTT 59.772 37.037 0.00 0.00 0.00 2.83
3423 5655 5.491982 AGACTCTGAACTGTTTGTGTCTTT 58.508 37.500 17.87 6.25 31.83 2.52
3598 5830 1.967319 TCCCGATAGCAAGCAAATCC 58.033 50.000 0.00 0.00 0.00 3.01
3606 5838 2.043953 AAGCAAATCCCGCCTCCC 60.044 61.111 0.00 0.00 0.00 4.30
3689 5921 3.259625 TCAATATCGGATCCGTGCCATTA 59.740 43.478 32.15 12.98 40.74 1.90
3738 5970 1.988107 AGGGCATCAGAGGTTCTTCAA 59.012 47.619 0.00 0.00 0.00 2.69
3746 5978 3.554324 TCAGAGGTTCTTCAAAACGAACG 59.446 43.478 0.00 0.00 40.21 3.95
3770 6002 0.456221 CAGGCGAATCGGACAGTACT 59.544 55.000 4.35 0.00 0.00 2.73
3774 6006 0.591741 CGAATCGGACAGTACTCGGC 60.592 60.000 0.00 0.00 0.00 5.54
3805 6037 2.617274 GGGCCAGACAACTTGACGC 61.617 63.158 4.39 0.00 0.00 5.19
3902 6134 0.755698 GGTCGTGATCTCCCCAGCTA 60.756 60.000 0.00 0.00 0.00 3.32
3977 6209 1.474077 GAAACATCTGCCCATGTGGAC 59.526 52.381 0.00 0.00 37.07 4.02
3979 6211 1.820906 CATCTGCCCATGTGGACGG 60.821 63.158 0.00 0.00 37.39 4.79
3997 6229 3.284323 CGGACGGATGTCTGTTATAGG 57.716 52.381 0.00 0.00 44.88 2.57
4005 6237 7.659186 ACGGATGTCTGTTATAGGTTAGATTC 58.341 38.462 0.00 0.00 29.59 2.52
4006 6238 7.506261 ACGGATGTCTGTTATAGGTTAGATTCT 59.494 37.037 0.00 0.00 29.59 2.40
4015 6247 0.249363 GGTTAGATTCTCGCGGGTCC 60.249 60.000 5.57 0.00 0.00 4.46
4036 6268 7.661847 GGGTCCGATGTAAATATGAGAAATCTT 59.338 37.037 0.00 0.00 0.00 2.40
4123 6355 4.472701 TGGTAGGCCACGGAGAAT 57.527 55.556 5.01 0.00 40.46 2.40
4124 6356 2.691663 TGGTAGGCCACGGAGAATT 58.308 52.632 5.01 0.00 40.46 2.17
4125 6357 0.251916 TGGTAGGCCACGGAGAATTG 59.748 55.000 5.01 0.00 40.46 2.32
4137 6369 4.152402 CACGGAGAATTGTTGTTGTAGGAG 59.848 45.833 0.00 0.00 0.00 3.69
4166 6398 5.008980 TCATCAGTGCATGTACCAATTCAA 58.991 37.500 10.59 0.00 0.00 2.69
4181 6413 6.581712 ACCAATTCAAAACAGCTACAAACAT 58.418 32.000 0.00 0.00 0.00 2.71
4182 6414 7.721402 ACCAATTCAAAACAGCTACAAACATA 58.279 30.769 0.00 0.00 0.00 2.29
4183 6415 8.367156 ACCAATTCAAAACAGCTACAAACATAT 58.633 29.630 0.00 0.00 0.00 1.78
4214 6449 7.065443 TGAGATGACTGTTTTAATGCAGATGAG 59.935 37.037 12.06 0.00 36.62 2.90
4215 6450 5.300969 TGACTGTTTTAATGCAGATGAGC 57.699 39.130 12.06 0.00 36.62 4.26
4216 6451 5.005740 TGACTGTTTTAATGCAGATGAGCT 58.994 37.500 12.06 0.00 36.62 4.09
4250 6496 2.311542 TGGGTAGGGCATCTTGATTTGT 59.688 45.455 0.00 0.00 0.00 2.83
4260 6506 4.919754 GCATCTTGATTTGTTGGTTGAGAC 59.080 41.667 0.00 0.00 0.00 3.36
4279 6525 5.348724 TGAGACGACTGTTTTAATGCAGATC 59.651 40.000 12.06 7.56 36.62 2.75
4281 6527 5.877012 AGACGACTGTTTTAATGCAGATCAT 59.123 36.000 12.06 0.00 36.62 2.45
4304 6550 6.882610 TGAACTGATGAGCTAACAAACATT 57.117 33.333 0.00 0.00 0.00 2.71
4358 6604 6.829298 AGAGAATTCTTCATGAACAGCATCAT 59.171 34.615 9.87 0.00 40.64 2.45
4359 6605 7.339721 AGAGAATTCTTCATGAACAGCATCATT 59.660 33.333 9.87 0.00 37.96 2.57
4419 6669 0.945743 CGTGCTGCTGCTTCAGTGTA 60.946 55.000 17.00 0.00 40.48 2.90
4451 6701 4.389374 CAACTCACCATGGTTAAGTGACT 58.611 43.478 23.95 10.82 35.67 3.41
4464 6714 5.466819 GTTAAGTGACTTAACCCAATTGCC 58.533 41.667 28.92 8.41 45.67 4.52
4564 6814 4.545208 TTCGGGATCACAACATCTAACA 57.455 40.909 0.00 0.00 0.00 2.41
4568 6818 3.689649 GGGATCACAACATCTAACACCAC 59.310 47.826 0.00 0.00 0.00 4.16
4581 6831 6.930667 TCTAACACCACAATGATGATGATG 57.069 37.500 0.00 0.00 0.00 3.07
4582 6832 6.652053 TCTAACACCACAATGATGATGATGA 58.348 36.000 0.00 0.00 0.00 2.92
4583 6833 7.284820 TCTAACACCACAATGATGATGATGAT 58.715 34.615 0.00 0.00 0.00 2.45
4584 6834 5.767816 ACACCACAATGATGATGATGATG 57.232 39.130 0.00 0.00 0.00 3.07
4585 6835 5.442391 ACACCACAATGATGATGATGATGA 58.558 37.500 0.00 0.00 0.00 2.92
4586 6836 6.068670 ACACCACAATGATGATGATGATGAT 58.931 36.000 0.00 0.00 0.00 2.45
4681 6931 3.447586 TGGTAGATCTAACAGTGTGCTCC 59.552 47.826 16.71 4.25 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.209504 CCTCCCAAACTCGAATAGCCA 59.790 52.381 0.00 0.00 0.00 4.75
9 10 4.966805 AGGATTACCTCCCAAACTCGAATA 59.033 41.667 0.00 0.00 46.27 1.75
48 49 2.125106 GTCGGCACATCCTGGTCC 60.125 66.667 0.00 0.00 0.00 4.46
59 60 4.641645 CCAAGGGCTGTGTCGGCA 62.642 66.667 0.00 0.00 37.51 5.69
110 112 2.697147 ATTCACCTGCAACCAGCCGT 62.697 55.000 0.00 0.00 44.83 5.68
129 131 0.764271 TCAAGGTGCAGACCATCACA 59.236 50.000 0.00 0.00 45.98 3.58
134 136 2.957402 AATTCTCAAGGTGCAGACCA 57.043 45.000 0.00 0.00 45.98 4.02
136 138 3.005155 AGCAAAATTCTCAAGGTGCAGAC 59.995 43.478 0.00 0.00 34.44 3.51
148 150 1.682087 GGCGGACCCTAGCAAAATTCT 60.682 52.381 0.00 0.00 34.54 2.40
182 184 1.887242 GATGCCGCCACGCTCAATA 60.887 57.895 0.00 0.00 0.00 1.90
195 197 1.584483 CGTGCAATGCGAAGATGCC 60.584 57.895 0.00 0.00 39.31 4.40
198 200 1.091771 CCTCCGTGCAATGCGAAGAT 61.092 55.000 0.00 0.00 0.00 2.40
207 209 2.434185 GACATCGCCTCCGTGCAA 60.434 61.111 0.00 0.00 35.54 4.08
219 221 3.364366 CCTTTGTGCACTTCTTCGACATC 60.364 47.826 19.41 0.00 0.00 3.06
231 233 1.299089 GCCGAACACCTTTGTGCAC 60.299 57.895 10.75 10.75 46.86 4.57
236 238 2.281208 TCGGGCCGAACACCTTTG 60.281 61.111 29.11 0.00 31.06 2.77
270 272 3.004419 CGCTCAATGATTGGAATGATGCT 59.996 43.478 5.20 0.00 0.00 3.79
271 273 3.305964 CGCTCAATGATTGGAATGATGC 58.694 45.455 5.20 0.00 0.00 3.91
272 274 3.305131 CCCGCTCAATGATTGGAATGATG 60.305 47.826 5.20 0.00 0.00 3.07
273 275 2.889045 CCCGCTCAATGATTGGAATGAT 59.111 45.455 5.20 0.00 0.00 2.45
274 276 2.092484 TCCCGCTCAATGATTGGAATGA 60.092 45.455 5.20 0.00 0.00 2.57
283 285 1.153353 GAAAACGTCCCGCTCAATGA 58.847 50.000 0.00 0.00 0.00 2.57
393 395 1.522355 GCCTCTCGCATGCTAAGCA 60.522 57.895 17.13 0.00 44.86 3.91
447 449 6.027131 GGATTTTTCACACAAAAGCAAAACC 58.973 36.000 0.00 0.00 34.37 3.27
455 457 7.158021 AGTTGACAAGGATTTTTCACACAAAA 58.842 30.769 0.00 0.00 0.00 2.44
459 461 6.020678 CGAAAGTTGACAAGGATTTTTCACAC 60.021 38.462 0.00 0.00 0.00 3.82
465 467 3.243737 GGCCGAAAGTTGACAAGGATTTT 60.244 43.478 0.00 0.00 0.00 1.82
479 481 3.181967 CGAGTCAGCGGCCGAAAG 61.182 66.667 33.48 17.79 0.00 2.62
486 488 3.485431 CAAGCAGCGAGTCAGCGG 61.485 66.667 0.00 0.00 43.00 5.52
506 508 1.007387 GCCACGAAACCAAAGCCTG 60.007 57.895 0.00 0.00 0.00 4.85
507 509 1.152756 AGCCACGAAACCAAAGCCT 60.153 52.632 0.00 0.00 0.00 4.58
509 511 0.317854 GTCAGCCACGAAACCAAAGC 60.318 55.000 0.00 0.00 0.00 3.51
510 512 1.002468 CAGTCAGCCACGAAACCAAAG 60.002 52.381 0.00 0.00 0.00 2.77
511 513 1.021202 CAGTCAGCCACGAAACCAAA 58.979 50.000 0.00 0.00 0.00 3.28
512 514 0.817634 CCAGTCAGCCACGAAACCAA 60.818 55.000 0.00 0.00 0.00 3.67
513 515 1.227823 CCAGTCAGCCACGAAACCA 60.228 57.895 0.00 0.00 0.00 3.67
514 516 2.617274 GCCAGTCAGCCACGAAACC 61.617 63.158 0.00 0.00 0.00 3.27
515 517 1.598130 AGCCAGTCAGCCACGAAAC 60.598 57.895 0.00 0.00 0.00 2.78
516 518 1.597854 CAGCCAGTCAGCCACGAAA 60.598 57.895 0.00 0.00 0.00 3.46
517 519 2.031012 CAGCCAGTCAGCCACGAA 59.969 61.111 0.00 0.00 0.00 3.85
518 520 4.687215 GCAGCCAGTCAGCCACGA 62.687 66.667 0.00 0.00 0.00 4.35
520 522 4.996434 ACGCAGCCAGTCAGCCAC 62.996 66.667 0.00 0.00 0.00 5.01
530 2658 2.050077 GTTTCAAGCCACGCAGCC 60.050 61.111 0.00 0.00 0.00 4.85
554 2682 1.543802 GAGGCGAGATAGGTGATGAGG 59.456 57.143 0.00 0.00 0.00 3.86
573 2705 0.728129 GTGTCGACTTGATCACGCGA 60.728 55.000 15.93 12.31 0.00 5.87
574 2706 1.696644 GTGTCGACTTGATCACGCG 59.303 57.895 17.92 3.53 0.00 6.01
584 2716 1.475682 GGGAAAGATACCGTGTCGACT 59.524 52.381 17.92 0.00 0.00 4.18
638 2785 2.645730 CCAGCGGCAGATAGATAGAC 57.354 55.000 1.45 0.00 0.00 2.59
688 2849 0.546122 AGAAAGGCTGTGTGTGTGGA 59.454 50.000 0.00 0.00 0.00 4.02
695 2856 1.068352 AGGGGGAAGAAAGGCTGTGT 61.068 55.000 0.00 0.00 0.00 3.72
701 2862 1.372501 TCAAGGAGGGGGAAGAAAGG 58.627 55.000 0.00 0.00 0.00 3.11
703 2864 1.710809 CCTTCAAGGAGGGGGAAGAAA 59.289 52.381 0.00 0.00 40.28 2.52
704 2865 1.372501 CCTTCAAGGAGGGGGAAGAA 58.627 55.000 0.00 0.00 40.28 2.52
705 2866 1.208165 GCCTTCAAGGAGGGGGAAGA 61.208 60.000 7.98 0.00 40.28 2.87
706 2867 1.304617 GCCTTCAAGGAGGGGGAAG 59.695 63.158 7.98 0.00 37.67 3.46
707 2868 2.238701 GGCCTTCAAGGAGGGGGAA 61.239 63.158 7.98 0.00 37.67 3.97
708 2869 2.614013 GGCCTTCAAGGAGGGGGA 60.614 66.667 7.98 0.00 37.67 4.81
710 2871 2.356667 GTGGCCTTCAAGGAGGGG 59.643 66.667 7.98 0.00 37.67 4.79
711 2872 2.356667 GGTGGCCTTCAAGGAGGG 59.643 66.667 7.98 0.00 37.67 4.30
770 2936 2.595655 GGGAACGGGAATGGGAGG 59.404 66.667 0.00 0.00 0.00 4.30
782 2953 5.165676 GTTTTTATTCATTCACCCGGGAAC 58.834 41.667 32.02 12.52 0.00 3.62
790 2961 3.606346 CGCGTGGGTTTTTATTCATTCAC 59.394 43.478 0.00 0.00 0.00 3.18
796 2967 2.577450 GTGTCGCGTGGGTTTTTATTC 58.423 47.619 5.77 0.00 0.00 1.75
799 2970 1.933005 CGTGTCGCGTGGGTTTTTA 59.067 52.632 5.77 0.00 35.54 1.52
801 2972 3.944233 GCGTGTCGCGTGGGTTTT 61.944 61.111 5.77 0.00 44.55 2.43
830 3001 2.969827 CCGTTGGGTTGGGCATTC 59.030 61.111 0.00 0.00 0.00 2.67
863 3034 6.350103 TGTGTTAATAAATGGGATCTGCGTA 58.650 36.000 0.00 0.00 0.00 4.42
886 3057 0.180171 TGTCTGGGTGGTGTGAGTTG 59.820 55.000 0.00 0.00 0.00 3.16
900 3071 1.398041 CTGTCTCTCGCTCTCTGTCTG 59.602 57.143 0.00 0.00 0.00 3.51
903 3074 1.312371 GCCTGTCTCTCGCTCTCTGT 61.312 60.000 0.00 0.00 0.00 3.41
904 3075 1.311651 TGCCTGTCTCTCGCTCTCTG 61.312 60.000 0.00 0.00 0.00 3.35
905 3076 1.001517 TGCCTGTCTCTCGCTCTCT 60.002 57.895 0.00 0.00 0.00 3.10
1290 3464 1.152922 GGAGTCGGAGTCGGAGGAT 60.153 63.158 6.74 0.00 36.95 3.24
1333 3507 1.118838 AAAGGCAGATCGAGGAGGAG 58.881 55.000 0.00 0.00 0.00 3.69
1334 3508 0.826715 CAAAGGCAGATCGAGGAGGA 59.173 55.000 0.00 0.00 0.00 3.71
1335 3509 0.813210 GCAAAGGCAGATCGAGGAGG 60.813 60.000 0.00 0.00 40.72 4.30
1359 3536 0.535102 GGATTGGAATCGGCGATGGT 60.535 55.000 24.73 8.73 36.27 3.55
1466 3644 1.617322 TCCGATGAATACGAGGGAGG 58.383 55.000 0.00 0.00 0.00 4.30
1467 3645 3.944055 ATTCCGATGAATACGAGGGAG 57.056 47.619 0.00 0.00 39.44 4.30
1519 3697 4.878397 CCAAATCAGTGGCCTAACTAAGAG 59.122 45.833 3.32 0.00 0.00 2.85
1520 3698 4.324254 CCCAAATCAGTGGCCTAACTAAGA 60.324 45.833 3.32 0.00 37.34 2.10
1600 3778 9.790344 CAATAATGATAGTGAGATCCCTCTTTT 57.210 33.333 0.00 0.00 40.10 2.27
1744 3953 2.945440 GCTGGAACTGAACCATGGCATA 60.945 50.000 13.04 0.00 36.79 3.14
1768 3983 6.597672 TGTGTTACCAGCTTACATTATTCAGG 59.402 38.462 0.00 0.00 0.00 3.86
2065 4280 9.772973 TGCTTGAAGATTTTTCAGTAGTAAGTA 57.227 29.630 0.00 0.00 0.00 2.24
2066 4281 8.677148 TGCTTGAAGATTTTTCAGTAGTAAGT 57.323 30.769 0.00 0.00 0.00 2.24
2067 4282 7.748241 GCTGCTTGAAGATTTTTCAGTAGTAAG 59.252 37.037 0.00 0.00 0.00 2.34
2068 4283 7.228507 TGCTGCTTGAAGATTTTTCAGTAGTAA 59.771 33.333 0.00 0.00 0.00 2.24
2188 4403 2.814805 ATCTTAGGCACCAACATGCT 57.185 45.000 0.00 0.00 45.38 3.79
2245 4460 2.106857 AGTCAATCCCCGTTAAACACCA 59.893 45.455 0.00 0.00 0.00 4.17
2377 4592 5.541845 CGATGCCTCATTATTCCTCAGTAA 58.458 41.667 0.00 0.00 0.00 2.24
2393 4608 6.936900 ACTCAATATACTTAATTGCGATGCCT 59.063 34.615 0.00 0.00 34.89 4.75
2540 4755 9.826574 TTGTAGTAACATCTTATATTGTGGGAC 57.173 33.333 0.00 0.00 34.97 4.46
2585 4800 7.931407 CACACCCTATAAGATGCTATTACAACA 59.069 37.037 0.00 0.00 0.00 3.33
2595 4810 4.021016 CCCTAGACACACCCTATAAGATGC 60.021 50.000 0.00 0.00 0.00 3.91
2596 4811 4.021016 GCCCTAGACACACCCTATAAGATG 60.021 50.000 0.00 0.00 0.00 2.90
2597 4812 4.161102 GCCCTAGACACACCCTATAAGAT 58.839 47.826 0.00 0.00 0.00 2.40
2598 4813 3.052414 TGCCCTAGACACACCCTATAAGA 60.052 47.826 0.00 0.00 0.00 2.10
2599 4814 3.069729 GTGCCCTAGACACACCCTATAAG 59.930 52.174 10.07 0.00 37.96 1.73
2600 4815 3.036091 GTGCCCTAGACACACCCTATAA 58.964 50.000 10.07 0.00 37.96 0.98
2601 4816 2.023791 TGTGCCCTAGACACACCCTATA 60.024 50.000 12.81 0.00 42.88 1.31
2602 4817 1.273609 TGTGCCCTAGACACACCCTAT 60.274 52.381 12.81 0.00 42.88 2.57
2603 4818 0.115547 TGTGCCCTAGACACACCCTA 59.884 55.000 12.81 0.00 42.88 3.53
2604 4819 1.152118 TGTGCCCTAGACACACCCT 60.152 57.895 12.81 0.00 42.88 4.34
2605 4820 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
2609 4824 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
2631 4846 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
2632 4847 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
2633 4848 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
2634 4849 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
2635 4850 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
2636 4851 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
2637 4852 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
2638 4853 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
2639 4854 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
2640 4855 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
2641 4856 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
2642 4857 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
2643 4858 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
2644 4859 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
2645 4860 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
2646 4861 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
2647 4862 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
2648 4863 9.107177 CTTTATGCTTGATTCACTCACTTAGAT 57.893 33.333 0.00 0.00 32.17 1.98
2649 4864 8.314021 TCTTTATGCTTGATTCACTCACTTAGA 58.686 33.333 0.00 0.00 32.17 2.10
2650 4865 8.484641 TCTTTATGCTTGATTCACTCACTTAG 57.515 34.615 0.00 0.00 32.17 2.18
2651 4866 8.314021 TCTCTTTATGCTTGATTCACTCACTTA 58.686 33.333 0.00 0.00 32.17 2.24
2652 4867 7.164122 TCTCTTTATGCTTGATTCACTCACTT 58.836 34.615 0.00 0.00 32.17 3.16
2653 4868 6.705302 TCTCTTTATGCTTGATTCACTCACT 58.295 36.000 0.00 0.00 32.17 3.41
2654 4869 6.974932 TCTCTTTATGCTTGATTCACTCAC 57.025 37.500 0.00 0.00 32.17 3.51
2655 4870 7.984422 TTTCTCTTTATGCTTGATTCACTCA 57.016 32.000 0.00 0.00 0.00 3.41
2656 4871 8.725148 TCTTTTCTCTTTATGCTTGATTCACTC 58.275 33.333 0.00 0.00 0.00 3.51
2657 4872 8.627208 TCTTTTCTCTTTATGCTTGATTCACT 57.373 30.769 0.00 0.00 0.00 3.41
2658 4873 9.683069 TTTCTTTTCTCTTTATGCTTGATTCAC 57.317 29.630 0.00 0.00 0.00 3.18
2683 4898 7.014808 TCGTGTGGATATTTCCCTTTTCTTTTT 59.985 33.333 0.00 0.00 41.83 1.94
2684 4899 6.492087 TCGTGTGGATATTTCCCTTTTCTTTT 59.508 34.615 0.00 0.00 41.83 2.27
2685 4900 6.007703 TCGTGTGGATATTTCCCTTTTCTTT 58.992 36.000 0.00 0.00 41.83 2.52
2686 4901 5.566469 TCGTGTGGATATTTCCCTTTTCTT 58.434 37.500 0.00 0.00 41.83 2.52
2687 4902 5.174037 TCGTGTGGATATTTCCCTTTTCT 57.826 39.130 0.00 0.00 41.83 2.52
2688 4903 5.890424 TTCGTGTGGATATTTCCCTTTTC 57.110 39.130 0.00 0.00 41.83 2.29
2689 4904 6.187682 AGATTCGTGTGGATATTTCCCTTTT 58.812 36.000 0.00 0.00 41.83 2.27
2690 4905 5.755849 AGATTCGTGTGGATATTTCCCTTT 58.244 37.500 0.00 0.00 41.83 3.11
2691 4906 5.368989 GAGATTCGTGTGGATATTTCCCTT 58.631 41.667 0.00 0.00 41.83 3.95
2692 4907 4.501571 CGAGATTCGTGTGGATATTTCCCT 60.502 45.833 0.00 0.00 36.80 4.20
2693 4908 3.741344 CGAGATTCGTGTGGATATTTCCC 59.259 47.826 0.00 0.00 36.80 3.97
2694 4909 4.444720 GTCGAGATTCGTGTGGATATTTCC 59.555 45.833 0.00 0.00 41.35 3.13
2695 4910 4.146616 CGTCGAGATTCGTGTGGATATTTC 59.853 45.833 0.00 0.00 41.35 2.17
2696 4911 4.042398 CGTCGAGATTCGTGTGGATATTT 58.958 43.478 0.00 0.00 41.35 1.40
2697 4912 3.066342 ACGTCGAGATTCGTGTGGATATT 59.934 43.478 0.00 0.00 41.35 1.28
2698 4913 2.617308 ACGTCGAGATTCGTGTGGATAT 59.383 45.455 0.00 0.00 41.35 1.63
2699 4914 2.011947 ACGTCGAGATTCGTGTGGATA 58.988 47.619 0.00 0.00 41.35 2.59
2700 4915 0.809385 ACGTCGAGATTCGTGTGGAT 59.191 50.000 0.00 0.00 41.35 3.41
2701 4916 1.441738 TACGTCGAGATTCGTGTGGA 58.558 50.000 8.84 0.00 41.35 4.02
2702 4917 2.159612 TCTTACGTCGAGATTCGTGTGG 60.160 50.000 8.84 0.44 41.35 4.17
2703 4918 3.113325 TCTTACGTCGAGATTCGTGTG 57.887 47.619 8.84 2.52 41.35 3.82
2704 4919 3.373130 TGATCTTACGTCGAGATTCGTGT 59.627 43.478 13.64 2.15 41.35 4.49
2705 4920 3.936661 TGATCTTACGTCGAGATTCGTG 58.063 45.455 13.64 0.00 41.35 4.35
2706 4921 4.611310 TTGATCTTACGTCGAGATTCGT 57.389 40.909 13.64 4.19 41.35 3.85
2707 4922 5.114273 GTCATTGATCTTACGTCGAGATTCG 59.886 44.000 13.64 0.00 42.10 3.34
2708 4923 5.971792 TGTCATTGATCTTACGTCGAGATTC 59.028 40.000 13.64 8.91 34.13 2.52
2709 4924 5.891451 TGTCATTGATCTTACGTCGAGATT 58.109 37.500 13.64 0.00 34.13 2.40
2710 4925 5.500645 TGTCATTGATCTTACGTCGAGAT 57.499 39.130 12.62 12.62 36.60 2.75
2711 4926 4.957759 TGTCATTGATCTTACGTCGAGA 57.042 40.909 0.00 0.00 0.00 4.04
2712 4927 5.853810 CCTATGTCATTGATCTTACGTCGAG 59.146 44.000 0.00 0.00 0.00 4.04
2713 4928 5.529800 TCCTATGTCATTGATCTTACGTCGA 59.470 40.000 0.00 0.00 0.00 4.20
2714 4929 5.625721 GTCCTATGTCATTGATCTTACGTCG 59.374 44.000 0.00 0.00 0.00 5.12
2715 4930 6.740110 AGTCCTATGTCATTGATCTTACGTC 58.260 40.000 0.00 0.00 0.00 4.34
2716 4931 6.716934 AGTCCTATGTCATTGATCTTACGT 57.283 37.500 0.00 0.00 0.00 3.57
2717 4932 8.135529 TGTAAGTCCTATGTCATTGATCTTACG 58.864 37.037 20.82 0.00 38.13 3.18
2718 4933 9.988815 ATGTAAGTCCTATGTCATTGATCTTAC 57.011 33.333 20.23 20.23 36.80 2.34
2719 4934 9.987272 CATGTAAGTCCTATGTCATTGATCTTA 57.013 33.333 0.00 0.00 0.00 2.10
2720 4935 8.489489 ACATGTAAGTCCTATGTCATTGATCTT 58.511 33.333 0.00 0.82 29.55 2.40
2721 4936 7.930325 CACATGTAAGTCCTATGTCATTGATCT 59.070 37.037 0.00 0.00 33.06 2.75
2722 4937 7.307632 GCACATGTAAGTCCTATGTCATTGATC 60.308 40.741 0.00 0.00 33.06 2.92
2723 4938 6.484643 GCACATGTAAGTCCTATGTCATTGAT 59.515 38.462 0.00 0.00 33.06 2.57
2724 4939 5.817296 GCACATGTAAGTCCTATGTCATTGA 59.183 40.000 0.00 0.00 33.06 2.57
2725 4940 5.585844 TGCACATGTAAGTCCTATGTCATTG 59.414 40.000 0.00 0.00 33.06 2.82
2726 4941 5.744171 TGCACATGTAAGTCCTATGTCATT 58.256 37.500 0.00 0.00 33.06 2.57
2727 4942 5.357742 TGCACATGTAAGTCCTATGTCAT 57.642 39.130 0.00 0.00 33.06 3.06
2728 4943 4.817318 TGCACATGTAAGTCCTATGTCA 57.183 40.909 0.00 0.00 33.06 3.58
2729 4944 6.986817 AGTATTGCACATGTAAGTCCTATGTC 59.013 38.462 0.00 0.00 33.06 3.06
2730 4945 6.889198 AGTATTGCACATGTAAGTCCTATGT 58.111 36.000 0.00 0.00 35.56 2.29
2731 4946 7.792374 AAGTATTGCACATGTAAGTCCTATG 57.208 36.000 0.00 0.00 0.00 2.23
2732 4947 9.494271 CATAAGTATTGCACATGTAAGTCCTAT 57.506 33.333 0.00 0.00 0.00 2.57
2733 4948 7.931407 CCATAAGTATTGCACATGTAAGTCCTA 59.069 37.037 0.00 0.00 0.00 2.94
2734 4949 6.767902 CCATAAGTATTGCACATGTAAGTCCT 59.232 38.462 0.00 0.00 0.00 3.85
2735 4950 6.513393 GCCATAAGTATTGCACATGTAAGTCC 60.513 42.308 0.00 0.00 0.00 3.85
2736 4951 6.038161 TGCCATAAGTATTGCACATGTAAGTC 59.962 38.462 0.00 0.00 30.49 3.01
2737 4952 5.885352 TGCCATAAGTATTGCACATGTAAGT 59.115 36.000 0.00 0.00 30.49 2.24
2738 4953 6.375945 TGCCATAAGTATTGCACATGTAAG 57.624 37.500 0.00 0.00 30.49 2.34
2746 4961 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
2747 4962 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
2780 4995 9.850628 CATCCCATAATATAAGATGCAGTTTTG 57.149 33.333 0.00 0.00 0.00 2.44
2781 4996 9.812347 TCATCCCATAATATAAGATGCAGTTTT 57.188 29.630 0.00 0.00 35.41 2.43
2782 4997 9.812347 TTCATCCCATAATATAAGATGCAGTTT 57.188 29.630 0.00 0.00 35.41 2.66
2783 4998 9.458727 CTTCATCCCATAATATAAGATGCAGTT 57.541 33.333 0.00 0.00 35.41 3.16
2784 4999 8.829746 TCTTCATCCCATAATATAAGATGCAGT 58.170 33.333 0.00 0.00 35.41 4.40
2785 5000 9.676861 TTCTTCATCCCATAATATAAGATGCAG 57.323 33.333 0.00 6.14 35.41 4.41
2786 5001 9.676861 CTTCTTCATCCCATAATATAAGATGCA 57.323 33.333 0.00 0.00 35.41 3.96
2787 5002 9.678260 ACTTCTTCATCCCATAATATAAGATGC 57.322 33.333 6.75 0.00 35.41 3.91
2810 5025 7.867403 CACAATTGGTGCAAGTAAAGATTACTT 59.133 33.333 10.83 9.17 41.36 2.24
2862 5083 4.992951 GGATGGAACGTAGTGTTTGTTACT 59.007 41.667 0.00 0.00 45.00 2.24
2877 5098 0.244721 GCTGGCAAACTGGATGGAAC 59.755 55.000 0.00 0.00 0.00 3.62
2921 5148 7.872881 TGGAATACTGAGCTTAGATTACTACG 58.127 38.462 13.21 0.00 0.00 3.51
3031 5258 6.130569 TGTTTTTCTTTTGGTAGGGCTAGAA 58.869 36.000 0.00 0.00 0.00 2.10
3071 5298 7.991736 CAAATACAACAGATTTGTAAACCGTG 58.008 34.615 1.22 0.00 38.78 4.94
3104 5331 7.356540 TGGTTCTAAATACGTCAATGTGTTTG 58.643 34.615 0.00 0.00 35.27 2.93
3130 5357 8.803235 GGGAATAATGTGTTTTCTTAGAAACCT 58.197 33.333 6.93 0.00 38.45 3.50
3192 5419 6.869315 TGCGTATATAAAAATAGGCAAGCA 57.131 33.333 8.34 0.00 45.30 3.91
3209 5437 6.942532 AAATGGTCAATTAGTGATGCGTAT 57.057 33.333 0.00 0.00 38.90 3.06
3244 5472 4.210537 CCAGCAAAGCAATGAAGTTTGAAG 59.789 41.667 7.16 0.57 33.78 3.02
3245 5473 4.121317 CCAGCAAAGCAATGAAGTTTGAA 58.879 39.130 7.16 0.00 33.78 2.69
3248 5476 2.807837 GCCCAGCAAAGCAATGAAGTTT 60.808 45.455 0.00 0.00 0.00 2.66
3254 5482 1.180029 ACTAGCCCAGCAAAGCAATG 58.820 50.000 0.00 0.00 0.00 2.82
3289 5517 5.700832 CACACTGTCAATTAGTGAGCCTTTA 59.299 40.000 12.70 0.00 46.52 1.85
3293 5521 3.187227 CACACACTGTCAATTAGTGAGCC 59.813 47.826 12.70 0.00 46.52 4.70
3299 5527 4.453478 ACAGATGCACACACTGTCAATTAG 59.547 41.667 10.46 0.00 40.19 1.73
3302 5530 2.854963 ACAGATGCACACACTGTCAAT 58.145 42.857 10.46 0.00 40.19 2.57
3307 5539 3.431233 CAGACTAACAGATGCACACACTG 59.569 47.826 0.00 0.00 37.62 3.66
3308 5540 3.070159 ACAGACTAACAGATGCACACACT 59.930 43.478 0.00 0.00 0.00 3.55
3415 5647 1.146041 ACCTGCGAGCAAAGACACA 59.854 52.632 0.00 0.00 0.00 3.72
3423 5655 1.887242 GACAACACACCTGCGAGCA 60.887 57.895 0.00 0.00 0.00 4.26
3540 5772 0.753867 TACAGACTGGGCACGTTGAA 59.246 50.000 7.51 0.00 0.00 2.69
3598 5830 1.078426 CACTTGGTAAGGGAGGCGG 60.078 63.158 0.00 0.00 32.08 6.13
3606 5838 2.254546 TCACCACTGCACTTGGTAAG 57.745 50.000 13.78 4.75 46.13 2.34
3689 5921 2.590575 CCGTGCCGACAAACAGGT 60.591 61.111 0.00 0.00 0.00 4.00
3738 5970 3.343421 GCCTGGTCGCGTTCGTTT 61.343 61.111 5.77 0.00 36.96 3.60
3746 5978 4.508128 TCCGATTCGCCTGGTCGC 62.508 66.667 0.00 0.00 34.25 5.19
3902 6134 0.674895 CAGCTACTTGCCGGAGCTTT 60.675 55.000 11.67 0.00 44.08 3.51
3922 6154 5.576774 GGTTGTTCACAAAAGAAACTCCAAG 59.423 40.000 0.00 0.00 37.63 3.61
3977 6209 2.621998 ACCTATAACAGACATCCGTCCG 59.378 50.000 0.00 0.00 43.73 4.79
3979 6211 6.630444 TCTAACCTATAACAGACATCCGTC 57.370 41.667 0.00 0.00 42.95 4.79
3997 6229 0.594284 CGGACCCGCGAGAATCTAAC 60.594 60.000 8.23 0.00 0.00 2.34
4005 6237 0.249322 ATTTACATCGGACCCGCGAG 60.249 55.000 8.23 0.00 39.59 5.03
4006 6238 1.031235 TATTTACATCGGACCCGCGA 58.969 50.000 8.23 0.00 39.59 5.87
4015 6247 9.669353 CCCAAAAGATTTCTCATATTTACATCG 57.331 33.333 0.00 0.00 0.00 3.84
4112 6344 1.336755 ACAACAACAATTCTCCGTGGC 59.663 47.619 0.00 0.00 0.00 5.01
4117 6349 4.072131 TGCTCCTACAACAACAATTCTCC 58.928 43.478 0.00 0.00 0.00 3.71
4123 6355 4.650734 TGATGATGCTCCTACAACAACAA 58.349 39.130 0.00 0.00 0.00 2.83
4124 6356 4.284829 TGATGATGCTCCTACAACAACA 57.715 40.909 0.00 0.00 0.00 3.33
4125 6357 4.877823 TGATGATGATGCTCCTACAACAAC 59.122 41.667 0.00 0.00 0.00 3.32
4137 6369 3.058432 GGTACATGCACTGATGATGATGC 60.058 47.826 0.00 0.00 38.59 3.91
4166 6398 9.013229 TCTCAATCAATATGTTTGTAGCTGTTT 57.987 29.630 0.00 0.00 31.09 2.83
4182 6414 8.525316 TGCATTAAAACAGTCATCTCAATCAAT 58.475 29.630 0.00 0.00 0.00 2.57
4183 6415 7.884257 TGCATTAAAACAGTCATCTCAATCAA 58.116 30.769 0.00 0.00 0.00 2.57
4214 6449 1.620822 ACCCATCCTGTTTGTTCAGC 58.379 50.000 0.00 0.00 34.47 4.26
4215 6450 3.347216 CCTACCCATCCTGTTTGTTCAG 58.653 50.000 0.00 0.00 35.45 3.02
4216 6451 2.041081 CCCTACCCATCCTGTTTGTTCA 59.959 50.000 0.00 0.00 0.00 3.18
4217 6452 2.723273 CCCTACCCATCCTGTTTGTTC 58.277 52.381 0.00 0.00 0.00 3.18
4250 6496 5.504994 GCATTAAAACAGTCGTCTCAACCAA 60.505 40.000 0.00 0.00 0.00 3.67
4260 6506 6.110543 TCATGATCTGCATTAAAACAGTCG 57.889 37.500 0.00 0.00 34.15 4.18
4279 6525 6.245115 TGTTTGTTAGCTCATCAGTTCATG 57.755 37.500 0.00 0.00 0.00 3.07
4281 6527 6.882610 AATGTTTGTTAGCTCATCAGTTCA 57.117 33.333 0.00 0.00 0.00 3.18
4304 6550 1.394572 CATGAGCGCGACATCTTCAAA 59.605 47.619 12.10 0.00 0.00 2.69
4358 6604 3.756434 GCAAACAGGACACCAGCTAATAA 59.244 43.478 0.00 0.00 0.00 1.40
4359 6605 3.244735 TGCAAACAGGACACCAGCTAATA 60.245 43.478 0.00 0.00 0.00 0.98
4432 6682 6.481954 GTTAAGTCACTTAACCATGGTGAG 57.518 41.667 24.63 20.98 45.67 3.51
4464 6714 3.573967 AGTTAACCTCAAACCAGCCAATG 59.426 43.478 0.88 0.00 0.00 2.82
4564 6814 5.048013 GCATCATCATCATCATCATTGTGGT 60.048 40.000 0.00 0.00 0.00 4.16
4568 6818 6.681777 ACAAGCATCATCATCATCATCATTG 58.318 36.000 0.00 0.00 0.00 2.82
4627 6877 4.653888 CCCCCACCGGACCAACAC 62.654 72.222 9.46 0.00 0.00 3.32
4681 6931 1.376543 CCTGCTATGCTGTTGGTCTG 58.623 55.000 0.00 0.00 0.00 3.51
4759 7009 5.131142 ACAGGAATCACCCTCTGTAAATAGG 59.869 44.000 0.00 0.00 38.52 2.57
4770 7020 1.553690 CCACCGACAGGAATCACCCT 61.554 60.000 0.00 0.00 41.02 4.34
4772 7022 0.673644 CACCACCGACAGGAATCACC 60.674 60.000 0.00 0.00 41.02 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.