AutoCloner

Multiple sequence alignment - TraesCS5A01G129800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G129800	chr5A	100.000	3338	0	0	1	3338	291273380	291270043	0.000000e+00	6165
1	TraesCS5A01G129800	chr5A	90.612	703	66	0	2636	3338	29721583	29722285	0.000000e+00	933
2	TraesCS5A01G129800	chr5A	90.469	703	67	0	2636	3338	651687864	651687162	0.000000e+00	928
3	TraesCS5A01G129800	chr5A	90.327	703	67	1	2636	3338	386464121	386463420	0.000000e+00	920
4	TraesCS5A01G129800	chr5D	95.213	2632	86	18	1	2628	218262363	218259768	0.000000e+00	4126
5	TraesCS5A01G129800	chr5B	96.152	2027	58	7	602	2622	234904760	234902748	0.000000e+00	3293
6	TraesCS5A01G129800	chr5B	91.200	125	10	1	480	603	234904911	234904787	5.730000e-38	169
7	TraesCS5A01G129800	chr1A	96.871	703	21	1	2636	3338	249441273	249441974	0.000000e+00	1175
8	TraesCS5A01G129800	chr7A	94.294	701	40	0	2636	3336	558128025	558127325	0.000000e+00	1074
9	TraesCS5A01G129800	chr7A	93.457	703	46	0	2636	3338	696042873	696043575	0.000000e+00	1044
10	TraesCS5A01G129800	chr7A	91.013	701	63	0	2636	3336	652499172	652498472	0.000000e+00	946
11	TraesCS5A01G129800	chr7A	73.289	745	172	24	1504	2233	645039047	645039779	7.150000e-62	248
12	TraesCS5A01G129800	chr6A	92.745	703	51	0	2636	3338	158436475	158435773	0.000000e+00	1016
13	TraesCS5A01G129800	chr6A	79.975	799	157	3	1415	2211	289027066	289026269	1.330000e-163	586
14	TraesCS5A01G129800	chr3A	90.612	703	66	0	2636	3338	601516152	601515450	0.000000e+00	933
15	TraesCS5A01G129800	chrUn	100.000	401	0	0	1604	2004	478699349	478699749	0.000000e+00	741
16	TraesCS5A01G129800	chr6D	79.975	799	157	3	1415	2211	203748683	203747886	1.330000e-163	586
17	TraesCS5A01G129800	chr6B	79.850	799	158	3	1415	2211	316460103	316459306	6.210000e-162	580

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G129800	chr5A	291270043	291273380	3337	True	6165	6165	100.000	1	3338	1	chr5A.!!$R1	3337
1	TraesCS5A01G129800	chr5A	29721583	29722285	702	False	933	933	90.612	2636	3338	1	chr5A.!!$F1	702
2	TraesCS5A01G129800	chr5A	651687162	651687864	702	True	928	928	90.469	2636	3338	1	chr5A.!!$R3	702
3	TraesCS5A01G129800	chr5A	386463420	386464121	701	True	920	920	90.327	2636	3338	1	chr5A.!!$R2	702
4	TraesCS5A01G129800	chr5D	218259768	218262363	2595	True	4126	4126	95.213	1	2628	1	chr5D.!!$R1	2627
5	TraesCS5A01G129800	chr5B	234902748	234904911	2163	True	1731	3293	93.676	480	2622	2	chr5B.!!$R1	2142
6	TraesCS5A01G129800	chr1A	249441273	249441974	701	False	1175	1175	96.871	2636	3338	1	chr1A.!!$F1	702
7	TraesCS5A01G129800	chr7A	558127325	558128025	700	True	1074	1074	94.294	2636	3336	1	chr7A.!!$R1	700
8	TraesCS5A01G129800	chr7A	696042873	696043575	702	False	1044	1044	93.457	2636	3338	1	chr7A.!!$F2	702
9	TraesCS5A01G129800	chr7A	652498472	652499172	700	True	946	946	91.013	2636	3336	1	chr7A.!!$R2	700
10	TraesCS5A01G129800	chr7A	645039047	645039779	732	False	248	248	73.289	1504	2233	1	chr7A.!!$F1	729
11	TraesCS5A01G129800	chr6A	158435773	158436475	702	True	1016	1016	92.745	2636	3338	1	chr6A.!!$R1	702
12	TraesCS5A01G129800	chr6A	289026269	289027066	797	True	586	586	79.975	1415	2211	1	chr6A.!!$R2	796
13	TraesCS5A01G129800	chr3A	601515450	601516152	702	True	933	933	90.612	2636	3338	1	chr3A.!!$R1	702
14	TraesCS5A01G129800	chr6D	203747886	203748683	797	True	586	586	79.975	1415	2211	1	chr6D.!!$R1	796
15	TraesCS5A01G129800	chr6B	316459306	316460103	797	True	580	580	79.850	1415	2211	1	chr6B.!!$R1	796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
77	78	0.387239	GTGATCCTGGCGCAACAAAC	60.387	55.0	10.83	0.00	2.93	F
308	310	0.526954	CAAAGATGCCCTTCATGCGC	60.527	55.0	0.00	35.05	6.09	F
854	892	0.621082	CCAAAACCCTCCTCCTCTCC	59.379	60.0	0.00	0.00	3.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1584	1623	0.674895	GTGGCAGCTTGGACCAGTAG	60.675	60.000	0.00	33.12	2.57	R
2091	2130	2.046023	TGCGTGATGAAGGGCCAG	60.046	61.111	6.18	0.00	4.85	R
2720	2762	0.107831	CACGAAGGAGGTCAACCCAA	59.892	55.000	0.00	36.42	4.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	4.182693	CTACAACCGTTGATCACCAGTA	57.817	45.455	18.19	0.00	0.00	2.74
23	24	4.015872	ACAACCGTTGATCACCAGTATT	57.984	40.909	18.19	0.00	0.00	1.89
35	36	3.249799	TCACCAGTATTGTGCGAGTTTTG	59.750	43.478	0.00	0.00	33.71	2.44
36	37	3.003275	CACCAGTATTGTGCGAGTTTTGT	59.997	43.478	0.00	0.00	0.00	2.83
38	39	3.364964	CCAGTATTGTGCGAGTTTTGTCC	60.365	47.826	0.00	0.00	0.00	4.02
61	62	2.746904	CCAACCATCGTTTGCATAGTGA	59.253	45.455	0.00	0.00	0.00	3.41
68	69	1.331756	CGTTTGCATAGTGATCCTGGC	59.668	52.381	0.00	0.00	0.00	4.85
77	78	0.387239	GTGATCCTGGCGCAACAAAC	60.387	55.000	10.83	0.00	0.00	2.93
140	142	0.938008	GTAGGGCTGCGTAGATTTGC	59.062	55.000	4.08	0.00	0.00	3.68
143	145	0.808453	GGGCTGCGTAGATTTGCGTA	60.808	55.000	4.08	0.00	34.69	4.42
144	146	1.003851	GGCTGCGTAGATTTGCGTAA	58.996	50.000	4.08	0.00	34.69	3.18
155	157	6.845280	CGTAGATTTGCGTAAGAGTAGACTAC	59.155	42.308	4.32	4.32	43.02	2.73
156	158	6.754702	AGATTTGCGTAAGAGTAGACTACA	57.245	37.500	14.95	0.00	43.02	2.74
172	174	6.844696	AGACTACATAATTATGTTGGTGCG	57.155	37.500	30.62	16.58	43.99	5.34
221	223	9.219603	CATCATTCTTAGGTCTCTTGTAAACAA	57.780	33.333	0.00	0.00	0.00	2.83
222	224	9.793259	ATCATTCTTAGGTCTCTTGTAAACAAA	57.207	29.630	0.00	0.00	35.15	2.83
300	302	8.788238	AAAATCCTATAAATCAAAGATGCCCT	57.212	30.769	0.00	0.00	0.00	5.19
301	303	8.788238	AAATCCTATAAATCAAAGATGCCCTT	57.212	30.769	0.00	0.00	36.47	3.95
302	304	8.414629	AATCCTATAAATCAAAGATGCCCTTC	57.585	34.615	0.00	0.00	33.02	3.46
303	305	6.910191	TCCTATAAATCAAAGATGCCCTTCA	58.090	36.000	0.00	0.00	33.02	3.02
304	306	7.529555	TCCTATAAATCAAAGATGCCCTTCAT	58.470	34.615	0.00	0.00	38.32	2.57
305	307	7.449395	TCCTATAAATCAAAGATGCCCTTCATG	59.551	37.037	0.00	0.00	35.05	3.07
306	308	3.814005	AATCAAAGATGCCCTTCATGC	57.186	42.857	0.00	0.00	35.05	4.06
307	309	1.097232	TCAAAGATGCCCTTCATGCG	58.903	50.000	0.00	0.00	35.05	4.73
308	310	0.526954	CAAAGATGCCCTTCATGCGC	60.527	55.000	0.00	0.00	35.05	6.09
309	311	1.669999	AAAGATGCCCTTCATGCGCC	61.670	55.000	4.18	0.00	35.05	6.53
310	312	2.829914	GATGCCCTTCATGCGCCA	60.830	61.111	4.18	0.00	35.05	5.69
311	313	2.831742	ATGCCCTTCATGCGCCAG	60.832	61.111	4.18	0.00	33.26	4.85
349	351	4.237349	AGACGATTTTGACGGCATTTTT	57.763	36.364	0.00	0.00	41.61	1.94
353	355	5.525199	ACGATTTTGACGGCATTTTTAGTT	58.475	33.333	0.00	0.00	34.93	2.24
354	356	5.401079	ACGATTTTGACGGCATTTTTAGTTG	59.599	36.000	0.00	0.00	34.93	3.16
355	357	5.401079	CGATTTTGACGGCATTTTTAGTTGT	59.599	36.000	0.00	0.00	0.00	3.32
356	358	6.579292	CGATTTTGACGGCATTTTTAGTTGTA	59.421	34.615	0.00	0.00	0.00	2.41
357	359	7.272515	CGATTTTGACGGCATTTTTAGTTGTAT	59.727	33.333	0.00	0.00	0.00	2.29
358	360	7.630470	TTTTGACGGCATTTTTAGTTGTATG	57.370	32.000	0.00	0.00	0.00	2.39
359	361	5.950758	TGACGGCATTTTTAGTTGTATGT	57.049	34.783	0.00	0.00	0.00	2.29
362	364	4.762765	ACGGCATTTTTAGTTGTATGTGGA	59.237	37.500	0.00	0.00	0.00	4.02
363	365	5.417580	ACGGCATTTTTAGTTGTATGTGGAT	59.582	36.000	0.00	0.00	0.00	3.41
364	366	5.743398	CGGCATTTTTAGTTGTATGTGGATG	59.257	40.000	0.00	0.00	0.00	3.51
365	367	6.042143	GGCATTTTTAGTTGTATGTGGATGG	58.958	40.000	0.00	0.00	0.00	3.51
366	368	5.519927	GCATTTTTAGTTGTATGTGGATGGC	59.480	40.000	0.00	0.00	0.00	4.40
367	369	6.629128	CATTTTTAGTTGTATGTGGATGGCA	58.371	36.000	0.00	0.00	0.00	4.92
368	370	6.656632	TTTTTAGTTGTATGTGGATGGCAA	57.343	33.333	0.00	0.00	0.00	4.52
369	371	6.849085	TTTTAGTTGTATGTGGATGGCAAT	57.151	33.333	0.00	0.00	0.00	3.56
399	401	5.981915	TCAGAGCGACATGATATTTTCTGAG	59.018	40.000	0.00	0.00	36.02	3.35
403	405	6.577103	AGCGACATGATATTTTCTGAGAAGA	58.423	36.000	0.00	0.00	0.00	2.87
404	406	6.700960	AGCGACATGATATTTTCTGAGAAGAG	59.299	38.462	0.00	0.00	0.00	2.85
413	415	2.381752	TCTGAGAAGAGTCACCCACA	57.618	50.000	0.00	0.00	0.00	4.17
415	417	4.047627	TCTGAGAAGAGTCACCCACATA	57.952	45.455	0.00	0.00	0.00	2.29
428	430	6.713450	AGTCACCCACATAACGACTAAAAATT	59.287	34.615	0.00	0.00	35.24	1.82
450	452	2.644299	TCATGAAAAGAGAGGCCCTTCA	59.356	45.455	0.00	0.00	0.00	3.02
453	455	1.747924	GAAAAGAGAGGCCCTTCATGC	59.252	52.381	0.00	0.00	0.00	4.06
464	466	1.337728	CCCTTCATGCGTACTGACACA	60.338	52.381	0.00	0.00	0.00	3.72
472	474	2.485038	TGCGTACTGACACAGAACGATA	59.515	45.455	5.76	0.00	35.18	2.92
474	476	3.099362	CGTACTGACACAGAACGATAGC	58.901	50.000	5.76	0.00	35.61	2.97
505	507	2.096707	TACCCACCAACTCCTCCCGA	62.097	60.000	0.00	0.00	0.00	5.14
851	889	1.547901	CCAACCAAAACCCTCCTCCTC	60.548	57.143	0.00	0.00	0.00	3.71
852	890	1.425448	CAACCAAAACCCTCCTCCTCT	59.575	52.381	0.00	0.00	0.00	3.69
853	891	1.363246	ACCAAAACCCTCCTCCTCTC	58.637	55.000	0.00	0.00	0.00	3.20
854	892	0.621082	CCAAAACCCTCCTCCTCTCC	59.379	60.000	0.00	0.00	0.00	3.71
855	893	1.662686	CAAAACCCTCCTCCTCTCCT	58.337	55.000	0.00	0.00	0.00	3.69
878	916	3.176728	TCCACAGAGGAGCTCGTAG	57.823	57.895	9.29	7.79	43.07	3.51
1086	1125	3.997021	AGACCATCAACAACGTCAAGATC	59.003	43.478	0.00	0.00	0.00	2.75
1149	1188	1.154205	CCGTCGGCATCAACCTCATC	61.154	60.000	0.00	0.00	0.00	2.92
1242	1281	2.607457	CGAGATACGCTCCGACTCT	58.393	57.895	0.00	0.00	40.70	3.24
1500	1539	1.618837	GACCACTACCTGCTCAAGTCA	59.381	52.381	0.00	0.00	0.00	3.41
1572	1611	3.311110	ATGGTGCACCTCGACCGT	61.311	61.111	34.75	7.60	34.69	4.83
1584	1623	4.500116	GACCGTGAGCTCTCCGGC	62.500	72.222	31.95	24.00	42.87	6.13
1602	1641	1.679311	CTACTGGTCCAAGCTGCCA	59.321	57.895	0.00	0.00	0.00	4.92
2343	2385	4.003648	CCAAGATCGAAACTTAAGTGGCT	58.996	43.478	9.34	0.00	0.00	4.75
2344	2386	4.142816	CCAAGATCGAAACTTAAGTGGCTG	60.143	45.833	9.34	0.09	0.00	4.85
2345	2387	4.537135	AGATCGAAACTTAAGTGGCTGA	57.463	40.909	9.34	5.78	0.00	4.26
2352	2394	5.007724	CGAAACTTAAGTGGCTGATAATCCC	59.992	44.000	9.34	0.00	0.00	3.85
2384	2426	7.864882	CCTGAGAAAGATTTTTCAGAGGTTTTC	59.135	37.037	21.22	0.00	46.51	2.29
2425	2467	0.311790	CACAGCAAGATGCCACGTTT	59.688	50.000	0.00	0.00	46.52	3.60
2426	2468	1.032014	ACAGCAAGATGCCACGTTTT	58.968	45.000	0.00	0.00	46.52	2.43
2476	2518	3.072184	AGGAGTAATAGGATTGCTGCAGG	59.928	47.826	17.12	0.00	0.00	4.85
2622	2664	3.257375	AGACGAGTATTTGTGGTGCACTA	59.743	43.478	17.98	8.10	35.11	2.74
2624	2666	2.348666	CGAGTATTTGTGGTGCACTAGC	59.651	50.000	17.98	7.78	42.57	3.42
2628	2670	1.163420	TTTGTGGTGCACTAGCCGTG	61.163	55.000	17.98	0.00	46.58	4.94
2629	2671	2.030562	GTGGTGCACTAGCCGTGT	59.969	61.111	17.98	0.00	45.57	4.49
2630	2672	2.027625	GTGGTGCACTAGCCGTGTC	61.028	63.158	17.98	0.00	45.57	3.67
2631	2673	2.809601	GGTGCACTAGCCGTGTCG	60.810	66.667	17.98	0.00	45.57	4.35
2632	2674	3.479269	GTGCACTAGCCGTGTCGC	61.479	66.667	10.32	2.13	45.57	5.19
2633	2675	3.984749	TGCACTAGCCGTGTCGCA	61.985	61.111	5.74	0.00	45.57	5.10
2634	2676	2.509336	GCACTAGCCGTGTCGCAT	60.509	61.111	5.74	0.00	45.57	4.73
2701	2743	2.787994	CAAGTGGATCTGGAAGCTGTT	58.212	47.619	0.00	0.00	0.00	3.16
2887	2929	2.325166	GCGTTTTTGGCACGACGA	59.675	55.556	17.29	0.00	40.20	4.20
2891	2933	1.333347	CGTTTTTGGCACGACGATTGA	60.333	47.619	0.00	0.00	40.20	2.57
2954	2996	1.176527	CCATCGCTGTTGAACCCAAT	58.823	50.000	0.00	0.00	34.39	3.16
3127	3169	1.377725	CGGGCTCTGGCAAGTTCAT	60.378	57.895	0.00	0.00	40.87	2.57
3224	3266	4.403734	TCCCGCTCAAGATTAAGGTTTTT	58.596	39.130	0.00	0.00	0.00	1.94
3329	3371	2.124695	GGTGACCCGGAAGATGCC	60.125	66.667	0.73	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	2.834689	CGGACAAAACTCGCACAATAC	58.165	47.619	0.00	0.00	0.00	1.89
35	36	1.209127	CAAACGATGGTTGGCGGAC	59.791	57.895	0.00	0.00	36.25	4.79
36	37	2.622011	GCAAACGATGGTTGGCGGA	61.622	57.895	4.04	0.00	42.85	5.54
61	62	2.275380	GGGTTTGTTGCGCCAGGAT	61.275	57.895	4.18	0.00	0.00	3.24
68	69	1.275291	TCTCCTCTAGGGTTTGTTGCG	59.725	52.381	0.00	0.00	36.25	4.85
77	78	3.181456	CCAAGCTTTGATCTCCTCTAGGG	60.181	52.174	0.00	0.00	35.41	3.53
155	157	3.380004	ACACCCGCACCAACATAATTATG	59.620	43.478	21.42	21.42	39.55	1.90
156	158	3.626930	ACACCCGCACCAACATAATTAT	58.373	40.909	0.00	0.00	0.00	1.28
281	283	7.088905	GCATGAAGGGCATCTTTGATTTATAG	58.911	38.462	0.00	0.00	35.50	1.31
283	285	5.508489	CGCATGAAGGGCATCTTTGATTTAT	60.508	40.000	0.00	0.00	35.50	1.40
338	340	5.092781	CCACATACAACTAAAAATGCCGTC	58.907	41.667	0.00	0.00	0.00	4.79
349	351	6.849085	AAAATTGCCATCCACATACAACTA	57.151	33.333	0.00	0.00	0.00	2.24
388	390	6.013379	TGTGGGTGACTCTTCTCAGAAAATAT	60.013	38.462	0.00	0.00	0.00	1.28
389	391	5.306937	TGTGGGTGACTCTTCTCAGAAAATA	59.693	40.000	0.00	0.00	0.00	1.40
399	401	3.056749	AGTCGTTATGTGGGTGACTCTTC	60.057	47.826	0.00	0.00	35.04	2.87
403	405	4.877378	TTTAGTCGTTATGTGGGTGACT	57.123	40.909	0.00	0.00	42.22	3.41
404	406	5.927954	TTTTTAGTCGTTATGTGGGTGAC	57.072	39.130	0.00	0.00	0.00	3.67
428	430	3.074390	TGAAGGGCCTCTCTTTTCATGAA	59.926	43.478	6.46	3.38	0.00	2.57
440	442	0.811616	CAGTACGCATGAAGGGCCTC	60.812	60.000	6.46	0.56	0.00	4.70
450	452	1.698165	CGTTCTGTGTCAGTACGCAT	58.302	50.000	13.69	0.00	44.89	4.73
464	466	3.299340	AACGTTGACTGCTATCGTTCT	57.701	42.857	0.00	0.00	39.89	3.01
472	474	1.045407	TGGGTAGAACGTTGACTGCT	58.955	50.000	5.00	0.00	0.00	4.24
474	476	1.069513	TGGTGGGTAGAACGTTGACTG	59.930	52.381	5.00	0.00	0.00	3.51
505	507	2.355115	GGCAACCCAGGAACGGAT	59.645	61.111	0.00	0.00	0.00	4.18
634	667	1.797537	GCGCGTTGATCTGCCAAAC	60.798	57.895	8.43	0.00	0.00	2.93
662	695	9.672086	GCCTCGTATTAGAATATGATGATACTC	57.328	37.037	9.62	0.00	36.58	2.59
851	889	0.034960	TCCTCTGTGGAGACGAGGAG	60.035	60.000	3.27	0.00	42.21	3.69
852	890	2.075837	TCCTCTGTGGAGACGAGGA	58.924	57.895	3.27	3.27	43.54	3.71
853	891	4.745116	TCCTCTGTGGAGACGAGG	57.255	61.111	0.00	0.00	41.86	4.63
878	916	4.541779	CTTGCTCCGAGATGTATAGTGTC	58.458	47.826	0.00	0.00	0.00	3.67
920	959	2.514592	CGATCCTGGCGCAATGGT	60.515	61.111	10.83	0.00	0.00	3.55
973	1012	4.799473	CGCGCGTACGACCGAGAA	62.799	66.667	24.19	0.00	43.93	2.87
1500	1539	5.230942	CAGTAGTCGATCTTGTTCTTGGTT	58.769	41.667	0.00	0.00	0.00	3.67
1572	1611	1.754621	CCAGTAGCCGGAGAGCTCA	60.755	63.158	17.77	0.00	43.67	4.26
1584	1623	0.674895	GTGGCAGCTTGGACCAGTAG	60.675	60.000	0.00	0.00	33.12	2.57
2091	2130	2.046023	TGCGTGATGAAGGGCCAG	60.046	61.111	6.18	0.00	0.00	4.85
2343	2385	2.177016	TCTCAGGGACGAGGGATTATCA	59.823	50.000	0.00	0.00	33.59	2.15
2344	2386	2.877866	TCTCAGGGACGAGGGATTATC	58.122	52.381	0.00	0.00	33.59	1.75
2345	2387	3.330126	TTCTCAGGGACGAGGGATTAT	57.670	47.619	0.00	0.00	33.59	1.28
2352	2394	4.997395	TGAAAAATCTTTCTCAGGGACGAG	59.003	41.667	0.00	0.00	41.41	4.18
2426	2468	9.823647	TCCTGTATTCAATTAAAACAGCAAAAA	57.176	25.926	0.00	0.00	36.96	1.94
2446	2488	5.304614	GCAATCCTATTACTCCTGTCCTGTA	59.695	44.000	0.00	0.00	0.00	2.74
2476	2518	6.455513	GCCAAAACAACAAAGAGATTGACAAC	60.456	38.462	0.00	0.00	41.85	3.32
2568	2610	8.485578	AAACCATTCAACTGGAGGTAATTTAA	57.514	30.769	0.00	0.00	39.73	1.52
2572	2614	5.640147	TGAAACCATTCAACTGGAGGTAAT	58.360	37.500	0.00	0.00	42.47	1.89
2628	2670	2.663188	GATCCCGAGGCATGCGAC	60.663	66.667	12.44	7.14	0.00	5.19
2629	2671	2.440385	GATGATCCCGAGGCATGCGA	62.440	60.000	12.44	2.82	0.00	5.10
2630	2672	2.031516	GATGATCCCGAGGCATGCG	61.032	63.158	12.44	0.00	0.00	4.73
2631	2673	0.535780	TTGATGATCCCGAGGCATGC	60.536	55.000	9.90	9.90	0.00	4.06
2632	2674	2.195741	ATTGATGATCCCGAGGCATG	57.804	50.000	0.00	0.00	0.00	4.06
2633	2675	2.374504	AGAATTGATGATCCCGAGGCAT	59.625	45.455	0.00	0.00	0.00	4.40
2634	2676	1.770658	AGAATTGATGATCCCGAGGCA	59.229	47.619	0.00	0.00	0.00	4.75
2720	2762	0.107831	CACGAAGGAGGTCAACCCAA	59.892	55.000	0.00	0.00	36.42	4.12
2887	2929	2.715336	AGAGGATGCTGGCCTATTCAAT	59.285	45.455	3.32	0.00	35.44	2.57
2891	2933	2.423947	CCAAAGAGGATGCTGGCCTATT	60.424	50.000	3.32	0.00	38.52	1.73
2954	2996	1.002430	AGAGCCGAAGCAATCAGTTGA	59.998	47.619	0.00	0.00	43.56	3.18
2961	3003	1.373570	GCACTAAGAGCCGAAGCAAT	58.626	50.000	0.00	0.00	43.56	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.