Multiple sequence alignment - TraesCS5A01G129600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G129600 chr5A 100.000 6785 0 0 1 6785 290924028 290930812 0.000000e+00 12530.0
1 TraesCS5A01G129600 chr5A 92.060 466 36 1 6320 6785 290935487 290935951 0.000000e+00 654.0
2 TraesCS5A01G129600 chr5D 93.289 2697 155 7 4095 6785 218053697 218056373 0.000000e+00 3954.0
3 TraesCS5A01G129600 chr5D 91.214 2299 88 40 246 2488 218051072 218053312 0.000000e+00 3022.0
4 TraesCS5A01G129600 chr5D 92.476 319 23 1 3795 4112 218053323 218053641 8.020000e-124 455.0
5 TraesCS5A01G129600 chr5D 84.615 182 24 3 52 231 480982806 480982985 1.940000e-40 178.0
6 TraesCS5A01G129600 chr5D 84.444 180 25 3 52 230 316693843 316693666 2.520000e-39 174.0
7 TraesCS5A01G129600 chr5D 83.511 188 27 3 52 237 496196661 496196476 9.050000e-39 172.0
8 TraesCS5A01G129600 chr5B 91.409 2293 100 34 257 2488 234294760 234297016 0.000000e+00 3053.0
9 TraesCS5A01G129600 chr5B 90.736 1630 107 15 4958 6574 234303458 234305056 0.000000e+00 2134.0
10 TraesCS5A01G129600 chr5B 92.730 674 47 2 4285 4956 234302667 234303340 0.000000e+00 972.0
11 TraesCS5A01G129600 chr5B 90.798 326 22 5 3795 4112 234297027 234297352 4.860000e-116 429.0
12 TraesCS5A01G129600 chr5B 86.842 228 17 6 6558 6785 234307401 234307615 6.800000e-60 243.0
13 TraesCS5A01G129600 chr5B 87.421 159 11 2 4096 4245 234297410 234297568 2.520000e-39 174.0
14 TraesCS5A01G129600 chr6B 88.483 1754 184 13 4366 6108 135114513 135116259 0.000000e+00 2104.0
15 TraesCS5A01G129600 chr6B 83.520 1517 176 37 4552 6036 130828474 130829948 0.000000e+00 1349.0
16 TraesCS5A01G129600 chr6B 82.343 1212 124 45 1463 2603 135112788 135113980 0.000000e+00 970.0
17 TraesCS5A01G129600 chr6B 81.063 602 98 9 2010 2600 130823647 130824243 3.710000e-127 466.0
18 TraesCS5A01G129600 chr6B 84.960 379 31 16 1000 1354 135112380 135112756 1.800000e-95 361.0
19 TraesCS5A01G129600 chr6B 81.988 322 41 11 946 1264 130822691 130822998 2.430000e-64 257.0
20 TraesCS5A01G129600 chr6B 78.853 279 34 14 1707 1980 130823321 130823579 1.510000e-36 165.0
21 TraesCS5A01G129600 chr6B 92.424 66 4 1 255 320 135109866 135109930 7.250000e-15 93.5
22 TraesCS5A01G129600 chr6A 88.393 1749 184 14 4365 6103 77782350 77784089 0.000000e+00 2087.0
23 TraesCS5A01G129600 chr6A 82.033 1525 180 46 4552 6025 73555907 73557388 0.000000e+00 1212.0
24 TraesCS5A01G129600 chr6A 82.490 1205 127 40 1465 2600 77780720 77781909 0.000000e+00 979.0
25 TraesCS5A01G129600 chr6A 78.838 912 136 31 1720 2600 73542999 73543884 4.590000e-156 562.0
26 TraesCS5A01G129600 chr6A 83.141 433 36 22 998 1407 77780311 77780729 1.800000e-95 361.0
27 TraesCS5A01G129600 chr6A 86.207 174 21 2 52 224 574401793 574401964 1.160000e-42 185.0
28 TraesCS5A01G129600 chr6A 89.286 56 4 2 255 309 77776641 77776695 1.220000e-07 69.4
29 TraesCS5A01G129600 chr6D 86.556 1748 159 37 4366 6103 61136842 61138523 0.000000e+00 1857.0
30 TraesCS5A01G129600 chr6D 83.202 1518 175 41 4552 6033 58239086 58240559 0.000000e+00 1317.0
31 TraesCS5A01G129600 chr6D 84.335 1181 113 38 1467 2594 61135107 61136268 0.000000e+00 1090.0
32 TraesCS5A01G129600 chr6D 81.261 571 91 7 2037 2600 58235129 58235690 1.340000e-121 448.0
33 TraesCS5A01G129600 chr6D 81.944 432 44 22 998 1407 61134695 61135114 1.090000e-87 335.0
34 TraesCS5A01G129600 chr6D 82.043 323 40 12 945 1264 58234141 58234448 6.750000e-65 259.0
35 TraesCS5A01G129600 chr6D 90.667 150 12 2 1707 1856 58234760 58234907 1.490000e-46 198.0
36 TraesCS5A01G129600 chr6D 81.818 99 14 3 255 353 61104701 61104795 5.640000e-11 80.5
37 TraesCS5A01G129600 chr7D 96.382 1078 37 1 2711 3786 185759423 185760500 0.000000e+00 1773.0
38 TraesCS5A01G129600 chr7D 95.636 1100 41 4 2696 3790 144158615 144159712 0.000000e+00 1759.0
39 TraesCS5A01G129600 chr3D 96.379 1077 39 0 2711 3787 120627198 120626122 0.000000e+00 1773.0
40 TraesCS5A01G129600 chr3D 96.197 1078 41 0 2711 3788 535577116 535578193 0.000000e+00 1764.0
41 TraesCS5A01G129600 chr3D 95.155 1094 46 4 2696 3786 553040095 553039006 0.000000e+00 1720.0
42 TraesCS5A01G129600 chr3D 95.064 1094 47 4 2696 3786 553078615 553077526 0.000000e+00 1714.0
43 TraesCS5A01G129600 chr2D 95.700 1093 43 3 2696 3785 461081623 461080532 0.000000e+00 1755.0
44 TraesCS5A01G129600 chr2D 95.721 1075 46 0 2711 3785 55161060 55162134 0.000000e+00 1731.0
45 TraesCS5A01G129600 chr2D 83.784 185 26 3 52 234 326291296 326291478 9.050000e-39 172.0
46 TraesCS5A01G129600 chr1D 95.459 1079 49 0 2711 3789 355831467 355830389 0.000000e+00 1722.0
47 TraesCS5A01G129600 chr1D 84.530 181 25 2 52 231 463059435 463059257 6.990000e-40 176.0
48 TraesCS5A01G129600 chr4A 85.632 174 22 2 52 224 40732183 40732354 5.410000e-41 180.0
49 TraesCS5A01G129600 chr4A 85.057 174 23 2 52 224 40794378 40794549 2.520000e-39 174.0
50 TraesCS5A01G129600 chr4A 89.796 49 3 1 1410 1456 686939408 686939456 2.040000e-05 62.1
51 TraesCS5A01G129600 chr2A 83.417 199 27 5 53 247 515938416 515938220 5.410000e-41 180.0
52 TraesCS5A01G129600 chr4D 92.982 57 4 0 2367 2423 34592255 34592199 4.360000e-12 84.2
53 TraesCS5A01G129600 chr3B 97.368 38 1 0 1950 1987 802770630 802770593 1.580000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G129600 chr5A 290924028 290930812 6784 False 12530.000000 12530 100.000000 1 6785 1 chr5A.!!$F1 6784
1 TraesCS5A01G129600 chr5D 218051072 218056373 5301 False 2477.000000 3954 92.326333 246 6785 3 chr5D.!!$F2 6539
2 TraesCS5A01G129600 chr5B 234294760 234297568 2808 False 1218.666667 3053 89.876000 257 4245 3 chr5B.!!$F1 3988
3 TraesCS5A01G129600 chr5B 234302667 234307615 4948 False 1116.333333 2134 90.102667 4285 6785 3 chr5B.!!$F2 2500
4 TraesCS5A01G129600 chr6B 130828474 130829948 1474 False 1349.000000 1349 83.520000 4552 6036 1 chr6B.!!$F1 1484
5 TraesCS5A01G129600 chr6B 135109866 135116259 6393 False 882.125000 2104 87.052500 255 6108 4 chr6B.!!$F3 5853
6 TraesCS5A01G129600 chr6B 130822691 130824243 1552 False 296.000000 466 80.634667 946 2600 3 chr6B.!!$F2 1654
7 TraesCS5A01G129600 chr6A 73555907 73557388 1481 False 1212.000000 1212 82.033000 4552 6025 1 chr6A.!!$F2 1473
8 TraesCS5A01G129600 chr6A 77776641 77784089 7448 False 874.100000 2087 85.827500 255 6103 4 chr6A.!!$F4 5848
9 TraesCS5A01G129600 chr6A 73542999 73543884 885 False 562.000000 562 78.838000 1720 2600 1 chr6A.!!$F1 880
10 TraesCS5A01G129600 chr6D 61134695 61138523 3828 False 1094.000000 1857 84.278333 998 6103 3 chr6D.!!$F3 5105
11 TraesCS5A01G129600 chr6D 58234141 58240559 6418 False 555.500000 1317 84.293250 945 6033 4 chr6D.!!$F2 5088
12 TraesCS5A01G129600 chr7D 185759423 185760500 1077 False 1773.000000 1773 96.382000 2711 3786 1 chr7D.!!$F2 1075
13 TraesCS5A01G129600 chr7D 144158615 144159712 1097 False 1759.000000 1759 95.636000 2696 3790 1 chr7D.!!$F1 1094
14 TraesCS5A01G129600 chr3D 120626122 120627198 1076 True 1773.000000 1773 96.379000 2711 3787 1 chr3D.!!$R1 1076
15 TraesCS5A01G129600 chr3D 535577116 535578193 1077 False 1764.000000 1764 96.197000 2711 3788 1 chr3D.!!$F1 1077
16 TraesCS5A01G129600 chr3D 553039006 553040095 1089 True 1720.000000 1720 95.155000 2696 3786 1 chr3D.!!$R2 1090
17 TraesCS5A01G129600 chr3D 553077526 553078615 1089 True 1714.000000 1714 95.064000 2696 3786 1 chr3D.!!$R3 1090
18 TraesCS5A01G129600 chr2D 461080532 461081623 1091 True 1755.000000 1755 95.700000 2696 3785 1 chr2D.!!$R1 1089
19 TraesCS5A01G129600 chr2D 55161060 55162134 1074 False 1731.000000 1731 95.721000 2711 3785 1 chr2D.!!$F1 1074
20 TraesCS5A01G129600 chr1D 355830389 355831467 1078 True 1722.000000 1722 95.459000 2711 3789 1 chr1D.!!$R1 1078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.039527 GTGACACAAACCATTCCCGC 60.040 55.000 0.00 0.0 0.00 6.13 F
835 3874 0.676782 AGTTCCCGCCAGCATTACAC 60.677 55.000 0.00 0.0 0.00 2.90 F
2616 6271 0.107831 AACGTGCTTTAGGTGCTGGA 59.892 50.000 0.00 0.0 0.00 3.86 F
2617 6272 0.324943 ACGTGCTTTAGGTGCTGGAT 59.675 50.000 0.00 0.0 0.00 3.41 F
2618 6273 1.009829 CGTGCTTTAGGTGCTGGATC 58.990 55.000 0.00 0.0 0.00 3.36 F
2648 6328 1.155889 CCATGCTAAGCGTTGTCACA 58.844 50.000 0.00 0.0 0.00 3.58 F
4039 9678 1.139654 GTGCTGGCATCTACATGAGGA 59.860 52.381 0.00 0.0 30.57 3.71 F
5512 11457 1.101049 CCGTGTGGAGCAAACAAGGT 61.101 55.000 9.28 0.0 40.86 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 4824 1.657751 GCCAAAATCTCCGGCTGACC 61.658 60.000 0.00 0.0 42.78 4.02 R
2705 6386 1.003051 GGCTAGGGAGGAGGGACAA 59.997 63.158 0.00 0.0 0.00 3.18 R
3613 9134 0.038166 GATGAAGGGGTGCAAGGTGA 59.962 55.000 0.00 0.0 0.00 4.02 R
4039 9678 0.105453 ACCGAGGATAGGGCACTCAT 60.105 55.000 0.00 0.0 33.85 2.90 R
4040 9679 0.755698 GACCGAGGATAGGGCACTCA 60.756 60.000 0.00 0.0 39.60 3.41 R
4075 9716 1.765161 CGTATGTCATGTGCAGCGGG 61.765 60.000 0.00 0.0 0.00 6.13 R
5552 11497 0.248661 CGAGACGACCGCATCAAGAT 60.249 55.000 0.00 0.0 0.00 2.40 R
6391 12366 0.244450 CGCCGGTGGTGACTAAGTAA 59.756 55.000 7.26 0.0 34.74 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.069318 GGAGACGAGGACGGGCTT 61.069 66.667 0.00 0.00 44.46 4.35
37 38 2.647158 GGAGACGAGGACGGGCTTT 61.647 63.158 0.00 0.00 44.46 3.51
38 39 1.292541 GAGACGAGGACGGGCTTTT 59.707 57.895 0.00 0.00 44.46 2.27
39 40 0.320508 GAGACGAGGACGGGCTTTTT 60.321 55.000 0.00 0.00 44.46 1.94
61 62 8.958119 TTTTTCAGAGTTGCCGTTATAGATAT 57.042 30.769 0.00 0.00 0.00 1.63
66 67 9.639601 TCAGAGTTGCCGTTATAGATATATTTG 57.360 33.333 0.00 0.00 0.00 2.32
67 68 9.639601 CAGAGTTGCCGTTATAGATATATTTGA 57.360 33.333 0.00 0.00 0.00 2.69
68 69 9.862371 AGAGTTGCCGTTATAGATATATTTGAG 57.138 33.333 0.00 0.00 0.00 3.02
69 70 9.856488 GAGTTGCCGTTATAGATATATTTGAGA 57.144 33.333 0.00 0.00 0.00 3.27
110 111 8.524487 AGTCTATATGATTTGTAATCCGTCTCC 58.476 37.037 0.00 0.00 0.00 3.71
111 112 8.524487 GTCTATATGATTTGTAATCCGTCTCCT 58.476 37.037 0.00 0.00 0.00 3.69
112 113 9.749340 TCTATATGATTTGTAATCCGTCTCCTA 57.251 33.333 0.00 0.00 0.00 2.94
113 114 9.790389 CTATATGATTTGTAATCCGTCTCCTAC 57.210 37.037 0.00 0.00 0.00 3.18
114 115 5.272283 TGATTTGTAATCCGTCTCCTACC 57.728 43.478 0.00 0.00 0.00 3.18
115 116 4.960469 TGATTTGTAATCCGTCTCCTACCT 59.040 41.667 0.00 0.00 0.00 3.08
116 117 5.424252 TGATTTGTAATCCGTCTCCTACCTT 59.576 40.000 0.00 0.00 0.00 3.50
117 118 6.608405 TGATTTGTAATCCGTCTCCTACCTTA 59.392 38.462 0.00 0.00 0.00 2.69
118 119 7.289317 TGATTTGTAATCCGTCTCCTACCTTAT 59.711 37.037 0.00 0.00 0.00 1.73
119 120 6.645790 TTGTAATCCGTCTCCTACCTTATC 57.354 41.667 0.00 0.00 0.00 1.75
120 121 5.950023 TGTAATCCGTCTCCTACCTTATCT 58.050 41.667 0.00 0.00 0.00 1.98
121 122 6.002704 TGTAATCCGTCTCCTACCTTATCTC 58.997 44.000 0.00 0.00 0.00 2.75
122 123 5.327737 AATCCGTCTCCTACCTTATCTCT 57.672 43.478 0.00 0.00 0.00 3.10
123 124 6.451292 AATCCGTCTCCTACCTTATCTCTA 57.549 41.667 0.00 0.00 0.00 2.43
124 125 5.486735 TCCGTCTCCTACCTTATCTCTAG 57.513 47.826 0.00 0.00 0.00 2.43
125 126 5.153675 TCCGTCTCCTACCTTATCTCTAGA 58.846 45.833 0.00 0.00 0.00 2.43
126 127 5.605908 TCCGTCTCCTACCTTATCTCTAGAA 59.394 44.000 0.00 0.00 0.00 2.10
127 128 5.935789 CCGTCTCCTACCTTATCTCTAGAAG 59.064 48.000 0.00 0.00 0.00 2.85
128 129 6.239657 CCGTCTCCTACCTTATCTCTAGAAGA 60.240 46.154 0.00 0.00 38.72 2.87
129 130 6.872020 CGTCTCCTACCTTATCTCTAGAAGAG 59.128 46.154 0.00 0.00 43.64 2.85
140 141 4.768583 TCTCTAGAAGAGACGTCTTACCC 58.231 47.826 21.08 6.71 45.77 3.69
141 142 4.470664 TCTCTAGAAGAGACGTCTTACCCT 59.529 45.833 21.08 15.90 45.77 4.34
142 143 5.045724 TCTCTAGAAGAGACGTCTTACCCTT 60.046 44.000 21.08 17.54 45.77 3.95
143 144 5.184711 TCTAGAAGAGACGTCTTACCCTTC 58.815 45.833 25.87 25.87 43.50 3.46
144 145 3.764218 AGAAGAGACGTCTTACCCTTCA 58.236 45.455 30.69 0.00 43.50 3.02
145 146 4.150359 AGAAGAGACGTCTTACCCTTCAA 58.850 43.478 30.69 0.00 43.50 2.69
146 147 4.773149 AGAAGAGACGTCTTACCCTTCAAT 59.227 41.667 30.69 17.74 43.50 2.57
147 148 5.246429 AGAAGAGACGTCTTACCCTTCAATT 59.754 40.000 30.69 17.24 43.50 2.32
148 149 6.436532 AGAAGAGACGTCTTACCCTTCAATTA 59.563 38.462 30.69 0.00 43.50 1.40
149 150 6.793505 AGAGACGTCTTACCCTTCAATTAT 57.206 37.500 21.08 0.00 0.00 1.28
150 151 7.184067 AGAGACGTCTTACCCTTCAATTATT 57.816 36.000 21.08 0.00 0.00 1.40
151 152 7.042335 AGAGACGTCTTACCCTTCAATTATTG 58.958 38.462 21.08 0.00 0.00 1.90
152 153 6.708285 AGACGTCTTACCCTTCAATTATTGT 58.292 36.000 13.58 0.00 0.00 2.71
153 154 7.844009 AGACGTCTTACCCTTCAATTATTGTA 58.156 34.615 13.58 0.00 0.00 2.41
154 155 8.483758 AGACGTCTTACCCTTCAATTATTGTAT 58.516 33.333 13.58 0.00 0.00 2.29
155 156 9.106070 GACGTCTTACCCTTCAATTATTGTATT 57.894 33.333 8.70 0.00 0.00 1.89
156 157 9.106070 ACGTCTTACCCTTCAATTATTGTATTC 57.894 33.333 4.77 0.00 0.00 1.75
157 158 9.104965 CGTCTTACCCTTCAATTATTGTATTCA 57.895 33.333 4.77 0.00 0.00 2.57
174 175 8.515473 TTGTATTCAATATACATTCGTCCTCG 57.485 34.615 0.00 0.00 34.83 4.63
175 176 7.878036 TGTATTCAATATACATTCGTCCTCGA 58.122 34.615 0.00 0.00 35.71 4.04
176 177 8.021396 TGTATTCAATATACATTCGTCCTCGAG 58.979 37.037 5.13 5.13 37.21 4.04
177 178 5.372547 TCAATATACATTCGTCCTCGAGG 57.627 43.478 26.32 26.32 46.81 4.63
178 179 3.851976 ATATACATTCGTCCTCGAGGC 57.148 47.619 27.39 19.70 46.81 4.70
179 180 1.693627 ATACATTCGTCCTCGAGGCT 58.306 50.000 27.39 8.01 46.81 4.58
180 181 2.336945 TACATTCGTCCTCGAGGCTA 57.663 50.000 27.39 7.81 46.81 3.93
181 182 1.471119 ACATTCGTCCTCGAGGCTAA 58.529 50.000 27.39 19.14 46.81 3.09
182 183 1.822990 ACATTCGTCCTCGAGGCTAAA 59.177 47.619 27.39 18.77 46.81 1.85
183 184 2.431057 ACATTCGTCCTCGAGGCTAAAT 59.569 45.455 27.39 20.06 46.81 1.40
184 185 3.635373 ACATTCGTCCTCGAGGCTAAATA 59.365 43.478 27.39 5.25 46.81 1.40
185 186 4.098960 ACATTCGTCCTCGAGGCTAAATAA 59.901 41.667 27.39 14.02 46.81 1.40
186 187 4.931661 TTCGTCCTCGAGGCTAAATAAT 57.068 40.909 27.39 0.00 46.81 1.28
187 188 6.015688 ACATTCGTCCTCGAGGCTAAATAATA 60.016 38.462 27.39 2.73 46.81 0.98
188 189 5.368256 TCGTCCTCGAGGCTAAATAATAC 57.632 43.478 27.39 14.68 41.35 1.89
189 190 4.823442 TCGTCCTCGAGGCTAAATAATACA 59.177 41.667 27.39 1.30 41.35 2.29
190 191 5.475909 TCGTCCTCGAGGCTAAATAATACAT 59.524 40.000 27.39 0.00 41.35 2.29
191 192 5.800941 CGTCCTCGAGGCTAAATAATACATC 59.199 44.000 27.39 0.00 39.71 3.06
192 193 6.100668 GTCCTCGAGGCTAAATAATACATCC 58.899 44.000 27.39 0.00 34.44 3.51
193 194 5.778241 TCCTCGAGGCTAAATAATACATCCA 59.222 40.000 27.39 0.00 34.44 3.41
194 195 6.440647 TCCTCGAGGCTAAATAATACATCCAT 59.559 38.462 27.39 0.00 34.44 3.41
195 196 7.618117 TCCTCGAGGCTAAATAATACATCCATA 59.382 37.037 27.39 0.00 34.44 2.74
196 197 8.258007 CCTCGAGGCTAAATAATACATCCATAA 58.742 37.037 20.67 0.00 0.00 1.90
197 198 9.823647 CTCGAGGCTAAATAATACATCCATAAT 57.176 33.333 3.91 0.00 0.00 1.28
211 212 9.886132 ATACATCCATAATATTCCGTAAACTCC 57.114 33.333 0.00 0.00 0.00 3.85
212 213 7.974504 ACATCCATAATATTCCGTAAACTCCT 58.025 34.615 0.00 0.00 0.00 3.69
213 214 8.437575 ACATCCATAATATTCCGTAAACTCCTT 58.562 33.333 0.00 0.00 0.00 3.36
214 215 9.284968 CATCCATAATATTCCGTAAACTCCTTT 57.715 33.333 0.00 0.00 0.00 3.11
221 222 9.955102 AATATTCCGTAAACTCCTTTATATCCC 57.045 33.333 0.00 0.00 0.00 3.85
222 223 7.628501 ATTCCGTAAACTCCTTTATATCCCT 57.371 36.000 0.00 0.00 0.00 4.20
223 224 7.441903 TTCCGTAAACTCCTTTATATCCCTT 57.558 36.000 0.00 0.00 0.00 3.95
224 225 6.823497 TCCGTAAACTCCTTTATATCCCTTG 58.177 40.000 0.00 0.00 0.00 3.61
225 226 6.384886 TCCGTAAACTCCTTTATATCCCTTGT 59.615 38.462 0.00 0.00 0.00 3.16
226 227 6.482308 CCGTAAACTCCTTTATATCCCTTGTG 59.518 42.308 0.00 0.00 0.00 3.33
227 228 7.270047 CGTAAACTCCTTTATATCCCTTGTGA 58.730 38.462 0.00 0.00 0.00 3.58
228 229 7.224167 CGTAAACTCCTTTATATCCCTTGTGAC 59.776 40.741 0.00 0.00 0.00 3.67
229 230 6.636454 AACTCCTTTATATCCCTTGTGACA 57.364 37.500 0.00 0.00 0.00 3.58
230 231 5.990668 ACTCCTTTATATCCCTTGTGACAC 58.009 41.667 0.00 0.00 0.00 3.67
231 232 5.487488 ACTCCTTTATATCCCTTGTGACACA 59.513 40.000 3.56 3.56 0.00 3.72
232 233 6.012858 ACTCCTTTATATCCCTTGTGACACAA 60.013 38.462 19.55 19.55 36.54 3.33
233 234 6.785076 TCCTTTATATCCCTTGTGACACAAA 58.215 36.000 20.91 7.97 37.69 2.83
234 235 6.657541 TCCTTTATATCCCTTGTGACACAAAC 59.342 38.462 20.91 0.00 37.69 2.93
235 236 6.127730 CCTTTATATCCCTTGTGACACAAACC 60.128 42.308 20.91 0.00 37.69 3.27
236 237 2.746279 ATCCCTTGTGACACAAACCA 57.254 45.000 20.91 8.52 37.69 3.67
237 238 2.746279 TCCCTTGTGACACAAACCAT 57.254 45.000 20.91 0.00 37.69 3.55
238 239 3.025322 TCCCTTGTGACACAAACCATT 57.975 42.857 20.91 0.00 37.69 3.16
239 240 2.955660 TCCCTTGTGACACAAACCATTC 59.044 45.455 20.91 0.00 37.69 2.67
240 241 2.035832 CCCTTGTGACACAAACCATTCC 59.964 50.000 20.91 0.00 37.69 3.01
241 242 2.035832 CCTTGTGACACAAACCATTCCC 59.964 50.000 20.91 0.00 37.69 3.97
242 243 1.313772 TGTGACACAAACCATTCCCG 58.686 50.000 5.62 0.00 0.00 5.14
243 244 0.039527 GTGACACAAACCATTCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
244 245 1.175983 TGACACAAACCATTCCCGCC 61.176 55.000 0.00 0.00 0.00 6.13
251 252 2.178912 AACCATTCCCGCCGTATATG 57.821 50.000 0.00 0.00 0.00 1.78
343 345 7.279536 GGTTCTGGTAGTAGGTAAAGCAATAAC 59.720 40.741 0.00 0.00 0.00 1.89
388 395 7.750458 ACAGTAATAACAATGCGAATTTCTGTG 59.250 33.333 11.37 0.00 38.05 3.66
509 1466 1.066605 GGTAGCAGGAGCATTTGCATG 59.933 52.381 5.20 2.12 45.49 4.06
565 1535 4.193865 TCCGAGTCAACACATCGTATCTA 58.806 43.478 0.00 0.00 34.71 1.98
566 1536 4.034858 TCCGAGTCAACACATCGTATCTAC 59.965 45.833 0.00 0.00 34.71 2.59
568 1538 5.199000 CGAGTCAACACATCGTATCTACTC 58.801 45.833 0.00 0.00 0.00 2.59
716 2600 1.032114 GTGGACCTTGGCATACAGGC 61.032 60.000 3.59 0.00 44.50 4.85
768 2652 3.342719 TGAATAACATTTCTGCGCTCCA 58.657 40.909 9.73 0.00 0.00 3.86
775 2659 3.256631 ACATTTCTGCGCTCCATTTTTCT 59.743 39.130 9.73 0.00 0.00 2.52
835 3874 0.676782 AGTTCCCGCCAGCATTACAC 60.677 55.000 0.00 0.00 0.00 2.90
896 4246 3.432252 CCAACAATCTCTCGTGTTACACC 59.568 47.826 10.10 0.00 35.81 4.16
897 4247 4.055360 CAACAATCTCTCGTGTTACACCA 58.945 43.478 10.10 0.00 35.81 4.17
898 4248 3.914312 ACAATCTCTCGTGTTACACCAG 58.086 45.455 10.10 6.86 0.00 4.00
899 4249 2.656560 ATCTCTCGTGTTACACCAGC 57.343 50.000 10.10 0.00 0.00 4.85
930 4297 2.292845 GCATAAATTCCTGCTCCTGCTC 59.707 50.000 5.24 0.00 40.48 4.26
938 4305 4.098722 GCTCCTGCTCCTGCTGCT 62.099 66.667 0.00 0.00 40.48 4.24
939 4306 2.125065 CTCCTGCTCCTGCTGCTG 60.125 66.667 0.00 0.00 40.48 4.41
940 4307 4.405671 TCCTGCTCCTGCTGCTGC 62.406 66.667 8.89 8.89 40.48 5.25
941 4308 4.411981 CCTGCTCCTGCTGCTGCT 62.412 66.667 17.00 0.00 40.48 4.24
943 4310 3.607370 CTGCTCCTGCTGCTGCTGA 62.607 63.158 21.35 14.19 40.01 4.26
949 4316 1.003597 CTGCTGCTGCTGACTCCTT 60.004 57.895 17.00 0.00 40.01 3.36
989 4357 5.068234 TCGACAAGACTACAACCATTAGG 57.932 43.478 0.00 0.00 42.21 2.69
992 4360 2.936498 CAAGACTACAACCATTAGGCCG 59.064 50.000 0.00 0.00 39.06 6.13
1016 4435 2.952702 GCTAGATGGAGGTGGAGACTGT 60.953 54.545 0.00 0.00 0.00 3.55
1172 4594 3.075005 GAGCTACCGGACCAGGCA 61.075 66.667 9.46 0.00 33.69 4.75
1355 4824 1.172180 TCTTTGCTTGTTGCCCTCCG 61.172 55.000 0.00 0.00 42.00 4.63
1358 4827 3.056328 GCTTGTTGCCCTCCGGTC 61.056 66.667 0.00 0.00 35.15 4.79
1411 4893 8.843262 CCTGATTTGCTTTGTCTTGATGATATA 58.157 33.333 0.00 0.00 0.00 0.86
1460 4943 0.754957 CCCCGGCCTTTGCATCATTA 60.755 55.000 0.00 0.00 40.13 1.90
1475 4958 6.044046 TGCATCATTAATTTGTCTTGATGGC 58.956 36.000 12.52 7.36 42.38 4.40
1504 4994 7.359181 CGGGTGCTGAAAATTAATCTGTTTTTC 60.359 37.037 4.86 4.86 38.96 2.29
1505 4995 7.440856 GGGTGCTGAAAATTAATCTGTTTTTCA 59.559 33.333 11.47 11.47 43.39 2.69
1530 5034 3.577848 TGTTTGGATTGAATGAAGGTGGG 59.422 43.478 0.00 0.00 0.00 4.61
1666 5174 3.440415 GCTTTCCCTTTCCCCGCG 61.440 66.667 0.00 0.00 0.00 6.46
1883 5404 4.091509 CCGTACACATCAACTACTGCTTTC 59.908 45.833 0.00 0.00 0.00 2.62
1886 5407 5.424121 ACACATCAACTACTGCTTTCAAC 57.576 39.130 0.00 0.00 0.00 3.18
1928 5471 2.238144 TCTGCTGCCTTTCTATGCTCTT 59.762 45.455 0.00 0.00 0.00 2.85
2018 5641 0.383231 GCAGCTTGCACTGTTGACTT 59.617 50.000 6.23 0.00 44.26 3.01
2172 5807 5.221843 ACTGGTAAGAAAATGACTGCCACTA 60.222 40.000 0.00 0.00 0.00 2.74
2176 5811 5.633830 AAGAAAATGACTGCCACTATGTG 57.366 39.130 0.00 0.00 0.00 3.21
2184 5820 5.178061 TGACTGCCACTATGTGTATCAAAG 58.822 41.667 0.00 0.00 0.00 2.77
2324 5976 6.740944 TCGATATTGGTGAGGGAAAAGATA 57.259 37.500 0.00 0.00 0.00 1.98
2407 6059 7.225931 GGTCCAGTAAGATTATTTGCATAACGA 59.774 37.037 0.00 0.00 0.00 3.85
2480 6134 4.502962 AGAGCTGCATTAGAACTTCAGAC 58.497 43.478 1.02 0.00 0.00 3.51
2488 6142 6.147821 TGCATTAGAACTTCAGACTGCTAAAC 59.852 38.462 0.00 0.00 0.00 2.01
2534 6188 2.095263 GCAAGCCTCAGTTGCGATTAAA 60.095 45.455 0.00 0.00 40.87 1.52
2562 6216 6.259550 ACCAATAACTTTGTGCTTCTCATC 57.740 37.500 0.00 0.00 0.00 2.92
2565 6220 7.014615 ACCAATAACTTTGTGCTTCTCATCTTT 59.985 33.333 0.00 0.00 0.00 2.52
2567 6222 9.897744 CAATAACTTTGTGCTTCTCATCTTTAA 57.102 29.630 0.00 0.00 0.00 1.52
2574 6229 8.902540 TTGTGCTTCTCATCTTTAACTTCTAA 57.097 30.769 0.00 0.00 0.00 2.10
2603 6258 7.332003 TGTTTTGATCATAATGAAAACGTGC 57.668 32.000 11.74 0.00 46.01 5.34
2604 6259 7.144661 TGTTTTGATCATAATGAAAACGTGCT 58.855 30.769 11.74 0.00 46.01 4.40
2608 6263 8.894409 TTGATCATAATGAAAACGTGCTTTAG 57.106 30.769 0.00 0.00 0.00 1.85
2611 6266 6.607689 TCATAATGAAAACGTGCTTTAGGTG 58.392 36.000 0.00 0.00 0.00 4.00
2615 6270 0.951558 AAACGTGCTTTAGGTGCTGG 59.048 50.000 0.00 0.00 0.00 4.85
2616 6271 0.107831 AACGTGCTTTAGGTGCTGGA 59.892 50.000 0.00 0.00 0.00 3.86
2617 6272 0.324943 ACGTGCTTTAGGTGCTGGAT 59.675 50.000 0.00 0.00 0.00 3.41
2618 6273 1.009829 CGTGCTTTAGGTGCTGGATC 58.990 55.000 0.00 0.00 0.00 3.36
2648 6328 1.155889 CCATGCTAAGCGTTGTCACA 58.844 50.000 0.00 0.00 0.00 3.58
2659 6340 1.866601 CGTTGTCACATGCAGAGTCAA 59.133 47.619 0.00 0.00 0.00 3.18
2667 6348 6.093082 TGTCACATGCAGAGTCAATATTGAAG 59.907 38.462 19.55 10.96 39.21 3.02
2682 6363 9.625747 TCAATATTGAAGCTAACAATACCATGA 57.374 29.630 15.82 20.16 41.08 3.07
2685 6366 9.797642 ATATTGAAGCTAACAATACCATGATCA 57.202 29.630 20.75 0.00 41.08 2.92
2686 6367 8.701908 ATTGAAGCTAACAATACCATGATCAT 57.298 30.769 14.62 1.18 36.40 2.45
2687 6368 7.734924 TGAAGCTAACAATACCATGATCATC 57.265 36.000 4.86 0.00 0.00 2.92
2688 6369 7.281841 TGAAGCTAACAATACCATGATCATCA 58.718 34.615 4.86 0.00 0.00 3.07
2689 6370 7.940688 TGAAGCTAACAATACCATGATCATCAT 59.059 33.333 4.86 0.00 37.65 2.45
2690 6371 7.918536 AGCTAACAATACCATGATCATCATC 57.081 36.000 4.86 0.00 34.28 2.92
2691 6372 7.455891 AGCTAACAATACCATGATCATCATCA 58.544 34.615 4.86 0.00 43.45 3.07
2692 6373 7.940688 AGCTAACAATACCATGATCATCATCAA 59.059 33.333 4.86 0.00 42.53 2.57
2693 6374 8.737175 GCTAACAATACCATGATCATCATCAAT 58.263 33.333 4.86 0.00 42.53 2.57
2705 6386 3.202818 TCATCATCAATGCCAACCCTAGT 59.797 43.478 0.00 0.00 35.17 2.57
2708 6389 8.726596 TCATCATCAATGCCAACCCTAGTTGT 62.727 42.308 5.32 0.00 41.70 3.32
2947 7249 2.660802 GATCCGGTGGTCGTTGGT 59.339 61.111 0.00 0.00 37.11 3.67
3019 7321 2.124529 TCCACTGTTTGGCGTGCA 60.125 55.556 0.00 0.00 46.47 4.57
3211 7737 1.566298 CCTCACTTCCCCTTCCCCTG 61.566 65.000 0.00 0.00 0.00 4.45
3490 8513 2.763448 GCTCTGAAGATGGACTAGTGGT 59.237 50.000 0.00 0.00 0.00 4.16
3557 9078 1.613317 CGGACCCAGTATGTGGCTCA 61.613 60.000 0.00 0.00 46.45 4.26
3602 9123 4.017775 TGTTAGGCTTAGGTGAGAGGTCTA 60.018 45.833 0.00 0.00 0.00 2.59
3613 9134 3.707102 GTGAGAGGTCTAGGTATTTGGCT 59.293 47.826 0.00 0.00 0.00 4.75
3616 9137 3.707102 AGAGGTCTAGGTATTTGGCTCAC 59.293 47.826 0.00 0.00 0.00 3.51
3824 9459 9.965902 ATTCATGAAGGAGTTAAGAACAATAGT 57.034 29.630 14.54 0.00 0.00 2.12
3889 9525 7.612244 AGGAAAGAGAAGGTTAAAATAGGAAGC 59.388 37.037 0.00 0.00 0.00 3.86
3891 9527 9.668497 GAAAGAGAAGGTTAAAATAGGAAGCTA 57.332 33.333 0.00 0.00 33.21 3.32
3984 9623 6.116806 TCAGGTGTAAAGACAAAACTAAGCA 58.883 36.000 0.00 0.00 37.31 3.91
4039 9678 1.139654 GTGCTGGCATCTACATGAGGA 59.860 52.381 0.00 0.00 30.57 3.71
4040 9679 2.052468 TGCTGGCATCTACATGAGGAT 58.948 47.619 0.00 0.00 30.57 3.24
4060 9699 1.797211 GAGTGCCCTATCCTCGGTCG 61.797 65.000 0.00 0.00 0.00 4.79
4189 9939 9.650539 TCAAATTTATTGGTCAATAATGTGTGG 57.349 29.630 14.52 5.87 41.34 4.17
4190 9940 9.650539 CAAATTTATTGGTCAATAATGTGTGGA 57.349 29.630 14.52 2.01 41.34 4.02
4195 9945 9.693739 TTATTGGTCAATAATGTGTGGATTACT 57.306 29.630 10.94 0.00 38.08 2.24
4313 10066 5.888724 TGGTCAAAGTTACATCTTGGAAACA 59.111 36.000 0.00 0.00 39.83 2.83
4319 10072 6.594788 AGTTACATCTTGGAAACATGCATT 57.405 33.333 0.00 0.00 42.32 3.56
4378 10135 7.633193 TTTAACTGCAAAAGTTCCAGAAGTA 57.367 32.000 0.00 0.00 46.60 2.24
4428 10185 7.355101 TGTATGAGGTCATAGAACTCCTTAGT 58.645 38.462 9.39 0.00 44.98 2.24
4451 10208 7.398024 AGTCTGTGCCATTTATACTTCTCTTT 58.602 34.615 0.00 0.00 0.00 2.52
4533 10291 6.071952 GCCACATGAAAGTTTGGAAGAAGATA 60.072 38.462 0.00 0.00 0.00 1.98
4537 10295 9.793259 ACATGAAAGTTTGGAAGAAGATAGTTA 57.207 29.630 0.00 0.00 0.00 2.24
4556 10347 9.151471 GATAGTTAAGCATGAACTCTGTAACAA 57.849 33.333 0.00 0.00 33.34 2.83
4618 10409 9.618890 TGAATACATCATTAAAGAGGGAAAGAG 57.381 33.333 0.00 0.00 31.50 2.85
4620 10411 8.970859 ATACATCATTAAAGAGGGAAAGAGTG 57.029 34.615 0.00 0.00 0.00 3.51
4736 10527 4.589908 CTGGGCAGGTAGTTTGATAACTT 58.410 43.478 0.00 0.00 41.85 2.66
4771 10562 2.474359 GCTGCTGAGCACTGTTATATCG 59.526 50.000 1.40 0.00 45.46 2.92
4778 10570 6.620733 GCTGAGCACTGTTATATCGTGTTTTT 60.621 38.462 0.00 0.00 0.00 1.94
4901 10695 2.380084 TAGCTGCTGGAAGGTTTACG 57.620 50.000 13.43 0.00 0.00 3.18
4930 10724 9.533831 AGAAAATGGAGTTATCAAGGTATTGTT 57.466 29.630 0.00 0.00 37.68 2.83
4956 10751 2.706190 ACCACCATCCTATCTTAGTGCC 59.294 50.000 0.00 0.00 0.00 5.01
4959 10870 2.706190 ACCATCCTATCTTAGTGCCACC 59.294 50.000 0.00 0.00 0.00 4.61
4967 10878 6.069905 TCCTATCTTAGTGCCACCATTTACAA 60.070 38.462 0.00 0.00 0.00 2.41
4969 10880 5.699097 TCTTAGTGCCACCATTTACAAAC 57.301 39.130 0.00 0.00 0.00 2.93
5272 11214 6.182039 CACTCCTATGTGTTACCAAATGTG 57.818 41.667 0.00 0.00 33.61 3.21
5409 11351 2.715749 TGGCATCCAATACTCCACAG 57.284 50.000 0.00 0.00 0.00 3.66
5414 11356 4.009675 GCATCCAATACTCCACAGTTGAA 58.990 43.478 0.00 0.00 33.62 2.69
5415 11357 4.458989 GCATCCAATACTCCACAGTTGAAA 59.541 41.667 0.00 0.00 33.62 2.69
5434 11376 2.200373 ACTGCCTTCCAACATGGTAC 57.800 50.000 0.00 0.00 39.03 3.34
5435 11377 1.271926 ACTGCCTTCCAACATGGTACC 60.272 52.381 4.43 4.43 39.03 3.34
5512 11457 1.101049 CCGTGTGGAGCAAACAAGGT 61.101 55.000 9.28 0.00 40.86 3.50
5552 11497 1.529010 CAGGTGGCCTGCAAAGTCA 60.529 57.895 3.32 0.00 45.13 3.41
5554 11499 0.610232 AGGTGGCCTGCAAAGTCATC 60.610 55.000 3.32 0.00 29.57 2.92
5555 11500 0.610232 GGTGGCCTGCAAAGTCATCT 60.610 55.000 3.32 0.00 0.00 2.90
5556 11501 1.251251 GTGGCCTGCAAAGTCATCTT 58.749 50.000 3.32 0.00 35.14 2.40
5562 11507 2.477357 CCTGCAAAGTCATCTTGATGCG 60.477 50.000 5.78 0.00 39.11 4.73
5595 11540 3.782523 AGGATGCAATTCTTGAGAGGGTA 59.217 43.478 0.00 0.00 0.00 3.69
5609 11554 4.195416 GAGAGGGTAAATTCCAAGAGCAG 58.805 47.826 0.00 0.00 0.00 4.24
5721 11666 0.107993 AGCTCAGAATGCAAGCGCTA 60.108 50.000 12.05 0.00 39.64 4.26
5760 11715 1.758514 GAGGGCATCGACTCCTCCA 60.759 63.158 15.69 0.00 40.76 3.86
5784 11739 1.609239 GTGGAGGGTGCCATCATGA 59.391 57.895 0.00 0.00 40.68 3.07
5797 11752 0.695803 ATCATGACTCTCCCCCACCC 60.696 60.000 0.00 0.00 0.00 4.61
5850 11805 1.307647 CCTGCCCCAGCCAAGTTAT 59.692 57.895 0.00 0.00 38.69 1.89
5927 11891 6.037062 GGTGCTGCAAAAGTTAGAAATTTGTT 59.963 34.615 2.77 0.00 36.63 2.83
6142 12117 3.490348 ACCAGAAAACATGAGGGACAAG 58.510 45.455 0.00 0.00 0.00 3.16
6143 12118 3.138283 ACCAGAAAACATGAGGGACAAGA 59.862 43.478 0.00 0.00 0.00 3.02
6144 12119 3.503748 CCAGAAAACATGAGGGACAAGAC 59.496 47.826 0.00 0.00 0.00 3.01
6145 12120 4.136796 CAGAAAACATGAGGGACAAGACA 58.863 43.478 0.00 0.00 0.00 3.41
6146 12121 4.580167 CAGAAAACATGAGGGACAAGACAA 59.420 41.667 0.00 0.00 0.00 3.18
6216 12191 7.530426 ACTAAAGAGAGGTGCATTTGAAATT 57.470 32.000 0.00 0.00 0.00 1.82
6223 12198 6.819284 AGAGGTGCATTTGAAATTTTCTCAA 58.181 32.000 10.33 4.23 0.00 3.02
6258 12233 9.533253 CACTCACATTACATACAGATACATCAA 57.467 33.333 0.00 0.00 0.00 2.57
6307 12282 4.398319 AGGATGAACAAGTCAAAATCGGT 58.602 39.130 0.00 0.00 40.50 4.69
6326 12301 2.838736 GTGATATCACCGGTTCAGCAT 58.161 47.619 22.97 0.00 40.85 3.79
6355 12330 8.885494 TTTTTAAATTCATCCACCTTCAGTTG 57.115 30.769 0.00 0.00 0.00 3.16
6363 12338 1.597742 CACCTTCAGTTGACCTGGTG 58.402 55.000 2.82 11.24 41.83 4.17
6433 12408 1.556373 CCCCTGCATCCACAGTGAGA 61.556 60.000 0.62 0.00 35.83 3.27
6471 12446 3.933886 TCTTCCCTCAGATGCTTAGGAT 58.066 45.455 0.00 0.00 31.64 3.24
6574 12549 2.340210 TCAGTTGGCAGTGCAAGTTA 57.660 45.000 18.61 1.62 0.00 2.24
6577 14912 3.445450 TCAGTTGGCAGTGCAAGTTAAAA 59.555 39.130 18.61 0.00 0.00 1.52
6603 14938 1.359459 CTAAGAACGGGCAAGACGGC 61.359 60.000 0.00 0.00 40.20 5.68
6641 14976 3.507162 TCAGAAAAGTGGAATGAGGCA 57.493 42.857 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.176851 GTCCTCGTCTCCCGCGTC 62.177 72.222 4.92 0.00 36.19 5.19
19 20 2.168666 AAAAGCCCGTCCTCGTCTCC 62.169 60.000 0.00 0.00 35.01 3.71
20 21 0.320508 AAAAAGCCCGTCCTCGTCTC 60.321 55.000 0.00 0.00 35.01 3.36
21 22 1.752833 AAAAAGCCCGTCCTCGTCT 59.247 52.632 0.00 0.00 35.01 4.18
22 23 4.373771 AAAAAGCCCGTCCTCGTC 57.626 55.556 0.00 0.00 35.01 4.20
36 37 8.958119 ATATCTATAACGGCAACTCTGAAAAA 57.042 30.769 0.00 0.00 0.00 1.94
40 41 9.639601 CAAATATATCTATAACGGCAACTCTGA 57.360 33.333 0.00 0.00 0.00 3.27
41 42 9.639601 TCAAATATATCTATAACGGCAACTCTG 57.360 33.333 0.00 0.00 0.00 3.35
42 43 9.862371 CTCAAATATATCTATAACGGCAACTCT 57.138 33.333 0.00 0.00 0.00 3.24
43 44 9.856488 TCTCAAATATATCTATAACGGCAACTC 57.144 33.333 0.00 0.00 0.00 3.01
84 85 8.524487 GGAGACGGATTACAAATCATATAGACT 58.476 37.037 2.36 0.00 0.00 3.24
85 86 8.524487 AGGAGACGGATTACAAATCATATAGAC 58.476 37.037 2.36 0.00 0.00 2.59
86 87 8.651589 AGGAGACGGATTACAAATCATATAGA 57.348 34.615 2.36 0.00 0.00 1.98
87 88 9.790389 GTAGGAGACGGATTACAAATCATATAG 57.210 37.037 2.36 0.00 0.00 1.31
88 89 8.746530 GGTAGGAGACGGATTACAAATCATATA 58.253 37.037 2.36 0.00 0.00 0.86
89 90 7.455008 AGGTAGGAGACGGATTACAAATCATAT 59.545 37.037 2.36 0.00 0.00 1.78
90 91 6.781014 AGGTAGGAGACGGATTACAAATCATA 59.219 38.462 2.36 0.00 0.00 2.15
91 92 5.602978 AGGTAGGAGACGGATTACAAATCAT 59.397 40.000 2.36 0.00 0.00 2.45
92 93 4.960469 AGGTAGGAGACGGATTACAAATCA 59.040 41.667 2.36 0.00 0.00 2.57
93 94 5.532664 AGGTAGGAGACGGATTACAAATC 57.467 43.478 0.00 0.00 0.00 2.17
94 95 5.952347 AAGGTAGGAGACGGATTACAAAT 57.048 39.130 0.00 0.00 0.00 2.32
95 96 6.837568 AGATAAGGTAGGAGACGGATTACAAA 59.162 38.462 0.00 0.00 0.00 2.83
96 97 6.371278 AGATAAGGTAGGAGACGGATTACAA 58.629 40.000 0.00 0.00 0.00 2.41
97 98 5.950023 AGATAAGGTAGGAGACGGATTACA 58.050 41.667 0.00 0.00 0.00 2.41
98 99 6.240145 AGAGATAAGGTAGGAGACGGATTAC 58.760 44.000 0.00 0.00 0.00 1.89
99 100 6.451292 AGAGATAAGGTAGGAGACGGATTA 57.549 41.667 0.00 0.00 0.00 1.75
100 101 5.327737 AGAGATAAGGTAGGAGACGGATT 57.672 43.478 0.00 0.00 0.00 3.01
101 102 5.786457 TCTAGAGATAAGGTAGGAGACGGAT 59.214 44.000 0.00 0.00 0.00 4.18
102 103 5.153675 TCTAGAGATAAGGTAGGAGACGGA 58.846 45.833 0.00 0.00 0.00 4.69
103 104 5.486735 TCTAGAGATAAGGTAGGAGACGG 57.513 47.826 0.00 0.00 0.00 4.79
104 105 6.761312 TCTTCTAGAGATAAGGTAGGAGACG 58.239 44.000 0.00 0.00 0.00 4.18
105 106 7.970102 TCTCTTCTAGAGATAAGGTAGGAGAC 58.030 42.308 2.36 0.00 45.77 3.36
119 120 4.773013 AGGGTAAGACGTCTCTTCTAGAG 58.227 47.826 20.33 0.00 43.64 2.43
120 121 4.840716 AGGGTAAGACGTCTCTTCTAGA 57.159 45.455 20.33 0.00 37.87 2.43
121 122 4.942483 TGAAGGGTAAGACGTCTCTTCTAG 59.058 45.833 29.71 0.00 37.87 2.43
122 123 4.914983 TGAAGGGTAAGACGTCTCTTCTA 58.085 43.478 29.71 19.94 37.87 2.10
123 124 3.764218 TGAAGGGTAAGACGTCTCTTCT 58.236 45.455 29.71 19.07 37.87 2.85
124 125 4.516365 TTGAAGGGTAAGACGTCTCTTC 57.484 45.455 26.21 26.21 37.87 2.87
125 126 5.485209 AATTGAAGGGTAAGACGTCTCTT 57.515 39.130 20.33 17.19 40.13 2.85
126 127 6.793505 ATAATTGAAGGGTAAGACGTCTCT 57.206 37.500 20.33 8.72 0.00 3.10
127 128 6.817140 ACAATAATTGAAGGGTAAGACGTCTC 59.183 38.462 20.33 7.17 0.00 3.36
128 129 6.708285 ACAATAATTGAAGGGTAAGACGTCT 58.292 36.000 13.58 13.58 0.00 4.18
129 130 6.980051 ACAATAATTGAAGGGTAAGACGTC 57.020 37.500 7.70 7.70 0.00 4.34
130 131 9.106070 GAATACAATAATTGAAGGGTAAGACGT 57.894 33.333 0.00 0.00 0.00 4.34
131 132 9.104965 TGAATACAATAATTGAAGGGTAAGACG 57.895 33.333 0.00 0.00 0.00 4.18
148 149 9.140286 CGAGGACGAATGTATATTGAATACAAT 57.860 33.333 2.26 0.00 44.01 2.71
149 150 8.354426 TCGAGGACGAATGTATATTGAATACAA 58.646 33.333 2.26 0.00 45.74 2.41
150 151 7.878036 TCGAGGACGAATGTATATTGAATACA 58.122 34.615 0.00 0.69 45.74 2.29
166 167 4.823442 TGTATTATTTAGCCTCGAGGACGA 59.177 41.667 35.69 18.79 46.56 4.20
167 168 5.117355 TGTATTATTTAGCCTCGAGGACG 57.883 43.478 35.69 9.39 37.39 4.79
168 169 6.100668 GGATGTATTATTTAGCCTCGAGGAC 58.899 44.000 35.69 24.47 37.39 3.85
169 170 5.778241 TGGATGTATTATTTAGCCTCGAGGA 59.222 40.000 35.69 14.81 37.39 3.71
170 171 6.037786 TGGATGTATTATTTAGCCTCGAGG 57.962 41.667 27.83 27.83 38.53 4.63
171 172 9.823647 ATTATGGATGTATTATTTAGCCTCGAG 57.176 33.333 5.13 5.13 0.00 4.04
185 186 9.886132 GGAGTTTACGGAATATTATGGATGTAT 57.114 33.333 0.00 0.00 0.00 2.29
186 187 9.096823 AGGAGTTTACGGAATATTATGGATGTA 57.903 33.333 0.00 0.00 0.00 2.29
187 188 7.974504 AGGAGTTTACGGAATATTATGGATGT 58.025 34.615 0.00 0.00 0.00 3.06
188 189 8.848474 AAGGAGTTTACGGAATATTATGGATG 57.152 34.615 0.00 0.00 0.00 3.51
195 196 9.955102 GGGATATAAAGGAGTTTACGGAATATT 57.045 33.333 0.00 0.00 30.79 1.28
196 197 9.335211 AGGGATATAAAGGAGTTTACGGAATAT 57.665 33.333 0.00 0.00 30.79 1.28
197 198 8.731591 AGGGATATAAAGGAGTTTACGGAATA 57.268 34.615 0.00 0.00 30.79 1.75
198 199 7.628501 AGGGATATAAAGGAGTTTACGGAAT 57.371 36.000 0.00 0.00 30.79 3.01
199 200 7.092757 ACAAGGGATATAAAGGAGTTTACGGAA 60.093 37.037 0.00 0.00 30.79 4.30
200 201 6.384886 ACAAGGGATATAAAGGAGTTTACGGA 59.615 38.462 0.00 0.00 30.79 4.69
201 202 6.482308 CACAAGGGATATAAAGGAGTTTACGG 59.518 42.308 0.00 0.00 30.79 4.02
202 203 7.224167 GTCACAAGGGATATAAAGGAGTTTACG 59.776 40.741 0.00 0.00 30.79 3.18
203 204 8.044908 TGTCACAAGGGATATAAAGGAGTTTAC 58.955 37.037 0.00 0.00 30.79 2.01
204 205 8.044908 GTGTCACAAGGGATATAAAGGAGTTTA 58.955 37.037 0.00 0.00 32.60 2.01
205 206 6.884836 GTGTCACAAGGGATATAAAGGAGTTT 59.115 38.462 0.00 0.00 0.00 2.66
206 207 6.012858 TGTGTCACAAGGGATATAAAGGAGTT 60.013 38.462 2.31 0.00 0.00 3.01
207 208 5.487488 TGTGTCACAAGGGATATAAAGGAGT 59.513 40.000 2.31 0.00 0.00 3.85
208 209 5.989477 TGTGTCACAAGGGATATAAAGGAG 58.011 41.667 2.31 0.00 0.00 3.69
209 210 6.381498 TTGTGTCACAAGGGATATAAAGGA 57.619 37.500 14.48 0.00 32.34 3.36
210 211 6.127730 GGTTTGTGTCACAAGGGATATAAAGG 60.128 42.308 17.49 0.00 39.53 3.11
211 212 6.432783 TGGTTTGTGTCACAAGGGATATAAAG 59.567 38.462 17.49 0.00 39.53 1.85
212 213 6.307776 TGGTTTGTGTCACAAGGGATATAAA 58.692 36.000 17.49 0.00 39.53 1.40
213 214 5.882040 TGGTTTGTGTCACAAGGGATATAA 58.118 37.500 17.49 0.00 39.53 0.98
214 215 5.506730 TGGTTTGTGTCACAAGGGATATA 57.493 39.130 17.49 0.00 39.53 0.86
215 216 4.380843 TGGTTTGTGTCACAAGGGATAT 57.619 40.909 17.49 0.00 39.53 1.63
216 217 3.866703 TGGTTTGTGTCACAAGGGATA 57.133 42.857 17.49 0.86 39.53 2.59
217 218 2.746279 TGGTTTGTGTCACAAGGGAT 57.254 45.000 17.49 0.00 39.53 3.85
218 219 2.746279 ATGGTTTGTGTCACAAGGGA 57.254 45.000 17.49 6.77 39.53 4.20
219 220 2.035832 GGAATGGTTTGTGTCACAAGGG 59.964 50.000 17.49 0.00 39.53 3.95
220 221 2.035832 GGGAATGGTTTGTGTCACAAGG 59.964 50.000 17.49 0.00 39.53 3.61
221 222 2.287547 CGGGAATGGTTTGTGTCACAAG 60.288 50.000 17.49 0.53 39.53 3.16
222 223 1.678627 CGGGAATGGTTTGTGTCACAA 59.321 47.619 14.48 14.48 36.11 3.33
223 224 1.313772 CGGGAATGGTTTGTGTCACA 58.686 50.000 0.18 0.18 0.00 3.58
224 225 0.039527 GCGGGAATGGTTTGTGTCAC 60.040 55.000 0.00 0.00 0.00 3.67
225 226 1.175983 GGCGGGAATGGTTTGTGTCA 61.176 55.000 0.00 0.00 0.00 3.58
226 227 1.584495 GGCGGGAATGGTTTGTGTC 59.416 57.895 0.00 0.00 0.00 3.67
227 228 2.265182 CGGCGGGAATGGTTTGTGT 61.265 57.895 0.00 0.00 0.00 3.72
228 229 0.956410 TACGGCGGGAATGGTTTGTG 60.956 55.000 13.24 0.00 0.00 3.33
229 230 0.034863 ATACGGCGGGAATGGTTTGT 60.035 50.000 13.24 0.00 0.00 2.83
230 231 1.956297 TATACGGCGGGAATGGTTTG 58.044 50.000 13.24 0.00 0.00 2.93
231 232 2.500229 CATATACGGCGGGAATGGTTT 58.500 47.619 13.24 0.00 0.00 3.27
232 233 1.880646 GCATATACGGCGGGAATGGTT 60.881 52.381 13.24 0.00 0.00 3.67
233 234 0.321298 GCATATACGGCGGGAATGGT 60.321 55.000 13.24 0.00 0.00 3.55
234 235 0.036388 AGCATATACGGCGGGAATGG 60.036 55.000 13.24 0.00 36.08 3.16
235 236 1.066858 AGAGCATATACGGCGGGAATG 60.067 52.381 13.24 12.24 36.08 2.67
236 237 1.267121 AGAGCATATACGGCGGGAAT 58.733 50.000 13.24 4.25 36.08 3.01
237 238 1.045407 AAGAGCATATACGGCGGGAA 58.955 50.000 13.24 0.00 36.08 3.97
238 239 1.542915 GTAAGAGCATATACGGCGGGA 59.457 52.381 13.24 0.00 36.08 5.14
239 240 1.544691 AGTAAGAGCATATACGGCGGG 59.455 52.381 13.24 0.00 36.08 6.13
240 241 2.030185 ACAGTAAGAGCATATACGGCGG 60.030 50.000 13.24 0.00 36.08 6.13
241 242 2.980476 CACAGTAAGAGCATATACGGCG 59.020 50.000 4.80 4.80 36.08 6.46
242 243 3.982058 GTCACAGTAAGAGCATATACGGC 59.018 47.826 0.00 0.00 0.00 5.68
243 244 4.219802 CGTCACAGTAAGAGCATATACGG 58.780 47.826 0.00 0.00 0.00 4.02
244 245 3.664486 GCGTCACAGTAAGAGCATATACG 59.336 47.826 0.00 0.00 0.00 3.06
251 252 0.737715 CCCAGCGTCACAGTAAGAGC 60.738 60.000 0.00 0.00 0.00 4.09
343 345 4.275936 ACTGTTTGAGGGTCGAAATTCAAG 59.724 41.667 0.00 0.00 31.85 3.02
388 395 3.003480 CAAGTACTGGTAGCTTTCCTGC 58.997 50.000 0.00 0.00 0.00 4.85
509 1466 2.740055 CTCTCAGGTGCACGGTGC 60.740 66.667 25.55 25.55 45.29 5.01
565 1535 2.494918 GAGCGGGCACATACGAGT 59.505 61.111 0.00 0.00 0.00 4.18
566 1536 2.279517 GGAGCGGGCACATACGAG 60.280 66.667 0.00 0.00 0.00 4.18
568 1538 2.586079 CAGGAGCGGGCACATACG 60.586 66.667 0.00 0.00 0.00 3.06
716 2600 1.817520 TACGCGTGGCATGGGATTG 60.818 57.895 27.91 0.00 0.00 2.67
768 2652 4.570369 CCGGCAACAACAGAAAAGAAAAAT 59.430 37.500 0.00 0.00 0.00 1.82
775 2659 1.475403 TTCCCGGCAACAACAGAAAA 58.525 45.000 0.00 0.00 0.00 2.29
835 3874 8.667987 TTAATGCGCTTATTGAGTTAGTTTTG 57.332 30.769 9.73 0.00 0.00 2.44
896 4246 1.936436 TTTATGCTTGCGCTGGGCTG 61.936 55.000 17.81 11.29 44.05 4.85
897 4247 1.039233 ATTTATGCTTGCGCTGGGCT 61.039 50.000 17.81 0.00 44.05 5.19
898 4248 0.179103 AATTTATGCTTGCGCTGGGC 60.179 50.000 9.73 10.06 43.96 5.36
899 4249 1.536709 GGAATTTATGCTTGCGCTGGG 60.537 52.381 9.73 0.00 36.97 4.45
930 4297 2.436292 GGAGTCAGCAGCAGCAGG 60.436 66.667 3.17 0.00 45.49 4.85
989 4357 0.811616 CACCTCCATCTAGCAACGGC 60.812 60.000 0.00 0.00 41.61 5.68
992 4360 2.111384 TCTCCACCTCCATCTAGCAAC 58.889 52.381 0.00 0.00 0.00 4.17
1172 4594 4.421479 CGGAGTCGGCGAGCTTGT 62.421 66.667 11.20 0.00 0.00 3.16
1355 4824 1.657751 GCCAAAATCTCCGGCTGACC 61.658 60.000 0.00 0.00 42.78 4.02
1358 4827 1.982073 GACGCCAAAATCTCCGGCTG 61.982 60.000 0.00 0.00 43.95 4.85
1460 4943 3.016736 CCCGTAGCCATCAAGACAAATT 58.983 45.455 0.00 0.00 0.00 1.82
1475 4958 5.354234 ACAGATTAATTTTCAGCACCCGTAG 59.646 40.000 0.00 0.00 0.00 3.51
1504 4994 6.148150 CCACCTTCATTCAATCCAAACAAATG 59.852 38.462 0.00 0.00 0.00 2.32
1505 4995 6.232692 CCACCTTCATTCAATCCAAACAAAT 58.767 36.000 0.00 0.00 0.00 2.32
1666 5174 2.099062 CTTGCGCTGGCGATTGAC 59.901 61.111 19.31 0.98 44.10 3.18
1750 5268 2.415090 GCTCATGAACATGTGTTGGAGC 60.415 50.000 20.10 20.10 41.53 4.70
1928 5471 7.572523 ACTGATTCTTTTCACACTCATTTGA 57.427 32.000 0.00 0.00 0.00 2.69
2018 5641 6.707440 TCAAAATTTTGCAAGTAGAGGTCA 57.293 33.333 23.36 1.57 38.05 4.02
2172 5807 6.804677 TGAACAGCAAAACTTTGATACACAT 58.195 32.000 6.37 0.00 40.55 3.21
2324 5976 5.435291 CCTTGAACATTCTGGAAGCTCTAT 58.565 41.667 0.00 0.00 0.00 1.98
2480 6134 5.556355 TGAGCATTGAATGAGTTTAGCAG 57.444 39.130 9.76 0.00 0.00 4.24
2488 6142 6.675026 TGAAGAAACTTGAGCATTGAATGAG 58.325 36.000 9.76 0.00 0.00 2.90
2534 6188 8.637986 TGAGAAGCACAAAGTTATTGGTATTTT 58.362 29.630 0.00 0.00 0.00 1.82
2543 6197 9.289782 AGTTAAAGATGAGAAGCACAAAGTTAT 57.710 29.630 0.00 0.00 0.00 1.89
2586 6241 7.250569 CACCTAAAGCACGTTTTCATTATGAT 58.749 34.615 0.00 0.00 0.00 2.45
2603 6258 2.648059 CCCTTGATCCAGCACCTAAAG 58.352 52.381 0.00 0.00 0.00 1.85
2604 6259 1.340991 GCCCTTGATCCAGCACCTAAA 60.341 52.381 0.00 0.00 0.00 1.85
2608 6263 1.751927 CTGCCCTTGATCCAGCACC 60.752 63.158 0.00 0.00 0.00 5.01
2615 6270 2.012902 GCATGGTGCTGCCCTTGATC 62.013 60.000 19.79 0.00 40.96 2.92
2616 6271 2.056223 GCATGGTGCTGCCCTTGAT 61.056 57.895 19.79 1.67 40.96 2.57
2617 6272 2.677524 GCATGGTGCTGCCCTTGA 60.678 61.111 19.79 0.00 40.96 3.02
2641 6321 5.939296 TCAATATTGACTCTGCATGTGACAA 59.061 36.000 14.23 0.00 31.01 3.18
2648 6328 6.825213 TGTTAGCTTCAATATTGACTCTGCAT 59.175 34.615 17.76 11.22 36.83 3.96
2659 6340 9.797642 TGATCATGGTATTGTTAGCTTCAATAT 57.202 29.630 19.54 9.44 39.10 1.28
2667 6348 7.677454 TGATGATGATCATGGTATTGTTAGC 57.323 36.000 14.30 0.00 37.20 3.09
2677 6358 4.556233 GTTGGCATTGATGATGATCATGG 58.444 43.478 14.30 1.04 37.20 3.66
2682 6363 3.323774 AGGGTTGGCATTGATGATGAT 57.676 42.857 0.00 0.00 38.03 2.45
2683 6364 2.832643 AGGGTTGGCATTGATGATGA 57.167 45.000 0.00 0.00 38.03 2.92
2684 6365 3.559069 ACTAGGGTTGGCATTGATGATG 58.441 45.455 0.00 0.00 38.85 3.07
2685 6366 3.956199 CAACTAGGGTTGGCATTGATGAT 59.044 43.478 0.00 0.00 46.37 2.45
2686 6367 3.355378 CAACTAGGGTTGGCATTGATGA 58.645 45.455 0.00 0.00 46.37 2.92
2687 6368 3.788333 CAACTAGGGTTGGCATTGATG 57.212 47.619 0.00 0.00 46.37 3.07
2705 6386 1.003051 GGCTAGGGAGGAGGGACAA 59.997 63.158 0.00 0.00 0.00 3.18
2708 6389 4.541648 GCGGCTAGGGAGGAGGGA 62.542 72.222 0.00 0.00 0.00 4.20
3005 7307 3.595758 GCCTGCACGCCAAACAGT 61.596 61.111 0.00 0.00 0.00 3.55
3211 7737 2.184579 CTTTCGCCCGAGAGACCC 59.815 66.667 2.42 0.00 0.00 4.46
3490 8513 1.245376 TGTGTCGTCGCCACCATCTA 61.245 55.000 3.68 0.00 31.71 1.98
3602 9123 1.075374 TGCAAGGTGAGCCAAATACCT 59.925 47.619 0.00 0.00 46.38 3.08
3613 9134 0.038166 GATGAAGGGGTGCAAGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
3616 9137 2.734755 TATGATGAAGGGGTGCAAGG 57.265 50.000 0.00 0.00 0.00 3.61
3790 9425 9.117183 TCTTAACTCCTTCATGAATTGATGATG 57.883 33.333 8.96 10.55 33.34 3.07
3791 9426 9.690913 TTCTTAACTCCTTCATGAATTGATGAT 57.309 29.630 8.96 0.00 33.34 2.45
3792 9427 8.950210 GTTCTTAACTCCTTCATGAATTGATGA 58.050 33.333 8.96 3.21 33.34 2.92
3793 9428 8.733458 TGTTCTTAACTCCTTCATGAATTGATG 58.267 33.333 8.96 0.00 33.34 3.07
3889 9525 4.437682 TCCCAGCAAACCCTATCAATAG 57.562 45.455 0.00 0.00 0.00 1.73
3891 9527 3.756082 TTCCCAGCAAACCCTATCAAT 57.244 42.857 0.00 0.00 0.00 2.57
3984 9623 2.038557 TCGAAGTTAGGCAGGCTCTTTT 59.961 45.455 0.00 0.00 0.00 2.27
4039 9678 0.105453 ACCGAGGATAGGGCACTCAT 60.105 55.000 0.00 0.00 33.85 2.90
4040 9679 0.755698 GACCGAGGATAGGGCACTCA 60.756 60.000 0.00 0.00 39.60 3.41
4075 9716 1.765161 CGTATGTCATGTGCAGCGGG 61.765 60.000 0.00 0.00 0.00 6.13
4149 9881 8.394877 CCAATAAATTTGAGAAGCGTATGTGTA 58.605 33.333 0.00 0.00 0.00 2.90
4215 9965 7.910584 AAAAGTGCTTTTAGGATGAATCCAAT 58.089 30.769 11.85 0.00 42.21 3.16
4313 10066 7.520798 TCTGTCCAGAAATATAAGGAATGCAT 58.479 34.615 0.00 0.00 33.91 3.96
4319 10072 8.577296 CGATAACTCTGTCCAGAAATATAAGGA 58.423 37.037 0.00 0.00 36.94 3.36
4403 10160 7.355101 ACTAAGGAGTTCTATGACCTCATACA 58.645 38.462 0.00 0.00 33.08 2.29
4451 10208 6.319911 TGTGTTGTGGTTAAGATGAACAATCA 59.680 34.615 0.00 0.00 40.57 2.57
4533 10291 7.986085 ATTGTTACAGAGTTCATGCTTAACT 57.014 32.000 0.00 0.00 39.84 2.24
4537 10295 6.488006 AGACAATTGTTACAGAGTTCATGCTT 59.512 34.615 13.36 0.00 0.00 3.91
4556 10347 6.088016 TCTTGCTGCAAAACATTAGACAAT 57.912 33.333 16.74 0.00 0.00 2.71
4618 10409 5.112686 GTTCTCCAGATATCTTGTGGACAC 58.887 45.833 1.33 2.57 35.36 3.67
4620 10411 4.162320 TGGTTCTCCAGATATCTTGTGGAC 59.838 45.833 1.33 5.67 39.03 4.02
4736 10527 5.883661 GCTCAGCAGCAATAAAATTCTGTA 58.116 37.500 0.00 0.00 46.06 2.74
4877 10671 4.576330 AAACCTTCCAGCAGCTATAGTT 57.424 40.909 0.00 0.00 0.00 2.24
4901 10695 4.706962 ACCTTGATAACTCCATTTTCTGCC 59.293 41.667 0.00 0.00 0.00 4.85
4930 10724 5.363868 CACTAAGATAGGATGGTGGTTCTCA 59.636 44.000 0.00 0.00 0.00 3.27
4956 10751 9.528018 AAGTGTAAAATCTGTTTGTAAATGGTG 57.472 29.630 0.00 0.00 0.00 4.17
4959 10870 9.528018 ACCAAGTGTAAAATCTGTTTGTAAATG 57.472 29.630 0.00 0.00 0.00 2.32
4967 10878 7.781056 ACAATTCACCAAGTGTAAAATCTGTT 58.219 30.769 0.00 0.00 39.03 3.16
4969 10880 9.180678 GTAACAATTCACCAAGTGTAAAATCTG 57.819 33.333 0.00 0.00 39.90 2.90
5053 10990 4.161565 ACAATGCATCCAATGAGAAAGCAT 59.838 37.500 0.00 0.00 40.89 3.79
5385 11327 3.504906 GTGGAGTATTGGATGCCATCATG 59.495 47.826 7.06 0.00 31.53 3.07
5409 11351 3.383761 CATGTTGGAAGGCAGTTTCAAC 58.616 45.455 13.04 13.04 0.00 3.18
5414 11356 2.514803 GTACCATGTTGGAAGGCAGTT 58.485 47.619 0.00 0.00 40.96 3.16
5415 11357 1.271926 GGTACCATGTTGGAAGGCAGT 60.272 52.381 7.15 0.00 40.96 4.40
5434 11376 1.747709 CCAGATGCCTTGTCTTCTGG 58.252 55.000 10.10 10.10 45.68 3.86
5435 11377 1.747709 CCCAGATGCCTTGTCTTCTG 58.252 55.000 0.00 0.00 37.74 3.02
5461 11403 0.315251 TCGTCAGCTTCAGTCTGTGG 59.685 55.000 0.00 0.00 33.48 4.17
5512 11457 4.534500 TGATAAGGTTCTTTGGTAGGCTGA 59.466 41.667 0.00 0.00 0.00 4.26
5552 11497 0.248661 CGAGACGACCGCATCAAGAT 60.249 55.000 0.00 0.00 0.00 2.40
5554 11499 3.680525 CGAGACGACCGCATCAAG 58.319 61.111 0.00 0.00 0.00 3.02
5562 11507 2.583593 GCATCCTGCGAGACGACC 60.584 66.667 0.00 0.00 31.71 4.79
5595 11540 5.279657 GGATTTTGACCTGCTCTTGGAATTT 60.280 40.000 0.00 0.00 0.00 1.82
5609 11554 3.134458 CCGAGCTGATAGGATTTTGACC 58.866 50.000 0.00 0.00 0.00 4.02
5682 11627 4.156922 AGCTCTATCGGATAATCCTTCACG 59.843 45.833 0.00 0.00 33.30 4.35
5721 11666 2.755655 CGGTGAGAGTTGTACCATCTCT 59.244 50.000 15.83 13.11 41.47 3.10
5850 11805 3.411446 CTGTTGCCCATACTCAAGTTCA 58.589 45.455 0.00 0.00 0.00 3.18
5927 11891 4.693566 CGGAACATAGGTAAAACAGCAAGA 59.306 41.667 0.00 0.00 0.00 3.02
6142 12117 4.458989 TGATCATGGTTTGTAGGCTTTGTC 59.541 41.667 0.00 0.00 0.00 3.18
6143 12118 4.406456 TGATCATGGTTTGTAGGCTTTGT 58.594 39.130 0.00 0.00 0.00 2.83
6144 12119 5.389859 TTGATCATGGTTTGTAGGCTTTG 57.610 39.130 0.00 0.00 0.00 2.77
6145 12120 6.610075 ATTTGATCATGGTTTGTAGGCTTT 57.390 33.333 0.00 0.00 0.00 3.51
6146 12121 6.211184 TGAATTTGATCATGGTTTGTAGGCTT 59.789 34.615 0.00 0.00 0.00 4.35
6216 12191 8.908786 AATGTGAGTGAGAATACTTTGAGAAA 57.091 30.769 0.00 0.00 0.00 2.52
6223 12198 9.809096 CTGTATGTAATGTGAGTGAGAATACTT 57.191 33.333 0.00 0.00 0.00 2.24
6229 12204 8.519799 TGTATCTGTATGTAATGTGAGTGAGA 57.480 34.615 0.00 0.00 0.00 3.27
6307 12282 4.100963 AGTTATGCTGAACCGGTGATATCA 59.899 41.667 8.52 7.28 0.00 2.15
6355 12330 7.224753 CAGTATATTCACACATTACACCAGGTC 59.775 40.741 0.00 0.00 0.00 3.85
6391 12366 0.244450 CGCCGGTGGTGACTAAGTAA 59.756 55.000 7.26 0.00 34.74 2.24
6433 12408 4.192317 GGAAGAACAAGTCACAGAGTGTT 58.808 43.478 0.00 0.00 34.79 3.32
6441 12416 3.753294 TCTGAGGGAAGAACAAGTCAC 57.247 47.619 0.00 0.00 0.00 3.67
6446 12421 3.795688 AAGCATCTGAGGGAAGAACAA 57.204 42.857 0.00 0.00 0.00 2.83
6471 12446 2.924421 TGCAACCACATGTGTCTGTAA 58.076 42.857 23.79 10.40 0.00 2.41
6577 14912 4.215613 GTCTTGCCCGTTCTTAGATTGTTT 59.784 41.667 0.00 0.00 0.00 2.83
6580 14915 2.348666 CGTCTTGCCCGTTCTTAGATTG 59.651 50.000 0.00 0.00 0.00 2.67
6630 14965 6.604171 ACTTGATATATGTTGCCTCATTCCA 58.396 36.000 0.00 0.00 0.00 3.53
6749 15084 4.518970 TGTAAAGTGGGAGAATTTGCTCAC 59.481 41.667 3.94 3.94 38.81 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.