Multiple sequence alignment - TraesCS5A01G129500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G129500 chr5A 100.000 3527 0 0 1 3527 290546998 290550524 0.000000e+00 6514.0
1 TraesCS5A01G129500 chr5A 96.296 324 12 0 3114 3437 510187556 510187879 1.860000e-147 532.0
2 TraesCS5A01G129500 chr5A 96.541 318 10 1 3119 3436 673688543 673688859 3.120000e-145 525.0
3 TraesCS5A01G129500 chr5A 94.462 325 16 2 3115 3439 83274096 83273774 1.890000e-137 499.0
4 TraesCS5A01G129500 chr5D 94.091 2826 110 26 65 2866 217754098 217756890 0.000000e+00 4241.0
5 TraesCS5A01G129500 chr5D 92.000 225 11 4 2904 3125 217757098 217757318 3.420000e-80 309.0
6 TraesCS5A01G129500 chr5B 95.492 2551 89 9 306 2852 233921594 233924122 0.000000e+00 4050.0
7 TraesCS5A01G129500 chr5B 92.086 278 17 4 2850 3125 233924197 233924471 1.540000e-103 387.0
8 TraesCS5A01G129500 chr2A 89.324 1583 142 13 959 2530 749448110 749446544 0.000000e+00 1962.0
9 TraesCS5A01G129500 chr2A 90.007 1511 135 5 1000 2504 749523741 749525241 0.000000e+00 1940.0
10 TraesCS5A01G129500 chr2A 97.125 313 9 0 3124 3436 723523031 723523343 2.410000e-146 529.0
11 TraesCS5A01G129500 chr2D 89.495 1504 142 7 1000 2497 618532333 618530840 0.000000e+00 1888.0
12 TraesCS5A01G129500 chr2D 91.094 1325 109 5 1188 2512 618645451 618646766 0.000000e+00 1784.0
13 TraesCS5A01G129500 chr2B 89.467 1500 140 7 1000 2492 755038359 755036871 0.000000e+00 1879.0
14 TraesCS5A01G129500 chr2B 90.269 966 76 7 1000 1958 755054585 755055539 0.000000e+00 1247.0
15 TraesCS5A01G129500 chr2B 89.522 544 57 0 1949 2492 755056005 755056548 0.000000e+00 689.0
16 TraesCS5A01G129500 chr2B 95.666 323 13 1 3122 3443 694533647 694533969 5.220000e-143 518.0
17 TraesCS5A01G129500 chr4D 83.190 1511 215 21 1012 2498 115543837 115542342 0.000000e+00 1347.0
18 TraesCS5A01G129500 chr4A 82.493 1508 231 18 1012 2498 461353990 461355485 0.000000e+00 1291.0
19 TraesCS5A01G129500 chr6A 95.950 321 13 0 3119 3439 566423831 566424151 4.030000e-144 521.0
20 TraesCS5A01G129500 chr3A 95.899 317 13 0 3122 3438 584093668 584093352 6.750000e-142 514.0
21 TraesCS5A01G129500 chr7A 95.584 317 14 0 3122 3438 110348253 110348569 3.140000e-140 508.0
22 TraesCS5A01G129500 chr3B 94.462 325 17 1 3118 3442 559536451 559536774 1.890000e-137 499.0
23 TraesCS5A01G129500 chr3B 97.917 48 1 0 170 217 508697493 508697540 2.260000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G129500 chr5A 290546998 290550524 3526 False 6514.0 6514 100.0000 1 3527 1 chr5A.!!$F1 3526
1 TraesCS5A01G129500 chr5D 217754098 217757318 3220 False 2275.0 4241 93.0455 65 3125 2 chr5D.!!$F1 3060
2 TraesCS5A01G129500 chr5B 233921594 233924471 2877 False 2218.5 4050 93.7890 306 3125 2 chr5B.!!$F1 2819
3 TraesCS5A01G129500 chr2A 749446544 749448110 1566 True 1962.0 1962 89.3240 959 2530 1 chr2A.!!$R1 1571
4 TraesCS5A01G129500 chr2A 749523741 749525241 1500 False 1940.0 1940 90.0070 1000 2504 1 chr2A.!!$F2 1504
5 TraesCS5A01G129500 chr2D 618530840 618532333 1493 True 1888.0 1888 89.4950 1000 2497 1 chr2D.!!$R1 1497
6 TraesCS5A01G129500 chr2D 618645451 618646766 1315 False 1784.0 1784 91.0940 1188 2512 1 chr2D.!!$F1 1324
7 TraesCS5A01G129500 chr2B 755036871 755038359 1488 True 1879.0 1879 89.4670 1000 2492 1 chr2B.!!$R1 1492
8 TraesCS5A01G129500 chr2B 755054585 755056548 1963 False 968.0 1247 89.8955 1000 2492 2 chr2B.!!$F2 1492
9 TraesCS5A01G129500 chr4D 115542342 115543837 1495 True 1347.0 1347 83.1900 1012 2498 1 chr4D.!!$R1 1486
10 TraesCS5A01G129500 chr4A 461353990 461355485 1495 False 1291.0 1291 82.4930 1012 2498 1 chr4A.!!$F1 1486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.747255 TGTCGCTTCCCTCTATCTGC 59.253 55.000 0.00 0.0 0.0 4.26 F
723 744 1.004560 CAGCTGTCATCCACCGTGT 60.005 57.895 5.25 0.0 0.0 4.49 F
1182 1209 0.471211 AGGACTTCACCAACCTCGGA 60.471 55.000 0.00 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1209 2.989824 AGGTGCGCGTACCAGTCT 60.990 61.111 40.96 22.75 43.37 3.24 R
2103 2623 0.601046 CAGCGCTGAACTTGGAGTCA 60.601 55.000 33.66 0.00 0.00 3.41 R
2541 3064 1.382522 ACATTGTTAGCGCATCCCAG 58.617 50.000 11.47 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.791383 CTGTCGCTTCCCTCTATCTG 57.209 55.000 0.00 0.00 0.00 2.90
20 21 0.747255 TGTCGCTTCCCTCTATCTGC 59.253 55.000 0.00 0.00 0.00 4.26
21 22 1.036707 GTCGCTTCCCTCTATCTGCT 58.963 55.000 0.00 0.00 0.00 4.24
22 23 1.410882 GTCGCTTCCCTCTATCTGCTT 59.589 52.381 0.00 0.00 0.00 3.91
23 24 2.111384 TCGCTTCCCTCTATCTGCTTT 58.889 47.619 0.00 0.00 0.00 3.51
24 25 2.159043 TCGCTTCCCTCTATCTGCTTTG 60.159 50.000 0.00 0.00 0.00 2.77
25 26 2.159043 CGCTTCCCTCTATCTGCTTTGA 60.159 50.000 0.00 0.00 0.00 2.69
26 27 3.494048 CGCTTCCCTCTATCTGCTTTGAT 60.494 47.826 0.00 0.00 0.00 2.57
27 28 4.459330 GCTTCCCTCTATCTGCTTTGATT 58.541 43.478 0.00 0.00 0.00 2.57
28 29 4.886489 GCTTCCCTCTATCTGCTTTGATTT 59.114 41.667 0.00 0.00 0.00 2.17
29 30 5.359292 GCTTCCCTCTATCTGCTTTGATTTT 59.641 40.000 0.00 0.00 0.00 1.82
30 31 6.459435 GCTTCCCTCTATCTGCTTTGATTTTC 60.459 42.308 0.00 0.00 0.00 2.29
31 32 5.440610 TCCCTCTATCTGCTTTGATTTTCC 58.559 41.667 0.00 0.00 0.00 3.13
32 33 4.582240 CCCTCTATCTGCTTTGATTTTCCC 59.418 45.833 0.00 0.00 0.00 3.97
33 34 4.582240 CCTCTATCTGCTTTGATTTTCCCC 59.418 45.833 0.00 0.00 0.00 4.81
34 35 5.444176 CTCTATCTGCTTTGATTTTCCCCT 58.556 41.667 0.00 0.00 0.00 4.79
35 36 5.440610 TCTATCTGCTTTGATTTTCCCCTC 58.559 41.667 0.00 0.00 0.00 4.30
36 37 2.807676 TCTGCTTTGATTTTCCCCTCC 58.192 47.619 0.00 0.00 0.00 4.30
37 38 1.827344 CTGCTTTGATTTTCCCCTCCC 59.173 52.381 0.00 0.00 0.00 4.30
38 39 1.148867 TGCTTTGATTTTCCCCTCCCA 59.851 47.619 0.00 0.00 0.00 4.37
39 40 2.225598 TGCTTTGATTTTCCCCTCCCAT 60.226 45.455 0.00 0.00 0.00 4.00
40 41 2.432146 GCTTTGATTTTCCCCTCCCATC 59.568 50.000 0.00 0.00 0.00 3.51
41 42 3.711863 CTTTGATTTTCCCCTCCCATCA 58.288 45.455 0.00 0.00 0.00 3.07
42 43 4.292643 CTTTGATTTTCCCCTCCCATCAT 58.707 43.478 0.00 0.00 0.00 2.45
43 44 4.351110 TTGATTTTCCCCTCCCATCATT 57.649 40.909 0.00 0.00 0.00 2.57
44 45 3.914771 TGATTTTCCCCTCCCATCATTC 58.085 45.455 0.00 0.00 0.00 2.67
45 46 3.271755 TGATTTTCCCCTCCCATCATTCA 59.728 43.478 0.00 0.00 0.00 2.57
46 47 4.078454 TGATTTTCCCCTCCCATCATTCAT 60.078 41.667 0.00 0.00 0.00 2.57
47 48 4.351110 TTTTCCCCTCCCATCATTCATT 57.649 40.909 0.00 0.00 0.00 2.57
48 49 4.351110 TTTCCCCTCCCATCATTCATTT 57.649 40.909 0.00 0.00 0.00 2.32
49 50 3.600448 TCCCCTCCCATCATTCATTTC 57.400 47.619 0.00 0.00 0.00 2.17
50 51 3.133665 TCCCCTCCCATCATTCATTTCT 58.866 45.455 0.00 0.00 0.00 2.52
51 52 3.533068 TCCCCTCCCATCATTCATTTCTT 59.467 43.478 0.00 0.00 0.00 2.52
52 53 4.016292 TCCCCTCCCATCATTCATTTCTTT 60.016 41.667 0.00 0.00 0.00 2.52
53 54 4.343239 CCCCTCCCATCATTCATTTCTTTC 59.657 45.833 0.00 0.00 0.00 2.62
54 55 5.206587 CCCTCCCATCATTCATTTCTTTCT 58.793 41.667 0.00 0.00 0.00 2.52
55 56 6.367983 CCCTCCCATCATTCATTTCTTTCTA 58.632 40.000 0.00 0.00 0.00 2.10
56 57 6.835488 CCCTCCCATCATTCATTTCTTTCTAA 59.165 38.462 0.00 0.00 0.00 2.10
57 58 7.342799 CCCTCCCATCATTCATTTCTTTCTAAA 59.657 37.037 0.00 0.00 0.00 1.85
58 59 8.921205 CCTCCCATCATTCATTTCTTTCTAAAT 58.079 33.333 0.00 0.00 0.00 1.40
82 83 8.879427 ATAATTACCTAAAAGCCAGTTCAACT 57.121 30.769 0.00 0.00 0.00 3.16
99 100 8.709386 AGTTCAACTGATAACTGTCACATATC 57.291 34.615 0.00 0.00 34.70 1.63
130 131 8.511604 ACTACCAAATGAAACCATATCTCTTG 57.488 34.615 0.00 0.00 0.00 3.02
180 181 8.162746 TCACCAGATATATACCATTGATTGCAA 58.837 33.333 0.00 0.00 38.60 4.08
221 222 1.875963 CAAGCCGCTTGGTTACCAG 59.124 57.895 23.17 0.30 37.77 4.00
367 386 6.212235 ACACAATGAAAAATCGCATAACACA 58.788 32.000 0.00 0.00 0.00 3.72
446 466 6.238130 GCCGGAGTCAATTTCTACAAAGATAC 60.238 42.308 5.05 0.00 0.00 2.24
449 469 7.759886 CGGAGTCAATTTCTACAAAGATACTGA 59.240 37.037 0.00 0.00 0.00 3.41
454 474 9.778741 TCAATTTCTACAAAGATACTGAACACT 57.221 29.630 0.00 0.00 0.00 3.55
475 496 8.102484 ACACTATTCAGGAACATTAATACCCT 57.898 34.615 0.00 0.00 0.00 4.34
524 545 6.056236 AGAAACAGAAGTCCCAGAAAACTAC 58.944 40.000 0.00 0.00 0.00 2.73
545 566 4.184629 ACCTCGTGATCAGCATCTAAAAC 58.815 43.478 0.00 0.00 0.00 2.43
579 600 3.350833 AGCAGCCCTTTCTGATTTAGTG 58.649 45.455 0.00 0.00 36.19 2.74
607 628 1.225368 CACGATCGAAACGTTGCGG 60.225 57.895 27.59 14.68 42.07 5.69
608 629 2.377310 ACGATCGAAACGTTGCGGG 61.377 57.895 27.59 18.78 41.18 6.13
609 630 2.089936 CGATCGAAACGTTGCGGGA 61.090 57.895 27.59 10.75 0.00 5.14
631 652 5.064198 GGACCGAAAAATGATATGAACACGA 59.936 40.000 0.00 0.00 0.00 4.35
667 688 8.976986 AAAAAGATTGTCTTAATCATGTGCTC 57.023 30.769 0.00 0.00 35.27 4.26
678 699 2.660064 ATGTGCTCGAGGGACCCAC 61.660 63.158 14.60 13.32 35.29 4.61
723 744 1.004560 CAGCTGTCATCCACCGTGT 60.005 57.895 5.25 0.00 0.00 4.49
729 750 2.672874 CTGTCATCCACCGTGTTACATG 59.327 50.000 0.00 0.00 0.00 3.21
732 753 3.370978 GTCATCCACCGTGTTACATGAAG 59.629 47.826 6.09 0.00 0.00 3.02
814 835 3.056749 ACGTTGGGTTTGTTTAAAGCACA 60.057 39.130 0.00 0.00 44.09 4.57
832 853 3.254014 AAGCGCACGTGTTCCATGC 62.254 57.895 18.38 11.47 35.96 4.06
895 916 2.675423 TCGACTCTCCCCACACCG 60.675 66.667 0.00 0.00 0.00 4.94
1182 1209 0.471211 AGGACTTCACCAACCTCGGA 60.471 55.000 0.00 0.00 0.00 4.55
1495 1522 3.706373 GCCTCTTGCCCGTCCTCA 61.706 66.667 0.00 0.00 0.00 3.86
1986 2488 3.876589 GAACCCTCAAGTCGCGGCA 62.877 63.158 15.58 0.00 0.00 5.69
2103 2623 4.572571 TTCCCGCCCGTGCAGTTT 62.573 61.111 0.00 0.00 37.32 2.66
2421 2941 2.586357 GTCGGAGAGAATGGCCGC 60.586 66.667 0.00 0.00 44.45 6.53
2451 2971 4.413928 CCAAGATTTGTGGCGGGA 57.586 55.556 0.00 0.00 0.00 5.14
2566 3089 4.695455 GGGATGCGCTAACAATGTACATAT 59.305 41.667 9.21 1.45 0.00 1.78
2567 3090 5.872617 GGGATGCGCTAACAATGTACATATA 59.127 40.000 9.21 2.59 0.00 0.86
2568 3091 6.538742 GGGATGCGCTAACAATGTACATATAT 59.461 38.462 9.21 0.71 0.00 0.86
2569 3092 7.709182 GGGATGCGCTAACAATGTACATATATA 59.291 37.037 9.21 1.89 0.00 0.86
2570 3093 8.755941 GGATGCGCTAACAATGTACATATATAG 58.244 37.037 9.21 11.96 0.00 1.31
2571 3094 9.516314 GATGCGCTAACAATGTACATATATAGA 57.484 33.333 9.21 0.00 0.00 1.98
2572 3095 8.911247 TGCGCTAACAATGTACATATATAGAG 57.089 34.615 9.21 13.17 0.00 2.43
2573 3096 8.736244 TGCGCTAACAATGTACATATATAGAGA 58.264 33.333 19.89 9.40 0.00 3.10
2574 3097 9.227490 GCGCTAACAATGTACATATATAGAGAG 57.773 37.037 19.89 12.20 0.00 3.20
2653 3176 3.666274 TCATCCGTTAATGTTCACCGTT 58.334 40.909 0.00 0.00 0.00 4.44
2787 3314 7.884816 ATACGTTCATAAATTCATAGACCGG 57.115 36.000 0.00 0.00 0.00 5.28
2893 3614 2.134354 TGCCTTGGGGATGATGACATA 58.866 47.619 0.00 0.00 36.82 2.29
2902 3623 6.084060 TGGGGATGATGACATACTCTTCATA 58.916 40.000 0.00 0.00 41.61 2.15
2955 3678 7.891183 ATCATTTACCTTAGCGCTAGTAATG 57.109 36.000 22.53 21.55 0.00 1.90
2959 3682 3.869065 ACCTTAGCGCTAGTAATGCAAA 58.131 40.909 17.98 0.00 0.00 3.68
2960 3683 4.451900 ACCTTAGCGCTAGTAATGCAAAT 58.548 39.130 17.98 0.00 0.00 2.32
2988 3711 7.945134 ACAAGCATTTTTCTCTTACATTCACT 58.055 30.769 0.00 0.00 0.00 3.41
3021 3744 8.768019 GTTACTTGTAAGATTTTGTACCGAACT 58.232 33.333 0.00 0.00 0.00 3.01
3031 3754 6.730960 TTTTGTACCGAACTGATGAATACC 57.269 37.500 0.00 0.00 0.00 2.73
3126 3850 9.508642 GATCAAGGGTTTCTAATATCTTAAGGG 57.491 37.037 1.85 0.00 0.00 3.95
3127 3851 7.287810 TCAAGGGTTTCTAATATCTTAAGGGC 58.712 38.462 1.85 0.00 0.00 5.19
3128 3852 6.202202 AGGGTTTCTAATATCTTAAGGGCC 57.798 41.667 1.85 0.00 0.00 5.80
3129 3853 5.917682 AGGGTTTCTAATATCTTAAGGGCCT 59.082 40.000 0.00 0.00 0.00 5.19
3130 3854 6.004574 GGGTTTCTAATATCTTAAGGGCCTG 58.995 44.000 6.92 0.00 0.00 4.85
3131 3855 6.410504 GGGTTTCTAATATCTTAAGGGCCTGT 60.411 42.308 6.92 0.00 0.00 4.00
3132 3856 7.061054 GGTTTCTAATATCTTAAGGGCCTGTT 58.939 38.462 6.92 0.00 0.00 3.16
3133 3857 7.560262 GGTTTCTAATATCTTAAGGGCCTGTTT 59.440 37.037 6.92 0.00 0.00 2.83
3134 3858 8.406297 GTTTCTAATATCTTAAGGGCCTGTTTG 58.594 37.037 6.92 0.00 0.00 2.93
3135 3859 6.601332 TCTAATATCTTAAGGGCCTGTTTGG 58.399 40.000 6.92 0.00 39.35 3.28
3136 3860 4.881157 ATATCTTAAGGGCCTGTTTGGT 57.119 40.909 6.92 0.00 38.35 3.67
3137 3861 3.542969 ATCTTAAGGGCCTGTTTGGTT 57.457 42.857 6.92 0.00 38.35 3.67
3138 3862 2.871453 TCTTAAGGGCCTGTTTGGTTC 58.129 47.619 6.92 0.00 38.35 3.62
3139 3863 1.893137 CTTAAGGGCCTGTTTGGTTCC 59.107 52.381 6.92 0.00 38.35 3.62
3140 3864 0.854218 TAAGGGCCTGTTTGGTTCCA 59.146 50.000 6.92 0.00 38.35 3.53
3141 3865 0.031616 AAGGGCCTGTTTGGTTCCAA 60.032 50.000 6.92 0.00 38.35 3.53
3142 3866 0.031616 AGGGCCTGTTTGGTTCCAAA 60.032 50.000 4.50 12.29 38.35 3.28
3143 3867 1.055849 GGGCCTGTTTGGTTCCAAAT 58.944 50.000 18.11 0.00 38.07 2.32
3144 3868 2.158234 AGGGCCTGTTTGGTTCCAAATA 60.158 45.455 18.11 14.87 38.07 1.40
3145 3869 2.635427 GGGCCTGTTTGGTTCCAAATAA 59.365 45.455 18.11 10.23 38.07 1.40
3146 3870 3.306710 GGGCCTGTTTGGTTCCAAATAAG 60.307 47.826 18.11 17.05 38.07 1.73
3147 3871 3.323691 GGCCTGTTTGGTTCCAAATAAGT 59.676 43.478 18.11 0.00 38.07 2.24
3148 3872 4.556233 GCCTGTTTGGTTCCAAATAAGTC 58.444 43.478 18.11 7.50 38.07 3.01
3149 3873 4.038642 GCCTGTTTGGTTCCAAATAAGTCA 59.961 41.667 18.11 10.94 38.07 3.41
3150 3874 5.279456 GCCTGTTTGGTTCCAAATAAGTCAT 60.279 40.000 18.11 0.00 38.07 3.06
3151 3875 6.389906 CCTGTTTGGTTCCAAATAAGTCATC 58.610 40.000 18.11 5.59 38.07 2.92
3152 3876 6.015519 CCTGTTTGGTTCCAAATAAGTCATCA 60.016 38.462 18.11 9.20 38.07 3.07
3153 3877 7.353414 TGTTTGGTTCCAAATAAGTCATCAA 57.647 32.000 18.11 0.00 38.07 2.57
3154 3878 7.206687 TGTTTGGTTCCAAATAAGTCATCAAC 58.793 34.615 18.11 4.50 38.07 3.18
3155 3879 7.069331 TGTTTGGTTCCAAATAAGTCATCAACT 59.931 33.333 18.11 0.00 37.76 3.16
3156 3880 7.926018 GTTTGGTTCCAAATAAGTCATCAACTT 59.074 33.333 18.11 0.00 39.75 2.66
3197 3921 7.913674 AAAAAGTGACTTATTTTGCCAAACA 57.086 28.000 0.00 0.00 0.00 2.83
3198 3922 7.538303 AAAAGTGACTTATTTTGCCAAACAG 57.462 32.000 0.00 0.00 0.00 3.16
3199 3923 6.463995 AAGTGACTTATTTTGCCAAACAGA 57.536 33.333 0.00 0.00 0.00 3.41
3200 3924 5.831997 AGTGACTTATTTTGCCAAACAGAC 58.168 37.500 0.00 0.00 0.00 3.51
3201 3925 4.982295 GTGACTTATTTTGCCAAACAGACC 59.018 41.667 0.00 0.00 0.00 3.85
3202 3926 4.038642 TGACTTATTTTGCCAAACAGACCC 59.961 41.667 0.00 0.00 0.00 4.46
3203 3927 3.005367 ACTTATTTTGCCAAACAGACCCG 59.995 43.478 0.00 0.00 0.00 5.28
3204 3928 1.698506 ATTTTGCCAAACAGACCCGA 58.301 45.000 0.00 0.00 0.00 5.14
3205 3929 0.741915 TTTTGCCAAACAGACCCGAC 59.258 50.000 0.00 0.00 0.00 4.79
3206 3930 0.106918 TTTGCCAAACAGACCCGACT 60.107 50.000 0.00 0.00 0.00 4.18
3207 3931 0.106918 TTGCCAAACAGACCCGACTT 60.107 50.000 0.00 0.00 0.00 3.01
3208 3932 0.759959 TGCCAAACAGACCCGACTTA 59.240 50.000 0.00 0.00 0.00 2.24
3209 3933 1.349688 TGCCAAACAGACCCGACTTAT 59.650 47.619 0.00 0.00 0.00 1.73
3210 3934 2.568062 TGCCAAACAGACCCGACTTATA 59.432 45.455 0.00 0.00 0.00 0.98
3211 3935 3.008157 TGCCAAACAGACCCGACTTATAA 59.992 43.478 0.00 0.00 0.00 0.98
3212 3936 4.004982 GCCAAACAGACCCGACTTATAAA 58.995 43.478 0.00 0.00 0.00 1.40
3213 3937 4.638865 GCCAAACAGACCCGACTTATAAAT 59.361 41.667 0.00 0.00 0.00 1.40
3214 3938 5.220796 GCCAAACAGACCCGACTTATAAATC 60.221 44.000 0.00 0.00 0.00 2.17
3215 3939 5.878116 CCAAACAGACCCGACTTATAAATCA 59.122 40.000 0.00 0.00 0.00 2.57
3216 3940 6.183360 CCAAACAGACCCGACTTATAAATCAC 60.183 42.308 0.00 0.00 0.00 3.06
3217 3941 5.019785 ACAGACCCGACTTATAAATCACC 57.980 43.478 0.00 0.00 0.00 4.02
3218 3942 4.141779 ACAGACCCGACTTATAAATCACCC 60.142 45.833 0.00 0.00 0.00 4.61
3219 3943 3.390311 AGACCCGACTTATAAATCACCCC 59.610 47.826 0.00 0.00 0.00 4.95
3220 3944 3.116959 ACCCGACTTATAAATCACCCCA 58.883 45.455 0.00 0.00 0.00 4.96
3221 3945 3.524380 ACCCGACTTATAAATCACCCCAA 59.476 43.478 0.00 0.00 0.00 4.12
3222 3946 3.881089 CCCGACTTATAAATCACCCCAAC 59.119 47.826 0.00 0.00 0.00 3.77
3223 3947 4.384868 CCCGACTTATAAATCACCCCAACT 60.385 45.833 0.00 0.00 0.00 3.16
3224 3948 5.190677 CCGACTTATAAATCACCCCAACTT 58.809 41.667 0.00 0.00 0.00 2.66
3225 3949 6.350906 CCGACTTATAAATCACCCCAACTTA 58.649 40.000 0.00 0.00 0.00 2.24
3226 3950 6.996282 CCGACTTATAAATCACCCCAACTTAT 59.004 38.462 0.00 0.00 0.00 1.73
3227 3951 8.152246 CCGACTTATAAATCACCCCAACTTATA 58.848 37.037 0.00 0.00 0.00 0.98
3228 3952 9.550406 CGACTTATAAATCACCCCAACTTATAA 57.450 33.333 0.00 0.00 0.00 0.98
3246 3970 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
3247 3971 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
3248 3972 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
3249 3973 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
3250 3974 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
3251 3975 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
3252 3976 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
3253 3977 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
3254 3978 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
3255 3979 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
3256 3980 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
3257 3981 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
3258 3982 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
3259 3983 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
3260 3984 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
3261 3985 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
3262 3986 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
3263 3987 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
3264 3988 6.434965 GCTCCACCCCAACTTAAAACTTATAA 59.565 38.462 0.00 0.00 0.00 0.98
3265 3989 7.362660 GCTCCACCCCAACTTAAAACTTATAAG 60.363 40.741 11.05 11.05 36.62 1.73
3266 3990 7.528675 TCCACCCCAACTTAAAACTTATAAGT 58.471 34.615 12.50 12.50 43.57 2.24
3267 3991 7.666804 TCCACCCCAACTTAAAACTTATAAGTC 59.333 37.037 18.28 0.00 41.49 3.01
3268 3992 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
3269 3993 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
3270 3994 7.449395 ACCCCAACTTAAAACTTATAAGTCACC 59.551 37.037 18.28 0.00 41.49 4.02
3271 3995 7.094075 CCCCAACTTAAAACTTATAAGTCACCC 60.094 40.741 18.28 0.00 41.49 4.61
3272 3996 7.094075 CCCAACTTAAAACTTATAAGTCACCCC 60.094 40.741 18.28 0.00 41.49 4.95
3273 3997 7.094075 CCAACTTAAAACTTATAAGTCACCCCC 60.094 40.741 18.28 0.00 41.49 5.40
3274 3998 7.339177 ACTTAAAACTTATAAGTCACCCCCT 57.661 36.000 18.28 0.00 38.85 4.79
3275 3999 7.762610 ACTTAAAACTTATAAGTCACCCCCTT 58.237 34.615 18.28 4.77 38.85 3.95
3276 4000 8.229605 ACTTAAAACTTATAAGTCACCCCCTTT 58.770 33.333 18.28 14.40 38.85 3.11
3277 4001 9.085645 CTTAAAACTTATAAGTCACCCCCTTTT 57.914 33.333 18.28 13.78 38.57 2.27
3278 4002 6.911250 AAACTTATAAGTCACCCCCTTTTG 57.089 37.500 18.28 0.00 38.57 2.44
3279 4003 4.341487 ACTTATAAGTCACCCCCTTTTGC 58.659 43.478 12.50 0.00 32.86 3.68
3280 4004 1.834188 ATAAGTCACCCCCTTTTGCG 58.166 50.000 0.00 0.00 0.00 4.85
3281 4005 0.475044 TAAGTCACCCCCTTTTGCGT 59.525 50.000 0.00 0.00 0.00 5.24
3282 4006 1.106944 AAGTCACCCCCTTTTGCGTG 61.107 55.000 0.00 0.00 0.00 5.34
3283 4007 2.203422 TCACCCCCTTTTGCGTGG 60.203 61.111 0.00 0.00 0.00 4.94
3284 4008 3.302344 CACCCCCTTTTGCGTGGG 61.302 66.667 0.00 0.00 44.03 4.61
3285 4009 3.828023 ACCCCCTTTTGCGTGGGT 61.828 61.111 0.00 0.00 46.50 4.51
3286 4010 2.989253 CCCCCTTTTGCGTGGGTC 60.989 66.667 0.00 0.00 41.82 4.46
3287 4011 2.989253 CCCCTTTTGCGTGGGTCC 60.989 66.667 0.00 0.00 41.82 4.46
3288 4012 2.989253 CCCTTTTGCGTGGGTCCC 60.989 66.667 0.00 0.00 38.65 4.46
3289 4013 2.203422 CCTTTTGCGTGGGTCCCA 60.203 61.111 6.47 6.47 0.00 4.37
3299 4023 3.661648 GGGTCCCACCACCTGCAT 61.662 66.667 1.78 0.00 41.02 3.96
3300 4024 2.361610 GGTCCCACCACCTGCATG 60.362 66.667 0.00 0.00 38.42 4.06
3301 4025 2.756400 GTCCCACCACCTGCATGA 59.244 61.111 0.00 0.00 0.00 3.07
3302 4026 1.304282 GTCCCACCACCTGCATGAT 59.696 57.895 0.00 0.00 0.00 2.45
3303 4027 1.033746 GTCCCACCACCTGCATGATG 61.034 60.000 0.00 0.00 0.00 3.07
3304 4028 1.000521 CCCACCACCTGCATGATGT 60.001 57.895 0.00 0.00 0.00 3.06
3305 4029 0.612732 CCCACCACCTGCATGATGTT 60.613 55.000 0.00 0.00 0.00 2.71
3306 4030 0.528924 CCACCACCTGCATGATGTTG 59.471 55.000 0.00 0.00 0.00 3.33
3307 4031 1.536940 CACCACCTGCATGATGTTGA 58.463 50.000 0.00 0.00 0.00 3.18
3308 4032 2.097036 CACCACCTGCATGATGTTGAT 58.903 47.619 0.00 0.00 0.00 2.57
3309 4033 2.494471 CACCACCTGCATGATGTTGATT 59.506 45.455 0.00 0.00 0.00 2.57
3310 4034 2.494471 ACCACCTGCATGATGTTGATTG 59.506 45.455 0.00 0.00 0.00 2.67
3311 4035 2.159156 CCACCTGCATGATGTTGATTGG 60.159 50.000 0.00 0.00 0.00 3.16
3312 4036 2.494471 CACCTGCATGATGTTGATTGGT 59.506 45.455 0.00 0.00 0.00 3.67
3313 4037 2.494471 ACCTGCATGATGTTGATTGGTG 59.506 45.455 0.00 0.00 0.00 4.17
3314 4038 2.494471 CCTGCATGATGTTGATTGGTGT 59.506 45.455 0.00 0.00 0.00 4.16
3315 4039 3.507786 CTGCATGATGTTGATTGGTGTG 58.492 45.455 0.00 0.00 0.00 3.82
3316 4040 3.155501 TGCATGATGTTGATTGGTGTGA 58.844 40.909 0.00 0.00 0.00 3.58
3317 4041 3.573110 TGCATGATGTTGATTGGTGTGAA 59.427 39.130 0.00 0.00 0.00 3.18
3318 4042 4.038883 TGCATGATGTTGATTGGTGTGAAA 59.961 37.500 0.00 0.00 0.00 2.69
3319 4043 4.989797 GCATGATGTTGATTGGTGTGAAAA 59.010 37.500 0.00 0.00 0.00 2.29
3320 4044 5.119588 GCATGATGTTGATTGGTGTGAAAAG 59.880 40.000 0.00 0.00 0.00 2.27
3321 4045 5.199024 TGATGTTGATTGGTGTGAAAAGG 57.801 39.130 0.00 0.00 0.00 3.11
3322 4046 4.648762 TGATGTTGATTGGTGTGAAAAGGT 59.351 37.500 0.00 0.00 0.00 3.50
3323 4047 4.383850 TGTTGATTGGTGTGAAAAGGTG 57.616 40.909 0.00 0.00 0.00 4.00
3324 4048 3.766591 TGTTGATTGGTGTGAAAAGGTGT 59.233 39.130 0.00 0.00 0.00 4.16
3325 4049 4.111916 GTTGATTGGTGTGAAAAGGTGTG 58.888 43.478 0.00 0.00 0.00 3.82
3326 4050 3.360867 TGATTGGTGTGAAAAGGTGTGT 58.639 40.909 0.00 0.00 0.00 3.72
3327 4051 3.380004 TGATTGGTGTGAAAAGGTGTGTC 59.620 43.478 0.00 0.00 0.00 3.67
3328 4052 2.498644 TGGTGTGAAAAGGTGTGTCA 57.501 45.000 0.00 0.00 0.00 3.58
3329 4053 2.364632 TGGTGTGAAAAGGTGTGTCAG 58.635 47.619 0.00 0.00 0.00 3.51
3330 4054 1.676006 GGTGTGAAAAGGTGTGTCAGG 59.324 52.381 0.00 0.00 0.00 3.86
3331 4055 2.365582 GTGTGAAAAGGTGTGTCAGGT 58.634 47.619 0.00 0.00 0.00 4.00
3332 4056 2.097466 GTGTGAAAAGGTGTGTCAGGTG 59.903 50.000 0.00 0.00 0.00 4.00
3333 4057 2.026729 TGTGAAAAGGTGTGTCAGGTGA 60.027 45.455 0.00 0.00 0.00 4.02
3334 4058 2.354821 GTGAAAAGGTGTGTCAGGTGAC 59.645 50.000 2.99 2.99 44.97 3.67
3335 4059 2.238646 TGAAAAGGTGTGTCAGGTGACT 59.761 45.455 11.31 0.00 44.99 3.41
3336 4060 3.279434 GAAAAGGTGTGTCAGGTGACTT 58.721 45.455 11.31 0.00 44.99 3.01
3337 4061 4.080807 TGAAAAGGTGTGTCAGGTGACTTA 60.081 41.667 11.31 0.00 44.99 2.24
3338 4062 4.706842 AAAGGTGTGTCAGGTGACTTAT 57.293 40.909 11.31 0.00 44.99 1.73
3339 4063 5.818678 AAAGGTGTGTCAGGTGACTTATA 57.181 39.130 11.31 0.00 44.99 0.98
3340 4064 5.818678 AAGGTGTGTCAGGTGACTTATAA 57.181 39.130 11.31 0.00 44.99 0.98
3341 4065 5.407407 AGGTGTGTCAGGTGACTTATAAG 57.593 43.478 11.05 11.05 44.99 1.73
3342 4066 4.838986 AGGTGTGTCAGGTGACTTATAAGT 59.161 41.667 18.05 18.05 44.99 2.24
3363 4087 1.358759 GGTGACAACCAAACAGGCG 59.641 57.895 0.00 0.00 46.75 5.52
3364 4088 1.381165 GGTGACAACCAAACAGGCGT 61.381 55.000 0.00 0.00 46.75 5.68
3365 4089 0.248458 GTGACAACCAAACAGGCGTG 60.248 55.000 4.53 4.53 43.14 5.34
3366 4090 0.393132 TGACAACCAAACAGGCGTGA 60.393 50.000 14.38 0.00 43.14 4.35
3367 4091 0.028902 GACAACCAAACAGGCGTGAC 59.971 55.000 14.38 0.00 43.14 3.67
3368 4092 0.393808 ACAACCAAACAGGCGTGACT 60.394 50.000 14.38 0.00 43.14 3.41
3369 4093 0.738389 CAACCAAACAGGCGTGACTT 59.262 50.000 14.38 3.10 43.14 3.01
3370 4094 1.944024 CAACCAAACAGGCGTGACTTA 59.056 47.619 14.38 0.00 43.14 2.24
3371 4095 2.552315 CAACCAAACAGGCGTGACTTAT 59.448 45.455 14.38 0.00 43.14 1.73
3372 4096 3.688694 ACCAAACAGGCGTGACTTATA 57.311 42.857 14.38 0.00 43.14 0.98
3373 4097 4.010667 ACCAAACAGGCGTGACTTATAA 57.989 40.909 14.38 0.00 43.14 0.98
3374 4098 4.000988 ACCAAACAGGCGTGACTTATAAG 58.999 43.478 14.38 11.05 43.14 1.73
3375 4099 4.000988 CCAAACAGGCGTGACTTATAAGT 58.999 43.478 18.05 18.05 43.16 2.24
3396 4120 6.726490 AGTCACTAGTTTTAAGTCACCTGA 57.274 37.500 0.00 0.00 0.00 3.86
3397 4121 6.514063 AGTCACTAGTTTTAAGTCACCTGAC 58.486 40.000 0.00 0.00 45.08 3.51
3426 4150 5.945466 GTCGGGTGACTTATTAAAACCAA 57.055 39.130 0.00 0.00 42.08 3.67
3427 4151 6.316440 GTCGGGTGACTTATTAAAACCAAA 57.684 37.500 0.00 0.00 42.08 3.28
3428 4152 6.916440 GTCGGGTGACTTATTAAAACCAAAT 58.084 36.000 0.00 0.00 42.08 2.32
3429 4153 8.042944 GTCGGGTGACTTATTAAAACCAAATA 57.957 34.615 0.00 0.00 42.08 1.40
3430 4154 8.513774 GTCGGGTGACTTATTAAAACCAAATAA 58.486 33.333 0.00 0.00 42.08 1.40
3431 4155 8.732531 TCGGGTGACTTATTAAAACCAAATAAG 58.267 33.333 11.96 11.96 45.86 1.73
3432 4156 7.486870 CGGGTGACTTATTAAAACCAAATAAGC 59.513 37.037 13.00 8.35 44.97 3.09
3433 4157 7.762615 GGGTGACTTATTAAAACCAAATAAGCC 59.237 37.037 13.00 5.56 44.97 4.35
3434 4158 7.762615 GGTGACTTATTAAAACCAAATAAGCCC 59.237 37.037 13.00 8.59 44.97 5.19
3435 4159 8.528643 GTGACTTATTAAAACCAAATAAGCCCT 58.471 33.333 13.00 0.00 44.97 5.19
3436 4160 9.756571 TGACTTATTAAAACCAAATAAGCCCTA 57.243 29.630 13.00 0.00 44.97 3.53
3443 4167 6.791867 AAACCAAATAAGCCCTAAGAATCC 57.208 37.500 0.00 0.00 0.00 3.01
3444 4168 5.734031 ACCAAATAAGCCCTAAGAATCCT 57.266 39.130 0.00 0.00 0.00 3.24
3445 4169 6.092346 ACCAAATAAGCCCTAAGAATCCTT 57.908 37.500 0.00 0.00 36.43 3.36
3446 4170 6.129874 ACCAAATAAGCCCTAAGAATCCTTC 58.870 40.000 0.00 0.00 33.94 3.46
3447 4171 5.536538 CCAAATAAGCCCTAAGAATCCTTCC 59.463 44.000 0.00 0.00 33.94 3.46
3448 4172 6.368805 CAAATAAGCCCTAAGAATCCTTCCT 58.631 40.000 0.00 0.00 33.94 3.36
3449 4173 5.834281 ATAAGCCCTAAGAATCCTTCCTC 57.166 43.478 0.00 0.00 33.94 3.71
3450 4174 2.043227 AGCCCTAAGAATCCTTCCTCG 58.957 52.381 0.00 0.00 33.94 4.63
3451 4175 1.070914 GCCCTAAGAATCCTTCCTCGG 59.929 57.143 0.00 0.00 33.94 4.63
3452 4176 2.399580 CCCTAAGAATCCTTCCTCGGT 58.600 52.381 0.00 0.00 33.94 4.69
3453 4177 3.573695 CCCTAAGAATCCTTCCTCGGTA 58.426 50.000 0.00 0.00 33.94 4.02
3454 4178 4.161102 CCCTAAGAATCCTTCCTCGGTAT 58.839 47.826 0.00 0.00 33.94 2.73
3455 4179 4.021016 CCCTAAGAATCCTTCCTCGGTATG 60.021 50.000 0.00 0.00 33.94 2.39
3456 4180 4.833380 CCTAAGAATCCTTCCTCGGTATGA 59.167 45.833 0.00 0.00 33.94 2.15
3457 4181 4.946478 AAGAATCCTTCCTCGGTATGAG 57.054 45.455 0.00 0.00 44.83 2.90
3458 4182 5.702266 TAAGAATCCTTCCTCGGTATGAGA 58.298 41.667 0.00 0.00 39.17 3.27
3459 4183 6.134055 TAAGAATCCTTCCTCGGTATGAGAA 58.866 40.000 0.00 0.00 39.17 2.87
3460 4184 6.265649 TAAGAATCCTTCCTCGGTATGAGAAG 59.734 42.308 0.00 0.00 39.17 2.85
3461 4185 8.076347 TAAGAATCCTTCCTCGGTATGAGAAGT 61.076 40.741 0.00 0.00 39.17 3.01
3475 4199 9.360093 CGGTATGAGAAGTAAGATATCAAATCC 57.640 37.037 5.32 0.00 0.00 3.01
3476 4200 9.360093 GGTATGAGAAGTAAGATATCAAATCCG 57.640 37.037 5.32 0.00 0.00 4.18
3477 4201 7.897575 ATGAGAAGTAAGATATCAAATCCGC 57.102 36.000 5.32 0.00 0.00 5.54
3478 4202 5.920840 TGAGAAGTAAGATATCAAATCCGCG 59.079 40.000 5.32 0.00 0.00 6.46
3479 4203 5.230942 AGAAGTAAGATATCAAATCCGCGG 58.769 41.667 22.12 22.12 0.00 6.46
3480 4204 4.866508 AGTAAGATATCAAATCCGCGGA 57.133 40.909 33.12 33.12 0.00 5.54
3481 4205 4.810790 AGTAAGATATCAAATCCGCGGAG 58.189 43.478 33.87 20.16 0.00 4.63
3482 4206 3.753294 AAGATATCAAATCCGCGGAGT 57.247 42.857 33.87 29.53 0.00 3.85
3483 4207 3.753294 AGATATCAAATCCGCGGAGTT 57.247 42.857 33.22 33.22 32.32 3.01
3484 4208 3.654414 AGATATCAAATCCGCGGAGTTC 58.346 45.455 35.59 24.58 29.47 3.01
3485 4209 3.322254 AGATATCAAATCCGCGGAGTTCT 59.678 43.478 35.59 26.35 29.47 3.01
3486 4210 1.941325 ATCAAATCCGCGGAGTTCTC 58.059 50.000 35.59 0.00 29.47 2.87
3487 4211 0.108329 TCAAATCCGCGGAGTTCTCC 60.108 55.000 35.59 8.66 29.47 3.71
3488 4212 0.108138 CAAATCCGCGGAGTTCTCCT 60.108 55.000 35.59 14.66 29.47 3.69
3489 4213 1.136305 CAAATCCGCGGAGTTCTCCTA 59.864 52.381 35.59 9.06 29.47 2.94
3490 4214 1.705873 AATCCGCGGAGTTCTCCTAT 58.294 50.000 33.87 10.46 0.00 2.57
3491 4215 0.962489 ATCCGCGGAGTTCTCCTATG 59.038 55.000 33.87 0.00 0.00 2.23
3492 4216 0.106868 TCCGCGGAGTTCTCCTATGA 60.107 55.000 27.28 0.00 0.00 2.15
3493 4217 0.312416 CCGCGGAGTTCTCCTATGAG 59.688 60.000 24.07 3.81 40.17 2.90
3494 4218 0.318275 CGCGGAGTTCTCCTATGAGC 60.318 60.000 15.60 10.39 38.58 4.26
3495 4219 0.032815 GCGGAGTTCTCCTATGAGCC 59.967 60.000 15.60 0.00 38.58 4.70
3496 4220 1.403814 CGGAGTTCTCCTATGAGCCA 58.596 55.000 15.60 0.00 38.58 4.75
3497 4221 1.757118 CGGAGTTCTCCTATGAGCCAA 59.243 52.381 15.60 0.00 38.58 4.52
3498 4222 2.366916 CGGAGTTCTCCTATGAGCCAAT 59.633 50.000 15.60 0.00 38.58 3.16
3499 4223 3.737850 GGAGTTCTCCTATGAGCCAATG 58.262 50.000 11.20 0.00 38.58 2.82
3500 4224 3.389329 GGAGTTCTCCTATGAGCCAATGA 59.611 47.826 11.20 0.00 38.58 2.57
3501 4225 4.041444 GGAGTTCTCCTATGAGCCAATGAT 59.959 45.833 11.20 0.00 38.58 2.45
3502 4226 5.455899 GGAGTTCTCCTATGAGCCAATGATT 60.456 44.000 11.20 0.00 38.58 2.57
3503 4227 6.239714 GGAGTTCTCCTATGAGCCAATGATTA 60.240 42.308 11.20 0.00 38.58 1.75
3504 4228 6.767456 AGTTCTCCTATGAGCCAATGATTAG 58.233 40.000 0.00 0.00 38.58 1.73
3505 4229 5.157940 TCTCCTATGAGCCAATGATTAGC 57.842 43.478 0.00 0.00 38.58 3.09
3506 4230 4.842948 TCTCCTATGAGCCAATGATTAGCT 59.157 41.667 0.00 0.00 38.58 3.32
3511 4235 2.723322 AGCCAATGATTAGCTCTGCA 57.277 45.000 0.00 0.00 28.40 4.41
3512 4236 2.295885 AGCCAATGATTAGCTCTGCAC 58.704 47.619 0.00 0.00 28.40 4.57
3513 4237 2.092538 AGCCAATGATTAGCTCTGCACT 60.093 45.455 0.00 0.00 28.40 4.40
3514 4238 2.290093 GCCAATGATTAGCTCTGCACTC 59.710 50.000 0.00 0.00 0.00 3.51
3515 4239 3.538591 CCAATGATTAGCTCTGCACTCA 58.461 45.455 0.00 0.00 0.00 3.41
3516 4240 3.943381 CCAATGATTAGCTCTGCACTCAA 59.057 43.478 0.00 0.00 0.00 3.02
3517 4241 4.201891 CCAATGATTAGCTCTGCACTCAAC 60.202 45.833 0.00 0.00 0.00 3.18
3518 4242 3.969287 TGATTAGCTCTGCACTCAACT 57.031 42.857 0.00 0.00 0.00 3.16
3519 4243 5.604758 ATGATTAGCTCTGCACTCAACTA 57.395 39.130 0.00 0.00 0.00 2.24
3520 4244 5.405935 TGATTAGCTCTGCACTCAACTAA 57.594 39.130 0.00 0.00 0.00 2.24
3521 4245 5.793817 TGATTAGCTCTGCACTCAACTAAA 58.206 37.500 0.00 0.00 0.00 1.85
3522 4246 6.230472 TGATTAGCTCTGCACTCAACTAAAA 58.770 36.000 0.00 0.00 0.00 1.52
3523 4247 6.710295 TGATTAGCTCTGCACTCAACTAAAAA 59.290 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.269517 GCAGATAGAGGGAAGCGACAG 60.270 57.143 0.00 0.00 0.00 3.51
2 3 1.036707 AGCAGATAGAGGGAAGCGAC 58.963 55.000 0.00 0.00 0.00 5.19
3 4 1.781786 AAGCAGATAGAGGGAAGCGA 58.218 50.000 0.00 0.00 0.00 4.93
4 5 2.159043 TCAAAGCAGATAGAGGGAAGCG 60.159 50.000 0.00 0.00 0.00 4.68
5 6 3.550437 TCAAAGCAGATAGAGGGAAGC 57.450 47.619 0.00 0.00 0.00 3.86
6 7 6.039159 GGAAAATCAAAGCAGATAGAGGGAAG 59.961 42.308 0.00 0.00 0.00 3.46
7 8 5.888161 GGAAAATCAAAGCAGATAGAGGGAA 59.112 40.000 0.00 0.00 0.00 3.97
8 9 5.440610 GGAAAATCAAAGCAGATAGAGGGA 58.559 41.667 0.00 0.00 0.00 4.20
9 10 4.582240 GGGAAAATCAAAGCAGATAGAGGG 59.418 45.833 0.00 0.00 0.00 4.30
10 11 4.582240 GGGGAAAATCAAAGCAGATAGAGG 59.418 45.833 0.00 0.00 0.00 3.69
11 12 5.444176 AGGGGAAAATCAAAGCAGATAGAG 58.556 41.667 0.00 0.00 0.00 2.43
12 13 5.440610 GAGGGGAAAATCAAAGCAGATAGA 58.559 41.667 0.00 0.00 0.00 1.98
13 14 4.582240 GGAGGGGAAAATCAAAGCAGATAG 59.418 45.833 0.00 0.00 0.00 2.08
14 15 4.536765 GGAGGGGAAAATCAAAGCAGATA 58.463 43.478 0.00 0.00 0.00 1.98
15 16 3.369175 GGAGGGGAAAATCAAAGCAGAT 58.631 45.455 0.00 0.00 0.00 2.90
16 17 2.557452 GGGAGGGGAAAATCAAAGCAGA 60.557 50.000 0.00 0.00 0.00 4.26
17 18 1.827344 GGGAGGGGAAAATCAAAGCAG 59.173 52.381 0.00 0.00 0.00 4.24
18 19 1.148867 TGGGAGGGGAAAATCAAAGCA 59.851 47.619 0.00 0.00 0.00 3.91
19 20 1.937191 TGGGAGGGGAAAATCAAAGC 58.063 50.000 0.00 0.00 0.00 3.51
20 21 3.711863 TGATGGGAGGGGAAAATCAAAG 58.288 45.455 0.00 0.00 0.00 2.77
21 22 3.843177 TGATGGGAGGGGAAAATCAAA 57.157 42.857 0.00 0.00 0.00 2.69
22 23 4.264759 TGAATGATGGGAGGGGAAAATCAA 60.265 41.667 0.00 0.00 31.49 2.57
23 24 3.271755 TGAATGATGGGAGGGGAAAATCA 59.728 43.478 0.00 0.00 0.00 2.57
24 25 3.914771 TGAATGATGGGAGGGGAAAATC 58.085 45.455 0.00 0.00 0.00 2.17
25 26 4.564616 ATGAATGATGGGAGGGGAAAAT 57.435 40.909 0.00 0.00 0.00 1.82
26 27 4.351110 AATGAATGATGGGAGGGGAAAA 57.649 40.909 0.00 0.00 0.00 2.29
27 28 4.016292 AGAAATGAATGATGGGAGGGGAAA 60.016 41.667 0.00 0.00 0.00 3.13
28 29 3.533068 AGAAATGAATGATGGGAGGGGAA 59.467 43.478 0.00 0.00 0.00 3.97
29 30 3.133665 AGAAATGAATGATGGGAGGGGA 58.866 45.455 0.00 0.00 0.00 4.81
30 31 3.607490 AGAAATGAATGATGGGAGGGG 57.393 47.619 0.00 0.00 0.00 4.79
31 32 5.206587 AGAAAGAAATGAATGATGGGAGGG 58.793 41.667 0.00 0.00 0.00 4.30
32 33 7.886629 TTAGAAAGAAATGAATGATGGGAGG 57.113 36.000 0.00 0.00 0.00 4.30
55 56 9.923143 GTTGAACTGGCTTTTAGGTAATTATTT 57.077 29.630 0.00 0.00 0.00 1.40
56 57 9.309224 AGTTGAACTGGCTTTTAGGTAATTATT 57.691 29.630 0.00 0.00 0.00 1.40
57 58 8.739972 CAGTTGAACTGGCTTTTAGGTAATTAT 58.260 33.333 17.27 0.00 42.35 1.28
58 59 7.940137 TCAGTTGAACTGGCTTTTAGGTAATTA 59.060 33.333 23.65 0.00 45.94 1.40
59 60 6.775629 TCAGTTGAACTGGCTTTTAGGTAATT 59.224 34.615 23.65 0.00 45.94 1.40
60 61 6.303839 TCAGTTGAACTGGCTTTTAGGTAAT 58.696 36.000 23.65 0.00 45.94 1.89
61 62 5.686753 TCAGTTGAACTGGCTTTTAGGTAA 58.313 37.500 23.65 0.00 45.94 2.85
62 63 5.298989 TCAGTTGAACTGGCTTTTAGGTA 57.701 39.130 23.65 0.00 45.94 3.08
63 64 4.164843 TCAGTTGAACTGGCTTTTAGGT 57.835 40.909 23.65 0.00 45.94 3.08
74 75 8.535335 AGATATGTGACAGTTATCAGTTGAACT 58.465 33.333 8.43 0.00 36.31 3.01
104 105 9.613428 CAAGAGATATGGTTTCATTTGGTAGTA 57.387 33.333 0.00 0.00 34.96 1.82
105 106 8.328758 TCAAGAGATATGGTTTCATTTGGTAGT 58.671 33.333 0.00 0.00 34.96 2.73
106 107 8.737168 TCAAGAGATATGGTTTCATTTGGTAG 57.263 34.615 0.00 0.00 34.96 3.18
155 156 7.926674 TGCAATCAATGGTATATATCTGGTG 57.073 36.000 0.00 0.00 0.00 4.17
165 166 8.618702 TCAACAAAAATTGCAATCAATGGTAT 57.381 26.923 13.38 0.00 41.77 2.73
249 250 9.922477 AAAGACTTATATTTAAGAAGAAGGGGG 57.078 33.333 9.58 0.00 38.56 5.40
278 292 9.821662 TCGTATGTAGTCTGTATTTGAATATCG 57.178 33.333 0.00 0.00 0.00 2.92
285 299 9.737427 ATTCTCTTCGTATGTAGTCTGTATTTG 57.263 33.333 0.00 0.00 0.00 2.32
353 372 6.039616 AGTGTTGTTTTGTGTTATGCGATTT 58.960 32.000 0.00 0.00 0.00 2.17
367 386 7.147742 ACCCAATTTCTCATGTAGTGTTGTTTT 60.148 33.333 0.00 0.00 0.00 2.43
449 469 8.557450 AGGGTATTAATGTTCCTGAATAGTGTT 58.443 33.333 0.00 0.00 0.00 3.32
454 474 9.793259 GAATGAGGGTATTAATGTTCCTGAATA 57.207 33.333 9.75 0.00 0.00 1.75
475 496 6.711277 ACACAGCTTTACATCCTAAGAATGA 58.289 36.000 0.00 0.00 0.00 2.57
524 545 3.557595 GGTTTTAGATGCTGATCACGAGG 59.442 47.826 0.00 0.00 0.00 4.63
545 566 1.746991 GCTGCTCCCTCTTTTCGGG 60.747 63.158 0.00 0.00 43.38 5.14
579 600 3.607987 CGATCGTGCTCGTTCGCC 61.608 66.667 23.23 4.10 46.59 5.54
596 617 1.774046 TTTCGGTCCCGCAACGTTTC 61.774 55.000 0.00 0.00 39.59 2.78
607 628 5.064198 TCGTGTTCATATCATTTTTCGGTCC 59.936 40.000 0.00 0.00 0.00 4.46
608 629 6.102006 TCGTGTTCATATCATTTTTCGGTC 57.898 37.500 0.00 0.00 0.00 4.79
609 630 5.064707 CCTCGTGTTCATATCATTTTTCGGT 59.935 40.000 0.00 0.00 0.00 4.69
631 652 2.040412 ACAATCTTTTTCCGCTCCTCCT 59.960 45.455 0.00 0.00 0.00 3.69
667 688 1.990060 ATGACAGGTGGGTCCCTCG 60.990 63.158 10.00 0.00 36.97 4.63
723 744 2.346803 GCTCAACGCTCCTTCATGTAA 58.653 47.619 0.00 0.00 35.14 2.41
729 750 2.815647 CCCGCTCAACGCTCCTTC 60.816 66.667 0.00 0.00 41.76 3.46
802 823 1.833860 GTGCGCTTGTGCTTTAAACA 58.166 45.000 9.73 0.00 36.97 2.83
832 853 3.781307 TGGACGGGGGAAGATGCG 61.781 66.667 0.00 0.00 0.00 4.73
895 916 3.423645 CGACGAGGAAAAATGTGAGCTTC 60.424 47.826 0.00 0.00 0.00 3.86
985 1006 1.300233 CCATCGCTCTCCGGTTAGC 60.300 63.158 17.44 17.44 37.59 3.09
987 1008 1.721664 CGTCCATCGCTCTCCGGTTA 61.722 60.000 0.00 0.00 37.59 2.85
1182 1209 2.989824 AGGTGCGCGTACCAGTCT 60.990 61.111 40.96 22.75 43.37 3.24
1483 1510 3.998672 GTCGGTGAGGACGGGCAA 61.999 66.667 0.00 0.00 0.00 4.52
2103 2623 0.601046 CAGCGCTGAACTTGGAGTCA 60.601 55.000 33.66 0.00 0.00 3.41
2451 2971 2.573869 CTGATGGACGCCGTGAGT 59.426 61.111 0.00 0.00 0.00 3.41
2472 2992 1.690633 GATCCTCACTGGGAGCCCA 60.691 63.158 8.20 8.20 42.62 5.36
2541 3064 1.382522 ACATTGTTAGCGCATCCCAG 58.617 50.000 11.47 0.00 0.00 4.45
2579 3102 9.747898 CAACTATCCTACTGATATCTCCTACTT 57.252 37.037 3.98 0.00 35.41 2.24
2629 3152 4.153475 ACGGTGAACATTAACGGATGAAAG 59.847 41.667 3.20 0.00 0.00 2.62
2637 3160 5.929278 TGGAAATAACGGTGAACATTAACG 58.071 37.500 0.00 0.00 0.00 3.18
2677 3200 7.465379 CGGTCGATTTTCTGAAATTATAGCACA 60.465 37.037 3.31 0.00 35.65 4.57
2699 3222 3.501062 CCTGTAACCTTCCTTTTTCGGTC 59.499 47.826 0.00 0.00 0.00 4.79
2708 3231 2.541466 CCTGAGACCTGTAACCTTCCT 58.459 52.381 0.00 0.00 0.00 3.36
2787 3314 5.249393 TCAGCCATAGAAATAGGGAGGATTC 59.751 44.000 0.00 0.00 0.00 2.52
2865 3586 4.541250 TCATCCCCAAGGCAATATCTTT 57.459 40.909 0.00 0.00 0.00 2.52
2868 3589 3.760684 GTCATCATCCCCAAGGCAATATC 59.239 47.826 0.00 0.00 0.00 1.63
2929 3650 9.419297 CATTACTAGCGCTAAGGTAAATGATTA 57.581 33.333 24.51 8.32 35.01 1.75
2982 3705 9.726438 ATCTTACAAGTAACTGCTTTAGTGAAT 57.274 29.630 0.00 0.00 40.26 2.57
3021 3744 6.094464 CAGAAAGCAATCAGTGGTATTCATCA 59.906 38.462 0.00 0.00 36.79 3.07
3031 3754 5.238868 CAGGGATATCAGAAAGCAATCAGTG 59.761 44.000 4.83 0.00 0.00 3.66
3085 3808 3.484407 CTTGATCTTCAGGGCCCAATAG 58.516 50.000 27.56 17.33 0.00 1.73
3125 3849 3.323691 ACTTATTTGGAACCAAACAGGCC 59.676 43.478 19.23 0.00 46.80 5.19
3126 3850 4.038642 TGACTTATTTGGAACCAAACAGGC 59.961 41.667 19.23 18.98 46.80 4.85
3127 3851 5.782893 TGACTTATTTGGAACCAAACAGG 57.217 39.130 19.23 12.17 46.80 4.00
3128 3852 6.980593 TGATGACTTATTTGGAACCAAACAG 58.019 36.000 19.23 18.64 46.80 3.16
3129 3853 6.968263 TGATGACTTATTTGGAACCAAACA 57.032 33.333 19.23 13.20 46.80 2.83
3130 3854 7.433680 AGTTGATGACTTATTTGGAACCAAAC 58.566 34.615 19.23 8.57 41.09 2.93
3131 3855 7.595819 AGTTGATGACTTATTTGGAACCAAA 57.404 32.000 19.15 19.15 41.86 3.28
3132 3856 7.595819 AAGTTGATGACTTATTTGGAACCAA 57.404 32.000 1.83 1.83 46.61 3.67
3173 3897 7.821846 TCTGTTTGGCAAAATAAGTCACTTTTT 59.178 29.630 15.29 0.00 0.00 1.94
3174 3898 7.277760 GTCTGTTTGGCAAAATAAGTCACTTTT 59.722 33.333 15.29 0.00 0.00 2.27
3175 3899 6.756542 GTCTGTTTGGCAAAATAAGTCACTTT 59.243 34.615 15.29 0.00 0.00 2.66
3176 3900 6.273071 GTCTGTTTGGCAAAATAAGTCACTT 58.727 36.000 15.29 0.00 0.00 3.16
3177 3901 5.221244 GGTCTGTTTGGCAAAATAAGTCACT 60.221 40.000 15.29 0.00 0.00 3.41
3178 3902 4.982295 GGTCTGTTTGGCAAAATAAGTCAC 59.018 41.667 15.29 7.77 0.00 3.67
3179 3903 4.038642 GGGTCTGTTTGGCAAAATAAGTCA 59.961 41.667 15.29 6.39 0.00 3.41
3180 3904 4.556233 GGGTCTGTTTGGCAAAATAAGTC 58.444 43.478 15.29 10.05 0.00 3.01
3181 3905 3.005367 CGGGTCTGTTTGGCAAAATAAGT 59.995 43.478 15.29 0.00 0.00 2.24
3182 3906 3.254657 TCGGGTCTGTTTGGCAAAATAAG 59.745 43.478 15.29 12.47 0.00 1.73
3183 3907 3.004944 GTCGGGTCTGTTTGGCAAAATAA 59.995 43.478 15.29 2.73 0.00 1.40
3184 3908 2.554893 GTCGGGTCTGTTTGGCAAAATA 59.445 45.455 15.29 6.13 0.00 1.40
3185 3909 1.339929 GTCGGGTCTGTTTGGCAAAAT 59.660 47.619 15.29 0.00 0.00 1.82
3186 3910 0.741915 GTCGGGTCTGTTTGGCAAAA 59.258 50.000 15.29 4.59 0.00 2.44
3187 3911 0.106918 AGTCGGGTCTGTTTGGCAAA 60.107 50.000 8.93 8.93 0.00 3.68
3188 3912 0.106918 AAGTCGGGTCTGTTTGGCAA 60.107 50.000 0.00 0.00 0.00 4.52
3189 3913 0.759959 TAAGTCGGGTCTGTTTGGCA 59.240 50.000 0.00 0.00 0.00 4.92
3190 3914 2.109425 ATAAGTCGGGTCTGTTTGGC 57.891 50.000 0.00 0.00 0.00 4.52
3191 3915 5.878116 TGATTTATAAGTCGGGTCTGTTTGG 59.122 40.000 3.81 0.00 0.00 3.28
3192 3916 6.183360 GGTGATTTATAAGTCGGGTCTGTTTG 60.183 42.308 3.81 0.00 0.00 2.93
3193 3917 5.878669 GGTGATTTATAAGTCGGGTCTGTTT 59.121 40.000 3.81 0.00 0.00 2.83
3194 3918 5.425630 GGTGATTTATAAGTCGGGTCTGTT 58.574 41.667 3.81 0.00 0.00 3.16
3195 3919 4.141779 GGGTGATTTATAAGTCGGGTCTGT 60.142 45.833 3.81 0.00 0.00 3.41
3196 3920 4.377897 GGGTGATTTATAAGTCGGGTCTG 58.622 47.826 3.81 0.00 0.00 3.51
3197 3921 3.390311 GGGGTGATTTATAAGTCGGGTCT 59.610 47.826 3.81 0.00 0.00 3.85
3198 3922 3.135167 TGGGGTGATTTATAAGTCGGGTC 59.865 47.826 3.81 0.00 0.00 4.46
3199 3923 3.116959 TGGGGTGATTTATAAGTCGGGT 58.883 45.455 3.81 0.00 0.00 5.28
3200 3924 3.849563 TGGGGTGATTTATAAGTCGGG 57.150 47.619 3.81 0.00 0.00 5.14
3201 3925 4.777463 AGTTGGGGTGATTTATAAGTCGG 58.223 43.478 3.81 0.00 0.00 4.79
3202 3926 9.550406 TTATAAGTTGGGGTGATTTATAAGTCG 57.450 33.333 3.81 0.00 0.00 4.18
3210 3934 9.408648 CTTATGACTTATAAGTTGGGGTGATTT 57.591 33.333 18.96 0.00 42.11 2.17
3211 3935 8.980481 CTTATGACTTATAAGTTGGGGTGATT 57.020 34.615 18.96 0.00 42.11 2.57
3223 3947 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
3224 3948 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
3225 3949 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
3226 3950 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
3227 3951 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
3228 3952 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
3229 3953 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
3230 3954 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
3231 3955 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
3232 3956 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
3233 3957 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
3234 3958 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
3235 3959 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
3236 3960 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
3237 3961 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
3238 3962 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
3239 3963 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
3240 3964 7.668469 ACTTATAAGTTTTAAGTTGGGGTGGAG 59.332 37.037 12.50 0.00 36.70 3.86
3241 3965 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
3242 3966 7.449086 TGACTTATAAGTTTTAAGTTGGGGTGG 59.551 37.037 18.96 0.00 39.40 4.61
3243 3967 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
3244 3968 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
3245 3969 7.094075 GGGTGACTTATAAGTTTTAAGTTGGGG 60.094 40.741 18.96 0.00 39.40 4.96
3246 3970 7.094075 GGGGTGACTTATAAGTTTTAAGTTGGG 60.094 40.741 18.96 0.00 39.40 4.12
3247 3971 7.094075 GGGGGTGACTTATAAGTTTTAAGTTGG 60.094 40.741 18.96 0.00 39.40 3.77
3248 3972 7.668469 AGGGGGTGACTTATAAGTTTTAAGTTG 59.332 37.037 18.96 0.00 39.40 3.16
3249 3973 7.762610 AGGGGGTGACTTATAAGTTTTAAGTT 58.237 34.615 18.96 2.13 39.40 2.66
3250 3974 7.339177 AGGGGGTGACTTATAAGTTTTAAGT 57.661 36.000 18.96 15.86 41.41 2.24
3251 3975 8.645814 AAAGGGGGTGACTTATAAGTTTTAAG 57.354 34.615 18.96 10.49 39.88 1.85
3252 3976 8.862085 CAAAAGGGGGTGACTTATAAGTTTTAA 58.138 33.333 18.96 3.77 39.88 1.52
3253 3977 7.039574 GCAAAAGGGGGTGACTTATAAGTTTTA 60.040 37.037 18.96 6.80 39.88 1.52
3254 3978 6.239487 GCAAAAGGGGGTGACTTATAAGTTTT 60.239 38.462 18.96 10.67 39.88 2.43
3255 3979 5.245301 GCAAAAGGGGGTGACTTATAAGTTT 59.755 40.000 18.96 5.24 39.88 2.66
3256 3980 4.770531 GCAAAAGGGGGTGACTTATAAGTT 59.229 41.667 18.96 3.63 39.88 2.66
3257 3981 4.341487 GCAAAAGGGGGTGACTTATAAGT 58.659 43.478 18.05 18.05 43.16 2.24
3258 3982 3.377172 CGCAAAAGGGGGTGACTTATAAG 59.623 47.826 11.05 11.05 0.00 1.73
3259 3983 3.244981 ACGCAAAAGGGGGTGACTTATAA 60.245 43.478 0.00 0.00 32.17 0.98
3260 3984 2.306512 ACGCAAAAGGGGGTGACTTATA 59.693 45.455 0.00 0.00 32.17 0.98
3261 3985 1.074889 ACGCAAAAGGGGGTGACTTAT 59.925 47.619 0.00 0.00 32.17 1.73
3262 3986 0.475044 ACGCAAAAGGGGGTGACTTA 59.525 50.000 0.00 0.00 32.17 2.24
3263 3987 1.229076 ACGCAAAAGGGGGTGACTT 59.771 52.632 0.00 0.00 32.17 3.01
3264 3988 2.923837 ACGCAAAAGGGGGTGACT 59.076 55.556 0.00 0.00 32.17 3.41
3272 3996 2.203422 TGGGACCCACGCAAAAGG 60.203 61.111 9.95 0.00 38.47 3.11
3273 3997 3.039134 GTGGGACCCACGCAAAAG 58.961 61.111 27.79 0.00 44.95 2.27
3282 4006 3.661648 ATGCAGGTGGTGGGACCC 61.662 66.667 2.45 2.45 37.50 4.46
3283 4007 2.215451 ATCATGCAGGTGGTGGGACC 62.215 60.000 0.00 0.00 39.22 4.46
3284 4008 1.033746 CATCATGCAGGTGGTGGGAC 61.034 60.000 0.00 0.00 0.00 4.46
3285 4009 1.303948 CATCATGCAGGTGGTGGGA 59.696 57.895 0.00 0.00 0.00 4.37
3286 4010 0.612732 AACATCATGCAGGTGGTGGG 60.613 55.000 5.59 0.00 34.50 4.61
3287 4011 0.528924 CAACATCATGCAGGTGGTGG 59.471 55.000 5.59 0.00 34.50 4.61
3288 4012 1.536940 TCAACATCATGCAGGTGGTG 58.463 50.000 11.19 11.19 36.30 4.17
3289 4013 2.494471 CAATCAACATCATGCAGGTGGT 59.506 45.455 0.00 0.00 0.00 4.16
3290 4014 2.159156 CCAATCAACATCATGCAGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
3291 4015 2.494471 ACCAATCAACATCATGCAGGTG 59.506 45.455 0.00 0.00 0.00 4.00
3292 4016 2.494471 CACCAATCAACATCATGCAGGT 59.506 45.455 0.00 0.00 0.00 4.00
3293 4017 2.494471 ACACCAATCAACATCATGCAGG 59.506 45.455 0.00 0.00 0.00 4.85
3294 4018 3.191791 TCACACCAATCAACATCATGCAG 59.808 43.478 0.00 0.00 0.00 4.41
3295 4019 3.155501 TCACACCAATCAACATCATGCA 58.844 40.909 0.00 0.00 0.00 3.96
3296 4020 3.853831 TCACACCAATCAACATCATGC 57.146 42.857 0.00 0.00 0.00 4.06
3297 4021 5.636121 CCTTTTCACACCAATCAACATCATG 59.364 40.000 0.00 0.00 0.00 3.07
3298 4022 5.305128 ACCTTTTCACACCAATCAACATCAT 59.695 36.000 0.00 0.00 0.00 2.45
3299 4023 4.648762 ACCTTTTCACACCAATCAACATCA 59.351 37.500 0.00 0.00 0.00 3.07
3300 4024 4.984161 CACCTTTTCACACCAATCAACATC 59.016 41.667 0.00 0.00 0.00 3.06
3301 4025 4.405358 ACACCTTTTCACACCAATCAACAT 59.595 37.500 0.00 0.00 0.00 2.71
3302 4026 3.766591 ACACCTTTTCACACCAATCAACA 59.233 39.130 0.00 0.00 0.00 3.33
3303 4027 4.111916 CACACCTTTTCACACCAATCAAC 58.888 43.478 0.00 0.00 0.00 3.18
3304 4028 3.766591 ACACACCTTTTCACACCAATCAA 59.233 39.130 0.00 0.00 0.00 2.57
3305 4029 3.360867 ACACACCTTTTCACACCAATCA 58.639 40.909 0.00 0.00 0.00 2.57
3306 4030 3.380004 TGACACACCTTTTCACACCAATC 59.620 43.478 0.00 0.00 0.00 2.67
3307 4031 3.360867 TGACACACCTTTTCACACCAAT 58.639 40.909 0.00 0.00 0.00 3.16
3308 4032 2.752354 CTGACACACCTTTTCACACCAA 59.248 45.455 0.00 0.00 0.00 3.67
3309 4033 2.364632 CTGACACACCTTTTCACACCA 58.635 47.619 0.00 0.00 0.00 4.17
3310 4034 1.676006 CCTGACACACCTTTTCACACC 59.324 52.381 0.00 0.00 0.00 4.16
3311 4035 2.097466 CACCTGACACACCTTTTCACAC 59.903 50.000 0.00 0.00 0.00 3.82
3312 4036 2.026729 TCACCTGACACACCTTTTCACA 60.027 45.455 0.00 0.00 0.00 3.58
3313 4037 2.354821 GTCACCTGACACACCTTTTCAC 59.645 50.000 0.31 0.00 44.18 3.18
3314 4038 2.639065 GTCACCTGACACACCTTTTCA 58.361 47.619 0.31 0.00 44.18 2.69
3328 4052 9.361969 GGTTGTCACCAGACTTATAAGTCACCT 62.362 44.444 35.55 19.97 46.91 4.00
3329 4053 7.289861 GGTTGTCACCAGACTTATAAGTCACC 61.290 46.154 35.55 28.29 46.91 4.02
3330 4054 5.638234 GGTTGTCACCAGACTTATAAGTCAC 59.362 44.000 35.55 26.94 46.91 3.67
3331 4055 5.790593 GGTTGTCACCAGACTTATAAGTCA 58.209 41.667 35.55 19.35 46.91 3.41
3345 4069 1.358759 CGCCTGTTTGGTTGTCACC 59.641 57.895 0.00 0.00 44.56 4.02
3346 4070 0.248458 CACGCCTGTTTGGTTGTCAC 60.248 55.000 0.00 0.00 38.35 3.67
3347 4071 0.393132 TCACGCCTGTTTGGTTGTCA 60.393 50.000 0.00 0.00 38.35 3.58
3348 4072 0.028902 GTCACGCCTGTTTGGTTGTC 59.971 55.000 0.00 0.00 38.35 3.18
3349 4073 0.393808 AGTCACGCCTGTTTGGTTGT 60.394 50.000 0.00 0.00 38.35 3.32
3350 4074 0.738389 AAGTCACGCCTGTTTGGTTG 59.262 50.000 0.00 0.00 38.35 3.77
3351 4075 2.335316 TAAGTCACGCCTGTTTGGTT 57.665 45.000 0.00 0.00 38.35 3.67
3352 4076 2.561478 ATAAGTCACGCCTGTTTGGT 57.439 45.000 0.00 0.00 38.35 3.67
3353 4077 4.000988 ACTTATAAGTCACGCCTGTTTGG 58.999 43.478 12.50 0.00 32.86 3.28
3370 4094 8.867097 TCAGGTGACTTAAAACTAGTGACTTAT 58.133 33.333 0.00 0.00 40.21 1.73
3371 4095 8.139989 GTCAGGTGACTTAAAACTAGTGACTTA 58.860 37.037 0.00 0.00 41.65 2.24
3372 4096 6.985059 GTCAGGTGACTTAAAACTAGTGACTT 59.015 38.462 0.00 0.00 41.65 3.01
3373 4097 6.514063 GTCAGGTGACTTAAAACTAGTGACT 58.486 40.000 0.00 0.00 41.65 3.41
3374 4098 6.766452 GTCAGGTGACTTAAAACTAGTGAC 57.234 41.667 0.00 0.00 41.65 3.67
3404 4128 5.945466 TTGGTTTTAATAAGTCACCCGAC 57.055 39.130 0.00 0.00 42.95 4.79
3405 4129 8.632906 TTATTTGGTTTTAATAAGTCACCCGA 57.367 30.769 0.00 0.00 0.00 5.14
3406 4130 7.486870 GCTTATTTGGTTTTAATAAGTCACCCG 59.513 37.037 13.70 0.00 43.02 5.28
3407 4131 7.762615 GGCTTATTTGGTTTTAATAAGTCACCC 59.237 37.037 12.54 5.20 44.09 4.61
3408 4132 7.762615 GGGCTTATTTGGTTTTAATAAGTCACC 59.237 37.037 16.93 12.40 45.40 4.02
3409 4133 8.528643 AGGGCTTATTTGGTTTTAATAAGTCAC 58.471 33.333 16.93 10.68 45.40 3.67
3410 4134 8.658840 AGGGCTTATTTGGTTTTAATAAGTCA 57.341 30.769 16.93 0.00 45.40 3.41
3417 4141 8.755028 GGATTCTTAGGGCTTATTTGGTTTTAA 58.245 33.333 0.00 0.00 0.00 1.52
3418 4142 8.119891 AGGATTCTTAGGGCTTATTTGGTTTTA 58.880 33.333 0.00 0.00 0.00 1.52
3419 4143 6.959954 AGGATTCTTAGGGCTTATTTGGTTTT 59.040 34.615 0.00 0.00 0.00 2.43
3420 4144 6.503041 AGGATTCTTAGGGCTTATTTGGTTT 58.497 36.000 0.00 0.00 0.00 3.27
3421 4145 6.092346 AGGATTCTTAGGGCTTATTTGGTT 57.908 37.500 0.00 0.00 0.00 3.67
3422 4146 5.734031 AGGATTCTTAGGGCTTATTTGGT 57.266 39.130 0.00 0.00 0.00 3.67
3423 4147 5.536538 GGAAGGATTCTTAGGGCTTATTTGG 59.463 44.000 0.00 0.00 46.56 3.28
3424 4148 6.368805 AGGAAGGATTCTTAGGGCTTATTTG 58.631 40.000 0.00 0.00 46.56 2.32
3425 4149 6.598427 AGGAAGGATTCTTAGGGCTTATTT 57.402 37.500 0.00 0.00 46.56 1.40
3426 4150 5.221742 CGAGGAAGGATTCTTAGGGCTTATT 60.222 44.000 0.00 0.00 46.56 1.40
3427 4151 4.284746 CGAGGAAGGATTCTTAGGGCTTAT 59.715 45.833 0.00 0.00 46.56 1.73
3428 4152 3.641906 CGAGGAAGGATTCTTAGGGCTTA 59.358 47.826 0.00 0.00 46.56 3.09
3429 4153 2.436173 CGAGGAAGGATTCTTAGGGCTT 59.564 50.000 0.00 0.00 46.56 4.35
3430 4154 2.043227 CGAGGAAGGATTCTTAGGGCT 58.957 52.381 0.00 0.00 46.56 5.19
3431 4155 1.070914 CCGAGGAAGGATTCTTAGGGC 59.929 57.143 0.00 0.00 46.56 5.19
3434 4158 5.770663 TCTCATACCGAGGAAGGATTCTTAG 59.229 44.000 0.00 0.00 46.56 2.18
3435 4159 5.702266 TCTCATACCGAGGAAGGATTCTTA 58.298 41.667 0.00 0.00 46.56 2.10
3436 4160 4.547671 TCTCATACCGAGGAAGGATTCTT 58.452 43.478 0.00 0.00 46.56 2.52
3437 4161 4.186077 TCTCATACCGAGGAAGGATTCT 57.814 45.455 0.00 0.00 46.56 2.40
3438 4162 4.342665 ACTTCTCATACCGAGGAAGGATTC 59.657 45.833 0.00 0.00 46.67 2.52
3439 4163 4.290942 ACTTCTCATACCGAGGAAGGATT 58.709 43.478 0.00 0.00 42.55 3.01
3440 4164 3.917300 ACTTCTCATACCGAGGAAGGAT 58.083 45.455 0.00 0.00 42.55 3.24
3441 4165 3.383698 ACTTCTCATACCGAGGAAGGA 57.616 47.619 0.00 0.00 42.55 3.36
3442 4166 4.888239 TCTTACTTCTCATACCGAGGAAGG 59.112 45.833 0.00 0.00 42.55 3.46
3443 4167 6.642707 ATCTTACTTCTCATACCGAGGAAG 57.357 41.667 0.00 0.00 42.55 3.46
3444 4168 7.942894 TGATATCTTACTTCTCATACCGAGGAA 59.057 37.037 3.98 0.00 42.55 3.36
3445 4169 7.459234 TGATATCTTACTTCTCATACCGAGGA 58.541 38.462 3.98 0.00 42.55 3.71
3446 4170 7.689446 TGATATCTTACTTCTCATACCGAGG 57.311 40.000 3.98 0.00 42.55 4.63
3449 4173 9.360093 GGATTTGATATCTTACTTCTCATACCG 57.640 37.037 3.98 0.00 0.00 4.02
3450 4174 9.360093 CGGATTTGATATCTTACTTCTCATACC 57.640 37.037 3.98 0.00 0.00 2.73
3451 4175 8.865001 GCGGATTTGATATCTTACTTCTCATAC 58.135 37.037 3.98 0.00 0.00 2.39
3452 4176 7.755373 CGCGGATTTGATATCTTACTTCTCATA 59.245 37.037 0.00 0.00 0.00 2.15
3453 4177 6.587990 CGCGGATTTGATATCTTACTTCTCAT 59.412 38.462 0.00 0.00 0.00 2.90
3454 4178 5.920840 CGCGGATTTGATATCTTACTTCTCA 59.079 40.000 0.00 0.00 0.00 3.27
3455 4179 5.346281 CCGCGGATTTGATATCTTACTTCTC 59.654 44.000 24.07 0.00 0.00 2.87
3456 4180 5.010719 TCCGCGGATTTGATATCTTACTTCT 59.989 40.000 27.28 0.00 0.00 2.85
3457 4181 5.227908 TCCGCGGATTTGATATCTTACTTC 58.772 41.667 27.28 0.00 0.00 3.01
3458 4182 5.209818 TCCGCGGATTTGATATCTTACTT 57.790 39.130 27.28 0.00 0.00 2.24
3459 4183 4.281182 ACTCCGCGGATTTGATATCTTACT 59.719 41.667 31.19 0.00 0.00 2.24
3460 4184 4.557205 ACTCCGCGGATTTGATATCTTAC 58.443 43.478 31.19 0.00 0.00 2.34
3461 4185 4.866508 ACTCCGCGGATTTGATATCTTA 57.133 40.909 31.19 0.27 0.00 2.10
3462 4186 3.753294 ACTCCGCGGATTTGATATCTT 57.247 42.857 31.19 0.00 0.00 2.40
3463 4187 3.322254 AGAACTCCGCGGATTTGATATCT 59.678 43.478 32.30 20.59 0.00 1.98
3464 4188 3.654414 AGAACTCCGCGGATTTGATATC 58.346 45.455 32.30 18.77 0.00 1.63
3465 4189 3.555168 GGAGAACTCCGCGGATTTGATAT 60.555 47.826 32.30 16.41 40.36 1.63
3466 4190 2.223971 GGAGAACTCCGCGGATTTGATA 60.224 50.000 32.30 7.93 40.36 2.15
3467 4191 1.473434 GGAGAACTCCGCGGATTTGAT 60.473 52.381 32.30 21.04 40.36 2.57
3468 4192 0.108329 GGAGAACTCCGCGGATTTGA 60.108 55.000 32.30 9.53 40.36 2.69
3469 4193 2.384203 GGAGAACTCCGCGGATTTG 58.616 57.895 32.30 21.96 40.36 2.32
3470 4194 4.934989 GGAGAACTCCGCGGATTT 57.065 55.556 31.19 29.66 40.36 2.17
3479 4203 4.679373 TCATTGGCTCATAGGAGAACTC 57.321 45.455 8.95 0.00 44.26 3.01
3480 4204 5.643421 AATCATTGGCTCATAGGAGAACT 57.357 39.130 8.95 0.00 44.26 3.01
3481 4205 5.411053 GCTAATCATTGGCTCATAGGAGAAC 59.589 44.000 8.95 0.41 44.26 3.01
3482 4206 5.309020 AGCTAATCATTGGCTCATAGGAGAA 59.691 40.000 8.95 0.00 44.83 2.87
3483 4207 4.842948 AGCTAATCATTGGCTCATAGGAGA 59.157 41.667 8.95 0.00 44.83 3.71
3484 4208 5.163281 AGCTAATCATTGGCTCATAGGAG 57.837 43.478 1.62 0.00 44.83 3.69
3493 4217 2.290093 GAGTGCAGAGCTAATCATTGGC 59.710 50.000 0.00 0.00 37.42 4.52
3494 4218 3.538591 TGAGTGCAGAGCTAATCATTGG 58.461 45.455 0.00 0.00 0.00 3.16
3495 4219 4.634883 AGTTGAGTGCAGAGCTAATCATTG 59.365 41.667 0.00 0.00 0.00 2.82
3496 4220 4.841422 AGTTGAGTGCAGAGCTAATCATT 58.159 39.130 0.00 0.00 0.00 2.57
3497 4221 4.484537 AGTTGAGTGCAGAGCTAATCAT 57.515 40.909 0.00 0.00 0.00 2.45
3498 4222 3.969287 AGTTGAGTGCAGAGCTAATCA 57.031 42.857 0.00 0.00 0.00 2.57
3499 4223 6.727824 TTTTAGTTGAGTGCAGAGCTAATC 57.272 37.500 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.