Multiple sequence alignment - TraesCS5A01G129300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G129300 chr5A 100.000 4974 0 0 1 4974 290112323 290117296 0.000000e+00 9186.0
1 TraesCS5A01G129300 chr5A 92.308 676 44 4 4300 4970 315284153 315284825 0.000000e+00 953.0
2 TraesCS5A01G129300 chr5A 87.946 672 73 6 4303 4967 37085078 37085748 0.000000e+00 785.0
3 TraesCS5A01G129300 chr5D 92.864 2929 149 27 200 3087 217420659 217423568 0.000000e+00 4196.0
4 TraesCS5A01G129300 chr5D 93.078 1098 62 9 3213 4302 217423577 217424668 0.000000e+00 1594.0
5 TraesCS5A01G129300 chr5D 92.593 675 47 2 4302 4973 434005715 434005041 0.000000e+00 966.0
6 TraesCS5A01G129300 chr5D 92.319 677 43 6 4301 4971 43011603 43012276 0.000000e+00 953.0
7 TraesCS5A01G129300 chr5D 92.208 154 8 4 3083 3235 299406285 299406135 1.080000e-51 215.0
8 TraesCS5A01G129300 chr5D 88.525 61 6 1 62 122 217420289 217420348 6.910000e-09 73.1
9 TraesCS5A01G129300 chr5B 95.604 1092 43 3 3213 4302 233453905 233454993 0.000000e+00 1746.0
10 TraesCS5A01G129300 chr5B 92.944 1148 66 4 292 1439 233445726 233446858 0.000000e+00 1657.0
11 TraesCS5A01G129300 chr5B 90.933 761 42 6 1501 2235 233447073 233447832 0.000000e+00 998.0
12 TraesCS5A01G129300 chr5B 96.743 307 10 0 2226 2532 233447851 233448157 3.430000e-141 512.0
13 TraesCS5A01G129300 chr5B 94.810 289 13 1 2803 3089 233453616 233453904 2.730000e-122 449.0
14 TraesCS5A01G129300 chr5B 91.635 263 20 2 2554 2815 233448239 233448500 3.660000e-96 363.0
15 TraesCS5A01G129300 chr7D 90.149 670 62 4 4300 4967 43138020 43138687 0.000000e+00 869.0
16 TraesCS5A01G129300 chr7D 89.583 672 60 8 4300 4967 277559171 277559836 0.000000e+00 845.0
17 TraesCS5A01G129300 chr7D 87.952 83 9 1 3502 3584 536458481 536458400 4.100000e-16 97.1
18 TraesCS5A01G129300 chr6B 88.972 671 64 8 4301 4967 662251842 662252506 0.000000e+00 821.0
19 TraesCS5A01G129300 chr7A 87.408 683 76 10 4297 4973 35690387 35689709 0.000000e+00 776.0
20 TraesCS5A01G129300 chr4A 87.130 676 75 10 4296 4967 346285687 346286354 0.000000e+00 756.0
21 TraesCS5A01G129300 chr2A 98.450 129 2 0 3087 3215 74829059 74829187 1.390000e-55 228.0
22 TraesCS5A01G129300 chr1A 94.040 151 6 3 3070 3218 401773518 401773667 5.010000e-55 226.0
23 TraesCS5A01G129300 chr4D 94.964 139 7 0 3080 3218 289405103 289405241 8.380000e-53 219.0
24 TraesCS5A01G129300 chr3D 94.964 139 7 0 3080 3218 148770022 148770160 8.380000e-53 219.0
25 TraesCS5A01G129300 chr3D 95.000 140 6 1 3081 3220 427451538 427451676 8.380000e-53 219.0
26 TraesCS5A01G129300 chr3D 95.000 140 5 2 3087 3225 496172883 496172745 8.380000e-53 219.0
27 TraesCS5A01G129300 chr3B 95.000 140 5 2 3083 3221 630594077 630594215 8.380000e-53 219.0
28 TraesCS5A01G129300 chr3A 94.964 139 7 0 3080 3218 579570876 579571014 8.380000e-53 219.0
29 TraesCS5A01G129300 chr4B 97.959 49 1 0 3999 4047 1183143 1183191 8.870000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G129300 chr5A 290112323 290117296 4973 False 9186.000000 9186 100.00000 1 4974 1 chr5A.!!$F2 4973
1 TraesCS5A01G129300 chr5A 315284153 315284825 672 False 953.000000 953 92.30800 4300 4970 1 chr5A.!!$F3 670
2 TraesCS5A01G129300 chr5A 37085078 37085748 670 False 785.000000 785 87.94600 4303 4967 1 chr5A.!!$F1 664
3 TraesCS5A01G129300 chr5D 217420289 217424668 4379 False 1954.366667 4196 91.48900 62 4302 3 chr5D.!!$F2 4240
4 TraesCS5A01G129300 chr5D 434005041 434005715 674 True 966.000000 966 92.59300 4302 4973 1 chr5D.!!$R2 671
5 TraesCS5A01G129300 chr5D 43011603 43012276 673 False 953.000000 953 92.31900 4301 4971 1 chr5D.!!$F1 670
6 TraesCS5A01G129300 chr5B 233453616 233454993 1377 False 1097.500000 1746 95.20700 2803 4302 2 chr5B.!!$F2 1499
7 TraesCS5A01G129300 chr5B 233445726 233448500 2774 False 882.500000 1657 93.06375 292 2815 4 chr5B.!!$F1 2523
8 TraesCS5A01G129300 chr7D 43138020 43138687 667 False 869.000000 869 90.14900 4300 4967 1 chr7D.!!$F1 667
9 TraesCS5A01G129300 chr7D 277559171 277559836 665 False 845.000000 845 89.58300 4300 4967 1 chr7D.!!$F2 667
10 TraesCS5A01G129300 chr6B 662251842 662252506 664 False 821.000000 821 88.97200 4301 4967 1 chr6B.!!$F1 666
11 TraesCS5A01G129300 chr7A 35689709 35690387 678 True 776.000000 776 87.40800 4297 4973 1 chr7A.!!$R1 676
12 TraesCS5A01G129300 chr4A 346285687 346286354 667 False 756.000000 756 87.13000 4296 4967 1 chr4A.!!$F1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1258 0.039074 AGCAAACGAGGTCAGAGACG 60.039 55.0 0.0 0.0 32.65 4.18 F
1570 2037 0.032952 TCTACCTTGTCACACGCACC 59.967 55.0 0.0 0.0 0.00 5.01 F
1810 2278 0.960364 TGCCCGAGCAGTGGATTTTC 60.960 55.0 0.0 0.0 46.52 2.29 F
3386 3981 0.034767 TCTGCTCCTGATGGCTTTGG 60.035 55.0 0.0 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 2404 0.393077 AGACCACGGAACAGACCAAG 59.607 55.000 0.00 0.00 0.00 3.61 R
2381 2904 1.505425 AGTTTTCGGAACACCGTAGC 58.495 50.000 8.46 1.53 45.96 3.58 R
3727 4322 1.608283 GGACTGACCAGGAAGAAACCG 60.608 57.143 0.00 0.00 38.79 4.44 R
4760 5385 0.905337 CCGAACTCCAGAACTCCCCT 60.905 60.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.869649 AAACTAATGGCATTGGAATACCC 57.130 39.130 27.45 0.00 34.81 3.69
43 44 4.814224 ACTAATGGCATTGGAATACCCT 57.186 40.909 27.45 2.89 35.38 4.34
44 45 5.142806 ACTAATGGCATTGGAATACCCTT 57.857 39.130 27.45 2.17 35.38 3.95
45 46 5.528337 ACTAATGGCATTGGAATACCCTTT 58.472 37.500 27.45 1.47 35.38 3.11
46 47 6.678547 ACTAATGGCATTGGAATACCCTTTA 58.321 36.000 27.45 0.73 35.38 1.85
47 48 6.777580 ACTAATGGCATTGGAATACCCTTTAG 59.222 38.462 27.45 12.34 38.37 1.85
48 49 3.909732 TGGCATTGGAATACCCTTTAGG 58.090 45.455 0.00 0.00 43.78 2.69
49 50 3.529734 TGGCATTGGAATACCCTTTAGGA 59.470 43.478 0.00 0.00 39.89 2.94
50 51 4.017037 TGGCATTGGAATACCCTTTAGGAA 60.017 41.667 0.00 0.00 39.89 3.36
51 52 4.584743 GGCATTGGAATACCCTTTAGGAAG 59.415 45.833 0.00 0.00 39.89 3.46
52 53 5.445964 GCATTGGAATACCCTTTAGGAAGA 58.554 41.667 0.00 0.00 39.89 2.87
53 54 5.891551 GCATTGGAATACCCTTTAGGAAGAA 59.108 40.000 0.00 0.00 39.89 2.52
54 55 6.379988 GCATTGGAATACCCTTTAGGAAGAAA 59.620 38.462 0.00 0.00 39.89 2.52
55 56 7.069950 GCATTGGAATACCCTTTAGGAAGAAAT 59.930 37.037 0.00 0.00 39.89 2.17
56 57 8.633561 CATTGGAATACCCTTTAGGAAGAAATC 58.366 37.037 0.00 0.00 39.89 2.17
57 58 6.669631 TGGAATACCCTTTAGGAAGAAATCC 58.330 40.000 0.00 0.00 41.55 3.01
59 60 7.630127 TGGAATACCCTTTAGGAAGAAATCCTA 59.370 37.037 0.07 0.07 46.12 2.94
109 110 2.882137 TGGTACTTCCGCTTTCTTTTGG 59.118 45.455 0.00 0.00 39.52 3.28
110 111 3.143728 GGTACTTCCGCTTTCTTTTGGA 58.856 45.455 0.00 0.00 0.00 3.53
115 116 2.227194 TCCGCTTTCTTTTGGAAGGAC 58.773 47.619 0.00 0.00 33.52 3.85
122 123 1.087501 CTTTTGGAAGGACCGCTAGC 58.912 55.000 4.06 4.06 42.61 3.42
123 124 0.690762 TTTTGGAAGGACCGCTAGCT 59.309 50.000 13.93 0.00 42.61 3.32
124 125 0.690762 TTTGGAAGGACCGCTAGCTT 59.309 50.000 13.93 0.00 42.61 3.74
125 126 0.690762 TTGGAAGGACCGCTAGCTTT 59.309 50.000 13.93 0.00 42.61 3.51
126 127 0.249398 TGGAAGGACCGCTAGCTTTC 59.751 55.000 13.93 8.47 42.61 2.62
127 128 0.537653 GGAAGGACCGCTAGCTTTCT 59.462 55.000 13.93 0.20 0.00 2.52
128 129 1.066071 GGAAGGACCGCTAGCTTTCTT 60.066 52.381 13.93 9.71 0.00 2.52
129 130 2.615747 GGAAGGACCGCTAGCTTTCTTT 60.616 50.000 13.93 10.95 0.00 2.52
130 131 2.861147 AGGACCGCTAGCTTTCTTTT 57.139 45.000 13.93 0.00 0.00 2.27
131 132 2.427506 AGGACCGCTAGCTTTCTTTTG 58.572 47.619 13.93 0.00 0.00 2.44
132 133 1.468914 GGACCGCTAGCTTTCTTTTGG 59.531 52.381 13.93 6.32 0.00 3.28
133 134 2.423577 GACCGCTAGCTTTCTTTTGGA 58.576 47.619 13.93 0.00 0.00 3.53
134 135 2.812011 GACCGCTAGCTTTCTTTTGGAA 59.188 45.455 13.93 0.00 0.00 3.53
135 136 2.814336 ACCGCTAGCTTTCTTTTGGAAG 59.186 45.455 13.93 0.00 35.16 3.46
136 137 2.162408 CCGCTAGCTTTCTTTTGGAAGG 59.838 50.000 13.93 0.00 35.16 3.46
139 140 4.201861 CGCTAGCTTTCTTTTGGAAGGATC 60.202 45.833 13.93 0.00 33.52 3.36
142 143 5.911378 AGCTTTCTTTTGGAAGGATCATC 57.089 39.130 0.00 0.00 33.52 2.92
143 144 4.708909 AGCTTTCTTTTGGAAGGATCATCC 59.291 41.667 9.31 9.31 33.52 3.51
164 463 5.094387 TCCTCCTTCATATAATGGTCCCTC 58.906 45.833 0.00 0.00 0.00 4.30
176 475 3.988976 TGGTCCCTCTCAAGATTCAAG 57.011 47.619 0.00 0.00 0.00 3.02
190 489 3.197766 AGATTCAAGATGGTACTTCCGCA 59.802 43.478 0.00 0.00 39.52 5.69
191 490 3.627395 TTCAAGATGGTACTTCCGCAT 57.373 42.857 0.00 0.00 39.52 4.73
192 491 3.627395 TCAAGATGGTACTTCCGCATT 57.373 42.857 0.00 0.00 39.52 3.56
193 492 3.531538 TCAAGATGGTACTTCCGCATTC 58.468 45.455 0.00 0.00 39.52 2.67
194 493 3.197766 TCAAGATGGTACTTCCGCATTCT 59.802 43.478 0.00 0.00 39.52 2.40
195 494 3.914426 AGATGGTACTTCCGCATTCTT 57.086 42.857 0.00 0.00 39.52 2.52
196 495 4.222124 AGATGGTACTTCCGCATTCTTT 57.778 40.909 0.00 0.00 39.52 2.52
197 496 3.941483 AGATGGTACTTCCGCATTCTTTG 59.059 43.478 0.00 0.00 39.52 2.77
198 497 2.432444 TGGTACTTCCGCATTCTTTGG 58.568 47.619 0.00 0.00 39.52 3.28
199 498 1.743394 GGTACTTCCGCATTCTTTGGG 59.257 52.381 0.00 0.00 37.99 4.12
200 499 2.617021 GGTACTTCCGCATTCTTTGGGA 60.617 50.000 0.00 0.00 40.62 4.37
201 500 1.826385 ACTTCCGCATTCTTTGGGAG 58.174 50.000 0.00 0.00 40.62 4.30
202 501 1.098050 CTTCCGCATTCTTTGGGAGG 58.902 55.000 0.00 0.00 40.62 4.30
203 502 0.695924 TTCCGCATTCTTTGGGAGGA 59.304 50.000 0.00 0.00 40.62 3.71
204 503 0.918983 TCCGCATTCTTTGGGAGGAT 59.081 50.000 0.00 0.00 40.62 3.24
205 504 1.134098 TCCGCATTCTTTGGGAGGATC 60.134 52.381 0.00 0.00 40.62 3.36
222 521 5.749462 GAGGATCCCCACCTTCATATAATG 58.251 45.833 8.55 0.00 37.93 1.90
223 522 4.541714 AGGATCCCCACCTTCATATAATGG 59.458 45.833 8.55 0.00 33.55 3.16
224 523 4.292306 GGATCCCCACCTTCATATAATGGT 59.708 45.833 0.00 0.00 0.00 3.55
225 524 4.993705 TCCCCACCTTCATATAATGGTC 57.006 45.455 0.00 0.00 0.00 4.02
226 525 3.655777 TCCCCACCTTCATATAATGGTCC 59.344 47.826 0.00 0.00 0.00 4.46
227 526 3.245264 CCCCACCTTCATATAATGGTCCC 60.245 52.174 0.00 0.00 0.00 4.46
228 527 3.657727 CCCACCTTCATATAATGGTCCCT 59.342 47.826 0.00 0.00 0.00 4.20
229 528 4.106341 CCCACCTTCATATAATGGTCCCTT 59.894 45.833 0.00 0.00 0.00 3.95
230 529 5.400189 CCCACCTTCATATAATGGTCCCTTT 60.400 44.000 0.00 0.00 0.00 3.11
231 530 5.770162 CCACCTTCATATAATGGTCCCTTTC 59.230 44.000 0.00 0.00 0.00 2.62
232 531 6.364701 CACCTTCATATAATGGTCCCTTTCA 58.635 40.000 0.00 0.00 0.00 2.69
233 532 6.833416 CACCTTCATATAATGGTCCCTTTCAA 59.167 38.462 0.00 0.00 0.00 2.69
234 533 7.341769 CACCTTCATATAATGGTCCCTTTCAAA 59.658 37.037 0.00 0.00 0.00 2.69
235 534 7.561356 ACCTTCATATAATGGTCCCTTTCAAAG 59.439 37.037 0.00 0.00 0.00 2.77
236 535 7.561356 CCTTCATATAATGGTCCCTTTCAAAGT 59.439 37.037 0.00 0.00 0.00 2.66
237 536 8.893563 TTCATATAATGGTCCCTTTCAAAGTT 57.106 30.769 0.00 0.00 0.00 2.66
238 537 8.519799 TCATATAATGGTCCCTTTCAAAGTTC 57.480 34.615 0.00 0.00 0.00 3.01
239 538 8.112822 TCATATAATGGTCCCTTTCAAAGTTCA 58.887 33.333 0.00 0.00 0.00 3.18
240 539 8.748412 CATATAATGGTCCCTTTCAAAGTTCAA 58.252 33.333 0.00 0.00 0.00 2.69
241 540 5.535753 AATGGTCCCTTTCAAAGTTCAAG 57.464 39.130 0.00 0.00 0.00 3.02
242 541 3.295973 TGGTCCCTTTCAAAGTTCAAGG 58.704 45.455 0.00 2.66 37.42 3.61
243 542 3.296854 GGTCCCTTTCAAAGTTCAAGGT 58.703 45.455 0.00 0.00 36.12 3.50
244 543 3.068165 GGTCCCTTTCAAAGTTCAAGGTG 59.932 47.826 0.00 1.61 36.12 4.00
245 544 3.068165 GTCCCTTTCAAAGTTCAAGGTGG 59.932 47.826 0.00 0.00 36.12 4.61
246 545 3.031013 CCCTTTCAAAGTTCAAGGTGGT 58.969 45.455 0.00 0.00 36.12 4.16
247 546 4.079672 TCCCTTTCAAAGTTCAAGGTGGTA 60.080 41.667 0.00 0.00 36.12 3.25
248 547 4.037565 CCCTTTCAAAGTTCAAGGTGGTAC 59.962 45.833 0.00 0.00 36.12 3.34
249 548 4.887655 CCTTTCAAAGTTCAAGGTGGTACT 59.112 41.667 0.00 0.00 33.57 2.73
250 549 5.359860 CCTTTCAAAGTTCAAGGTGGTACTT 59.640 40.000 0.00 0.00 33.57 2.24
251 550 6.445357 TTTCAAAGTTCAAGGTGGTACTTC 57.555 37.500 0.00 0.00 30.92 3.01
252 551 4.457466 TCAAAGTTCAAGGTGGTACTTCC 58.543 43.478 0.00 0.00 30.92 3.46
253 552 2.833631 AGTTCAAGGTGGTACTTCCG 57.166 50.000 0.00 0.00 39.52 4.30
254 553 1.154197 GTTCAAGGTGGTACTTCCGC 58.846 55.000 0.00 0.00 45.27 5.54
262 561 4.991001 AAGGTGGTACTTCCGCATTCTTTT 60.991 41.667 0.00 0.00 45.78 2.27
265 564 2.817844 GGTACTTCCGCATTCTTTTGGT 59.182 45.455 0.00 0.00 0.00 3.67
271 570 5.010617 ACTTCCGCATTCTTTTGGTATTTGT 59.989 36.000 0.00 0.00 0.00 2.83
308 607 1.338769 ACTATGGTTCCACGTTGAGCC 60.339 52.381 14.64 14.64 36.27 4.70
364 663 1.787012 GCATGTTGCCCTTTCTTGTG 58.213 50.000 0.00 0.00 37.42 3.33
408 708 8.292448 TGCTTGTGCTTATTCTAGAAGAAAAAG 58.708 33.333 13.23 13.76 37.68 2.27
446 746 6.090129 ACAAAATTACATTCATGGCACGTAC 58.910 36.000 0.00 0.00 0.00 3.67
451 751 0.461339 ATTCATGGCACGTACGGGTC 60.461 55.000 16.82 16.82 0.00 4.46
464 764 3.190118 CGTACGGGTCCCAATAGATCTAC 59.810 52.174 9.12 0.00 0.00 2.59
482 782 1.227556 CCCGGCGAAATCCACTAGG 60.228 63.158 9.30 0.00 0.00 3.02
499 799 2.793946 GCCACTGCCACATAAGCG 59.206 61.111 0.00 0.00 0.00 4.68
554 854 3.259314 ATGGCAGCCACCACCTCA 61.259 61.111 19.10 0.00 44.17 3.86
683 983 1.310216 AAATGAGTTTACGGCCGGCC 61.310 55.000 36.69 36.69 0.00 6.13
804 1104 7.832503 ATCGGAATAATTTTCTGCTTTTTGG 57.167 32.000 0.00 0.00 0.00 3.28
805 1105 6.162777 TCGGAATAATTTTCTGCTTTTTGGG 58.837 36.000 0.00 0.00 0.00 4.12
851 1151 1.787056 GACGCGCGGTTCTTTTTCG 60.787 57.895 35.22 1.16 0.00 3.46
866 1166 2.386661 TTTCGCTCCTCCATCAGAAC 57.613 50.000 0.00 0.00 0.00 3.01
956 1256 0.319900 GCAGCAAACGAGGTCAGAGA 60.320 55.000 0.00 0.00 0.00 3.10
957 1257 1.423395 CAGCAAACGAGGTCAGAGAC 58.577 55.000 0.00 0.00 0.00 3.36
958 1258 0.039074 AGCAAACGAGGTCAGAGACG 60.039 55.000 0.00 0.00 32.65 4.18
959 1259 0.318784 GCAAACGAGGTCAGAGACGT 60.319 55.000 0.00 0.00 40.64 4.34
1086 1386 4.767255 CTGGTCGGGCTGGTGCTC 62.767 72.222 0.00 0.00 39.59 4.26
1227 1527 2.447714 GGTCAGCTCCATCCCCTCC 61.448 68.421 0.00 0.00 0.00 4.30
1232 1532 2.705410 CTCCATCCCCTCCCTCCA 59.295 66.667 0.00 0.00 0.00 3.86
1233 1537 1.461075 CTCCATCCCCTCCCTCCAG 60.461 68.421 0.00 0.00 0.00 3.86
1350 1654 4.172512 CTGATGGGGCAGCTCGCT 62.173 66.667 7.85 0.00 41.91 4.93
1407 1711 2.517919 GGCACCTCCATCATCCCC 59.482 66.667 0.00 0.00 34.01 4.81
1422 1726 1.648116 TCCCCTACAGTAACCACACC 58.352 55.000 0.00 0.00 0.00 4.16
1442 1906 5.474876 ACACCATTCATTTCTCTTCCTGTTC 59.525 40.000 0.00 0.00 0.00 3.18
1448 1912 8.954350 CATTCATTTCTCTTCCTGTTCTACAAT 58.046 33.333 0.00 0.00 0.00 2.71
1475 1942 6.647334 TCTACCTTTTGCATCAACAATCAA 57.353 33.333 0.00 0.00 0.00 2.57
1492 1959 8.863049 CAACAATCAACCTTTCATAACTATTGC 58.137 33.333 0.00 0.00 0.00 3.56
1570 2037 0.032952 TCTACCTTGTCACACGCACC 59.967 55.000 0.00 0.00 0.00 5.01
1573 2040 1.525995 CCTTGTCACACGCACCCTT 60.526 57.895 0.00 0.00 0.00 3.95
1702 2170 2.427095 GCTGAATTAGGCGGATTTGGTT 59.573 45.455 0.00 0.00 0.00 3.67
1735 2203 3.660111 GCCTTCGCGTTTGGCTGT 61.660 61.111 24.13 0.00 43.05 4.40
1810 2278 0.960364 TGCCCGAGCAGTGGATTTTC 60.960 55.000 0.00 0.00 46.52 2.29
1854 2345 2.806608 ACTTGTTTGCTGGCTTCATG 57.193 45.000 0.00 0.00 0.00 3.07
1859 2350 2.223782 TGTTTGCTGGCTTCATGTTCAC 60.224 45.455 0.00 0.00 0.00 3.18
1869 2360 6.815089 TGGCTTCATGTTCACTTTTACAAAT 58.185 32.000 0.00 0.00 0.00 2.32
1876 2367 8.134895 TCATGTTCACTTTTACAAATTCTGGAC 58.865 33.333 0.00 0.00 0.00 4.02
1895 2386 1.948145 ACCGGTTTGTTTATGCGTTGA 59.052 42.857 0.00 0.00 0.00 3.18
1913 2404 1.887198 TGACAGGTCTCGGTTCTTCTC 59.113 52.381 0.65 0.00 0.00 2.87
1914 2405 2.164338 GACAGGTCTCGGTTCTTCTCT 58.836 52.381 0.00 0.00 0.00 3.10
1941 2432 2.028476 TGTTCCGTGGTCTACATGAAGG 60.028 50.000 0.00 0.00 38.41 3.46
2173 2666 5.475564 GGTTGAGTAATTTGCTGGTCCTTTA 59.524 40.000 0.00 0.00 0.00 1.85
2208 2703 4.466567 TGTGTAACGCTCATGTTTTCAG 57.533 40.909 0.00 0.00 42.39 3.02
2209 2704 3.874543 TGTGTAACGCTCATGTTTTCAGT 59.125 39.130 0.00 0.00 42.39 3.41
2319 2842 7.545965 ACATACATTTCCTTCTTCTACGAGTTG 59.454 37.037 0.00 0.00 0.00 3.16
2365 2888 6.827251 TGTTCTACTGGTAATCATACGTCTCT 59.173 38.462 0.00 0.00 32.51 3.10
2381 2904 5.282510 ACGTCTCTGTTCTGTTTTACTCTG 58.717 41.667 0.00 0.00 0.00 3.35
2385 2908 6.363896 GTCTCTGTTCTGTTTTACTCTGCTAC 59.636 42.308 0.00 0.00 0.00 3.58
2446 2969 6.714810 TCATGTTTTGCAGTATTACCTGAAGT 59.285 34.615 0.00 0.00 34.23 3.01
2552 3125 7.836479 ACTAGAGTACTTTACAACCAGAAGT 57.164 36.000 0.00 0.00 37.40 3.01
2565 3150 1.546323 CCAGAAGTGGTGCATTGTCCT 60.546 52.381 0.00 0.00 39.30 3.85
2574 3159 6.186957 AGTGGTGCATTGTCCTATTGATAAA 58.813 36.000 0.00 0.00 0.00 1.40
2716 3303 9.461312 TGTGAGTATTATGCCAAGTTTATTTCT 57.539 29.630 0.00 0.00 0.00 2.52
2788 3375 9.845740 TGAAAACTATTTATTCAGGCTATGCTA 57.154 29.630 0.00 0.00 0.00 3.49
2868 3455 3.256631 ACTGATGTCCAAACAGATTTGCC 59.743 43.478 0.00 0.00 43.38 4.52
2879 3466 2.079158 CAGATTTGCCGTGACTGATGT 58.921 47.619 0.00 0.00 0.00 3.06
2890 3477 4.327357 CCGTGACTGATGTCTACAAATGTC 59.673 45.833 0.00 0.00 43.29 3.06
2905 3492 9.862371 TCTACAAATGTCTCTCTCTTTCATTAC 57.138 33.333 0.00 0.00 0.00 1.89
2997 3584 4.892934 TGTAAGTCATTGCCCTCTGTTTTT 59.107 37.500 0.00 0.00 0.00 1.94
3049 3638 4.314740 AAGTTTGCCGCAGTTAATTCAA 57.685 36.364 0.00 0.00 0.00 2.69
3059 3648 5.512788 CCGCAGTTAATTCAATGATTGTGTC 59.487 40.000 4.93 0.00 0.00 3.67
3077 3666 9.769093 GATTGTGTCACATTTTTATACTACACC 57.231 33.333 6.48 0.00 36.12 4.16
3095 3690 8.653036 ACTACACCTCAATAATATACTCCCTC 57.347 38.462 0.00 0.00 0.00 4.30
3096 3691 6.936968 ACACCTCAATAATATACTCCCTCC 57.063 41.667 0.00 0.00 0.00 4.30
3097 3692 5.480772 ACACCTCAATAATATACTCCCTCCG 59.519 44.000 0.00 0.00 0.00 4.63
3098 3693 5.480772 CACCTCAATAATATACTCCCTCCGT 59.519 44.000 0.00 0.00 0.00 4.69
3099 3694 5.715753 ACCTCAATAATATACTCCCTCCGTC 59.284 44.000 0.00 0.00 0.00 4.79
3100 3695 5.952947 CCTCAATAATATACTCCCTCCGTCT 59.047 44.000 0.00 0.00 0.00 4.18
3101 3696 6.095720 CCTCAATAATATACTCCCTCCGTCTC 59.904 46.154 0.00 0.00 0.00 3.36
3102 3697 6.549242 TCAATAATATACTCCCTCCGTCTCA 58.451 40.000 0.00 0.00 0.00 3.27
3103 3698 7.008332 TCAATAATATACTCCCTCCGTCTCAA 58.992 38.462 0.00 0.00 0.00 3.02
3104 3699 7.507956 TCAATAATATACTCCCTCCGTCTCAAA 59.492 37.037 0.00 0.00 0.00 2.69
3105 3700 7.850935 ATAATATACTCCCTCCGTCTCAAAA 57.149 36.000 0.00 0.00 0.00 2.44
3106 3701 6.749036 AATATACTCCCTCCGTCTCAAAAT 57.251 37.500 0.00 0.00 0.00 1.82
3107 3702 6.749036 ATATACTCCCTCCGTCTCAAAATT 57.251 37.500 0.00 0.00 0.00 1.82
3108 3703 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
3109 3704 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
3110 3705 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
3111 3706 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
3112 3707 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
3113 3708 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
3114 3709 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
3115 3710 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
3116 3711 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
3117 3712 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
3118 3713 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
3119 3714 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
3120 3715 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
3121 3716 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
3122 3717 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
3133 3728 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
3134 3729 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
3136 3731 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
3137 3732 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
3144 3739 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
3145 3740 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
3146 3741 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
3147 3742 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
3148 3743 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
3149 3744 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
3150 3745 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3151 3746 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3152 3747 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3153 3748 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3154 3749 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3155 3750 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3156 3751 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3157 3752 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3158 3753 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
3205 3800 7.421530 TTCTAAGACAAGAATTTTGAGACGG 57.578 36.000 7.18 0.00 30.54 4.79
3206 3801 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
3207 3802 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
3208 3803 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
3209 3804 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
3210 3805 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
3211 3806 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
3229 3824 8.842280 CGGAGGGAGTATAAGCTTAATATAGAG 58.158 40.741 10.85 0.00 0.00 2.43
3306 3901 6.260936 CAGCTGACCAGGTATATTTAAACCAG 59.739 42.308 8.42 0.00 38.30 4.00
3322 3917 3.733443 ACCAGTGAAACATTTCTTGCC 57.267 42.857 5.97 0.00 41.43 4.52
3325 3920 3.318839 CCAGTGAAACATTTCTTGCCTCA 59.681 43.478 5.97 0.00 41.43 3.86
3333 3928 6.409524 AACATTTCTTGCCTCAATCTGAAA 57.590 33.333 0.00 0.00 0.00 2.69
3342 3937 3.733077 GCCTCAATCTGAAAATCCAAGCG 60.733 47.826 0.00 0.00 0.00 4.68
3370 3965 2.474410 AACCGCCTAGTTTTCCTCTG 57.526 50.000 0.00 0.00 0.00 3.35
3373 3968 1.646189 CGCCTAGTTTTCCTCTGCTC 58.354 55.000 0.00 0.00 0.00 4.26
3374 3969 1.740718 CGCCTAGTTTTCCTCTGCTCC 60.741 57.143 0.00 0.00 0.00 4.70
3386 3981 0.034767 TCTGCTCCTGATGGCTTTGG 60.035 55.000 0.00 0.00 0.00 3.28
3464 4059 0.409092 TGGCCCCATTGTTCATGAGT 59.591 50.000 0.00 0.00 34.31 3.41
3499 4094 1.654954 CCAGCACTTCTCTGCCATGC 61.655 60.000 0.00 0.00 37.96 4.06
3505 4100 1.891150 ACTTCTCTGCCATGCCTTTTG 59.109 47.619 0.00 0.00 0.00 2.44
3512 4107 3.071312 TCTGCCATGCCTTTTGTTGAAAT 59.929 39.130 0.00 0.00 0.00 2.17
3676 4271 1.349067 ACTCGGTTCCAGCCTACTTT 58.651 50.000 0.00 0.00 0.00 2.66
3727 4322 2.357952 AGGTTTCAGTTTTCTTGTCGCC 59.642 45.455 0.00 0.00 0.00 5.54
3757 4352 2.962421 CCTGGTCAGTCCTATTCCTCTC 59.038 54.545 0.00 0.00 37.07 3.20
3854 4449 5.700832 TCAAGTACAACATTTCTACAGGCAG 59.299 40.000 0.00 0.00 0.00 4.85
3903 4498 3.558931 TCCAGAGAGCAAAGACAAACA 57.441 42.857 0.00 0.00 0.00 2.83
3909 4504 4.037208 AGAGAGCAAAGACAAACACATTGG 59.963 41.667 0.00 0.00 43.66 3.16
3922 4517 3.079578 ACACATTGGAGTTGCAGATCAG 58.920 45.455 0.00 0.00 0.00 2.90
3937 4532 1.410517 GATCAGGACCAGCTCGATCAA 59.589 52.381 0.00 0.00 34.07 2.57
3945 4540 0.651551 CAGCTCGATCAAGAAGCAGC 59.348 55.000 8.53 0.00 0.00 5.25
4051 4646 1.532868 ACTAAAGCTTCTGCGCACAAG 59.467 47.619 19.66 19.66 45.42 3.16
4171 4769 7.848223 ATTTTCAGGGAGTTTTTGTTTTCAG 57.152 32.000 0.00 0.00 0.00 3.02
4172 4770 5.993748 TTCAGGGAGTTTTTGTTTTCAGT 57.006 34.783 0.00 0.00 0.00 3.41
4173 4771 5.576447 TCAGGGAGTTTTTGTTTTCAGTC 57.424 39.130 0.00 0.00 0.00 3.51
4174 4772 5.013547 TCAGGGAGTTTTTGTTTTCAGTCA 58.986 37.500 0.00 0.00 0.00 3.41
4175 4773 5.102313 CAGGGAGTTTTTGTTTTCAGTCAC 58.898 41.667 0.00 0.00 0.00 3.67
4176 4774 4.770010 AGGGAGTTTTTGTTTTCAGTCACA 59.230 37.500 0.00 0.00 0.00 3.58
4177 4775 4.862574 GGGAGTTTTTGTTTTCAGTCACAC 59.137 41.667 0.00 0.00 0.00 3.82
4178 4776 5.336451 GGGAGTTTTTGTTTTCAGTCACACT 60.336 40.000 0.00 0.00 0.00 3.55
4202 4803 1.521681 CTGGTTGCCGGCTAGCTAC 60.522 63.158 33.59 20.25 37.70 3.58
4388 5001 1.817520 TTCAGCACACACACACCCG 60.818 57.895 0.00 0.00 0.00 5.28
4402 5016 1.217882 CACCCGAGAGACACAACAAC 58.782 55.000 0.00 0.00 0.00 3.32
4404 5018 1.208535 ACCCGAGAGACACAACAACAA 59.791 47.619 0.00 0.00 0.00 2.83
4417 5031 6.930731 ACACAACAACAATACAAAGGTTCTT 58.069 32.000 0.00 0.00 0.00 2.52
4652 5277 1.716581 GACAGTTTGAAGAGAGCGTCG 59.283 52.381 0.00 0.00 0.00 5.12
4790 5416 0.673956 GGAGTTCGGCAAAGAGGTCC 60.674 60.000 0.00 0.00 0.00 4.46
4858 5484 0.591170 CTCCAAACGAATTGTGCGGT 59.409 50.000 0.00 0.00 37.32 5.68
4859 5485 1.001815 CTCCAAACGAATTGTGCGGTT 60.002 47.619 0.00 0.00 39.59 4.44
4928 5554 1.306226 GTAGAGGCCAGTCCCAGGT 60.306 63.158 5.01 0.00 34.51 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.443527 AGGGTATTCCAATGCCATTAGTTTTT 59.556 34.615 8.48 0.00 42.26 1.94
19 20 5.963865 AGGGTATTCCAATGCCATTAGTTTT 59.036 36.000 8.48 0.00 42.26 2.43
20 21 5.528337 AGGGTATTCCAATGCCATTAGTTT 58.472 37.500 8.48 0.00 42.26 2.66
21 22 5.142806 AGGGTATTCCAATGCCATTAGTT 57.857 39.130 8.48 0.00 42.26 2.24
22 23 4.814224 AGGGTATTCCAATGCCATTAGT 57.186 40.909 8.48 0.00 42.26 2.24
23 24 6.209391 CCTAAAGGGTATTCCAATGCCATTAG 59.791 42.308 16.25 16.25 42.82 1.73
24 25 6.074648 CCTAAAGGGTATTCCAATGCCATTA 58.925 40.000 6.73 5.61 42.82 1.90
25 26 4.901250 CCTAAAGGGTATTCCAATGCCATT 59.099 41.667 8.48 4.83 44.94 3.16
26 27 4.169856 TCCTAAAGGGTATTCCAATGCCAT 59.830 41.667 8.48 0.00 42.26 4.40
27 28 3.529734 TCCTAAAGGGTATTCCAATGCCA 59.470 43.478 8.48 0.00 42.26 4.92
28 29 4.178956 TCCTAAAGGGTATTCCAATGCC 57.821 45.455 0.00 0.00 40.06 4.40
29 30 5.445964 TCTTCCTAAAGGGTATTCCAATGC 58.554 41.667 0.00 0.00 38.24 3.56
30 31 7.954666 TTTCTTCCTAAAGGGTATTCCAATG 57.045 36.000 0.00 0.00 38.24 2.82
31 32 7.785028 GGATTTCTTCCTAAAGGGTATTCCAAT 59.215 37.037 0.00 0.00 41.78 3.16
32 33 7.123383 GGATTTCTTCCTAAAGGGTATTCCAA 58.877 38.462 0.00 0.00 41.78 3.53
33 34 6.669631 GGATTTCTTCCTAAAGGGTATTCCA 58.330 40.000 0.00 0.00 41.78 3.53
65 66 7.234166 ACCATCTTGAATCTTGAGTCCATTTTT 59.766 33.333 0.00 0.00 0.00 1.94
66 67 6.723052 ACCATCTTGAATCTTGAGTCCATTTT 59.277 34.615 0.00 0.00 0.00 1.82
67 68 6.251471 ACCATCTTGAATCTTGAGTCCATTT 58.749 36.000 0.00 0.00 0.00 2.32
68 69 5.824421 ACCATCTTGAATCTTGAGTCCATT 58.176 37.500 0.00 0.00 0.00 3.16
73 74 6.410540 GGAAGTACCATCTTGAATCTTGAGT 58.589 40.000 0.00 0.00 38.79 3.41
79 80 3.798202 AGCGGAAGTACCATCTTGAATC 58.202 45.455 0.00 0.00 38.90 2.52
109 110 2.388310 AAGAAAGCTAGCGGTCCTTC 57.612 50.000 9.55 8.48 0.00 3.46
110 111 2.814336 CAAAAGAAAGCTAGCGGTCCTT 59.186 45.455 9.55 8.75 0.00 3.36
115 116 2.162408 CCTTCCAAAAGAAAGCTAGCGG 59.838 50.000 9.55 1.59 34.14 5.52
135 136 7.205515 ACCATTATATGAAGGAGGATGATCC 57.794 40.000 2.46 2.46 39.89 3.36
136 137 7.278875 GGACCATTATATGAAGGAGGATGATC 58.721 42.308 0.00 0.00 0.00 2.92
139 140 5.490357 AGGGACCATTATATGAAGGAGGATG 59.510 44.000 0.00 0.00 0.00 3.51
142 143 5.097234 AGAGGGACCATTATATGAAGGAGG 58.903 45.833 0.00 0.00 0.00 4.30
143 144 5.782331 TGAGAGGGACCATTATATGAAGGAG 59.218 44.000 0.00 0.00 0.00 3.69
144 145 5.726560 TGAGAGGGACCATTATATGAAGGA 58.273 41.667 0.00 0.00 0.00 3.36
145 146 6.270927 TCTTGAGAGGGACCATTATATGAAGG 59.729 42.308 0.00 0.00 0.00 3.46
147 148 7.878621 ATCTTGAGAGGGACCATTATATGAA 57.121 36.000 0.00 0.00 0.00 2.57
148 149 7.513781 TGAATCTTGAGAGGGACCATTATATGA 59.486 37.037 0.00 0.00 0.00 2.15
153 452 5.726308 TCTTGAATCTTGAGAGGGACCATTA 59.274 40.000 0.00 0.00 0.00 1.90
155 454 4.107072 TCTTGAATCTTGAGAGGGACCAT 58.893 43.478 0.00 0.00 0.00 3.55
164 463 5.521735 CGGAAGTACCATCTTGAATCTTGAG 59.478 44.000 0.00 0.00 38.90 3.02
176 475 3.065371 CCAAAGAATGCGGAAGTACCATC 59.935 47.826 0.00 0.00 38.90 3.51
198 497 2.118403 TATGAAGGTGGGGATCCTCC 57.882 55.000 9.81 10.72 44.86 4.30
199 498 5.339530 CCATTATATGAAGGTGGGGATCCTC 60.340 48.000 12.58 8.60 33.76 3.71
200 499 4.541714 CCATTATATGAAGGTGGGGATCCT 59.458 45.833 12.58 0.00 36.81 3.24
201 500 4.292306 ACCATTATATGAAGGTGGGGATCC 59.708 45.833 1.92 1.92 34.27 3.36
202 501 5.501156 GACCATTATATGAAGGTGGGGATC 58.499 45.833 0.00 0.00 33.77 3.36
203 502 4.292306 GGACCATTATATGAAGGTGGGGAT 59.708 45.833 0.00 0.00 33.77 3.85
204 503 3.655777 GGACCATTATATGAAGGTGGGGA 59.344 47.826 0.00 0.00 33.77 4.81
205 504 3.245264 GGGACCATTATATGAAGGTGGGG 60.245 52.174 0.00 0.00 33.77 4.96
206 505 3.657727 AGGGACCATTATATGAAGGTGGG 59.342 47.826 0.00 0.00 33.77 4.61
207 506 5.324832 AAGGGACCATTATATGAAGGTGG 57.675 43.478 0.00 0.00 33.77 4.61
208 507 6.364701 TGAAAGGGACCATTATATGAAGGTG 58.635 40.000 0.00 0.00 33.77 4.00
209 508 6.590656 TGAAAGGGACCATTATATGAAGGT 57.409 37.500 0.00 0.00 37.00 3.50
210 509 7.561356 ACTTTGAAAGGGACCATTATATGAAGG 59.439 37.037 10.02 0.00 0.00 3.46
211 510 8.525290 ACTTTGAAAGGGACCATTATATGAAG 57.475 34.615 10.02 0.00 0.00 3.02
212 511 8.893563 AACTTTGAAAGGGACCATTATATGAA 57.106 30.769 10.02 0.00 0.00 2.57
213 512 8.112822 TGAACTTTGAAAGGGACCATTATATGA 58.887 33.333 10.02 0.00 0.00 2.15
214 513 8.292444 TGAACTTTGAAAGGGACCATTATATG 57.708 34.615 10.02 0.00 0.00 1.78
215 514 8.893563 TTGAACTTTGAAAGGGACCATTATAT 57.106 30.769 10.02 0.00 0.00 0.86
216 515 7.396055 CCTTGAACTTTGAAAGGGACCATTATA 59.604 37.037 10.02 0.00 37.42 0.98
217 516 6.211384 CCTTGAACTTTGAAAGGGACCATTAT 59.789 38.462 10.02 0.00 37.42 1.28
218 517 5.538433 CCTTGAACTTTGAAAGGGACCATTA 59.462 40.000 10.02 0.00 37.42 1.90
219 518 4.344968 CCTTGAACTTTGAAAGGGACCATT 59.655 41.667 10.02 0.00 37.42 3.16
220 519 3.897505 CCTTGAACTTTGAAAGGGACCAT 59.102 43.478 10.02 0.00 37.42 3.55
221 520 3.295973 CCTTGAACTTTGAAAGGGACCA 58.704 45.455 10.02 0.00 37.42 4.02
222 521 3.068165 CACCTTGAACTTTGAAAGGGACC 59.932 47.826 10.02 0.00 44.01 4.46
223 522 3.068165 CCACCTTGAACTTTGAAAGGGAC 59.932 47.826 10.02 1.17 44.01 4.46
224 523 3.295973 CCACCTTGAACTTTGAAAGGGA 58.704 45.455 10.02 0.00 44.01 4.20
225 524 3.031013 ACCACCTTGAACTTTGAAAGGG 58.969 45.455 10.02 2.93 44.01 3.95
226 525 4.887655 AGTACCACCTTGAACTTTGAAAGG 59.112 41.667 10.02 0.00 45.02 3.11
227 526 6.451064 AAGTACCACCTTGAACTTTGAAAG 57.549 37.500 2.89 2.89 0.00 2.62
228 527 5.358725 GGAAGTACCACCTTGAACTTTGAAA 59.641 40.000 0.00 0.00 38.79 2.69
229 528 4.885325 GGAAGTACCACCTTGAACTTTGAA 59.115 41.667 0.00 0.00 38.79 2.69
230 529 4.457466 GGAAGTACCACCTTGAACTTTGA 58.543 43.478 0.00 0.00 38.79 2.69
231 530 3.250040 CGGAAGTACCACCTTGAACTTTG 59.750 47.826 4.76 0.00 38.90 2.77
232 531 3.473625 CGGAAGTACCACCTTGAACTTT 58.526 45.455 4.76 0.00 38.90 2.66
233 532 2.809299 GCGGAAGTACCACCTTGAACTT 60.809 50.000 4.76 0.00 38.90 2.66
234 533 1.270678 GCGGAAGTACCACCTTGAACT 60.271 52.381 4.76 0.00 38.90 3.01
235 534 1.154197 GCGGAAGTACCACCTTGAAC 58.846 55.000 4.76 0.00 38.90 3.18
236 535 0.759959 TGCGGAAGTACCACCTTGAA 59.240 50.000 4.76 0.00 38.90 2.69
237 536 0.981183 ATGCGGAAGTACCACCTTGA 59.019 50.000 4.76 0.00 38.90 3.02
238 537 1.737793 GAATGCGGAAGTACCACCTTG 59.262 52.381 4.76 0.00 38.90 3.61
239 538 1.628846 AGAATGCGGAAGTACCACCTT 59.371 47.619 4.76 0.00 38.90 3.50
240 539 1.276622 AGAATGCGGAAGTACCACCT 58.723 50.000 4.76 0.00 38.90 4.00
241 540 2.109425 AAGAATGCGGAAGTACCACC 57.891 50.000 0.00 0.00 38.90 4.61
242 541 3.365969 CCAAAAGAATGCGGAAGTACCAC 60.366 47.826 0.00 0.00 38.90 4.16
243 542 2.817258 CCAAAAGAATGCGGAAGTACCA 59.183 45.455 0.00 0.00 38.90 3.25
244 543 2.817844 ACCAAAAGAATGCGGAAGTACC 59.182 45.455 0.00 0.00 0.00 3.34
245 544 5.813080 ATACCAAAAGAATGCGGAAGTAC 57.187 39.130 0.00 0.00 0.00 2.73
246 545 6.207810 ACAAATACCAAAAGAATGCGGAAGTA 59.792 34.615 0.00 0.00 0.00 2.24
247 546 5.010617 ACAAATACCAAAAGAATGCGGAAGT 59.989 36.000 0.00 0.00 0.00 3.01
248 547 5.469479 ACAAATACCAAAAGAATGCGGAAG 58.531 37.500 0.00 0.00 0.00 3.46
249 548 5.461032 ACAAATACCAAAAGAATGCGGAA 57.539 34.783 0.00 0.00 0.00 4.30
250 549 5.941058 TCTACAAATACCAAAAGAATGCGGA 59.059 36.000 0.00 0.00 0.00 5.54
251 550 6.128007 ACTCTACAAATACCAAAAGAATGCGG 60.128 38.462 0.00 0.00 0.00 5.69
252 551 6.842163 ACTCTACAAATACCAAAAGAATGCG 58.158 36.000 0.00 0.00 0.00 4.73
253 552 9.129209 GAAACTCTACAAATACCAAAAGAATGC 57.871 33.333 0.00 0.00 0.00 3.56
362 661 6.174451 AGCATGCGAATCATATATTCACAC 57.826 37.500 13.01 0.00 33.19 3.82
364 663 6.522165 CACAAGCATGCGAATCATATATTCAC 59.478 38.462 13.01 0.00 33.19 3.18
408 708 1.886886 TTTTGTCCGGCAGTTAGTCC 58.113 50.000 0.00 0.00 0.00 3.85
415 715 4.433186 TGAATGTAATTTTGTCCGGCAG 57.567 40.909 0.00 0.00 36.07 4.85
446 746 1.900486 GGGTAGATCTATTGGGACCCG 59.100 57.143 12.38 0.00 37.38 5.28
451 751 0.246635 CGCCGGGTAGATCTATTGGG 59.753 60.000 5.57 8.40 0.00 4.12
464 764 1.227556 CCTAGTGGATTTCGCCGGG 60.228 63.158 2.18 0.00 34.57 5.73
482 782 2.040544 ACGCTTATGTGGCAGTGGC 61.041 57.895 10.30 10.30 40.13 5.01
554 854 1.202651 CCTGTCTTTCGTGGTGAACCT 60.203 52.381 0.37 0.00 35.97 3.50
623 923 5.364778 GCTTAAACCATTGTTCTTTTGGGT 58.635 37.500 0.00 0.00 34.72 4.51
740 1040 5.485620 TCTCTCTCTGTTCATTCATTGGTG 58.514 41.667 0.00 0.00 0.00 4.17
741 1041 5.752036 TCTCTCTCTGTTCATTCATTGGT 57.248 39.130 0.00 0.00 0.00 3.67
791 1091 1.836802 AGTTGCCCCAAAAAGCAGAAA 59.163 42.857 0.00 0.00 40.73 2.52
804 1104 1.856265 CGCTCTTGGTCAAGTTGCCC 61.856 60.000 17.69 5.02 39.38 5.36
805 1105 1.576421 CGCTCTTGGTCAAGTTGCC 59.424 57.895 17.69 3.73 39.38 4.52
817 1117 0.941463 CGTCACTGTCTTGCGCTCTT 60.941 55.000 9.73 0.00 0.00 2.85
851 1151 0.985490 AGGGGTTCTGATGGAGGAGC 60.985 60.000 0.00 0.00 0.00 4.70
866 1166 1.228063 CGGCCATCTTCATGAGGGG 60.228 63.158 2.24 0.42 46.01 4.79
956 1256 4.742201 CTGCTGGCTGCCGTACGT 62.742 66.667 14.98 0.00 42.00 3.57
957 1257 4.435436 TCTGCTGGCTGCCGTACG 62.435 66.667 14.98 8.69 42.00 3.67
958 1258 2.510238 CTCTGCTGGCTGCCGTAC 60.510 66.667 14.98 6.32 42.00 3.67
959 1259 4.457496 GCTCTGCTGGCTGCCGTA 62.457 66.667 14.98 7.60 42.00 4.02
985 1285 3.561213 CATGCTCGCTGGTCGCTG 61.561 66.667 0.00 0.00 38.27 5.18
986 1286 4.827087 CCATGCTCGCTGGTCGCT 62.827 66.667 0.00 0.00 38.27 4.93
988 1288 3.190849 CACCATGCTCGCTGGTCG 61.191 66.667 9.18 4.12 45.23 4.79
989 1289 2.821366 CCACCATGCTCGCTGGTC 60.821 66.667 9.18 0.00 45.23 4.02
991 1291 4.100084 TCCCACCATGCTCGCTGG 62.100 66.667 6.04 6.04 39.80 4.85
1086 1386 2.363795 TCCTCGGCCACCCAGTAG 60.364 66.667 2.24 0.00 0.00 2.57
1227 1527 3.302347 GACCGTGGCTGTCTGGAGG 62.302 68.421 0.00 0.00 0.00 4.30
1232 1532 1.768684 ATGGTTGACCGTGGCTGTCT 61.769 55.000 0.00 0.00 39.43 3.41
1233 1537 1.302511 ATGGTTGACCGTGGCTGTC 60.303 57.895 0.00 0.00 39.43 3.51
1262 1566 2.351738 CCCAACGATCAAAACTCAAGGC 60.352 50.000 0.00 0.00 0.00 4.35
1350 1654 1.880894 CTTCCTGCCGTACTCGTCA 59.119 57.895 0.00 0.00 35.01 4.35
1407 1711 6.655003 AGAAATGAATGGTGTGGTTACTGTAG 59.345 38.462 0.00 0.00 0.00 2.74
1422 1726 7.912056 TGTAGAACAGGAAGAGAAATGAATG 57.088 36.000 0.00 0.00 0.00 2.67
1448 1912 8.801299 TGATTGTTGATGCAAAAGGTAGAAATA 58.199 29.630 0.00 0.00 31.63 1.40
1475 1942 8.559536 CATATGAACGCAATAGTTATGAAAGGT 58.440 33.333 0.00 0.00 34.00 3.50
1570 2037 2.300433 TGGCCGATCATGAATGAAAGG 58.700 47.619 0.00 11.07 40.69 3.11
1573 2040 2.300433 CCTTGGCCGATCATGAATGAA 58.700 47.619 0.00 0.00 40.69 2.57
1702 2170 2.747686 GCCCTCTTGGACGGTTCA 59.252 61.111 0.00 0.00 35.39 3.18
1735 2203 0.826256 CCGACAGGATCCCGGTCATA 60.826 60.000 25.54 0.00 46.35 2.15
1810 2278 3.935203 CAGCTAGTTGACAATGTACCTGG 59.065 47.826 0.00 0.00 0.00 4.45
1818 2286 6.699575 AACAAGTTTCAGCTAGTTGACAAT 57.300 33.333 9.01 0.00 31.80 2.71
1854 2345 5.912955 CGGTCCAGAATTTGTAAAAGTGAAC 59.087 40.000 0.00 0.00 0.00 3.18
1859 2350 5.447624 AACCGGTCCAGAATTTGTAAAAG 57.552 39.130 8.04 0.00 0.00 2.27
1869 2360 2.554893 GCATAAACAAACCGGTCCAGAA 59.445 45.455 8.04 0.00 0.00 3.02
1876 2367 2.287069 TGTCAACGCATAAACAAACCGG 60.287 45.455 0.00 0.00 0.00 5.28
1895 2386 2.296073 AGAGAAGAACCGAGACCTGT 57.704 50.000 0.00 0.00 0.00 4.00
1913 2404 0.393077 AGACCACGGAACAGACCAAG 59.607 55.000 0.00 0.00 0.00 3.61
1914 2405 1.342174 GTAGACCACGGAACAGACCAA 59.658 52.381 0.00 0.00 0.00 3.67
2106 2598 8.279970 ACTGCACAATAGAAAATAGTATTGCA 57.720 30.769 0.00 0.00 39.34 4.08
2137 2629 9.699703 GCAAATTACTCAACCATACCTTTAAAA 57.300 29.630 0.00 0.00 0.00 1.52
2173 2666 8.941977 TGAGCGTTACACATGTTTTTAGATTAT 58.058 29.630 0.00 0.00 0.00 1.28
2189 2684 5.178623 CCTAACTGAAAACATGAGCGTTACA 59.821 40.000 0.00 0.00 0.00 2.41
2190 2685 5.407387 TCCTAACTGAAAACATGAGCGTTAC 59.593 40.000 0.00 0.00 0.00 2.50
2198 2693 7.254084 GCAAACTGTTTCCTAACTGAAAACATG 60.254 37.037 2.13 0.00 36.09 3.21
2319 2842 1.366366 GCTGATGCCAATCATGCCC 59.634 57.895 0.00 0.00 41.97 5.36
2365 2888 4.202182 ACCGTAGCAGAGTAAAACAGAACA 60.202 41.667 0.00 0.00 0.00 3.18
2381 2904 1.505425 AGTTTTCGGAACACCGTAGC 58.495 50.000 8.46 1.53 45.96 3.58
2446 2969 8.187913 TGATTCTTGTCAAATCCAAATACCAA 57.812 30.769 0.00 0.00 33.13 3.67
2548 3121 4.009675 TCAATAGGACAATGCACCACTTC 58.990 43.478 0.00 0.00 0.00 3.01
2552 3125 7.473735 TTTTTATCAATAGGACAATGCACCA 57.526 32.000 0.00 0.00 0.00 4.17
2613 3199 4.037222 TGGATAGCAACTGGGAGTATCAA 58.963 43.478 0.00 0.00 36.25 2.57
2716 3303 5.364778 ACACCGCAACAGCTGATATTAATA 58.635 37.500 23.35 0.00 0.00 0.98
2879 3466 9.862371 GTAATGAAAGAGAGAGACATTTGTAGA 57.138 33.333 0.00 0.00 33.99 2.59
3025 3614 5.112686 TGAATTAACTGCGGCAAACTTTTT 58.887 33.333 3.44 0.00 0.00 1.94
3036 3625 6.032775 GTGACACAATCATTGAATTAACTGCG 59.967 38.462 3.79 0.00 40.28 5.18
3077 3666 6.659668 TGAGACGGAGGGAGTATATTATTGAG 59.340 42.308 0.00 0.00 0.00 3.02
3089 3684 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
3090 3685 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
3091 3686 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
3092 3687 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
3093 3688 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
3094 3689 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
3095 3690 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
3096 3691 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
3107 3702 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
3108 3703 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3110 3705 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3111 3706 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3118 3713 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
3119 3714 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
3120 3715 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
3121 3716 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
3122 3717 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
3123 3718 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
3124 3719 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
3125 3720 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
3126 3721 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
3127 3722 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
3128 3723 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
3129 3724 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3130 3725 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3131 3726 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
3132 3727 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3180 3775 7.878127 TCCGTCTCAAAATTCTTGTCTTAGAAT 59.122 33.333 0.00 0.00 44.62 2.40
3181 3776 7.214381 TCCGTCTCAAAATTCTTGTCTTAGAA 58.786 34.615 0.00 0.00 38.43 2.10
3182 3777 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
3183 3778 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
3184 3779 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
3185 3780 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
3186 3781 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
3187 3782 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
3188 3783 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
3189 3784 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
3190 3785 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
3191 3786 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
3192 3787 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
3193 3788 6.555463 TTATACTCCCTCCGTCTCAAAATT 57.445 37.500 0.00 0.00 0.00 1.82
3194 3789 5.453480 GCTTATACTCCCTCCGTCTCAAAAT 60.453 44.000 0.00 0.00 0.00 1.82
3195 3790 4.142004 GCTTATACTCCCTCCGTCTCAAAA 60.142 45.833 0.00 0.00 0.00 2.44
3196 3791 3.383825 GCTTATACTCCCTCCGTCTCAAA 59.616 47.826 0.00 0.00 0.00 2.69
3197 3792 2.957006 GCTTATACTCCCTCCGTCTCAA 59.043 50.000 0.00 0.00 0.00 3.02
3198 3793 2.175069 AGCTTATACTCCCTCCGTCTCA 59.825 50.000 0.00 0.00 0.00 3.27
3199 3794 2.866351 AGCTTATACTCCCTCCGTCTC 58.134 52.381 0.00 0.00 0.00 3.36
3200 3795 3.315880 AAGCTTATACTCCCTCCGTCT 57.684 47.619 0.00 0.00 0.00 4.18
3201 3796 5.725325 ATTAAGCTTATACTCCCTCCGTC 57.275 43.478 7.08 0.00 0.00 4.79
3202 3797 8.334734 TCTATATTAAGCTTATACTCCCTCCGT 58.665 37.037 7.08 0.00 0.00 4.69
3203 3798 8.749026 TCTATATTAAGCTTATACTCCCTCCG 57.251 38.462 7.08 0.00 0.00 4.63
3204 3799 8.635328 GCTCTATATTAAGCTTATACTCCCTCC 58.365 40.741 7.08 0.00 35.60 4.30
3205 3800 9.416284 AGCTCTATATTAAGCTTATACTCCCTC 57.584 37.037 7.08 0.00 46.49 4.30
3229 3824 6.803154 AGTCTGTACATGTTAAAAGGAAGC 57.197 37.500 2.30 0.00 0.00 3.86
3306 3901 5.632347 CAGATTGAGGCAAGAAATGTTTCAC 59.368 40.000 8.09 0.00 39.61 3.18
3322 3917 4.154737 TCACGCTTGGATTTTCAGATTGAG 59.845 41.667 0.00 0.00 0.00 3.02
3325 3920 5.066505 GGTATCACGCTTGGATTTTCAGATT 59.933 40.000 0.00 0.00 0.00 2.40
3333 3928 3.740141 CGGTTAGGTATCACGCTTGGATT 60.740 47.826 0.00 0.00 0.00 3.01
3342 3937 4.397481 AAACTAGGCGGTTAGGTATCAC 57.603 45.455 0.00 0.00 0.00 3.06
3370 3965 3.204418 GCCAAAGCCATCAGGAGC 58.796 61.111 0.00 0.00 36.89 4.70
3499 4094 5.275067 TCAACCTCCATTTCAACAAAAGG 57.725 39.130 0.00 0.00 0.00 3.11
3676 4271 3.008594 TGAAGGGTGCTTCTTCCGAAATA 59.991 43.478 10.23 0.00 39.72 1.40
3727 4322 1.608283 GGACTGACCAGGAAGAAACCG 60.608 57.143 0.00 0.00 38.79 4.44
3826 4421 7.119846 GCCTGTAGAAATGTTGTACTTGAGATT 59.880 37.037 0.00 0.00 31.26 2.40
3854 4449 4.389890 TCCAAGCAAATGCCAATGATAC 57.610 40.909 0.94 0.00 43.38 2.24
3889 4484 4.202050 ACTCCAATGTGTTTGTCTTTGCTC 60.202 41.667 0.00 0.00 33.15 4.26
3903 4498 2.306805 TCCTGATCTGCAACTCCAATGT 59.693 45.455 0.00 0.00 0.00 2.71
3909 4504 2.011046 GCTGGTCCTGATCTGCAACTC 61.011 57.143 4.61 0.00 36.54 3.01
3922 4517 1.933247 CTTCTTGATCGAGCTGGTCC 58.067 55.000 4.94 0.00 0.00 4.46
3937 4532 0.888285 GTGGTGCTTGAGCTGCTTCT 60.888 55.000 2.53 0.00 42.66 2.85
4035 4630 1.532868 CTAACTTGTGCGCAGAAGCTT 59.467 47.619 38.21 31.12 39.10 3.74
4171 4769 2.479560 GGCAACCAGAAAACAGTGTGAC 60.480 50.000 0.00 0.00 0.00 3.67
4172 4770 1.748493 GGCAACCAGAAAACAGTGTGA 59.252 47.619 0.00 0.00 0.00 3.58
4173 4771 1.533756 CGGCAACCAGAAAACAGTGTG 60.534 52.381 0.00 0.00 0.00 3.82
4174 4772 0.738389 CGGCAACCAGAAAACAGTGT 59.262 50.000 0.00 0.00 0.00 3.55
4175 4773 0.030638 CCGGCAACCAGAAAACAGTG 59.969 55.000 0.00 0.00 0.00 3.66
4176 4774 1.734388 GCCGGCAACCAGAAAACAGT 61.734 55.000 24.80 0.00 0.00 3.55
4177 4775 1.007387 GCCGGCAACCAGAAAACAG 60.007 57.895 24.80 0.00 0.00 3.16
4178 4776 0.179015 TAGCCGGCAACCAGAAAACA 60.179 50.000 31.54 0.00 0.00 2.83
4202 4803 5.751243 AAAACTGTACAAACCAGCTACAG 57.249 39.130 8.64 8.64 42.08 2.74
4292 4895 9.199982 CGAAAGCCTTTTTCGGTAATATCTATA 57.800 33.333 12.72 0.00 45.17 1.31
4345 4948 1.616374 TCCGTGTATGTGTGCTCTTGA 59.384 47.619 0.00 0.00 0.00 3.02
4388 5001 6.038271 ACCTTTGTATTGTTGTTGTGTCTCTC 59.962 38.462 0.00 0.00 0.00 3.20
4402 5016 5.710099 TGCCCTTAGAAGAACCTTTGTATTG 59.290 40.000 0.00 0.00 0.00 1.90
4404 5018 5.222048 TGTGCCCTTAGAAGAACCTTTGTAT 60.222 40.000 0.00 0.00 0.00 2.29
4417 5031 1.055849 TGTTGAGCTGTGCCCTTAGA 58.944 50.000 0.00 0.00 0.00 2.10
4484 5108 1.517242 CTGATTAGATGCCGGGCTTC 58.483 55.000 23.35 23.35 33.70 3.86
4486 5110 1.757306 CCTGATTAGATGCCGGGCT 59.243 57.895 21.46 5.57 0.00 5.19
4652 5277 4.436998 CCTCTCCGACGTGCCACC 62.437 72.222 0.00 0.00 0.00 4.61
4754 5379 1.614824 CCAGAACTCCCCTCTGCCT 60.615 63.158 0.00 0.00 39.23 4.75
4760 5385 0.905337 CCGAACTCCAGAACTCCCCT 60.905 60.000 0.00 0.00 0.00 4.79
4790 5416 2.203280 TGCCACACCAACTTCCCG 60.203 61.111 0.00 0.00 0.00 5.14
4858 5484 6.611613 ATCACATCTTCTTCTCCTGTGTAA 57.388 37.500 0.00 0.00 38.61 2.41
4859 5485 6.401394 CAATCACATCTTCTTCTCCTGTGTA 58.599 40.000 0.00 0.00 38.61 2.90
4928 5554 2.560861 GTTCGCAAGCGCAATGGA 59.439 55.556 11.47 5.31 38.40 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.