Multiple sequence alignment - TraesCS5A01G127400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G127400 chr5A 100.000 4862 0 0 1 4862 283310790 283305929 0.000000e+00 8979.0
1 TraesCS5A01G127400 chr5A 90.506 158 13 2 2088 2244 86662171 86662015 1.770000e-49 207.0
2 TraesCS5A01G127400 chr5A 83.486 109 17 1 4704 4811 680280544 680280436 3.100000e-17 100.0
3 TraesCS5A01G127400 chr5B 95.491 2018 84 6 2518 4534 230882261 230880250 0.000000e+00 3216.0
4 TraesCS5A01G127400 chr5B 91.758 1092 61 12 931 2006 230884193 230883115 0.000000e+00 1491.0
5 TraesCS5A01G127400 chr5B 90.970 299 18 5 2101 2396 230882910 230882618 1.270000e-105 394.0
6 TraesCS5A01G127400 chr5B 91.818 110 9 0 2403 2512 230882482 230882373 2.340000e-33 154.0
7 TraesCS5A01G127400 chr5B 89.535 86 8 1 4722 4806 460659009 460658924 1.850000e-19 108.0
8 TraesCS5A01G127400 chr5D 89.447 1791 105 28 753 2512 215303453 215301716 0.000000e+00 2183.0
9 TraesCS5A01G127400 chr5D 94.772 1358 69 2 3205 4561 215300803 215299447 0.000000e+00 2113.0
10 TraesCS5A01G127400 chr5D 96.232 637 22 2 2519 3155 215301456 215300822 0.000000e+00 1042.0
11 TraesCS5A01G127400 chr5D 92.437 238 18 0 4625 4862 215299026 215298789 1.680000e-89 340.0
12 TraesCS5A01G127400 chr5D 90.625 64 6 0 4705 4768 520287107 520287044 8.670000e-13 86.1
13 TraesCS5A01G127400 chr5D 100.000 40 0 0 4552 4591 215299057 215299018 1.880000e-09 75.0
14 TraesCS5A01G127400 chr7B 81.425 926 131 26 2243 3148 425265730 425264826 0.000000e+00 719.0
15 TraesCS5A01G127400 chr7B 84.830 501 64 11 2740 3239 683228443 683228932 1.220000e-135 494.0
16 TraesCS5A01G127400 chr7B 83.557 298 33 5 314 598 339029195 339029489 1.040000e-66 265.0
17 TraesCS5A01G127400 chr2B 86.891 595 70 5 1 593 656598739 656599327 0.000000e+00 660.0
18 TraesCS5A01G127400 chr2B 87.931 116 10 4 4693 4806 26551620 26551507 3.050000e-27 134.0
19 TraesCS5A01G127400 chr2B 84.906 106 14 2 4694 4798 680023106 680023210 6.660000e-19 106.0
20 TraesCS5A01G127400 chr2A 81.018 727 106 20 2439 3148 406497965 406497254 2.560000e-152 549.0
21 TraesCS5A01G127400 chr2A 80.593 742 112 19 2424 3148 394706995 394707721 1.190000e-150 544.0
22 TraesCS5A01G127400 chr2A 91.837 147 11 1 1586 1731 79316157 79316011 2.290000e-48 204.0
23 TraesCS5A01G127400 chr7A 82.836 536 66 13 2740 3269 694355153 694355668 1.600000e-124 457.0
24 TraesCS5A01G127400 chr7A 90.968 155 12 2 2088 2241 201987155 201987002 1.770000e-49 207.0
25 TraesCS5A01G127400 chr7A 85.217 115 11 5 4696 4807 23110196 23110307 3.980000e-21 113.0
26 TraesCS5A01G127400 chr7A 90.541 74 7 0 4693 4766 416425220 416425147 1.110000e-16 99.0
27 TraesCS5A01G127400 chr7A 90.698 43 4 0 4705 4747 718341629 718341587 1.890000e-04 58.4
28 TraesCS5A01G127400 chr3B 80.556 612 74 19 2 592 602287276 602286689 3.480000e-116 429.0
29 TraesCS5A01G127400 chr3B 89.024 164 14 3 1585 1744 328715599 328715436 2.970000e-47 200.0
30 TraesCS5A01G127400 chr6B 83.121 314 37 5 297 597 371116148 371116458 6.200000e-69 272.0
31 TraesCS5A01G127400 chr6B 84.167 120 16 3 4690 4807 135127684 135127802 3.980000e-21 113.0
32 TraesCS5A01G127400 chr6A 91.613 155 12 1 2088 2242 532026929 532026776 3.810000e-51 213.0
33 TraesCS5A01G127400 chr7D 91.083 157 12 2 2087 2243 156796992 156796838 1.370000e-50 211.0
34 TraesCS5A01G127400 chr7D 87.719 171 18 3 1586 1753 454079230 454079060 3.840000e-46 196.0
35 TraesCS5A01G127400 chr7D 84.500 200 26 4 2742 2939 602687341 602687537 4.970000e-45 193.0
36 TraesCS5A01G127400 chr4B 92.053 151 11 1 1585 1734 438375334 438375184 1.370000e-50 211.0
37 TraesCS5A01G127400 chr4B 90.260 154 13 2 1589 1740 146469365 146469212 2.970000e-47 200.0
38 TraesCS5A01G127400 chr4A 90.683 161 12 3 2085 2244 514080008 514080166 1.370000e-50 211.0
39 TraesCS5A01G127400 chr4D 90.446 157 13 2 2086 2242 509824769 509824615 6.380000e-49 206.0
40 TraesCS5A01G127400 chr4D 89.441 161 16 1 2085 2244 74079508 74079348 8.250000e-48 202.0
41 TraesCS5A01G127400 chr1D 90.062 161 12 4 1586 1744 7349704 7349862 6.380000e-49 206.0
42 TraesCS5A01G127400 chr1D 100.000 38 0 0 4730 4767 473773770 473773807 2.430000e-08 71.3
43 TraesCS5A01G127400 chr2D 90.260 154 13 2 1586 1737 79056319 79056166 2.970000e-47 200.0
44 TraesCS5A01G127400 chr3D 82.727 110 17 2 4707 4814 603650506 603650615 4.010000e-16 97.1
45 TraesCS5A01G127400 chr3D 88.000 75 6 3 4693 4766 495913973 495913901 8.670000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G127400 chr5A 283305929 283310790 4861 True 8979.00 8979 100.00000 1 4862 1 chr5A.!!$R2 4861
1 TraesCS5A01G127400 chr5B 230880250 230884193 3943 True 1313.75 3216 92.50925 931 4534 4 chr5B.!!$R2 3603
2 TraesCS5A01G127400 chr5D 215298789 215303453 4664 True 1150.60 2183 94.57760 753 4862 5 chr5D.!!$R2 4109
3 TraesCS5A01G127400 chr7B 425264826 425265730 904 True 719.00 719 81.42500 2243 3148 1 chr7B.!!$R1 905
4 TraesCS5A01G127400 chr2B 656598739 656599327 588 False 660.00 660 86.89100 1 593 1 chr2B.!!$F1 592
5 TraesCS5A01G127400 chr2A 406497254 406497965 711 True 549.00 549 81.01800 2439 3148 1 chr2A.!!$R2 709
6 TraesCS5A01G127400 chr2A 394706995 394707721 726 False 544.00 544 80.59300 2424 3148 1 chr2A.!!$F1 724
7 TraesCS5A01G127400 chr7A 694355153 694355668 515 False 457.00 457 82.83600 2740 3269 1 chr7A.!!$F2 529
8 TraesCS5A01G127400 chr3B 602286689 602287276 587 True 429.00 429 80.55600 2 592 1 chr3B.!!$R2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.035458 GACCACCAGTAAGCAGCAGT 59.965 55.000 0.00 0.0 0.00 4.40 F
629 651 0.036858 AGCCGTCTCTTCTTTGAGCC 60.037 55.000 0.00 0.0 34.29 4.70 F
691 713 0.108520 GAAACGGCCGTGATCAGGTA 60.109 55.000 34.95 0.0 0.00 3.08 F
902 927 0.248012 TTTTCGCGGCATCAGGTCTA 59.752 50.000 6.13 0.0 0.00 2.59 F
903 928 0.459585 TTTCGCGGCATCAGGTCTAC 60.460 55.000 6.13 0.0 0.00 2.59 F
1181 1218 0.526211 GGCCATGGGTTCGTTTCTTC 59.474 55.000 15.13 0.0 0.00 2.87 F
1787 1833 0.529378 CCTGCACCAAGAGGCAAATC 59.471 55.000 0.00 0.0 39.93 2.17 F
2103 2261 1.893801 CTTGTACTCCCTCCGTTCACT 59.106 52.381 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 1550 0.382873 CAAGCACAGCAGTCAAGCAA 59.617 50.000 0.00 0.0 36.85 3.91 R
1909 1956 0.397941 CTCAAGGGCTGAGGTTCACA 59.602 55.000 0.00 0.0 46.89 3.58 R
2027 2076 0.610687 AGCGGAGGGTGAAGAAGAAG 59.389 55.000 0.00 0.0 0.00 2.85 R
2030 2079 1.078848 CCAGCGGAGGGTGAAGAAG 60.079 63.158 0.00 0.0 44.37 2.85 R
2311 2472 2.440409 GGAGCTCTCAAATGGCAGAAA 58.560 47.619 14.64 0.0 0.00 2.52 R
3164 3726 0.308993 GGCATCAAAGTAGCCGCATC 59.691 55.000 0.00 0.0 38.86 3.91 R
3538 4107 0.540365 ATGGTGTGCAAGTTCCCCAG 60.540 55.000 0.00 0.0 0.00 4.45 R
4040 4609 5.221126 GGAGTTGGATGTTGATAATTCAGGC 60.221 44.000 0.00 0.0 32.27 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.034879 CGCCAAGGCTGAACACGAT 61.035 57.895 9.73 0.00 39.32 3.73
78 79 2.925170 AAGTGGAGTCGGGCAGCT 60.925 61.111 0.00 0.00 0.00 4.24
125 126 0.035458 GACCACCAGTAAGCAGCAGT 59.965 55.000 0.00 0.00 0.00 4.40
155 157 1.369689 CACGAACAACAGCAGCAGC 60.370 57.895 0.00 0.00 42.56 5.25
183 185 1.648720 CCACGAACAACACCAGCAG 59.351 57.895 0.00 0.00 0.00 4.24
189 191 1.071699 GAACAACACCAGCAGTAGGGA 59.928 52.381 0.00 0.00 0.00 4.20
190 192 0.396811 ACAACACCAGCAGTAGGGAC 59.603 55.000 0.00 0.00 0.00 4.46
204 206 0.836400 AGGGACCGGCAAGAAGAAGA 60.836 55.000 0.00 0.00 0.00 2.87
212 214 1.291877 GCAAGAAGAAGAAGCGGCGA 61.292 55.000 12.98 0.00 0.00 5.54
229 231 0.179171 CGACATAACAGAGCGACGGT 60.179 55.000 0.00 0.00 0.00 4.83
231 233 2.717530 GACATAACAGAGCGACGGTAG 58.282 52.381 0.00 0.00 0.00 3.18
232 234 1.202268 ACATAACAGAGCGACGGTAGC 60.202 52.381 4.99 4.99 0.00 3.58
245 247 2.556287 GTAGCGCACAAGCACACC 59.444 61.111 11.47 0.00 42.27 4.16
246 248 2.110006 TAGCGCACAAGCACACCA 59.890 55.556 11.47 0.00 42.27 4.17
251 253 1.823470 GCACAAGCACACCAGACCA 60.823 57.895 0.00 0.00 41.58 4.02
289 291 3.197790 CTGCATCAAGACGGGCGG 61.198 66.667 0.00 0.00 0.00 6.13
382 391 2.257371 CCGTCTTCCGTCGAGCAA 59.743 61.111 0.00 0.00 33.66 3.91
384 393 2.426183 CGTCTTCCGTCGAGCAACG 61.426 63.158 0.00 0.00 42.24 4.10
435 456 0.318762 AGCTCGTCTCCTTGGTGAAC 59.681 55.000 0.00 0.00 0.00 3.18
468 489 2.391678 GGGCAATCTGGTGATTTCCAT 58.608 47.619 9.02 0.00 44.29 3.41
469 490 2.101917 GGGCAATCTGGTGATTTCCATG 59.898 50.000 9.02 0.00 44.29 3.66
496 518 1.619827 CACATGACTGGGGCAAAACAT 59.380 47.619 0.00 0.00 0.00 2.71
501 523 1.691434 GACTGGGGCAAAACATCCAAA 59.309 47.619 0.00 0.00 0.00 3.28
509 531 4.133078 GGCAAAACATCCAAATCCAAACA 58.867 39.130 0.00 0.00 0.00 2.83
527 549 4.935352 AACAAAGCAGTGGCAAATAAGA 57.065 36.364 0.00 0.00 44.61 2.10
571 593 5.389098 GCTAATCGTCAAAGTGCGAAGTAAA 60.389 40.000 0.00 0.00 40.61 2.01
572 594 5.412526 AATCGTCAAAGTGCGAAGTAAAA 57.587 34.783 0.00 0.00 40.61 1.52
593 615 9.900264 GTAAAATCGTGGCAAAATATCAAAATC 57.100 29.630 0.00 0.00 0.00 2.17
594 616 7.538303 AAATCGTGGCAAAATATCAAAATCC 57.462 32.000 0.00 0.00 0.00 3.01
595 617 5.004922 TCGTGGCAAAATATCAAAATCCC 57.995 39.130 0.00 0.00 0.00 3.85
596 618 4.119136 CGTGGCAAAATATCAAAATCCCC 58.881 43.478 0.00 0.00 0.00 4.81
597 619 4.119136 GTGGCAAAATATCAAAATCCCCG 58.881 43.478 0.00 0.00 0.00 5.73
598 620 3.772025 TGGCAAAATATCAAAATCCCCGT 59.228 39.130 0.00 0.00 0.00 5.28
599 621 4.956700 TGGCAAAATATCAAAATCCCCGTA 59.043 37.500 0.00 0.00 0.00 4.02
600 622 5.163499 TGGCAAAATATCAAAATCCCCGTAC 60.163 40.000 0.00 0.00 0.00 3.67
601 623 5.163499 GGCAAAATATCAAAATCCCCGTACA 60.163 40.000 0.00 0.00 0.00 2.90
602 624 6.334202 GCAAAATATCAAAATCCCCGTACAA 58.666 36.000 0.00 0.00 0.00 2.41
603 625 6.983890 GCAAAATATCAAAATCCCCGTACAAT 59.016 34.615 0.00 0.00 0.00 2.71
604 626 7.494298 GCAAAATATCAAAATCCCCGTACAATT 59.506 33.333 0.00 0.00 0.00 2.32
605 627 9.377312 CAAAATATCAAAATCCCCGTACAATTT 57.623 29.630 0.00 0.00 0.00 1.82
606 628 9.594478 AAAATATCAAAATCCCCGTACAATTTC 57.406 29.630 0.00 0.00 0.00 2.17
607 629 8.533569 AATATCAAAATCCCCGTACAATTTCT 57.466 30.769 0.00 0.00 0.00 2.52
608 630 9.635404 AATATCAAAATCCCCGTACAATTTCTA 57.365 29.630 0.00 0.00 0.00 2.10
609 631 6.746745 TCAAAATCCCCGTACAATTTCTAC 57.253 37.500 0.00 0.00 0.00 2.59
610 632 6.239396 TCAAAATCCCCGTACAATTTCTACA 58.761 36.000 0.00 0.00 0.00 2.74
611 633 6.373216 TCAAAATCCCCGTACAATTTCTACAG 59.627 38.462 0.00 0.00 0.00 2.74
612 634 3.255969 TCCCCGTACAATTTCTACAGC 57.744 47.619 0.00 0.00 0.00 4.40
613 635 2.093341 TCCCCGTACAATTTCTACAGCC 60.093 50.000 0.00 0.00 0.00 4.85
614 636 1.931172 CCCGTACAATTTCTACAGCCG 59.069 52.381 0.00 0.00 0.00 5.52
615 637 2.613691 CCGTACAATTTCTACAGCCGT 58.386 47.619 0.00 0.00 0.00 5.68
616 638 2.601763 CCGTACAATTTCTACAGCCGTC 59.398 50.000 0.00 0.00 0.00 4.79
617 639 3.508762 CGTACAATTTCTACAGCCGTCT 58.491 45.455 0.00 0.00 0.00 4.18
618 640 3.546670 CGTACAATTTCTACAGCCGTCTC 59.453 47.826 0.00 0.00 0.00 3.36
619 641 3.963428 ACAATTTCTACAGCCGTCTCT 57.037 42.857 0.00 0.00 0.00 3.10
620 642 4.273148 ACAATTTCTACAGCCGTCTCTT 57.727 40.909 0.00 0.00 0.00 2.85
621 643 4.246458 ACAATTTCTACAGCCGTCTCTTC 58.754 43.478 0.00 0.00 0.00 2.87
622 644 4.021016 ACAATTTCTACAGCCGTCTCTTCT 60.021 41.667 0.00 0.00 0.00 2.85
623 645 4.810191 ATTTCTACAGCCGTCTCTTCTT 57.190 40.909 0.00 0.00 0.00 2.52
624 646 4.602340 TTTCTACAGCCGTCTCTTCTTT 57.398 40.909 0.00 0.00 0.00 2.52
625 647 3.577649 TCTACAGCCGTCTCTTCTTTG 57.422 47.619 0.00 0.00 0.00 2.77
626 648 3.154710 TCTACAGCCGTCTCTTCTTTGA 58.845 45.455 0.00 0.00 0.00 2.69
627 649 2.447244 ACAGCCGTCTCTTCTTTGAG 57.553 50.000 0.00 0.00 35.52 3.02
628 650 1.074752 CAGCCGTCTCTTCTTTGAGC 58.925 55.000 0.00 0.00 34.29 4.26
629 651 0.036858 AGCCGTCTCTTCTTTGAGCC 60.037 55.000 0.00 0.00 34.29 4.70
630 652 0.320771 GCCGTCTCTTCTTTGAGCCA 60.321 55.000 0.00 0.00 34.29 4.75
631 653 1.677217 GCCGTCTCTTCTTTGAGCCAT 60.677 52.381 0.00 0.00 34.29 4.40
632 654 2.275318 CCGTCTCTTCTTTGAGCCATC 58.725 52.381 0.00 0.00 34.29 3.51
633 655 1.923204 CGTCTCTTCTTTGAGCCATCG 59.077 52.381 0.00 0.00 34.29 3.84
634 656 2.416027 CGTCTCTTCTTTGAGCCATCGA 60.416 50.000 0.00 0.00 34.29 3.59
635 657 3.186119 GTCTCTTCTTTGAGCCATCGAG 58.814 50.000 0.00 0.00 34.29 4.04
636 658 2.828520 TCTCTTCTTTGAGCCATCGAGT 59.171 45.455 0.00 0.00 34.29 4.18
637 659 3.259374 TCTCTTCTTTGAGCCATCGAGTT 59.741 43.478 0.00 0.00 34.29 3.01
638 660 3.589988 TCTTCTTTGAGCCATCGAGTTC 58.410 45.455 0.00 0.00 0.00 3.01
639 661 3.006859 TCTTCTTTGAGCCATCGAGTTCA 59.993 43.478 0.00 0.00 0.00 3.18
640 662 3.401033 TCTTTGAGCCATCGAGTTCAA 57.599 42.857 0.71 0.71 0.00 2.69
641 663 3.738982 TCTTTGAGCCATCGAGTTCAAA 58.261 40.909 13.44 13.44 37.25 2.69
642 664 3.498397 TCTTTGAGCCATCGAGTTCAAAC 59.502 43.478 11.07 0.00 35.34 2.93
643 665 2.839486 TGAGCCATCGAGTTCAAACT 57.161 45.000 0.00 0.00 43.16 2.66
661 683 2.806288 CTCATTTTGAGTTACGCGGG 57.194 50.000 12.47 0.00 39.58 6.13
662 684 0.800012 TCATTTTGAGTTACGCGGGC 59.200 50.000 12.47 0.00 0.00 6.13
663 685 0.802494 CATTTTGAGTTACGCGGGCT 59.198 50.000 12.47 4.86 0.00 5.19
664 686 0.802494 ATTTTGAGTTACGCGGGCTG 59.198 50.000 12.47 0.00 0.00 4.85
665 687 1.231958 TTTTGAGTTACGCGGGCTGG 61.232 55.000 12.47 0.00 0.00 4.85
666 688 2.386064 TTTGAGTTACGCGGGCTGGT 62.386 55.000 12.47 0.00 0.00 4.00
667 689 2.508663 GAGTTACGCGGGCTGGTC 60.509 66.667 12.47 0.00 0.00 4.02
668 690 4.078516 AGTTACGCGGGCTGGTCC 62.079 66.667 12.47 0.00 0.00 4.46
669 691 4.382320 GTTACGCGGGCTGGTCCA 62.382 66.667 12.47 0.00 36.21 4.02
670 692 4.077184 TTACGCGGGCTGGTCCAG 62.077 66.667 15.15 15.15 36.21 3.86
674 696 4.329545 GCGGGCTGGTCCAGTGAA 62.330 66.667 20.24 0.00 36.21 3.18
675 697 2.429930 CGGGCTGGTCCAGTGAAA 59.570 61.111 20.24 0.00 36.21 2.69
676 698 1.966451 CGGGCTGGTCCAGTGAAAC 60.966 63.158 20.24 2.88 36.21 2.78
677 699 1.966451 GGGCTGGTCCAGTGAAACG 60.966 63.158 20.24 0.00 45.86 3.60
678 700 1.966451 GGCTGGTCCAGTGAAACGG 60.966 63.158 20.24 0.00 45.86 4.44
679 701 2.617274 GCTGGTCCAGTGAAACGGC 61.617 63.158 20.24 0.00 45.86 5.68
680 702 1.966451 CTGGTCCAGTGAAACGGCC 60.966 63.158 11.09 0.00 45.86 6.13
681 703 3.047877 GGTCCAGTGAAACGGCCG 61.048 66.667 26.86 26.86 45.86 6.13
682 704 2.280592 GTCCAGTGAAACGGCCGT 60.281 61.111 28.70 28.70 45.86 5.68
683 705 2.280524 TCCAGTGAAACGGCCGTG 60.281 61.111 34.95 18.34 45.86 4.94
684 706 2.280524 CCAGTGAAACGGCCGTGA 60.281 61.111 34.95 16.67 45.86 4.35
685 707 1.671054 CCAGTGAAACGGCCGTGAT 60.671 57.895 34.95 24.58 45.86 3.06
686 708 1.635663 CCAGTGAAACGGCCGTGATC 61.636 60.000 34.95 30.88 45.86 2.92
687 709 0.948623 CAGTGAAACGGCCGTGATCA 60.949 55.000 34.95 33.03 45.86 2.92
688 710 0.670546 AGTGAAACGGCCGTGATCAG 60.671 55.000 34.52 8.48 45.86 2.90
689 711 1.375396 TGAAACGGCCGTGATCAGG 60.375 57.895 34.95 8.47 0.00 3.86
690 712 1.375523 GAAACGGCCGTGATCAGGT 60.376 57.895 34.95 11.84 0.00 4.00
691 713 0.108520 GAAACGGCCGTGATCAGGTA 60.109 55.000 34.95 0.00 0.00 3.08
692 714 0.539986 AAACGGCCGTGATCAGGTAT 59.460 50.000 34.95 10.02 0.00 2.73
693 715 1.405872 AACGGCCGTGATCAGGTATA 58.594 50.000 34.95 0.00 0.00 1.47
694 716 0.672342 ACGGCCGTGATCAGGTATAC 59.328 55.000 33.75 0.00 0.00 1.47
695 717 0.671796 CGGCCGTGATCAGGTATACA 59.328 55.000 19.50 0.00 0.00 2.29
696 718 1.067974 CGGCCGTGATCAGGTATACAA 59.932 52.381 19.50 0.00 0.00 2.41
697 719 2.288825 CGGCCGTGATCAGGTATACAAT 60.289 50.000 19.50 0.00 0.00 2.71
698 720 3.067106 GGCCGTGATCAGGTATACAATG 58.933 50.000 13.98 3.18 0.00 2.82
699 721 3.067106 GCCGTGATCAGGTATACAATGG 58.933 50.000 13.98 0.00 0.00 3.16
700 722 3.067106 CCGTGATCAGGTATACAATGGC 58.933 50.000 13.98 0.85 0.00 4.40
701 723 3.067106 CGTGATCAGGTATACAATGGCC 58.933 50.000 7.25 0.00 0.00 5.36
702 724 3.244215 CGTGATCAGGTATACAATGGCCT 60.244 47.826 3.32 0.00 0.00 5.19
703 725 4.021456 CGTGATCAGGTATACAATGGCCTA 60.021 45.833 3.32 0.00 0.00 3.93
704 726 5.337571 CGTGATCAGGTATACAATGGCCTAT 60.338 44.000 3.32 0.00 0.00 2.57
705 727 6.127451 CGTGATCAGGTATACAATGGCCTATA 60.127 42.308 3.32 0.00 0.00 1.31
706 728 7.417911 CGTGATCAGGTATACAATGGCCTATAT 60.418 40.741 3.32 0.00 0.00 0.86
707 729 8.924303 GTGATCAGGTATACAATGGCCTATATA 58.076 37.037 3.32 0.00 0.00 0.86
708 730 9.674705 TGATCAGGTATACAATGGCCTATATAT 57.325 33.333 3.32 0.00 0.00 0.86
733 755 9.715119 ATACTATTCCTTTTAGATTTGGCCTTT 57.285 29.630 3.32 0.00 0.00 3.11
735 757 9.541884 ACTATTCCTTTTAGATTTGGCCTTTAA 57.458 29.630 3.32 0.00 0.00 1.52
739 761 8.896320 TCCTTTTAGATTTGGCCTTTAAAAAC 57.104 30.769 3.32 0.00 0.00 2.43
740 762 8.487028 TCCTTTTAGATTTGGCCTTTAAAAACA 58.513 29.630 3.32 0.00 0.00 2.83
741 763 9.114952 CCTTTTAGATTTGGCCTTTAAAAACAA 57.885 29.630 3.32 0.00 0.00 2.83
747 769 9.062524 AGATTTGGCCTTTAAAAACAAAATACC 57.937 29.630 3.32 6.12 35.06 2.73
748 770 6.846325 TTGGCCTTTAAAAACAAAATACCG 57.154 33.333 3.32 0.00 0.00 4.02
749 771 5.298347 TGGCCTTTAAAAACAAAATACCGG 58.702 37.500 3.32 0.00 0.00 5.28
750 772 4.691685 GGCCTTTAAAAACAAAATACCGGG 59.308 41.667 6.32 0.00 0.00 5.73
751 773 4.152759 GCCTTTAAAAACAAAATACCGGGC 59.847 41.667 6.32 0.00 0.00 6.13
752 774 4.691685 CCTTTAAAAACAAAATACCGGGCC 59.308 41.667 6.32 0.00 0.00 5.80
753 775 5.511716 CCTTTAAAAACAAAATACCGGGCCT 60.512 40.000 6.32 0.00 0.00 5.19
754 776 5.548181 TTAAAAACAAAATACCGGGCCTT 57.452 34.783 6.32 0.00 0.00 4.35
755 777 4.425180 AAAAACAAAATACCGGGCCTTT 57.575 36.364 6.32 0.00 0.00 3.11
756 778 5.548181 AAAAACAAAATACCGGGCCTTTA 57.452 34.783 6.32 0.00 0.00 1.85
757 779 5.748670 AAAACAAAATACCGGGCCTTTAT 57.251 34.783 6.32 0.00 0.00 1.40
758 780 5.748670 AAACAAAATACCGGGCCTTTATT 57.251 34.783 6.32 1.08 0.00 1.40
759 781 6.854091 AAACAAAATACCGGGCCTTTATTA 57.146 33.333 6.32 0.00 0.00 0.98
760 782 6.854091 AACAAAATACCGGGCCTTTATTAA 57.146 33.333 6.32 0.00 0.00 1.40
761 783 6.459670 ACAAAATACCGGGCCTTTATTAAG 57.540 37.500 6.32 3.56 0.00 1.85
815 837 2.542595 CCGTATTGGGTCGATTAAGCAC 59.457 50.000 0.00 0.00 0.00 4.40
818 840 4.493545 CGTATTGGGTCGATTAAGCACAAC 60.494 45.833 0.00 0.00 0.00 3.32
819 841 1.816074 TGGGTCGATTAAGCACAACC 58.184 50.000 0.00 0.00 0.00 3.77
840 862 2.301870 CGCTAGAAGGTATATTGGGCCA 59.698 50.000 0.00 0.00 0.00 5.36
842 864 4.565652 CGCTAGAAGGTATATTGGGCCAAT 60.566 45.833 32.59 32.59 37.80 3.16
857 879 3.569701 GGGCCAATATAACTGGATGTGTG 59.430 47.826 4.39 0.00 35.85 3.82
858 880 3.569701 GGCCAATATAACTGGATGTGTGG 59.430 47.826 0.00 0.00 35.85 4.17
859 881 3.004734 GCCAATATAACTGGATGTGTGGC 59.995 47.826 8.14 0.00 41.93 5.01
860 882 3.250762 CCAATATAACTGGATGTGTGGCG 59.749 47.826 0.00 0.00 35.85 5.69
861 883 3.838244 ATATAACTGGATGTGTGGCGT 57.162 42.857 0.00 0.00 0.00 5.68
862 884 2.489938 ATAACTGGATGTGTGGCGTT 57.510 45.000 0.00 0.00 0.00 4.84
864 886 2.489938 AACTGGATGTGTGGCGTTAT 57.510 45.000 0.00 0.00 0.00 1.89
865 887 2.024176 ACTGGATGTGTGGCGTTATC 57.976 50.000 0.00 0.00 0.00 1.75
866 888 0.930310 CTGGATGTGTGGCGTTATCG 59.070 55.000 0.00 0.00 40.37 2.92
900 925 1.134694 GTTTTCGCGGCATCAGGTC 59.865 57.895 6.13 0.00 0.00 3.85
901 926 1.003839 TTTTCGCGGCATCAGGTCT 60.004 52.632 6.13 0.00 0.00 3.85
902 927 0.248012 TTTTCGCGGCATCAGGTCTA 59.752 50.000 6.13 0.00 0.00 2.59
903 928 0.459585 TTTCGCGGCATCAGGTCTAC 60.460 55.000 6.13 0.00 0.00 2.59
904 929 2.607668 TTCGCGGCATCAGGTCTACG 62.608 60.000 6.13 0.00 0.00 3.51
905 930 2.279517 GCGGCATCAGGTCTACGG 60.280 66.667 0.00 0.00 0.00 4.02
906 931 3.077519 GCGGCATCAGGTCTACGGT 62.078 63.158 0.00 0.00 0.00 4.83
907 932 1.065928 CGGCATCAGGTCTACGGTC 59.934 63.158 0.00 0.00 0.00 4.79
908 933 1.384989 CGGCATCAGGTCTACGGTCT 61.385 60.000 0.00 0.00 0.00 3.85
909 934 1.688772 GGCATCAGGTCTACGGTCTA 58.311 55.000 0.00 0.00 0.00 2.59
910 935 1.337387 GGCATCAGGTCTACGGTCTAC 59.663 57.143 0.00 0.00 0.00 2.59
911 936 1.337387 GCATCAGGTCTACGGTCTACC 59.663 57.143 4.13 4.13 0.00 3.18
912 937 1.955080 CATCAGGTCTACGGTCTACCC 59.045 57.143 7.90 0.00 33.53 3.69
928 953 3.122323 CCGCGCGCTCCCTAAAAA 61.122 61.111 30.48 0.00 0.00 1.94
996 1021 4.553756 AAGAAAAAGAAGAACTGCGACC 57.446 40.909 0.00 0.00 0.00 4.79
1129 1160 1.718280 ACCACCTCTTCTCCGTCTTT 58.282 50.000 0.00 0.00 0.00 2.52
1181 1218 0.526211 GGCCATGGGTTCGTTTCTTC 59.474 55.000 15.13 0.00 0.00 2.87
1195 1232 4.118410 CGTTTCTTCTAGATCTGCTGCAT 58.882 43.478 5.18 0.00 0.00 3.96
1197 1234 4.750021 TTCTTCTAGATCTGCTGCATGT 57.250 40.909 5.18 0.00 0.00 3.21
1203 1240 2.286872 AGATCTGCTGCATGTTACTGC 58.713 47.619 1.31 0.00 42.62 4.40
1212 1249 7.879677 TCTGCTGCATGTTACTGCTAATTATAT 59.120 33.333 1.31 0.00 42.75 0.86
1213 1250 8.394971 TGCTGCATGTTACTGCTAATTATATT 57.605 30.769 0.00 0.00 42.75 1.28
1214 1251 8.291740 TGCTGCATGTTACTGCTAATTATATTG 58.708 33.333 0.00 0.00 42.75 1.90
1215 1252 8.292448 GCTGCATGTTACTGCTAATTATATTGT 58.708 33.333 0.00 0.00 42.75 2.71
1231 1268 8.754991 ATTATATTGTTGATAACCCGTTTCCA 57.245 30.769 0.00 0.00 0.00 3.53
1239 1276 2.721425 AACCCGTTTCCACTGAAAGA 57.279 45.000 0.00 0.00 41.02 2.52
1263 1300 8.125448 AGATAGAATCTTGCTCGCAATTTTTAC 58.875 33.333 4.63 0.00 35.76 2.01
1269 1306 4.355543 TGCTCGCAATTTTTACCTGATC 57.644 40.909 0.00 0.00 0.00 2.92
1297 1334 2.969821 TCCCCAATGAAATATCCGGG 57.030 50.000 0.00 0.00 0.00 5.73
1313 1350 1.090052 CGGGGCAGAACTCGGATTTC 61.090 60.000 0.19 0.19 0.00 2.17
1414 1451 2.036958 TGGTGTATGGCTGCATGTAC 57.963 50.000 0.50 1.83 0.00 2.90
1447 1484 0.767375 ACCATGACACTCTTGCCACT 59.233 50.000 0.00 0.00 0.00 4.00
1466 1503 2.703007 ACTCTCAGTTTTGCAGGTCTCT 59.297 45.455 0.00 0.00 0.00 3.10
1467 1504 3.244044 ACTCTCAGTTTTGCAGGTCTCTC 60.244 47.826 0.00 0.00 0.00 3.20
1468 1505 2.968574 TCTCAGTTTTGCAGGTCTCTCT 59.031 45.455 0.00 0.00 0.00 3.10
1485 1522 4.404073 TCTCTCTACTCATGCCCTTTTCTC 59.596 45.833 0.00 0.00 0.00 2.87
1488 1525 2.100605 ACTCATGCCCTTTTCTCGTC 57.899 50.000 0.00 0.00 0.00 4.20
1508 1545 9.798994 TCTCGTCTTTCATAAATTTAGTACTCC 57.201 33.333 0.00 0.00 0.00 3.85
1509 1546 9.804758 CTCGTCTTTCATAAATTTAGTACTCCT 57.195 33.333 0.00 0.00 0.00 3.69
1565 1602 6.546034 GCCTGGATTGCTTAACTCCTTAATTA 59.454 38.462 0.00 0.00 0.00 1.40
1620 1664 7.744715 CGTTCACAAGTATAAGATGTTTTGGAC 59.255 37.037 0.00 0.00 0.00 4.02
1645 1689 5.386958 TTCAGTGTGGACTACATACAGAC 57.613 43.478 0.00 0.00 42.98 3.51
1672 1717 8.465999 TGAATGAGTGAACAAACACACTAAAAT 58.534 29.630 0.00 0.00 45.54 1.82
1673 1718 9.944663 GAATGAGTGAACAAACACACTAAAATA 57.055 29.630 0.00 0.00 45.54 1.40
1736 1782 8.867112 TCTTATATTTGTGAACGGAGTGATAC 57.133 34.615 0.00 0.00 45.00 2.24
1748 1794 6.980051 ACGGAGTGATACCATTTTACTTTC 57.020 37.500 0.00 0.00 42.51 2.62
1751 1797 7.065803 ACGGAGTGATACCATTTTACTTTCATG 59.934 37.037 0.00 0.00 42.51 3.07
1787 1833 0.529378 CCTGCACCAAGAGGCAAATC 59.471 55.000 0.00 0.00 39.93 2.17
1792 1838 2.517959 CACCAAGAGGCAAATCTGGAA 58.482 47.619 0.00 0.00 39.06 3.53
1797 1844 3.795688 AGAGGCAAATCTGGAAACTGA 57.204 42.857 0.00 0.00 42.86 3.41
1826 1873 9.994432 CACATTATCATTTAAAGACCAAGACTC 57.006 33.333 0.00 0.00 0.00 3.36
1841 1888 7.123847 AGACCAAGACTCGTATTAAGTTACCAT 59.876 37.037 0.00 0.00 0.00 3.55
1842 1889 7.039882 ACCAAGACTCGTATTAAGTTACCATG 58.960 38.462 0.00 0.00 0.00 3.66
1863 1910 5.689383 TGCTCAGTACTTTGGTTGATTTC 57.311 39.130 0.00 0.00 0.00 2.17
1910 1957 7.956420 TTCTTATAACCTAACACTGTGTGTG 57.044 36.000 15.11 9.99 46.79 3.82
2027 2076 4.696479 ATCACATGTCTCCATAGTTCCC 57.304 45.455 0.00 0.00 0.00 3.97
2030 2079 4.162320 TCACATGTCTCCATAGTTCCCTTC 59.838 45.833 0.00 0.00 0.00 3.46
2033 2082 5.104735 ACATGTCTCCATAGTTCCCTTCTTC 60.105 44.000 0.00 0.00 0.00 2.87
2041 2090 2.707554 AGTTCCCTTCTTCTTCACCCT 58.292 47.619 0.00 0.00 0.00 4.34
2089 2141 4.938226 CCTCCTTTGTCTCCATTCTTGTAC 59.062 45.833 0.00 0.00 0.00 2.90
2094 2146 3.791320 TGTCTCCATTCTTGTACTCCCT 58.209 45.455 0.00 0.00 0.00 4.20
2097 2149 2.101582 CTCCATTCTTGTACTCCCTCCG 59.898 54.545 0.00 0.00 0.00 4.63
2103 2261 1.893801 CTTGTACTCCCTCCGTTCACT 59.106 52.381 0.00 0.00 0.00 3.41
2174 2334 7.275341 TGAAATGAGCAAACAAACACACTAAAG 59.725 33.333 0.00 0.00 0.00 1.85
2240 2400 3.657398 TGATAGTGAACGGAGGGAGTA 57.343 47.619 0.00 0.00 0.00 2.59
2241 2401 3.552875 TGATAGTGAACGGAGGGAGTAG 58.447 50.000 0.00 0.00 0.00 2.57
2376 2537 5.120674 GTGCATGAATTTCAAACTTTAGGGC 59.879 40.000 2.68 0.00 0.00 5.19
2379 2540 3.892588 TGAATTTCAAACTTTAGGGCCGT 59.107 39.130 2.24 2.24 0.00 5.68
2396 2557 7.039313 AGGGCCGTCAATTCTTTAATTTATC 57.961 36.000 0.00 0.00 32.87 1.75
2437 2727 8.017418 TGTTCAATATTATTCCCCAATTGTCC 57.983 34.615 4.43 0.00 0.00 4.02
2508 2798 5.801012 GCTGAAGCGGAAGAATTAAAGTAG 58.199 41.667 0.00 0.00 0.00 2.57
2512 2802 6.529125 TGAAGCGGAAGAATTAAAGTAGTACG 59.471 38.462 0.00 0.00 0.00 3.67
2514 2804 7.088589 AGCGGAAGAATTAAAGTAGTACGTA 57.911 36.000 0.00 0.00 0.00 3.57
2516 2806 6.969473 GCGGAAGAATTAAAGTAGTACGTACT 59.031 38.462 29.62 29.62 44.51 2.73
2590 3133 4.425180 TTACCAGTGAACTTGGTTAGCA 57.575 40.909 1.84 0.00 37.16 3.49
2609 3152 8.704234 GGTTAGCATATCGTTCTTCTATTCTTG 58.296 37.037 0.00 0.00 0.00 3.02
2664 3225 3.070748 GGAGGAGCTGTTTGAAAGTCTC 58.929 50.000 0.00 0.00 0.00 3.36
2781 3342 7.645058 TGAACTTCAAATCTCAACCTTCTTT 57.355 32.000 0.00 0.00 0.00 2.52
2818 3379 7.710896 AGTCTTCTTGATTTTCAGGACAAAAG 58.289 34.615 0.00 0.00 31.94 2.27
2853 3415 6.422333 TGAAATATCCCACAACTCTGCAATA 58.578 36.000 0.00 0.00 0.00 1.90
2956 3518 7.324935 TGTACGCAGATAACCTTTCTAAATGA 58.675 34.615 0.00 0.00 0.00 2.57
3053 3615 4.879598 AGAAGTACAGGGTCAAACTTACG 58.120 43.478 0.00 0.00 32.51 3.18
3223 3785 9.781834 CAAATAGTAGTGTCTAAGAGTCAAGAG 57.218 37.037 0.00 0.00 0.00 2.85
3227 3789 8.326680 AGTAGTGTCTAAGAGTCAAGAGTAAC 57.673 38.462 0.00 0.00 0.00 2.50
3231 3800 7.068348 AGTGTCTAAGAGTCAAGAGTAACACAA 59.932 37.037 13.18 0.00 0.00 3.33
3243 3812 4.286032 AGAGTAACACAAATGGGCTCTGTA 59.714 41.667 0.00 0.00 33.76 2.74
3275 3844 6.811170 TGAACTGTTTCAACCAAGTTTGAATC 59.189 34.615 0.00 0.54 43.38 2.52
3351 3920 5.826208 TGATGAAACAGCTCAGAATATGCAT 59.174 36.000 3.79 3.79 0.00 3.96
3385 3954 4.348020 TCAGGTTATCCAGGAGGTAACT 57.652 45.455 11.29 0.00 44.00 2.24
3446 4015 8.177119 TGCATATGACTGTTTTTAAAAGGTCT 57.823 30.769 20.61 13.68 0.00 3.85
3538 4107 2.124122 CCAACTTTGGTGCGTTTTAGC 58.876 47.619 0.00 0.00 43.43 3.09
3553 4122 0.476338 TTAGCTGGGGAACTTGCACA 59.524 50.000 0.00 0.00 0.00 4.57
3600 4169 6.241207 AGTCACATGGTAAGTTTGAATTCG 57.759 37.500 0.04 0.00 0.00 3.34
3810 4379 1.305930 AATCGAGTGGAAAAGGCCGC 61.306 55.000 0.00 0.00 38.73 6.53
4015 4584 7.016072 CCAAGACTGGATCAGATAGTTCCTTAT 59.984 40.741 1.59 0.00 46.92 1.73
4119 4689 2.571653 CCAGACTTGGTCCTGTTATGGA 59.428 50.000 11.66 0.00 39.79 3.41
4135 4705 5.047377 TGTTATGGAGCCAGTTTGATTTTCC 60.047 40.000 0.00 0.00 0.00 3.13
4139 4709 4.408596 TGGAGCCAGTTTGATTTTCCTTTT 59.591 37.500 0.00 0.00 0.00 2.27
4140 4710 5.600484 TGGAGCCAGTTTGATTTTCCTTTTA 59.400 36.000 0.00 0.00 0.00 1.52
4161 4731 1.661341 AGGAATCTGCTGCGCTTTAG 58.339 50.000 9.73 3.84 0.00 1.85
4168 4738 4.118093 TCTGCTGCGCTTTAGTACATTA 57.882 40.909 9.73 0.00 0.00 1.90
4213 4783 3.874543 CACCATAGCGTTTACATAGCCAA 59.125 43.478 0.00 0.00 0.00 4.52
4244 4814 0.035534 TGCCAATACGTGCTCCATGT 60.036 50.000 0.00 0.00 37.38 3.21
4265 4835 1.063174 GCTGCTAAGCCATGAAGAACG 59.937 52.381 0.00 0.00 44.22 3.95
4298 4868 3.527533 TCTACTGCAAGAAACAACACGT 58.472 40.909 0.00 0.00 37.43 4.49
4383 4953 1.134521 TCCGACCCATTTCCAAGATCG 60.135 52.381 0.00 0.00 0.00 3.69
4607 5576 2.740826 CGTCGGTGCCGGATGTTT 60.741 61.111 5.05 0.00 40.25 2.83
4608 5577 2.322081 CGTCGGTGCCGGATGTTTT 61.322 57.895 5.05 0.00 40.25 2.43
4609 5578 1.847890 CGTCGGTGCCGGATGTTTTT 61.848 55.000 5.05 0.00 40.25 1.94
4632 5601 2.570442 TTTTTGAACTTCCACGGTGC 57.430 45.000 1.68 0.00 0.00 5.01
4643 5612 1.667830 CACGGTGCTGGATGTTCGT 60.668 57.895 0.00 0.00 0.00 3.85
4691 5660 2.810274 AGCGCCACAGCATCATATTTAG 59.190 45.455 2.29 0.00 39.83 1.85
4702 5671 5.305644 AGCATCATATTTAGTCCCTTCGTCT 59.694 40.000 0.00 0.00 0.00 4.18
4713 5682 3.858238 GTCCCTTCGTCTCGAATTACTTG 59.142 47.826 5.10 0.00 44.85 3.16
4728 5697 9.878667 TCGAATTACTTGTTGTAGAAATGGATA 57.121 29.630 0.00 0.00 32.08 2.59
4795 5764 3.404899 TCCGTGACAAGTAATTTGGGAC 58.595 45.455 0.00 0.00 41.25 4.46
4800 5769 2.486592 GACAAGTAATTTGGGACGGTGG 59.513 50.000 0.00 0.00 41.25 4.61
4827 5796 1.899437 TTCCTAGGGAGCCGCAACTG 61.899 60.000 9.46 0.00 31.21 3.16
4837 5806 1.284297 GCCGCAACTGCCAAATCAAC 61.284 55.000 0.00 0.00 37.91 3.18
4846 5815 0.389817 GCCAAATCAACTTTCGGGGC 60.390 55.000 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.975556 TCAGCCTTGGCGTGGATCTA 60.976 55.000 5.95 0.00 0.00 1.98
30 31 1.675641 GTTCAGCCTTGGCGTGGAT 60.676 57.895 5.95 0.00 0.00 3.41
53 54 4.329545 GACTCCACTTGGGCGCCA 62.330 66.667 30.85 12.04 36.21 5.69
96 97 2.522436 TGGTGGTCGACGGAAGGT 60.522 61.111 9.92 0.00 0.00 3.50
125 126 2.605837 TGTTCGTGGCTCTTGTGTTA 57.394 45.000 0.00 0.00 0.00 2.41
174 176 2.283529 CGGTCCCTACTGCTGGTGT 61.284 63.158 0.00 0.00 0.00 4.16
177 179 4.162690 GCCGGTCCCTACTGCTGG 62.163 72.222 1.90 0.00 0.00 4.85
183 185 0.611714 TTCTTCTTGCCGGTCCCTAC 59.388 55.000 1.90 0.00 0.00 3.18
189 191 0.951040 CGCTTCTTCTTCTTGCCGGT 60.951 55.000 1.90 0.00 0.00 5.28
190 192 1.639298 CCGCTTCTTCTTCTTGCCGG 61.639 60.000 0.00 0.00 0.00 6.13
204 206 1.084370 GCTCTGTTATGTCGCCGCTT 61.084 55.000 0.00 0.00 0.00 4.68
212 214 1.202268 GCTACCGTCGCTCTGTTATGT 60.202 52.381 0.00 0.00 0.00 2.29
232 234 2.633657 GTCTGGTGTGCTTGTGCG 59.366 61.111 0.00 0.00 43.34 5.34
289 291 2.003658 CTCTCACTCTCTCAGCCCGC 62.004 65.000 0.00 0.00 0.00 6.13
382 391 1.433879 GCTCATCTGTCGCTACCGT 59.566 57.895 0.00 0.00 35.54 4.83
384 393 1.946650 GCGCTCATCTGTCGCTACC 60.947 63.158 0.00 0.00 44.79 3.18
450 471 2.101917 CCCATGGAAATCACCAGATTGC 59.898 50.000 15.22 0.00 43.52 3.56
468 489 2.230653 CCAGTCATGTGGGACCCCA 61.231 63.158 8.45 3.10 45.02 4.96
469 490 2.677228 CCAGTCATGTGGGACCCC 59.323 66.667 8.45 2.69 38.59 4.95
496 518 3.181467 CCACTGCTTTGTTTGGATTTGGA 60.181 43.478 0.00 0.00 0.00 3.53
501 523 1.412079 TGCCACTGCTTTGTTTGGAT 58.588 45.000 0.00 0.00 38.71 3.41
509 531 7.441017 TGTATTTTCTTATTTGCCACTGCTTT 58.559 30.769 0.00 0.00 38.71 3.51
542 564 3.426159 CGCACTTTGACGATTAGCCATTT 60.426 43.478 0.00 0.00 0.00 2.32
544 566 1.665679 CGCACTTTGACGATTAGCCAT 59.334 47.619 0.00 0.00 0.00 4.40
571 593 6.048509 GGGATTTTGATATTTTGCCACGATT 58.951 36.000 0.00 0.00 0.00 3.34
572 594 5.453198 GGGGATTTTGATATTTTGCCACGAT 60.453 40.000 0.00 0.00 0.00 3.73
593 615 2.285977 GGCTGTAGAAATTGTACGGGG 58.714 52.381 10.53 0.00 0.00 5.73
594 616 1.931172 CGGCTGTAGAAATTGTACGGG 59.069 52.381 10.53 1.16 0.00 5.28
595 617 2.601763 GACGGCTGTAGAAATTGTACGG 59.398 50.000 0.00 4.90 0.00 4.02
596 618 3.508762 AGACGGCTGTAGAAATTGTACG 58.491 45.455 0.00 0.00 0.00 3.67
597 619 4.745649 AGAGACGGCTGTAGAAATTGTAC 58.254 43.478 0.00 0.00 0.00 2.90
598 620 5.185249 AGAAGAGACGGCTGTAGAAATTGTA 59.815 40.000 0.00 0.00 0.00 2.41
599 621 3.963428 AGAGACGGCTGTAGAAATTGT 57.037 42.857 0.00 0.00 0.00 2.71
600 622 4.499183 AGAAGAGACGGCTGTAGAAATTG 58.501 43.478 0.00 0.00 0.00 2.32
601 623 4.810191 AGAAGAGACGGCTGTAGAAATT 57.190 40.909 0.00 0.00 0.00 1.82
602 624 4.810191 AAGAAGAGACGGCTGTAGAAAT 57.190 40.909 0.00 0.00 0.00 2.17
603 625 4.038763 TCAAAGAAGAGACGGCTGTAGAAA 59.961 41.667 0.00 0.00 0.00 2.52
604 626 3.572682 TCAAAGAAGAGACGGCTGTAGAA 59.427 43.478 0.00 0.00 0.00 2.10
605 627 3.154710 TCAAAGAAGAGACGGCTGTAGA 58.845 45.455 0.00 0.00 0.00 2.59
606 628 3.506810 CTCAAAGAAGAGACGGCTGTAG 58.493 50.000 0.00 0.00 37.87 2.74
607 629 2.352814 GCTCAAAGAAGAGACGGCTGTA 60.353 50.000 0.00 0.00 37.87 2.74
608 630 1.606737 GCTCAAAGAAGAGACGGCTGT 60.607 52.381 0.00 0.00 37.87 4.40
609 631 1.074752 GCTCAAAGAAGAGACGGCTG 58.925 55.000 0.00 0.00 37.87 4.85
610 632 0.036858 GGCTCAAAGAAGAGACGGCT 60.037 55.000 0.00 0.00 37.87 5.52
611 633 2.461416 GGCTCAAAGAAGAGACGGC 58.539 57.895 0.00 0.00 37.87 5.68
614 636 3.186119 CTCGATGGCTCAAAGAAGAGAC 58.814 50.000 0.00 0.00 44.21 3.36
615 637 2.828520 ACTCGATGGCTCAAAGAAGAGA 59.171 45.455 0.00 0.00 37.87 3.10
616 638 3.244033 ACTCGATGGCTCAAAGAAGAG 57.756 47.619 0.00 0.00 38.68 2.85
617 639 3.006859 TGAACTCGATGGCTCAAAGAAGA 59.993 43.478 0.00 0.00 0.00 2.87
618 640 3.329386 TGAACTCGATGGCTCAAAGAAG 58.671 45.455 0.00 0.00 0.00 2.85
619 641 3.401033 TGAACTCGATGGCTCAAAGAA 57.599 42.857 0.00 0.00 0.00 2.52
620 642 3.401033 TTGAACTCGATGGCTCAAAGA 57.599 42.857 0.00 0.00 0.00 2.52
621 643 3.499918 AGTTTGAACTCGATGGCTCAAAG 59.500 43.478 10.03 0.00 38.19 2.77
622 644 3.476552 AGTTTGAACTCGATGGCTCAAA 58.523 40.909 7.06 7.06 35.88 2.69
623 645 3.067106 GAGTTTGAACTCGATGGCTCAA 58.933 45.455 8.02 0.00 45.11 3.02
624 646 2.688507 GAGTTTGAACTCGATGGCTCA 58.311 47.619 8.02 0.00 45.11 4.26
643 665 0.800012 GCCCGCGTAACTCAAAATGA 59.200 50.000 4.92 0.00 0.00 2.57
644 666 0.802494 AGCCCGCGTAACTCAAAATG 59.198 50.000 4.92 0.00 0.00 2.32
645 667 0.802494 CAGCCCGCGTAACTCAAAAT 59.198 50.000 4.92 0.00 0.00 1.82
646 668 1.231958 CCAGCCCGCGTAACTCAAAA 61.232 55.000 4.92 0.00 0.00 2.44
647 669 1.669760 CCAGCCCGCGTAACTCAAA 60.670 57.895 4.92 0.00 0.00 2.69
648 670 2.047655 CCAGCCCGCGTAACTCAA 60.048 61.111 4.92 0.00 0.00 3.02
649 671 3.291101 GACCAGCCCGCGTAACTCA 62.291 63.158 4.92 0.00 0.00 3.41
650 672 2.508663 GACCAGCCCGCGTAACTC 60.509 66.667 4.92 0.00 0.00 3.01
651 673 4.078516 GGACCAGCCCGCGTAACT 62.079 66.667 4.92 0.00 0.00 2.24
652 674 4.382320 TGGACCAGCCCGCGTAAC 62.382 66.667 4.92 0.00 34.97 2.50
653 675 4.077184 CTGGACCAGCCCGCGTAA 62.077 66.667 8.99 0.00 34.97 3.18
657 679 3.842925 TTTCACTGGACCAGCCCGC 62.843 63.158 21.95 0.00 34.37 6.13
658 680 1.966451 GTTTCACTGGACCAGCCCG 60.966 63.158 21.95 10.41 34.37 6.13
659 681 1.966451 CGTTTCACTGGACCAGCCC 60.966 63.158 21.95 4.11 34.37 5.19
660 682 1.966451 CCGTTTCACTGGACCAGCC 60.966 63.158 21.95 3.76 34.37 4.85
661 683 2.617274 GCCGTTTCACTGGACCAGC 61.617 63.158 21.95 3.67 34.37 4.85
662 684 1.966451 GGCCGTTTCACTGGACCAG 60.966 63.158 20.45 20.45 37.52 4.00
663 685 2.112297 GGCCGTTTCACTGGACCA 59.888 61.111 0.00 0.00 0.00 4.02
664 686 3.047877 CGGCCGTTTCACTGGACC 61.048 66.667 19.50 0.00 0.00 4.46
665 687 2.280592 ACGGCCGTTTCACTGGAC 60.281 61.111 28.70 0.00 0.00 4.02
666 688 2.107041 ATCACGGCCGTTTCACTGGA 62.107 55.000 32.11 21.53 0.00 3.86
667 689 1.635663 GATCACGGCCGTTTCACTGG 61.636 60.000 32.11 16.24 0.00 4.00
668 690 0.948623 TGATCACGGCCGTTTCACTG 60.949 55.000 32.11 17.14 0.00 3.66
669 691 0.670546 CTGATCACGGCCGTTTCACT 60.671 55.000 32.11 11.52 0.00 3.41
670 692 1.635663 CCTGATCACGGCCGTTTCAC 61.636 60.000 32.11 20.05 0.00 3.18
671 693 1.375396 CCTGATCACGGCCGTTTCA 60.375 57.895 32.11 30.26 0.00 2.69
672 694 0.108520 TACCTGATCACGGCCGTTTC 60.109 55.000 32.11 27.39 0.00 2.78
673 695 0.539986 ATACCTGATCACGGCCGTTT 59.460 50.000 32.11 20.13 0.00 3.60
674 696 1.068127 GTATACCTGATCACGGCCGTT 59.932 52.381 32.11 16.90 0.00 4.44
675 697 0.672342 GTATACCTGATCACGGCCGT 59.328 55.000 28.70 28.70 0.00 5.68
676 698 0.671796 TGTATACCTGATCACGGCCG 59.328 55.000 26.86 26.86 0.00 6.13
677 699 2.902705 TTGTATACCTGATCACGGCC 57.097 50.000 10.15 0.00 0.00 6.13
678 700 3.067106 CCATTGTATACCTGATCACGGC 58.933 50.000 10.15 0.00 0.00 5.68
679 701 3.067106 GCCATTGTATACCTGATCACGG 58.933 50.000 0.00 9.01 0.00 4.94
680 702 3.067106 GGCCATTGTATACCTGATCACG 58.933 50.000 0.00 0.00 0.00 4.35
681 703 4.357918 AGGCCATTGTATACCTGATCAC 57.642 45.455 5.01 0.00 0.00 3.06
682 704 7.995052 ATATAGGCCATTGTATACCTGATCA 57.005 36.000 5.01 0.00 33.60 2.92
707 729 9.715119 AAAGGCCAAATCTAAAAGGAATAGTAT 57.285 29.630 5.01 0.00 0.00 2.12
709 731 9.541884 TTAAAGGCCAAATCTAAAAGGAATAGT 57.458 29.630 5.01 0.00 0.00 2.12
713 735 9.332502 GTTTTTAAAGGCCAAATCTAAAAGGAA 57.667 29.630 5.01 0.00 0.00 3.36
714 736 8.487028 TGTTTTTAAAGGCCAAATCTAAAAGGA 58.513 29.630 5.01 0.00 0.00 3.36
715 737 8.669946 TGTTTTTAAAGGCCAAATCTAAAAGG 57.330 30.769 5.01 0.00 0.00 3.11
721 743 9.062524 GGTATTTTGTTTTTAAAGGCCAAATCT 57.937 29.630 5.01 0.00 0.00 2.40
722 744 8.012809 CGGTATTTTGTTTTTAAAGGCCAAATC 58.987 33.333 5.01 0.00 0.00 2.17
723 745 7.041030 CCGGTATTTTGTTTTTAAAGGCCAAAT 60.041 33.333 5.01 0.17 0.00 2.32
724 746 6.260271 CCGGTATTTTGTTTTTAAAGGCCAAA 59.740 34.615 5.01 0.00 0.00 3.28
725 747 5.758784 CCGGTATTTTGTTTTTAAAGGCCAA 59.241 36.000 5.01 0.00 0.00 4.52
726 748 5.298347 CCGGTATTTTGTTTTTAAAGGCCA 58.702 37.500 5.01 0.00 0.00 5.36
727 749 4.691685 CCCGGTATTTTGTTTTTAAAGGCC 59.308 41.667 0.00 0.00 0.00 5.19
728 750 4.152759 GCCCGGTATTTTGTTTTTAAAGGC 59.847 41.667 0.00 0.00 0.00 4.35
729 751 4.691685 GGCCCGGTATTTTGTTTTTAAAGG 59.308 41.667 0.00 0.00 0.00 3.11
730 752 5.543714 AGGCCCGGTATTTTGTTTTTAAAG 58.456 37.500 0.00 0.00 0.00 1.85
731 753 5.548181 AGGCCCGGTATTTTGTTTTTAAA 57.452 34.783 0.00 0.00 0.00 1.52
732 754 5.548181 AAGGCCCGGTATTTTGTTTTTAA 57.452 34.783 0.00 0.00 0.00 1.52
733 755 5.548181 AAAGGCCCGGTATTTTGTTTTTA 57.452 34.783 0.00 0.00 0.00 1.52
734 756 4.425180 AAAGGCCCGGTATTTTGTTTTT 57.575 36.364 0.00 0.00 0.00 1.94
735 757 5.748670 ATAAAGGCCCGGTATTTTGTTTT 57.251 34.783 0.00 0.00 0.00 2.43
736 758 5.748670 AATAAAGGCCCGGTATTTTGTTT 57.251 34.783 0.00 0.00 0.00 2.83
737 759 6.664384 TCTTAATAAAGGCCCGGTATTTTGTT 59.336 34.615 0.00 5.03 33.22 2.83
738 760 6.189133 TCTTAATAAAGGCCCGGTATTTTGT 58.811 36.000 0.00 0.00 33.22 2.83
739 761 6.702716 TCTTAATAAAGGCCCGGTATTTTG 57.297 37.500 0.00 0.00 33.22 2.44
740 762 7.721409 TTTCTTAATAAAGGCCCGGTATTTT 57.279 32.000 0.00 0.00 33.22 1.82
741 763 7.721409 TTTTCTTAATAAAGGCCCGGTATTT 57.279 32.000 0.00 0.54 33.22 1.40
742 764 7.721409 TTTTTCTTAATAAAGGCCCGGTATT 57.279 32.000 0.00 3.68 33.22 1.89
743 765 7.907841 ATTTTTCTTAATAAAGGCCCGGTAT 57.092 32.000 0.00 0.00 33.22 2.73
744 766 7.833183 TGTATTTTTCTTAATAAAGGCCCGGTA 59.167 33.333 0.00 0.00 33.22 4.02
745 767 6.664384 TGTATTTTTCTTAATAAAGGCCCGGT 59.336 34.615 0.00 0.00 33.22 5.28
746 768 7.102847 TGTATTTTTCTTAATAAAGGCCCGG 57.897 36.000 0.00 0.00 33.22 5.73
747 769 9.673454 GTATGTATTTTTCTTAATAAAGGCCCG 57.327 33.333 0.00 0.00 33.22 6.13
756 778 9.646522 ATCAGCCCAGTATGTATTTTTCTTAAT 57.353 29.630 0.00 0.00 0.00 1.40
757 779 9.474313 AATCAGCCCAGTATGTATTTTTCTTAA 57.526 29.630 0.00 0.00 0.00 1.85
759 781 7.961326 AATCAGCCCAGTATGTATTTTTCTT 57.039 32.000 0.00 0.00 0.00 2.52
760 782 9.646522 AATAATCAGCCCAGTATGTATTTTTCT 57.353 29.630 0.00 0.00 0.00 2.52
815 837 4.315803 CCCAATATACCTTCTAGCGGTTG 58.684 47.826 8.56 0.00 35.98 3.77
818 840 2.354805 GGCCCAATATACCTTCTAGCGG 60.355 54.545 0.00 0.00 0.00 5.52
819 841 2.301870 TGGCCCAATATACCTTCTAGCG 59.698 50.000 0.00 0.00 0.00 4.26
840 862 4.150897 ACGCCACACATCCAGTTATATT 57.849 40.909 0.00 0.00 0.00 1.28
842 864 3.620427 AACGCCACACATCCAGTTATA 57.380 42.857 0.00 0.00 0.00 0.98
857 879 1.202428 AGAGCCTCTTTCGATAACGCC 60.202 52.381 0.00 0.00 39.58 5.68
858 880 2.211353 AGAGCCTCTTTCGATAACGC 57.789 50.000 0.00 0.00 39.58 4.84
859 881 3.301706 GCTAGAGCCTCTTTCGATAACG 58.698 50.000 0.00 0.00 36.54 3.18
911 936 3.122323 TTTTTAGGGAGCGCGCGG 61.122 61.111 33.06 13.66 0.00 6.46
926 951 2.030958 CGCGCGGGTAGACCTTTTT 61.031 57.895 24.84 0.00 36.97 1.94
927 952 2.433664 CGCGCGGGTAGACCTTTT 60.434 61.111 24.84 0.00 36.97 2.27
982 1007 1.135257 CATCTCGGTCGCAGTTCTTCT 60.135 52.381 0.00 0.00 0.00 2.85
986 1011 2.167861 GCCATCTCGGTCGCAGTTC 61.168 63.158 0.00 0.00 36.97 3.01
1129 1160 6.205784 CAAACCGAAAGCTAAAATCAACAGA 58.794 36.000 0.00 0.00 0.00 3.41
1169 1200 4.564769 CAGCAGATCTAGAAGAAACGAACC 59.435 45.833 0.00 0.00 0.00 3.62
1170 1201 4.032331 GCAGCAGATCTAGAAGAAACGAAC 59.968 45.833 0.00 0.00 0.00 3.95
1181 1218 3.493877 GCAGTAACATGCAGCAGATCTAG 59.506 47.826 0.00 0.00 45.77 2.43
1212 1249 3.566322 CAGTGGAAACGGGTTATCAACAA 59.434 43.478 0.00 0.00 0.00 2.83
1213 1250 3.142951 CAGTGGAAACGGGTTATCAACA 58.857 45.455 0.00 0.00 0.00 3.33
1214 1251 3.404899 TCAGTGGAAACGGGTTATCAAC 58.595 45.455 0.00 0.00 0.00 3.18
1215 1252 3.773418 TCAGTGGAAACGGGTTATCAA 57.227 42.857 0.00 0.00 0.00 2.57
1239 1276 7.067494 AGGTAAAAATTGCGAGCAAGATTCTAT 59.933 33.333 15.90 6.86 39.47 1.98
1257 1294 0.446222 GCGCGCAGATCAGGTAAAAA 59.554 50.000 29.10 0.00 0.00 1.94
1263 1300 3.344215 GGATGCGCGCAGATCAGG 61.344 66.667 38.44 0.00 0.00 3.86
1269 1306 4.260355 CATTGGGGATGCGCGCAG 62.260 66.667 38.44 18.93 0.00 5.18
1313 1350 9.219603 TCTAATATTTCTGCTTAATCCATTCGG 57.780 33.333 0.00 0.00 0.00 4.30
1379 1416 3.402681 CATGGGACCTGCGGGAGT 61.403 66.667 21.41 0.00 36.25 3.85
1423 1460 2.027192 GGCAAGAGTGTCATGGTAGGAA 60.027 50.000 0.00 0.00 0.00 3.36
1447 1484 2.968574 AGAGAGACCTGCAAAACTGAGA 59.031 45.455 0.00 0.00 0.00 3.27
1466 1503 2.832129 ACGAGAAAAGGGCATGAGTAGA 59.168 45.455 0.00 0.00 0.00 2.59
1467 1504 3.118956 AGACGAGAAAAGGGCATGAGTAG 60.119 47.826 0.00 0.00 0.00 2.57
1468 1505 2.832129 AGACGAGAAAAGGGCATGAGTA 59.168 45.455 0.00 0.00 0.00 2.59
1505 1542 2.740981 CAGCAGTCAAGCAAACTAGGAG 59.259 50.000 0.00 0.00 36.85 3.69
1508 1545 2.350197 GCACAGCAGTCAAGCAAACTAG 60.350 50.000 0.00 0.00 36.85 2.57
1509 1546 1.603802 GCACAGCAGTCAAGCAAACTA 59.396 47.619 0.00 0.00 36.85 2.24
1510 1547 0.383231 GCACAGCAGTCAAGCAAACT 59.617 50.000 0.00 0.00 36.85 2.66
1511 1548 0.383231 AGCACAGCAGTCAAGCAAAC 59.617 50.000 0.00 0.00 36.85 2.93
1512 1549 1.105457 AAGCACAGCAGTCAAGCAAA 58.895 45.000 0.00 0.00 36.85 3.68
1513 1550 0.382873 CAAGCACAGCAGTCAAGCAA 59.617 50.000 0.00 0.00 36.85 3.91
1565 1602 5.621193 AGTATGTCACAGCAACCTAAACTT 58.379 37.500 0.00 0.00 0.00 2.66
1620 1664 6.311445 GTCTGTATGTAGTCCACACTGAAATG 59.689 42.308 0.00 0.00 40.86 2.32
1627 1671 5.386958 TTCAGTCTGTATGTAGTCCACAC 57.613 43.478 0.00 0.00 40.86 3.82
1645 1689 5.490139 AGTGTGTTTGTTCACTCATTCAG 57.510 39.130 0.00 0.00 40.28 3.02
1748 1794 6.880822 CAGGATGCAAGTAATTTGTTCATG 57.119 37.500 0.00 0.00 39.08 3.07
1823 1870 6.127423 ACTGAGCATGGTAACTTAATACGAGT 60.127 38.462 0.00 0.00 37.61 4.18
1826 1873 7.201145 AGTACTGAGCATGGTAACTTAATACG 58.799 38.462 0.00 0.00 37.61 3.06
1841 1888 4.213270 CGAAATCAACCAAAGTACTGAGCA 59.787 41.667 0.00 0.00 0.00 4.26
1842 1889 4.378459 CCGAAATCAACCAAAGTACTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
1863 1910 4.003648 ACTATGCTTGTTTCTTTCCTCCG 58.996 43.478 0.00 0.00 0.00 4.63
1909 1956 0.397941 CTCAAGGGCTGAGGTTCACA 59.602 55.000 0.00 0.00 46.89 3.58
1910 1957 3.239861 CTCAAGGGCTGAGGTTCAC 57.760 57.895 0.00 0.00 46.89 3.18
1918 1965 3.012518 CTGTCCATAAACTCAAGGGCTG 58.987 50.000 0.00 0.00 0.00 4.85
1949 1996 5.104900 GACAAGATGTCTGTACCATAGGGTT 60.105 44.000 3.46 0.00 43.94 4.11
1951 1998 4.950050 GACAAGATGTCTGTACCATAGGG 58.050 47.826 3.31 0.00 43.73 3.53
2012 2060 4.689062 AGAAGAAGGGAACTATGGAGACA 58.311 43.478 0.00 0.00 44.34 3.41
2027 2076 0.610687 AGCGGAGGGTGAAGAAGAAG 59.389 55.000 0.00 0.00 0.00 2.85
2030 2079 1.078848 CCAGCGGAGGGTGAAGAAG 60.079 63.158 0.00 0.00 44.37 2.85
2033 2082 4.785453 GGCCAGCGGAGGGTGAAG 62.785 72.222 0.00 0.00 44.37 3.02
2089 2141 6.896021 TCTTATAATAGTGAACGGAGGGAG 57.104 41.667 0.00 0.00 0.00 4.30
2094 2146 9.104965 CCAAAACATCTTATAATAGTGAACGGA 57.895 33.333 0.00 0.00 0.00 4.69
2144 2304 5.105797 TGTGTTTGTTTGCTCATTTCAGTCT 60.106 36.000 0.00 0.00 0.00 3.24
2221 2381 3.553904 ACTACTCCCTCCGTTCACTATC 58.446 50.000 0.00 0.00 0.00 2.08
2240 2400 3.402628 ACACGGAAGCAGTTATGAACT 57.597 42.857 0.00 0.00 44.06 3.01
2241 2401 4.243270 AGTACACGGAAGCAGTTATGAAC 58.757 43.478 0.00 0.00 0.00 3.18
2293 2453 7.762159 TGGCAGAAACTGGTTTTTAAACTAAAG 59.238 33.333 5.43 4.27 38.89 1.85
2311 2472 2.440409 GGAGCTCTCAAATGGCAGAAA 58.560 47.619 14.64 0.00 0.00 2.52
2437 2727 5.777802 CATTACCATGCTACTCTAGGACTG 58.222 45.833 0.00 0.00 0.00 3.51
2505 2795 9.665264 ACAACTTGTTAACTAAGTACGTACTAC 57.335 33.333 27.59 20.15 37.39 2.73
2508 2798 8.560576 TCACAACTTGTTAACTAAGTACGTAC 57.439 34.615 18.10 18.10 37.39 3.67
2512 2802 9.577003 CGATTTCACAACTTGTTAACTAAGTAC 57.423 33.333 17.85 0.00 37.39 2.73
2514 2804 7.130269 GCGATTTCACAACTTGTTAACTAAGT 58.870 34.615 7.22 11.45 39.92 2.24
2516 2806 6.432107 GGCGATTTCACAACTTGTTAACTAA 58.568 36.000 7.22 0.00 0.00 2.24
2609 3152 4.390297 CCTTCAAGGTCTTCGAATCTGTTC 59.610 45.833 0.00 0.00 0.00 3.18
2664 3225 4.277672 CACCCAATGGAGCTATTCATCTTG 59.722 45.833 0.00 0.00 34.81 3.02
2818 3379 9.736023 GTTGTGGGATATTTCATTCAGATTAAC 57.264 33.333 0.00 0.00 0.00 2.01
2853 3415 5.570320 TCAATAGCTTTTCTAACAAGGCCT 58.430 37.500 0.00 0.00 29.01 5.19
2887 3449 9.841295 AACAAAATAACTTACCTCTGTCAGTAA 57.159 29.630 0.00 0.00 28.92 2.24
2926 3488 6.349300 AGAAAGGTTATCTGCGTACATGAAT 58.651 36.000 0.00 0.00 0.00 2.57
3164 3726 0.308993 GGCATCAAAGTAGCCGCATC 59.691 55.000 0.00 0.00 38.86 3.91
3196 3758 8.244802 TCTTGACTCTTAGACACTACTATTTGC 58.755 37.037 0.00 0.00 0.00 3.68
3223 3785 5.183140 ACAATACAGAGCCCATTTGTGTTAC 59.817 40.000 0.00 0.00 0.00 2.50
3225 3787 4.151883 ACAATACAGAGCCCATTTGTGTT 58.848 39.130 0.00 0.00 0.00 3.32
3227 3789 4.789012 AACAATACAGAGCCCATTTGTG 57.211 40.909 0.00 0.00 0.00 3.33
3231 3800 6.319658 CAGTTCATAACAATACAGAGCCCATT 59.680 38.462 0.00 0.00 0.00 3.16
3243 3812 7.781056 ACTTGGTTGAAACAGTTCATAACAAT 58.219 30.769 8.60 0.00 43.29 2.71
3275 3844 3.192001 AGTGACCTGCAATGCATAAACAG 59.808 43.478 8.91 8.06 38.13 3.16
3351 3920 6.174720 GGATAACCTGATCCAGTGTTCATA 57.825 41.667 0.00 0.00 44.34 2.15
3385 3954 6.604396 ACAACATCATTTATCAGGAGCAATCA 59.396 34.615 0.00 0.00 0.00 2.57
3399 3968 8.604640 TGCATTAAACATTGACAACATCATTT 57.395 26.923 0.00 0.00 37.11 2.32
3427 3996 8.810990 TTAGGAAGACCTTTTAAAAACAGTCA 57.189 30.769 19.53 4.44 45.36 3.41
3443 4012 6.652900 GGATCTGCTCCATTAATTAGGAAGAC 59.347 42.308 0.00 0.00 44.26 3.01
3444 4013 6.773638 GGATCTGCTCCATTAATTAGGAAGA 58.226 40.000 0.00 0.00 44.26 2.87
3538 4107 0.540365 ATGGTGTGCAAGTTCCCCAG 60.540 55.000 0.00 0.00 0.00 4.45
3553 4122 6.126863 TCAACTCCATTCTTGAAGTATGGT 57.873 37.500 24.21 8.86 41.98 3.55
3618 4187 6.573664 TTCACATTTTGCTATTACTGCAGT 57.426 33.333 25.12 25.12 41.71 4.40
3623 4192 7.362920 GGTGGTCATTCACATTTTGCTATTACT 60.363 37.037 0.00 0.00 39.27 2.24
4040 4609 5.221126 GGAGTTGGATGTTGATAATTCAGGC 60.221 44.000 0.00 0.00 32.27 4.85
4047 4616 6.126863 AGTTCAGGAGTTGGATGTTGATAA 57.873 37.500 0.00 0.00 0.00 1.75
4154 4724 3.930229 TGTGCCAGTAATGTACTAAAGCG 59.070 43.478 0.00 0.00 37.23 4.68
4161 4731 5.817816 AGATTTAGCTGTGCCAGTAATGTAC 59.182 40.000 0.00 0.00 33.43 2.90
4168 4738 2.355513 CCAGAGATTTAGCTGTGCCAGT 60.356 50.000 0.00 0.00 33.43 4.00
4185 4755 0.906066 TAAACGCTATGGTGGCCAGA 59.094 50.000 5.11 0.00 36.75 3.86
4235 4805 1.028330 GCTTAGCAGCACATGGAGCA 61.028 55.000 13.81 0.00 46.49 4.26
4265 4835 3.594603 TGCAGTAGAGCTTGTAACTCC 57.405 47.619 0.00 0.00 34.56 3.85
4298 4868 3.681593 TCCGGTGATCGTAAGGAAAAA 57.318 42.857 0.00 0.00 37.11 1.94
4303 4873 2.667473 AACTTCCGGTGATCGTAAGG 57.333 50.000 0.00 0.00 38.82 2.69
4304 4874 4.599047 CTCTAACTTCCGGTGATCGTAAG 58.401 47.826 0.00 0.00 40.10 2.34
4346 4916 4.245660 GTCGGATCATCACTGAAACTGAA 58.754 43.478 0.00 0.00 34.37 3.02
4383 4953 0.598065 AAGCAAGCCAATTCGTGTCC 59.402 50.000 0.00 0.00 0.00 4.02
4591 5560 1.953772 AAAAACATCCGGCACCGAC 59.046 52.632 11.42 0.00 42.83 4.79
4592 5561 4.484987 AAAAACATCCGGCACCGA 57.515 50.000 11.42 0.00 42.83 4.69
4613 5582 2.096248 AGCACCGTGGAAGTTCAAAAA 58.904 42.857 5.01 0.00 0.00 1.94
4614 5583 1.403679 CAGCACCGTGGAAGTTCAAAA 59.596 47.619 5.01 0.00 0.00 2.44
4615 5584 1.021202 CAGCACCGTGGAAGTTCAAA 58.979 50.000 5.01 0.00 0.00 2.69
4616 5585 0.817634 CCAGCACCGTGGAAGTTCAA 60.818 55.000 5.01 0.00 40.44 2.69
4617 5586 1.227823 CCAGCACCGTGGAAGTTCA 60.228 57.895 5.01 0.00 40.44 3.18
4618 5587 1.070786 TCCAGCACCGTGGAAGTTC 59.929 57.895 0.00 0.00 44.01 3.01
4619 5588 3.236391 TCCAGCACCGTGGAAGTT 58.764 55.556 0.00 0.00 44.01 2.66
4624 5593 2.390599 CGAACATCCAGCACCGTGG 61.391 63.158 0.00 0.00 39.19 4.94
4625 5594 1.227999 AACGAACATCCAGCACCGTG 61.228 55.000 0.00 0.00 0.00 4.94
4626 5595 0.949105 GAACGAACATCCAGCACCGT 60.949 55.000 0.00 0.00 0.00 4.83
4627 5596 1.787847 GAACGAACATCCAGCACCG 59.212 57.895 0.00 0.00 0.00 4.94
4628 5597 1.787847 CGAACGAACATCCAGCACC 59.212 57.895 0.00 0.00 0.00 5.01
4629 5598 1.132640 GCGAACGAACATCCAGCAC 59.867 57.895 0.00 0.00 0.00 4.40
4630 5599 1.291184 CTGCGAACGAACATCCAGCA 61.291 55.000 0.00 0.00 0.00 4.41
4631 5600 1.421485 CTGCGAACGAACATCCAGC 59.579 57.895 0.00 0.00 0.00 4.85
4632 5601 1.361668 CCCTGCGAACGAACATCCAG 61.362 60.000 0.00 0.00 0.00 3.86
4702 5671 8.786826 ATCCATTTCTACAACAAGTAATTCGA 57.213 30.769 0.00 0.00 30.92 3.71
4757 5726 6.260714 TGTCACGGAATGGATAGAAATGAATG 59.739 38.462 0.00 0.00 0.00 2.67
4760 5729 5.351948 TGTCACGGAATGGATAGAAATGA 57.648 39.130 0.00 0.00 0.00 2.57
4762 5731 5.745227 ACTTGTCACGGAATGGATAGAAAT 58.255 37.500 0.00 0.00 0.00 2.17
4772 5741 4.457949 GTCCCAAATTACTTGTCACGGAAT 59.542 41.667 0.00 0.00 32.65 3.01
4776 5745 2.158841 CCGTCCCAAATTACTTGTCACG 59.841 50.000 0.00 0.00 37.66 4.35
4795 5764 2.240279 CCTAGGAAGATACTCCCACCG 58.760 57.143 1.05 0.00 35.95 4.94
4800 5769 2.531771 GGCTCCCTAGGAAGATACTCC 58.468 57.143 11.48 0.00 35.51 3.85
4827 5796 0.389817 GCCCCGAAAGTTGATTTGGC 60.390 55.000 0.00 0.00 32.28 4.52
4837 5806 2.472909 GGATGCTTCGCCCCGAAAG 61.473 63.158 1.59 0.00 45.23 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.