Multiple sequence alignment - TraesCS5A01G126500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G126500 chr5A 100.000 5571 0 0 509 6079 279559029 279564599 0.000000e+00 10288.0
1 TraesCS5A01G126500 chr5A 100.000 175 0 0 1 175 279558521 279558695 2.110000e-84 324.0
2 TraesCS5A01G126500 chr5A 93.684 95 4 2 2270 2363 279560744 279560837 2.280000e-29 141.0
3 TraesCS5A01G126500 chr5A 93.684 95 4 2 2224 2317 279560790 279560883 2.280000e-29 141.0
4 TraesCS5A01G126500 chr5B 92.403 2185 108 29 3080 5218 228760430 228762602 0.000000e+00 3062.0
5 TraesCS5A01G126500 chr5B 93.298 2074 111 16 870 2934 228756076 228758130 0.000000e+00 3035.0
6 TraesCS5A01G126500 chr5B 96.732 153 5 0 2931 3083 228758167 228758319 7.820000e-64 255.0
7 TraesCS5A01G126500 chr5B 89.286 140 9 1 723 862 228754679 228754812 2.910000e-38 171.0
8 TraesCS5A01G126500 chr5D 96.090 1381 37 8 3827 5194 214086680 214088056 0.000000e+00 2235.0
9 TraesCS5A01G126500 chr5D 91.535 1394 84 22 509 1882 214081573 214082952 0.000000e+00 1890.0
10 TraesCS5A01G126500 chr5D 95.882 850 30 3 2931 3779 214083989 214084834 0.000000e+00 1371.0
11 TraesCS5A01G126500 chr5D 93.775 739 41 5 5275 6008 443062027 443061289 0.000000e+00 1105.0
12 TraesCS5A01G126500 chr5D 94.003 667 30 3 2270 2934 214083253 214083911 0.000000e+00 1002.0
13 TraesCS5A01G126500 chr5D 93.548 403 21 5 1918 2318 214082949 214083348 4.060000e-166 595.0
14 TraesCS5A01G126500 chr5D 100.000 32 0 0 3777 3808 214084995 214085026 6.580000e-05 60.2
15 TraesCS5A01G126500 chr7A 94.528 731 39 1 5279 6008 183836776 183836046 0.000000e+00 1127.0
16 TraesCS5A01G126500 chr7A 96.429 84 3 0 5996 6079 326414046 326413963 8.220000e-29 139.0
17 TraesCS5A01G126500 chr7A 93.548 93 5 1 5988 6079 102872098 102872006 2.960000e-28 137.0
18 TraesCS5A01G126500 chr7A 93.548 93 5 1 5988 6079 102884426 102884334 2.960000e-28 137.0
19 TraesCS5A01G126500 chr7A 98.684 76 1 0 6004 6079 597799957 597799882 1.060000e-27 135.0
20 TraesCS5A01G126500 chr7A 95.161 62 3 0 5216 5277 688209948 688209887 1.390000e-16 99.0
21 TraesCS5A01G126500 chr2D 94.583 720 38 1 5279 5997 43291232 43290513 0.000000e+00 1112.0
22 TraesCS5A01G126500 chr2D 93.548 62 4 0 5216 5277 403503297 403503236 6.490000e-15 93.5
23 TraesCS5A01G126500 chr7D 93.733 734 44 2 5274 6005 610654806 610655539 0.000000e+00 1099.0
24 TraesCS5A01G126500 chr7D 96.774 62 2 0 5216 5277 595092751 595092690 3.000000e-18 104.0
25 TraesCS5A01G126500 chr3D 93.733 734 42 4 5279 6008 485199179 485198446 0.000000e+00 1098.0
26 TraesCS5A01G126500 chr3D 93.080 737 47 4 5273 6005 12113170 12113906 0.000000e+00 1075.0
27 TraesCS5A01G126500 chr6D 93.724 733 42 4 5279 6008 27988149 27987418 0.000000e+00 1096.0
28 TraesCS5A01G126500 chrUn 93.597 734 43 4 5275 6005 325812397 325813129 0.000000e+00 1092.0
29 TraesCS5A01G126500 chr1D 93.469 735 43 5 5275 6005 782945 783678 0.000000e+00 1086.0
30 TraesCS5A01G126500 chr2A 96.552 87 2 1 5994 6079 214780536 214780622 6.350000e-30 143.0
31 TraesCS5A01G126500 chr2A 93.478 92 3 3 5988 6079 493635621 493635533 3.820000e-27 134.0
32 TraesCS5A01G126500 chr4A 90.654 107 7 3 5976 6079 62097972 62098078 8.220000e-29 139.0
33 TraesCS5A01G126500 chr4A 95.455 88 2 2 5993 6079 188851918 188852004 8.220000e-29 139.0
34 TraesCS5A01G126500 chr1A 91.837 98 4 4 5983 6079 257761884 257761978 3.820000e-27 134.0
35 TraesCS5A01G126500 chr7B 95.161 62 3 0 5216 5277 598479211 598479150 1.390000e-16 99.0
36 TraesCS5A01G126500 chr7B 95.161 62 3 0 5216 5277 644555624 644555563 1.390000e-16 99.0
37 TraesCS5A01G126500 chr2B 93.333 60 4 0 5218 5277 735376468 735376409 8.390000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G126500 chr5A 279558521 279564599 6078 False 2723.50 10288 96.842000 1 6079 4 chr5A.!!$F1 6078
1 TraesCS5A01G126500 chr5B 228754679 228762602 7923 False 1630.75 3062 92.929750 723 5218 4 chr5B.!!$F1 4495
2 TraesCS5A01G126500 chr5D 214081573 214088056 6483 False 1192.20 2235 95.176333 509 5194 6 chr5D.!!$F1 4685
3 TraesCS5A01G126500 chr5D 443061289 443062027 738 True 1105.00 1105 93.775000 5275 6008 1 chr5D.!!$R1 733
4 TraesCS5A01G126500 chr7A 183836046 183836776 730 True 1127.00 1127 94.528000 5279 6008 1 chr7A.!!$R3 729
5 TraesCS5A01G126500 chr2D 43290513 43291232 719 True 1112.00 1112 94.583000 5279 5997 1 chr2D.!!$R1 718
6 TraesCS5A01G126500 chr7D 610654806 610655539 733 False 1099.00 1099 93.733000 5274 6005 1 chr7D.!!$F1 731
7 TraesCS5A01G126500 chr3D 485198446 485199179 733 True 1098.00 1098 93.733000 5279 6008 1 chr3D.!!$R1 729
8 TraesCS5A01G126500 chr3D 12113170 12113906 736 False 1075.00 1075 93.080000 5273 6005 1 chr3D.!!$F1 732
9 TraesCS5A01G126500 chr6D 27987418 27988149 731 True 1096.00 1096 93.724000 5279 6008 1 chr6D.!!$R1 729
10 TraesCS5A01G126500 chrUn 325812397 325813129 732 False 1092.00 1092 93.597000 5275 6005 1 chrUn.!!$F1 730
11 TraesCS5A01G126500 chr1D 782945 783678 733 False 1086.00 1086 93.469000 5275 6005 1 chr1D.!!$F1 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.034059 GATGTATGGCTAGCGGTGCT 59.966 55.0 9.00 0.0 43.41 4.40 F
151 152 0.034059 ATGTATGGCTAGCGGTGCTC 59.966 55.0 9.00 0.0 40.44 4.26 F
603 605 0.322187 AAATACCGCCACCAGTGACC 60.322 55.0 0.00 0.0 0.00 4.02 F
808 819 0.322456 CCAAACAGGCCATCGAGGAA 60.322 55.0 5.01 0.0 41.22 3.36 F
1177 2448 1.511318 ATCTCATCGCTCCGTCTCCG 61.511 60.0 0.00 0.0 0.00 4.63 F
2558 3883 1.944177 CTGGAGGGGTCTCTGAGAAA 58.056 55.0 9.31 0.0 39.86 2.52 F
3577 7097 0.330604 ATGGCTGCAGATGACCTTGT 59.669 50.0 20.43 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 2767 0.673644 CAAGCGGTAGGACAAGGGTG 60.674 60.000 0.00 0.0 0.00 4.61 R
1948 3226 4.348168 TGAAGGAAAAGACCTAGCAAGACT 59.652 41.667 0.00 0.0 39.62 3.24 R
2534 3859 0.690411 CAGAGACCCCTCCAGCATCT 60.690 60.000 0.00 0.0 40.30 2.90 R
2696 4021 3.941573 TCTGTCATGATGCAGCTACAAA 58.058 40.909 2.53 0.0 33.09 2.83 R
2825 4150 2.508526 CCAGGAGGAACAGTTTGAAGG 58.491 52.381 0.00 0.0 36.89 3.46 R
3738 7258 0.179084 AAGAGTGTGGACGTGTGGTG 60.179 55.000 0.00 0.0 0.00 4.17 R
5543 10893 0.032952 CGTGTCCGGAGAAACCTGAA 59.967 55.000 3.06 0.0 33.87 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.763249 GCGATCGCAGGAAAATTGAT 57.237 45.000 33.89 0.00 41.49 2.57
36 37 2.378806 GCGATCGCAGGAAAATTGATG 58.621 47.619 33.89 0.00 41.49 3.07
37 38 2.378806 CGATCGCAGGAAAATTGATGC 58.621 47.619 0.26 0.00 35.32 3.91
38 39 2.032550 CGATCGCAGGAAAATTGATGCT 59.967 45.455 0.26 0.00 36.52 3.79
39 40 3.488047 CGATCGCAGGAAAATTGATGCTT 60.488 43.478 0.26 0.00 36.52 3.91
40 41 3.492421 TCGCAGGAAAATTGATGCTTC 57.508 42.857 0.00 0.00 36.52 3.86
41 42 2.819019 TCGCAGGAAAATTGATGCTTCA 59.181 40.909 0.00 0.00 36.52 3.02
42 43 3.119743 TCGCAGGAAAATTGATGCTTCAG 60.120 43.478 2.23 0.00 36.52 3.02
43 44 3.119743 CGCAGGAAAATTGATGCTTCAGA 60.120 43.478 2.23 0.00 36.52 3.27
44 45 4.421948 GCAGGAAAATTGATGCTTCAGAG 58.578 43.478 2.23 0.00 35.78 3.35
45 46 4.157289 GCAGGAAAATTGATGCTTCAGAGA 59.843 41.667 2.23 0.00 35.78 3.10
46 47 5.676584 GCAGGAAAATTGATGCTTCAGAGAG 60.677 44.000 2.23 0.00 35.78 3.20
47 48 4.948621 AGGAAAATTGATGCTTCAGAGAGG 59.051 41.667 2.23 0.00 32.27 3.69
48 49 4.946157 GGAAAATTGATGCTTCAGAGAGGA 59.054 41.667 2.23 0.00 32.27 3.71
49 50 5.163673 GGAAAATTGATGCTTCAGAGAGGAC 60.164 44.000 2.23 0.00 32.27 3.85
50 51 4.564782 AATTGATGCTTCAGAGAGGACA 57.435 40.909 2.23 0.00 32.27 4.02
51 52 4.564782 ATTGATGCTTCAGAGAGGACAA 57.435 40.909 2.23 0.00 32.27 3.18
52 53 4.356405 TTGATGCTTCAGAGAGGACAAA 57.644 40.909 2.23 0.00 32.27 2.83
53 54 3.935315 TGATGCTTCAGAGAGGACAAAG 58.065 45.455 0.00 0.00 0.00 2.77
54 55 2.847327 TGCTTCAGAGAGGACAAAGG 57.153 50.000 0.00 0.00 0.00 3.11
55 56 1.349026 TGCTTCAGAGAGGACAAAGGG 59.651 52.381 0.00 0.00 0.00 3.95
56 57 1.948144 GCTTCAGAGAGGACAAAGGGC 60.948 57.143 0.00 0.00 0.00 5.19
57 58 1.349026 CTTCAGAGAGGACAAAGGGCA 59.651 52.381 0.00 0.00 0.00 5.36
58 59 1.661463 TCAGAGAGGACAAAGGGCAT 58.339 50.000 0.00 0.00 0.00 4.40
59 60 1.988107 TCAGAGAGGACAAAGGGCATT 59.012 47.619 0.00 0.00 0.00 3.56
60 61 3.181329 TCAGAGAGGACAAAGGGCATTA 58.819 45.455 0.00 0.00 0.00 1.90
61 62 3.055094 TCAGAGAGGACAAAGGGCATTAC 60.055 47.826 0.00 0.00 0.00 1.89
62 63 2.239907 AGAGAGGACAAAGGGCATTACC 59.760 50.000 0.00 0.00 37.93 2.85
63 64 1.065418 AGAGGACAAAGGGCATTACCG 60.065 52.381 0.00 0.00 40.62 4.02
64 65 0.696501 AGGACAAAGGGCATTACCGT 59.303 50.000 0.00 0.00 40.62 4.83
65 66 1.092348 GGACAAAGGGCATTACCGTC 58.908 55.000 0.00 0.00 40.62 4.79
66 67 1.612199 GGACAAAGGGCATTACCGTCA 60.612 52.381 10.01 0.00 40.62 4.35
67 68 2.365582 GACAAAGGGCATTACCGTCAT 58.634 47.619 4.72 0.00 40.62 3.06
68 69 2.752903 GACAAAGGGCATTACCGTCATT 59.247 45.455 4.72 0.00 40.62 2.57
69 70 2.491693 ACAAAGGGCATTACCGTCATTG 59.508 45.455 0.00 0.00 40.62 2.82
70 71 2.752354 CAAAGGGCATTACCGTCATTGA 59.248 45.455 0.00 0.00 40.62 2.57
71 72 2.038387 AGGGCATTACCGTCATTGAC 57.962 50.000 6.73 6.73 40.62 3.18
81 82 2.397751 GTCATTGACGCAGATGGGG 58.602 57.895 0.13 0.00 0.00 4.96
82 83 1.097547 GTCATTGACGCAGATGGGGG 61.098 60.000 0.13 0.00 0.00 5.40
96 97 2.520968 GGGGGTGAAGTTGGTGCT 59.479 61.111 0.00 0.00 0.00 4.40
97 98 1.603739 GGGGGTGAAGTTGGTGCTC 60.604 63.158 0.00 0.00 0.00 4.26
98 99 1.150536 GGGGTGAAGTTGGTGCTCA 59.849 57.895 0.00 0.00 0.00 4.26
99 100 1.172812 GGGGTGAAGTTGGTGCTCAC 61.173 60.000 0.00 0.00 0.00 3.51
122 123 1.153549 GGTGATCACCGTCCAGAGC 60.154 63.158 28.52 3.16 42.29 4.09
123 124 1.608717 GGTGATCACCGTCCAGAGCT 61.609 60.000 28.52 0.00 42.29 4.09
124 125 0.247736 GTGATCACCGTCCAGAGCTT 59.752 55.000 15.31 0.00 0.00 3.74
125 126 0.976641 TGATCACCGTCCAGAGCTTT 59.023 50.000 0.00 0.00 0.00 3.51
126 127 1.066858 TGATCACCGTCCAGAGCTTTC 60.067 52.381 0.00 0.00 0.00 2.62
127 128 0.250513 ATCACCGTCCAGAGCTTTCC 59.749 55.000 0.00 0.00 0.00 3.13
128 129 0.832135 TCACCGTCCAGAGCTTTCCT 60.832 55.000 0.00 0.00 0.00 3.36
129 130 0.390472 CACCGTCCAGAGCTTTCCTC 60.390 60.000 0.00 0.00 41.07 3.71
130 131 1.219393 CCGTCCAGAGCTTTCCTCC 59.781 63.158 0.00 0.00 41.74 4.30
131 132 1.153745 CGTCCAGAGCTTTCCTCCG 60.154 63.158 0.00 0.00 41.74 4.63
132 133 1.595993 CGTCCAGAGCTTTCCTCCGA 61.596 60.000 0.00 0.00 41.74 4.55
133 134 0.827368 GTCCAGAGCTTTCCTCCGAT 59.173 55.000 0.00 0.00 41.74 4.18
134 135 0.826715 TCCAGAGCTTTCCTCCGATG 59.173 55.000 0.00 0.00 41.74 3.84
135 136 0.539051 CCAGAGCTTTCCTCCGATGT 59.461 55.000 0.00 0.00 41.74 3.06
136 137 1.757118 CCAGAGCTTTCCTCCGATGTA 59.243 52.381 0.00 0.00 41.74 2.29
137 138 2.366916 CCAGAGCTTTCCTCCGATGTAT 59.633 50.000 0.00 0.00 41.74 2.29
138 139 3.388308 CAGAGCTTTCCTCCGATGTATG 58.612 50.000 0.00 0.00 41.74 2.39
139 140 2.366916 AGAGCTTTCCTCCGATGTATGG 59.633 50.000 0.00 0.00 41.74 2.74
140 141 1.202698 AGCTTTCCTCCGATGTATGGC 60.203 52.381 0.00 0.00 0.00 4.40
141 142 1.202698 GCTTTCCTCCGATGTATGGCT 60.203 52.381 0.00 0.00 0.00 4.75
142 143 2.037251 GCTTTCCTCCGATGTATGGCTA 59.963 50.000 0.00 0.00 0.00 3.93
143 144 3.862642 GCTTTCCTCCGATGTATGGCTAG 60.863 52.174 0.00 0.00 0.00 3.42
144 145 1.257743 TCCTCCGATGTATGGCTAGC 58.742 55.000 6.04 6.04 0.00 3.42
145 146 0.109086 CCTCCGATGTATGGCTAGCG 60.109 60.000 9.00 0.00 0.00 4.26
146 147 0.109086 CTCCGATGTATGGCTAGCGG 60.109 60.000 9.00 1.38 40.06 5.52
147 148 0.826256 TCCGATGTATGGCTAGCGGT 60.826 55.000 9.00 1.92 39.70 5.68
148 149 0.667487 CCGATGTATGGCTAGCGGTG 60.667 60.000 9.00 0.00 34.45 4.94
149 150 1.284982 CGATGTATGGCTAGCGGTGC 61.285 60.000 9.00 3.90 0.00 5.01
150 151 0.034059 GATGTATGGCTAGCGGTGCT 59.966 55.000 9.00 0.00 43.41 4.40
151 152 0.034059 ATGTATGGCTAGCGGTGCTC 59.966 55.000 9.00 0.00 40.44 4.26
152 153 1.661821 GTATGGCTAGCGGTGCTCG 60.662 63.158 9.00 0.00 40.44 5.03
163 164 3.558411 GTGCTCGCCGTGCAGATC 61.558 66.667 14.73 0.00 41.41 2.75
164 165 3.763356 TGCTCGCCGTGCAGATCT 61.763 61.111 10.08 0.00 35.31 2.75
165 166 2.510238 GCTCGCCGTGCAGATCTT 60.510 61.111 6.24 0.00 0.00 2.40
166 167 2.806856 GCTCGCCGTGCAGATCTTG 61.807 63.158 6.24 0.00 0.00 3.02
167 168 1.446792 CTCGCCGTGCAGATCTTGT 60.447 57.895 0.00 0.00 0.00 3.16
168 169 1.690283 CTCGCCGTGCAGATCTTGTG 61.690 60.000 0.00 0.00 0.00 3.33
169 170 2.743752 CGCCGTGCAGATCTTGTGG 61.744 63.158 0.00 0.00 0.00 4.17
170 171 3.044059 GCCGTGCAGATCTTGTGGC 62.044 63.158 8.73 8.73 35.58 5.01
171 172 2.401766 CCGTGCAGATCTTGTGGCC 61.402 63.158 0.00 0.00 0.00 5.36
172 173 2.743752 CGTGCAGATCTTGTGGCCG 61.744 63.158 0.00 0.00 0.00 6.13
173 174 2.747460 TGCAGATCTTGTGGCCGC 60.747 61.111 10.11 10.11 0.00 6.53
174 175 3.512516 GCAGATCTTGTGGCCGCC 61.513 66.667 15.15 1.04 0.00 6.13
541 542 0.745128 ACTTCGCAAACCAACACGGA 60.745 50.000 0.00 0.00 38.63 4.69
549 550 0.763223 AACCAACACGGAGTCTCCCT 60.763 55.000 13.54 0.00 41.61 4.20
574 575 2.790433 GTGCAAACTCCTTCACCCATA 58.210 47.619 0.00 0.00 0.00 2.74
583 585 8.802267 CAAACTCCTTCACCCATAATTTTTAGA 58.198 33.333 0.00 0.00 0.00 2.10
592 594 8.192110 TCACCCATAATTTTTAGAAAATACCGC 58.808 33.333 0.00 0.00 0.00 5.68
598 600 5.379732 TTTTTAGAAAATACCGCCACCAG 57.620 39.130 0.00 0.00 0.00 4.00
599 601 3.706600 TTAGAAAATACCGCCACCAGT 57.293 42.857 0.00 0.00 0.00 4.00
600 602 1.821216 AGAAAATACCGCCACCAGTG 58.179 50.000 0.00 0.00 0.00 3.66
602 604 1.467342 GAAAATACCGCCACCAGTGAC 59.533 52.381 0.00 0.00 0.00 3.67
603 605 0.322187 AAATACCGCCACCAGTGACC 60.322 55.000 0.00 0.00 0.00 4.02
605 607 0.324923 ATACCGCCACCAGTGACCTA 60.325 55.000 0.00 0.00 0.00 3.08
607 609 1.198759 ACCGCCACCAGTGACCTATT 61.199 55.000 0.00 0.00 0.00 1.73
611 613 2.755650 GCCACCAGTGACCTATTATCG 58.244 52.381 0.00 0.00 0.00 2.92
613 615 2.102420 CCACCAGTGACCTATTATCGCA 59.898 50.000 0.00 0.00 0.00 5.10
614 616 3.244215 CCACCAGTGACCTATTATCGCAT 60.244 47.826 0.00 0.00 0.00 4.73
616 618 3.244215 ACCAGTGACCTATTATCGCATGG 60.244 47.826 0.00 0.00 34.12 3.66
617 619 3.329386 CAGTGACCTATTATCGCATGGG 58.671 50.000 2.76 2.76 0.00 4.00
620 622 3.963428 GACCTATTATCGCATGGGTCT 57.037 47.619 9.86 1.54 46.49 3.85
621 623 3.589988 GACCTATTATCGCATGGGTCTG 58.410 50.000 9.86 0.00 46.49 3.51
622 624 3.239449 ACCTATTATCGCATGGGTCTGA 58.761 45.455 9.86 0.00 32.70 3.27
623 625 3.840666 ACCTATTATCGCATGGGTCTGAT 59.159 43.478 9.86 4.08 32.70 2.90
624 626 4.287067 ACCTATTATCGCATGGGTCTGATT 59.713 41.667 9.86 0.00 32.70 2.57
625 627 5.483937 ACCTATTATCGCATGGGTCTGATTA 59.516 40.000 9.86 0.00 32.70 1.75
626 628 6.156949 ACCTATTATCGCATGGGTCTGATTAT 59.843 38.462 9.86 0.00 32.70 1.28
627 629 6.481313 CCTATTATCGCATGGGTCTGATTATG 59.519 42.308 9.86 0.00 0.00 1.90
634 645 5.392919 CGCATGGGTCTGATTATGAAAAACA 60.393 40.000 0.68 0.00 0.00 2.83
635 646 6.397272 GCATGGGTCTGATTATGAAAAACAA 58.603 36.000 0.00 0.00 0.00 2.83
636 647 7.043565 GCATGGGTCTGATTATGAAAAACAAT 58.956 34.615 0.00 0.00 0.00 2.71
637 648 7.223387 GCATGGGTCTGATTATGAAAAACAATC 59.777 37.037 0.00 0.00 0.00 2.67
643 654 9.773328 GTCTGATTATGAAAAACAATCGATTCA 57.227 29.630 7.92 3.31 36.35 2.57
653 664 1.131126 CAATCGATTCAAGCGTGCCTT 59.869 47.619 7.92 0.00 0.00 4.35
658 669 2.604373 CGATTCAAGCGTGCCTTCAAAA 60.604 45.455 0.00 0.00 0.00 2.44
659 670 3.578688 GATTCAAGCGTGCCTTCAAAAT 58.421 40.909 0.00 0.00 0.00 1.82
660 671 2.420628 TCAAGCGTGCCTTCAAAATG 57.579 45.000 0.00 0.00 0.00 2.32
662 673 2.360483 TCAAGCGTGCCTTCAAAATGAA 59.640 40.909 0.00 0.00 34.79 2.57
666 677 2.403259 CGTGCCTTCAAAATGAAACCC 58.597 47.619 0.00 0.00 35.73 4.11
667 678 2.223923 CGTGCCTTCAAAATGAAACCCA 60.224 45.455 0.00 0.00 35.73 4.51
668 679 3.392882 GTGCCTTCAAAATGAAACCCAG 58.607 45.455 0.00 0.00 35.73 4.45
671 682 3.573967 GCCTTCAAAATGAAACCCAGAGA 59.426 43.478 0.00 0.00 35.73 3.10
673 684 5.418840 GCCTTCAAAATGAAACCCAGAGATA 59.581 40.000 0.00 0.00 35.73 1.98
677 688 8.477419 TTCAAAATGAAACCCAGAGATACTTT 57.523 30.769 0.00 0.00 32.71 2.66
695 706 5.493133 ACTTTAAAGAACGTGTCATGCAA 57.507 34.783 21.92 0.00 0.00 4.08
699 710 1.967319 AGAACGTGTCATGCAAACCT 58.033 45.000 0.00 0.00 0.00 3.50
702 713 3.880490 AGAACGTGTCATGCAAACCTAAA 59.120 39.130 0.00 0.00 0.00 1.85
710 721 9.347934 CGTGTCATGCAAACCTAAAAATATTTA 57.652 29.630 0.01 0.00 0.00 1.40
712 723 9.646427 TGTCATGCAAACCTAAAAATATTTACC 57.354 29.630 0.01 0.00 0.00 2.85
716 727 7.091443 TGCAAACCTAAAAATATTTACCCACG 58.909 34.615 0.01 0.00 0.00 4.94
760 771 3.071874 ACCTCTGAAAATCGCATCCAA 57.928 42.857 0.00 0.00 0.00 3.53
762 773 2.223112 CCTCTGAAAATCGCATCCAACG 60.223 50.000 0.00 0.00 0.00 4.10
763 774 2.672874 CTCTGAAAATCGCATCCAACGA 59.327 45.455 0.00 0.00 44.75 3.85
774 785 3.002791 GCATCCAACGAGACTGATTGAA 58.997 45.455 0.00 0.00 0.00 2.69
808 819 0.322456 CCAAACAGGCCATCGAGGAA 60.322 55.000 5.01 0.00 41.22 3.36
809 820 1.683011 CCAAACAGGCCATCGAGGAAT 60.683 52.381 5.01 0.00 41.22 3.01
810 821 2.094675 CAAACAGGCCATCGAGGAATT 58.905 47.619 5.01 0.00 41.22 2.17
811 822 3.278574 CAAACAGGCCATCGAGGAATTA 58.721 45.455 5.01 0.00 41.22 1.40
812 823 2.622064 ACAGGCCATCGAGGAATTAC 57.378 50.000 5.01 0.00 41.22 1.89
813 824 2.119495 ACAGGCCATCGAGGAATTACT 58.881 47.619 5.01 0.00 41.22 2.24
815 826 3.069729 ACAGGCCATCGAGGAATTACTAC 59.930 47.826 5.01 0.00 41.22 2.73
819 830 4.082136 GGCCATCGAGGAATTACTACTAGG 60.082 50.000 0.00 0.00 41.22 3.02
956 2227 3.030652 CTGGTTGTGGTGTTCGCC 58.969 61.111 0.00 0.00 0.00 5.54
1068 2339 1.739562 CCTCTGCCAGCTTCGTCAC 60.740 63.158 0.00 0.00 0.00 3.67
1177 2448 1.511318 ATCTCATCGCTCCGTCTCCG 61.511 60.000 0.00 0.00 0.00 4.63
1183 2454 2.574399 GCTCCGTCTCCGCTTTCT 59.426 61.111 0.00 0.00 0.00 2.52
1711 2986 4.992381 AGTTGCTATCTTGTCGTTGTTC 57.008 40.909 0.00 0.00 0.00 3.18
1748 3023 7.377766 TGAAACTGATTGCTATTGGTACTTC 57.622 36.000 0.00 0.00 0.00 3.01
1796 3072 7.657354 GGATACATATGCACACTACTTCAATCA 59.343 37.037 1.58 0.00 0.00 2.57
1948 3226 3.139957 TCCAATGCTAGGGAATGCCATAA 59.860 43.478 0.00 0.00 35.15 1.90
1955 3233 2.659428 AGGGAATGCCATAAGTCTTGC 58.341 47.619 0.00 0.00 35.15 4.01
1961 3239 3.543680 TGCCATAAGTCTTGCTAGGTC 57.456 47.619 0.00 0.00 0.00 3.85
1970 3249 4.900684 AGTCTTGCTAGGTCTTTTCCTTC 58.099 43.478 0.00 0.00 38.86 3.46
1974 3253 3.347216 TGCTAGGTCTTTTCCTTCATGC 58.653 45.455 0.00 0.00 38.86 4.06
2166 3445 6.849085 TGGTATGTCAGTTGCCAATATTTT 57.151 33.333 0.00 0.00 0.00 1.82
2169 3448 7.147983 TGGTATGTCAGTTGCCAATATTTTACC 60.148 37.037 0.00 0.00 0.00 2.85
2264 3544 9.699703 GTCCTTAGATATTTGTATTCAGGACTC 57.300 37.037 7.18 0.00 38.22 3.36
2274 3554 8.617290 TTTGTATTCAGGACTCTAGGTTTTTC 57.383 34.615 0.00 0.00 0.00 2.29
2275 3555 7.311092 TGTATTCAGGACTCTAGGTTTTTCA 57.689 36.000 0.00 0.00 0.00 2.69
2276 3556 7.386851 TGTATTCAGGACTCTAGGTTTTTCAG 58.613 38.462 0.00 0.00 0.00 3.02
2277 3557 6.688073 ATTCAGGACTCTAGGTTTTTCAGA 57.312 37.500 0.00 0.00 0.00 3.27
2278 3558 5.730296 TCAGGACTCTAGGTTTTTCAGAG 57.270 43.478 0.00 0.00 41.32 3.35
2280 3560 6.312529 TCAGGACTCTAGGTTTTTCAGAGTA 58.687 40.000 3.60 0.00 46.89 2.59
2281 3561 6.954684 TCAGGACTCTAGGTTTTTCAGAGTAT 59.045 38.462 3.60 0.00 46.89 2.12
2282 3562 7.122948 TCAGGACTCTAGGTTTTTCAGAGTATC 59.877 40.741 3.60 0.92 46.89 2.24
2315 3595 9.440761 AGATATTTGTATTCAGGACTCTAGGTT 57.559 33.333 0.00 0.00 0.00 3.50
2371 3695 2.544267 GGACTGAAGGTTTCACTTGACG 59.456 50.000 0.00 0.00 35.46 4.35
2422 3747 2.286872 CATTGTCAGGTCTGATCTGGC 58.713 52.381 15.44 15.44 42.18 4.85
2476 3801 6.645790 ATTTGCAGATAATAAGGAAGCCAG 57.354 37.500 0.00 0.00 0.00 4.85
2534 3859 4.059511 TCAACTCTGCGGTATTTTCGAAA 58.940 39.130 6.47 6.47 0.00 3.46
2542 3867 3.788797 GCGGTATTTTCGAAAGATGCTGG 60.789 47.826 10.98 8.65 41.60 4.85
2558 3883 1.944177 CTGGAGGGGTCTCTGAGAAA 58.056 55.000 9.31 0.00 39.86 2.52
2735 4060 6.341316 TGACAGAAGTGTGCTCCTATTTATC 58.659 40.000 0.00 0.00 36.88 1.75
2745 4070 6.159988 GTGCTCCTATTTATCGCACTAGAAT 58.840 40.000 0.00 0.00 45.39 2.40
2746 4071 7.313646 GTGCTCCTATTTATCGCACTAGAATA 58.686 38.462 0.00 0.00 45.39 1.75
2747 4072 7.813148 GTGCTCCTATTTATCGCACTAGAATAA 59.187 37.037 0.00 0.00 45.39 1.40
2748 4073 8.531982 TGCTCCTATTTATCGCACTAGAATAAT 58.468 33.333 0.00 0.00 0.00 1.28
2749 4074 9.372369 GCTCCTATTTATCGCACTAGAATAATT 57.628 33.333 0.00 0.00 0.00 1.40
2888 4213 1.656441 CCACTCAACAGGCAAGTGC 59.344 57.895 0.00 0.00 39.23 4.40
2937 4343 3.529533 CTCTGGAGCACCAAAGTATCTG 58.470 50.000 3.90 0.00 46.32 2.90
2972 4378 5.751243 AAAAAGCAAGACACGTAGTTGAT 57.249 34.783 7.66 0.00 41.61 2.57
3083 6603 7.767261 ATCTTGAGATACTACTGTTGTCAGTC 58.233 38.462 4.11 0.00 42.19 3.51
3132 6652 8.196771 CAGCTCTCTATCTTTCTCAAATACACT 58.803 37.037 0.00 0.00 0.00 3.55
3133 6653 9.415008 AGCTCTCTATCTTTCTCAAATACACTA 57.585 33.333 0.00 0.00 0.00 2.74
3164 6684 3.379057 TGATCATACTTGAGCGGACGTAA 59.621 43.478 0.00 0.00 41.23 3.18
3223 6743 7.455008 AGGGTAAGTCTGAATCTGAAACTTCTA 59.545 37.037 0.00 0.00 32.71 2.10
3459 6979 2.906691 ACCAGCATATCAGACAGAGC 57.093 50.000 0.00 0.00 0.00 4.09
3577 7097 0.330604 ATGGCTGCAGATGACCTTGT 59.669 50.000 20.43 0.00 0.00 3.16
3627 7147 3.110705 AGATTGACCTGTCAGCCTGTAT 58.889 45.455 0.00 0.00 41.13 2.29
3688 7208 6.893958 ATCTCTGTGTATTCGTGTTCATTC 57.106 37.500 0.00 0.00 0.00 2.67
3731 7251 4.170647 ACATCATTCTTATCCCACCCCATT 59.829 41.667 0.00 0.00 0.00 3.16
3732 7252 5.375354 ACATCATTCTTATCCCACCCCATTA 59.625 40.000 0.00 0.00 0.00 1.90
3733 7253 5.582950 TCATTCTTATCCCACCCCATTAG 57.417 43.478 0.00 0.00 0.00 1.73
3734 7254 4.981647 TCATTCTTATCCCACCCCATTAGT 59.018 41.667 0.00 0.00 0.00 2.24
3735 7255 5.435041 TCATTCTTATCCCACCCCATTAGTT 59.565 40.000 0.00 0.00 0.00 2.24
3737 7257 5.806955 TCTTATCCCACCCCATTAGTTTT 57.193 39.130 0.00 0.00 0.00 2.43
3738 7258 5.762279 TCTTATCCCACCCCATTAGTTTTC 58.238 41.667 0.00 0.00 0.00 2.29
3989 9316 8.834465 CCTCTACTTCATTATCCAGAAAACATG 58.166 37.037 0.00 0.00 0.00 3.21
4082 9409 4.568760 GTGCAAGAGTGGAAGCTTCTATAC 59.431 45.833 25.05 19.86 0.00 1.47
4205 9541 4.101430 AGAAGGGCAAAAGAGCATTTTTCA 59.899 37.500 0.00 0.00 35.83 2.69
4557 9897 1.270147 GCGTCCATATTTCGCCCTACT 60.270 52.381 0.00 0.00 43.41 2.57
4651 9991 1.067060 GTCCCAAGTTTGAAGTGGTGC 59.933 52.381 0.00 0.00 0.00 5.01
4725 10065 4.202609 ACCTCTGAGAACATTCCAAATGGT 60.203 41.667 6.17 0.00 36.34 3.55
4890 10230 2.224305 GGGGATACAAGTGAAGGGATCG 60.224 54.545 0.00 0.00 39.74 3.69
5105 10452 5.635700 CGCTACTCTTGAGTTTTAGCTCTTT 59.364 40.000 16.88 0.00 36.51 2.52
5182 10530 5.309543 TGGTTTATACTGTATGGATCCAGGG 59.690 44.000 21.33 11.82 32.90 4.45
5194 10542 2.355818 GGATCCAGGGCGTACTTTTCTT 60.356 50.000 6.95 0.00 0.00 2.52
5197 10545 1.271163 CCAGGGCGTACTTTTCTTCCA 60.271 52.381 0.00 0.00 0.00 3.53
5218 10566 2.096248 AGTTCGAGAGCAGGGAGTAAG 58.904 52.381 0.00 0.00 0.00 2.34
5219 10567 1.135333 GTTCGAGAGCAGGGAGTAAGG 59.865 57.143 0.00 0.00 0.00 2.69
5220 10568 0.624254 TCGAGAGCAGGGAGTAAGGA 59.376 55.000 0.00 0.00 0.00 3.36
5221 10569 1.028905 CGAGAGCAGGGAGTAAGGAG 58.971 60.000 0.00 0.00 0.00 3.69
5222 10570 0.750249 GAGAGCAGGGAGTAAGGAGC 59.250 60.000 0.00 0.00 0.00 4.70
5223 10571 0.338120 AGAGCAGGGAGTAAGGAGCT 59.662 55.000 0.00 0.00 34.61 4.09
5224 10572 0.463620 GAGCAGGGAGTAAGGAGCTG 59.536 60.000 0.00 0.00 31.61 4.24
5225 10573 0.252467 AGCAGGGAGTAAGGAGCTGT 60.252 55.000 0.00 0.00 0.00 4.40
5226 10574 0.615850 GCAGGGAGTAAGGAGCTGTT 59.384 55.000 0.00 0.00 0.00 3.16
5227 10575 1.406205 GCAGGGAGTAAGGAGCTGTTC 60.406 57.143 0.00 0.00 0.00 3.18
5228 10576 2.183679 CAGGGAGTAAGGAGCTGTTCT 58.816 52.381 0.00 0.00 0.00 3.01
5229 10577 2.093764 CAGGGAGTAAGGAGCTGTTCTG 60.094 54.545 0.00 0.00 0.00 3.02
5230 10578 1.208293 GGGAGTAAGGAGCTGTTCTGG 59.792 57.143 0.00 0.00 0.00 3.86
5231 10579 2.180276 GGAGTAAGGAGCTGTTCTGGA 58.820 52.381 0.00 0.00 0.00 3.86
5232 10580 2.567615 GGAGTAAGGAGCTGTTCTGGAA 59.432 50.000 0.00 0.00 0.00 3.53
5233 10581 3.008049 GGAGTAAGGAGCTGTTCTGGAAA 59.992 47.826 0.00 0.00 0.00 3.13
5234 10582 3.997681 GAGTAAGGAGCTGTTCTGGAAAC 59.002 47.826 0.00 0.00 0.00 2.78
5235 10583 2.278332 AAGGAGCTGTTCTGGAAACC 57.722 50.000 0.00 0.00 0.00 3.27
5236 10584 1.140312 AGGAGCTGTTCTGGAAACCA 58.860 50.000 0.00 0.00 0.00 3.67
5237 10585 1.202818 AGGAGCTGTTCTGGAAACCAC 60.203 52.381 0.00 0.00 0.00 4.16
5238 10586 1.239347 GAGCTGTTCTGGAAACCACC 58.761 55.000 0.00 0.00 0.00 4.61
5239 10587 0.550914 AGCTGTTCTGGAAACCACCA 59.449 50.000 0.00 0.00 38.33 4.17
5245 10593 2.429930 TGGAAACCACCAGCTCCG 59.570 61.111 0.00 0.00 34.77 4.63
5246 10594 3.056328 GGAAACCACCAGCTCCGC 61.056 66.667 0.00 0.00 0.00 5.54
5247 10595 3.056328 GAAACCACCAGCTCCGCC 61.056 66.667 0.00 0.00 0.00 6.13
5248 10596 3.842925 GAAACCACCAGCTCCGCCA 62.843 63.158 0.00 0.00 0.00 5.69
5249 10597 3.429372 AAACCACCAGCTCCGCCAA 62.429 57.895 0.00 0.00 0.00 4.52
5250 10598 2.920076 AAACCACCAGCTCCGCCAAA 62.920 55.000 0.00 0.00 0.00 3.28
5251 10599 2.361610 CCACCAGCTCCGCCAAAT 60.362 61.111 0.00 0.00 0.00 2.32
5252 10600 2.409870 CCACCAGCTCCGCCAAATC 61.410 63.158 0.00 0.00 0.00 2.17
5253 10601 2.044946 ACCAGCTCCGCCAAATCC 60.045 61.111 0.00 0.00 0.00 3.01
5254 10602 2.045045 CCAGCTCCGCCAAATCCA 60.045 61.111 0.00 0.00 0.00 3.41
5255 10603 1.678635 CCAGCTCCGCCAAATCCAA 60.679 57.895 0.00 0.00 0.00 3.53
5256 10604 1.660560 CCAGCTCCGCCAAATCCAAG 61.661 60.000 0.00 0.00 0.00 3.61
5257 10605 1.379044 AGCTCCGCCAAATCCAAGG 60.379 57.895 0.00 0.00 0.00 3.61
5258 10606 1.378514 GCTCCGCCAAATCCAAGGA 60.379 57.895 0.00 0.00 0.00 3.36
5259 10607 0.753111 GCTCCGCCAAATCCAAGGAT 60.753 55.000 0.00 0.00 36.23 3.24
5260 10608 1.312815 CTCCGCCAAATCCAAGGATC 58.687 55.000 1.37 0.00 33.08 3.36
5261 10609 0.106719 TCCGCCAAATCCAAGGATCC 60.107 55.000 2.48 2.48 33.08 3.36
5262 10610 1.447317 CCGCCAAATCCAAGGATCCG 61.447 60.000 5.98 3.77 33.08 4.18
5263 10611 1.735973 GCCAAATCCAAGGATCCGC 59.264 57.895 5.98 0.00 33.08 5.54
5264 10612 2.024918 CCAAATCCAAGGATCCGCG 58.975 57.895 5.98 0.00 33.08 6.46
5265 10613 1.447317 CCAAATCCAAGGATCCGCGG 61.447 60.000 22.12 22.12 33.08 6.46
5266 10614 0.463654 CAAATCCAAGGATCCGCGGA 60.464 55.000 33.12 33.12 33.08 5.54
5267 10615 0.179045 AAATCCAAGGATCCGCGGAG 60.179 55.000 33.87 18.95 33.08 4.63
5268 10616 1.338136 AATCCAAGGATCCGCGGAGT 61.338 55.000 33.87 20.92 33.08 3.85
5269 10617 0.469331 ATCCAAGGATCCGCGGAGTA 60.469 55.000 33.87 11.36 0.00 2.59
5270 10618 1.067582 CCAAGGATCCGCGGAGTAC 59.932 63.158 33.87 24.05 0.00 2.73
5271 10619 1.067582 CAAGGATCCGCGGAGTACC 59.932 63.158 33.87 31.08 0.00 3.34
5277 10625 1.406539 GATCCGCGGAGTACCTGTTTA 59.593 52.381 33.87 5.48 0.00 2.01
5331 10681 2.552315 CAAAGCAACCAACACCGAGTAT 59.448 45.455 0.00 0.00 0.00 2.12
5344 10694 5.059161 ACACCGAGTATAGATAACGCTGTA 58.941 41.667 0.00 0.00 0.00 2.74
5422 10772 0.813184 CTTGGCAAAGCGTGGATGAT 59.187 50.000 0.00 0.00 0.00 2.45
5470 10820 1.696097 AACACCACAGACCGAGGCTT 61.696 55.000 0.00 0.00 0.00 4.35
5485 10835 2.050351 CTTCGATCCGCCGCGTAT 60.050 61.111 12.58 0.02 0.00 3.06
5492 10842 2.916502 ATCCGCCGCGTATCAAGCAA 62.917 55.000 12.58 0.00 34.19 3.91
5518 10868 3.682292 AAGAAGGGATGCGACGCCC 62.682 63.158 18.69 12.10 45.04 6.13
5542 10892 4.379243 CTGCTGCCCGGACGAGTT 62.379 66.667 0.73 0.00 0.00 3.01
5543 10893 3.883744 CTGCTGCCCGGACGAGTTT 62.884 63.158 0.73 0.00 0.00 2.66
5553 10903 2.480845 CGGACGAGTTTTCAGGTTTCT 58.519 47.619 0.00 0.00 0.00 2.52
5558 10908 2.547218 CGAGTTTTCAGGTTTCTCCGGA 60.547 50.000 2.93 2.93 41.99 5.14
5619 10970 2.616458 GGGAGGAATGGTGGCACCT 61.616 63.158 34.69 18.24 39.58 4.00
5636 10987 4.539083 TGCAGGTGTCACCGCGTT 62.539 61.111 24.15 5.26 44.90 4.84
5729 11082 2.438254 GTCGCCCATCACCATGCA 60.438 61.111 0.00 0.00 0.00 3.96
5775 11128 1.800315 CGCCTCACTACGAACACCG 60.800 63.158 0.00 0.00 45.44 4.94
6009 11362 4.323477 AGCAGGCCGGCGTTGTAA 62.323 61.111 21.08 0.00 39.27 2.41
6010 11363 3.799755 GCAGGCCGGCGTTGTAAG 61.800 66.667 21.08 9.10 0.00 2.34
6011 11364 2.358247 CAGGCCGGCGTTGTAAGT 60.358 61.111 21.08 0.00 0.00 2.24
6012 11365 2.358247 AGGCCGGCGTTGTAAGTG 60.358 61.111 22.54 0.00 0.00 3.16
6013 11366 4.097863 GGCCGGCGTTGTAAGTGC 62.098 66.667 22.54 0.00 0.00 4.40
6014 11367 3.350612 GCCGGCGTTGTAAGTGCA 61.351 61.111 12.58 0.00 0.00 4.57
6015 11368 2.686816 GCCGGCGTTGTAAGTGCAT 61.687 57.895 12.58 0.00 0.00 3.96
6016 11369 1.423845 CCGGCGTTGTAAGTGCATC 59.576 57.895 6.01 0.00 0.00 3.91
6017 11370 1.019278 CCGGCGTTGTAAGTGCATCT 61.019 55.000 6.01 0.00 0.00 2.90
6018 11371 1.635844 CGGCGTTGTAAGTGCATCTA 58.364 50.000 0.00 0.00 0.00 1.98
6019 11372 1.588404 CGGCGTTGTAAGTGCATCTAG 59.412 52.381 0.00 0.00 0.00 2.43
6020 11373 2.618053 GGCGTTGTAAGTGCATCTAGT 58.382 47.619 0.00 0.00 0.00 2.57
6021 11374 2.348666 GGCGTTGTAAGTGCATCTAGTG 59.651 50.000 0.00 0.00 0.00 2.74
6032 11385 1.794714 CATCTAGTGCCACCCCTAGT 58.205 55.000 0.00 0.00 33.81 2.57
6033 11386 2.119495 CATCTAGTGCCACCCCTAGTT 58.881 52.381 0.00 0.00 33.81 2.24
6034 11387 1.568504 TCTAGTGCCACCCCTAGTTG 58.431 55.000 0.00 0.00 33.81 3.16
6035 11388 0.541863 CTAGTGCCACCCCTAGTTGG 59.458 60.000 0.00 0.00 0.00 3.77
6036 11389 0.178885 TAGTGCCACCCCTAGTTGGT 60.179 55.000 0.00 0.53 36.21 3.67
6037 11390 1.065997 AGTGCCACCCCTAGTTGGTT 61.066 55.000 0.00 0.00 32.46 3.67
6038 11391 0.178973 GTGCCACCCCTAGTTGGTTT 60.179 55.000 0.00 0.00 32.46 3.27
6039 11392 0.558712 TGCCACCCCTAGTTGGTTTT 59.441 50.000 0.00 0.00 32.46 2.43
6040 11393 0.966179 GCCACCCCTAGTTGGTTTTG 59.034 55.000 0.00 0.00 32.46 2.44
6041 11394 1.627864 CCACCCCTAGTTGGTTTTGG 58.372 55.000 0.00 0.00 32.46 3.28
6042 11395 1.146152 CCACCCCTAGTTGGTTTTGGA 59.854 52.381 0.00 0.00 32.46 3.53
6043 11396 2.514803 CACCCCTAGTTGGTTTTGGAG 58.485 52.381 0.00 0.00 32.46 3.86
6044 11397 2.141067 ACCCCTAGTTGGTTTTGGAGT 58.859 47.619 0.00 0.00 29.75 3.85
6045 11398 3.073356 CACCCCTAGTTGGTTTTGGAGTA 59.927 47.826 0.00 0.00 32.46 2.59
6046 11399 3.920841 ACCCCTAGTTGGTTTTGGAGTAT 59.079 43.478 0.00 0.00 29.75 2.12
6047 11400 4.355889 ACCCCTAGTTGGTTTTGGAGTATT 59.644 41.667 0.00 0.00 29.75 1.89
6048 11401 4.705023 CCCCTAGTTGGTTTTGGAGTATTG 59.295 45.833 0.00 0.00 0.00 1.90
6049 11402 5.515886 CCCCTAGTTGGTTTTGGAGTATTGA 60.516 44.000 0.00 0.00 0.00 2.57
6050 11403 5.414765 CCCTAGTTGGTTTTGGAGTATTGAC 59.585 44.000 0.00 0.00 0.00 3.18
6051 11404 5.121768 CCTAGTTGGTTTTGGAGTATTGACG 59.878 44.000 0.00 0.00 0.00 4.35
6052 11405 4.710324 AGTTGGTTTTGGAGTATTGACGA 58.290 39.130 0.00 0.00 0.00 4.20
6053 11406 4.514066 AGTTGGTTTTGGAGTATTGACGAC 59.486 41.667 0.00 0.00 0.00 4.34
6054 11407 4.074627 TGGTTTTGGAGTATTGACGACA 57.925 40.909 0.00 0.00 0.00 4.35
6055 11408 4.452825 TGGTTTTGGAGTATTGACGACAA 58.547 39.130 2.18 2.18 40.42 3.18
6056 11409 4.882427 TGGTTTTGGAGTATTGACGACAAA 59.118 37.500 4.09 0.00 39.54 2.83
6057 11410 5.209977 GGTTTTGGAGTATTGACGACAAAC 58.790 41.667 4.09 4.89 39.54 2.93
6058 11411 5.209977 GTTTTGGAGTATTGACGACAAACC 58.790 41.667 4.09 6.92 39.54 3.27
6059 11412 4.345859 TTGGAGTATTGACGACAAACCT 57.654 40.909 4.09 3.43 39.54 3.50
6060 11413 5.471556 TTGGAGTATTGACGACAAACCTA 57.528 39.130 4.09 1.50 39.54 3.08
6061 11414 5.471556 TGGAGTATTGACGACAAACCTAA 57.528 39.130 4.09 0.00 39.54 2.69
6062 11415 6.045072 TGGAGTATTGACGACAAACCTAAT 57.955 37.500 4.09 0.00 39.54 1.73
6063 11416 6.469410 TGGAGTATTGACGACAAACCTAATT 58.531 36.000 4.09 0.00 39.54 1.40
6064 11417 6.370442 TGGAGTATTGACGACAAACCTAATTG 59.630 38.462 4.09 0.00 39.54 2.32
6065 11418 6.592607 GGAGTATTGACGACAAACCTAATTGA 59.407 38.462 4.09 0.00 39.54 2.57
6066 11419 7.201530 GGAGTATTGACGACAAACCTAATTGAG 60.202 40.741 4.09 0.00 39.54 3.02
6067 11420 5.880054 ATTGACGACAAACCTAATTGAGG 57.120 39.130 4.09 0.00 43.49 3.86
6068 11421 4.700213 ATTGACGACAAACCTAATTGAGGG 59.300 41.667 4.09 0.64 42.78 4.30
6069 11422 5.514136 ATTGACGACAAACCTAATTGAGGGA 60.514 40.000 4.09 0.00 42.78 4.20
6070 11423 7.516694 ATTGACGACAAACCTAATTGAGGGAC 61.517 42.308 4.09 0.00 42.78 4.46
6071 11424 9.587713 ATTGACGACAAACCTAATTGAGGGACT 62.588 40.741 4.09 0.00 42.78 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.378806 CATCAATTTTCCTGCGATCGC 58.621 47.619 32.48 32.48 42.35 4.58
17 18 2.032550 AGCATCAATTTTCCTGCGATCG 59.967 45.455 11.69 11.69 39.57 3.69
18 19 3.705043 AGCATCAATTTTCCTGCGATC 57.295 42.857 0.00 0.00 39.57 3.69
19 20 3.444742 TGAAGCATCAATTTTCCTGCGAT 59.555 39.130 0.00 0.00 39.57 4.58
20 21 2.819019 TGAAGCATCAATTTTCCTGCGA 59.181 40.909 0.00 0.00 39.57 5.10
21 22 3.119743 TCTGAAGCATCAATTTTCCTGCG 60.120 43.478 0.00 0.00 39.57 5.18
22 23 4.157289 TCTCTGAAGCATCAATTTTCCTGC 59.843 41.667 0.00 0.00 34.49 4.85
23 24 5.163642 CCTCTCTGAAGCATCAATTTTCCTG 60.164 44.000 0.00 0.00 34.49 3.86
24 25 4.948621 CCTCTCTGAAGCATCAATTTTCCT 59.051 41.667 0.00 0.00 34.49 3.36
25 26 4.946157 TCCTCTCTGAAGCATCAATTTTCC 59.054 41.667 0.00 0.00 34.49 3.13
26 27 5.413833 TGTCCTCTCTGAAGCATCAATTTTC 59.586 40.000 0.00 0.00 34.49 2.29
27 28 5.319453 TGTCCTCTCTGAAGCATCAATTTT 58.681 37.500 0.00 0.00 34.49 1.82
28 29 4.914983 TGTCCTCTCTGAAGCATCAATTT 58.085 39.130 0.00 0.00 34.49 1.82
29 30 4.564782 TGTCCTCTCTGAAGCATCAATT 57.435 40.909 0.00 0.00 34.49 2.32
30 31 4.564782 TTGTCCTCTCTGAAGCATCAAT 57.435 40.909 0.00 0.00 34.49 2.57
31 32 4.321718 CTTTGTCCTCTCTGAAGCATCAA 58.678 43.478 0.00 0.00 34.49 2.57
32 33 3.307269 CCTTTGTCCTCTCTGAAGCATCA 60.307 47.826 0.00 0.00 0.00 3.07
33 34 3.269178 CCTTTGTCCTCTCTGAAGCATC 58.731 50.000 0.00 0.00 0.00 3.91
34 35 2.026449 CCCTTTGTCCTCTCTGAAGCAT 60.026 50.000 0.00 0.00 0.00 3.79
35 36 1.349026 CCCTTTGTCCTCTCTGAAGCA 59.651 52.381 0.00 0.00 0.00 3.91
36 37 1.948144 GCCCTTTGTCCTCTCTGAAGC 60.948 57.143 0.00 0.00 0.00 3.86
37 38 1.349026 TGCCCTTTGTCCTCTCTGAAG 59.651 52.381 0.00 0.00 0.00 3.02
38 39 1.434188 TGCCCTTTGTCCTCTCTGAA 58.566 50.000 0.00 0.00 0.00 3.02
39 40 1.661463 ATGCCCTTTGTCCTCTCTGA 58.339 50.000 0.00 0.00 0.00 3.27
40 41 2.503895 AATGCCCTTTGTCCTCTCTG 57.496 50.000 0.00 0.00 0.00 3.35
41 42 2.239907 GGTAATGCCCTTTGTCCTCTCT 59.760 50.000 0.00 0.00 0.00 3.10
42 43 2.644676 GGTAATGCCCTTTGTCCTCTC 58.355 52.381 0.00 0.00 0.00 3.20
43 44 1.065418 CGGTAATGCCCTTTGTCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
44 45 1.339727 ACGGTAATGCCCTTTGTCCTC 60.340 52.381 0.00 0.00 0.00 3.71
45 46 0.696501 ACGGTAATGCCCTTTGTCCT 59.303 50.000 0.00 0.00 0.00 3.85
46 47 1.092348 GACGGTAATGCCCTTTGTCC 58.908 55.000 0.00 0.00 0.00 4.02
47 48 1.816074 TGACGGTAATGCCCTTTGTC 58.184 50.000 0.00 0.00 0.00 3.18
48 49 2.491693 CAATGACGGTAATGCCCTTTGT 59.508 45.455 0.00 0.00 0.00 2.83
49 50 2.752354 TCAATGACGGTAATGCCCTTTG 59.248 45.455 0.00 0.00 0.00 2.77
50 51 2.752903 GTCAATGACGGTAATGCCCTTT 59.247 45.455 0.00 0.00 0.00 3.11
51 52 2.365582 GTCAATGACGGTAATGCCCTT 58.634 47.619 0.00 0.00 0.00 3.95
52 53 2.038387 GTCAATGACGGTAATGCCCT 57.962 50.000 0.00 0.00 0.00 5.19
63 64 1.097547 CCCCCATCTGCGTCAATGAC 61.098 60.000 2.75 2.75 0.00 3.06
64 65 1.224315 CCCCCATCTGCGTCAATGA 59.776 57.895 0.00 0.00 0.00 2.57
65 66 3.831883 CCCCCATCTGCGTCAATG 58.168 61.111 0.00 0.00 0.00 2.82
79 80 1.603739 GAGCACCAACTTCACCCCC 60.604 63.158 0.00 0.00 0.00 5.40
80 81 1.150536 TGAGCACCAACTTCACCCC 59.849 57.895 0.00 0.00 0.00 4.95
81 82 2.331265 GTGAGCACCAACTTCACCC 58.669 57.895 0.00 0.00 0.00 4.61
105 106 0.247736 AAGCTCTGGACGGTGATCAC 59.752 55.000 17.91 17.91 0.00 3.06
106 107 0.976641 AAAGCTCTGGACGGTGATCA 59.023 50.000 0.00 0.00 0.00 2.92
107 108 1.646189 GAAAGCTCTGGACGGTGATC 58.354 55.000 0.00 0.00 0.00 2.92
108 109 0.250513 GGAAAGCTCTGGACGGTGAT 59.749 55.000 0.00 0.00 0.00 3.06
109 110 0.832135 AGGAAAGCTCTGGACGGTGA 60.832 55.000 0.00 0.00 0.00 4.02
110 111 0.390472 GAGGAAAGCTCTGGACGGTG 60.390 60.000 0.00 0.00 0.00 4.94
111 112 1.545706 GGAGGAAAGCTCTGGACGGT 61.546 60.000 0.00 0.00 0.00 4.83
112 113 1.219393 GGAGGAAAGCTCTGGACGG 59.781 63.158 0.00 0.00 0.00 4.79
113 114 1.153745 CGGAGGAAAGCTCTGGACG 60.154 63.158 0.00 0.00 0.00 4.79
114 115 0.827368 ATCGGAGGAAAGCTCTGGAC 59.173 55.000 0.00 0.00 0.00 4.02
115 116 0.826715 CATCGGAGGAAAGCTCTGGA 59.173 55.000 0.00 0.00 0.00 3.86
116 117 0.539051 ACATCGGAGGAAAGCTCTGG 59.461 55.000 0.00 0.00 0.00 3.86
117 118 3.388308 CATACATCGGAGGAAAGCTCTG 58.612 50.000 0.00 0.00 0.00 3.35
118 119 2.366916 CCATACATCGGAGGAAAGCTCT 59.633 50.000 0.00 0.00 0.00 4.09
119 120 2.760374 CCATACATCGGAGGAAAGCTC 58.240 52.381 0.00 0.00 0.00 4.09
120 121 1.202698 GCCATACATCGGAGGAAAGCT 60.203 52.381 0.00 0.00 0.00 3.74
121 122 1.202698 AGCCATACATCGGAGGAAAGC 60.203 52.381 0.00 0.00 0.00 3.51
122 123 2.918712 AGCCATACATCGGAGGAAAG 57.081 50.000 0.00 0.00 0.00 2.62
123 124 2.037251 GCTAGCCATACATCGGAGGAAA 59.963 50.000 2.29 0.00 0.00 3.13
124 125 1.618837 GCTAGCCATACATCGGAGGAA 59.381 52.381 2.29 0.00 0.00 3.36
125 126 1.257743 GCTAGCCATACATCGGAGGA 58.742 55.000 2.29 0.00 0.00 3.71
126 127 0.109086 CGCTAGCCATACATCGGAGG 60.109 60.000 9.66 0.00 0.00 4.30
127 128 0.109086 CCGCTAGCCATACATCGGAG 60.109 60.000 9.66 0.00 39.23 4.63
128 129 0.826256 ACCGCTAGCCATACATCGGA 60.826 55.000 9.66 0.00 40.04 4.55
129 130 0.667487 CACCGCTAGCCATACATCGG 60.667 60.000 9.66 4.22 42.24 4.18
130 131 1.284982 GCACCGCTAGCCATACATCG 61.285 60.000 9.66 0.00 0.00 3.84
131 132 0.034059 AGCACCGCTAGCCATACATC 59.966 55.000 9.66 0.00 36.99 3.06
132 133 0.034059 GAGCACCGCTAGCCATACAT 59.966 55.000 9.66 0.00 39.88 2.29
133 134 1.441729 GAGCACCGCTAGCCATACA 59.558 57.895 9.66 0.00 39.88 2.29
134 135 1.661821 CGAGCACCGCTAGCCATAC 60.662 63.158 9.66 0.00 39.88 2.39
135 136 2.728180 CGAGCACCGCTAGCCATA 59.272 61.111 9.66 0.00 39.88 2.74
146 147 3.558411 GATCTGCACGGCGAGCAC 61.558 66.667 27.36 14.70 37.02 4.40
147 148 3.300934 AAGATCTGCACGGCGAGCA 62.301 57.895 28.80 28.80 40.19 4.26
148 149 2.510238 AAGATCTGCACGGCGAGC 60.510 61.111 22.31 22.31 0.00 5.03
149 150 1.446792 ACAAGATCTGCACGGCGAG 60.447 57.895 16.62 7.03 0.00 5.03
150 151 1.737735 CACAAGATCTGCACGGCGA 60.738 57.895 16.62 0.00 0.00 5.54
151 152 2.743752 CCACAAGATCTGCACGGCG 61.744 63.158 4.80 4.80 0.00 6.46
152 153 3.044059 GCCACAAGATCTGCACGGC 62.044 63.158 0.00 2.79 32.74 5.68
153 154 2.401766 GGCCACAAGATCTGCACGG 61.402 63.158 0.00 0.00 0.00 4.94
154 155 2.743752 CGGCCACAAGATCTGCACG 61.744 63.158 2.24 0.00 0.00 5.34
155 156 3.044059 GCGGCCACAAGATCTGCAC 62.044 63.158 2.24 0.00 32.64 4.57
156 157 2.747460 GCGGCCACAAGATCTGCA 60.747 61.111 2.24 0.00 32.64 4.41
157 158 3.512516 GGCGGCCACAAGATCTGC 61.513 66.667 15.62 0.00 0.00 4.26
510 511 3.960237 CGAAGTGGCGCCTTAACA 58.040 55.556 29.70 2.88 0.00 2.41
528 529 1.226746 GGAGACTCCGTGTTGGTTTG 58.773 55.000 5.55 0.00 39.52 2.93
529 530 0.108019 GGGAGACTCCGTGTTGGTTT 59.892 55.000 15.46 0.00 37.43 3.27
560 561 8.950007 TTTCTAAAAATTATGGGTGAAGGAGT 57.050 30.769 0.00 0.00 0.00 3.85
566 567 8.192110 GCGGTATTTTCTAAAAATTATGGGTGA 58.808 33.333 3.24 0.00 0.00 4.02
574 575 6.014925 ACTGGTGGCGGTATTTTCTAAAAATT 60.015 34.615 3.24 0.00 0.00 1.82
583 585 1.530323 GTCACTGGTGGCGGTATTTT 58.470 50.000 0.70 0.00 0.00 1.82
587 589 0.324923 ATAGGTCACTGGTGGCGGTA 60.325 55.000 0.70 0.00 35.71 4.02
592 594 2.102420 TGCGATAATAGGTCACTGGTGG 59.898 50.000 0.70 0.00 0.00 4.61
598 600 3.006967 AGACCCATGCGATAATAGGTCAC 59.993 47.826 13.70 0.00 45.02 3.67
599 601 3.006859 CAGACCCATGCGATAATAGGTCA 59.993 47.826 13.70 0.00 45.02 4.02
600 602 3.258372 TCAGACCCATGCGATAATAGGTC 59.742 47.826 5.62 5.62 43.33 3.85
602 604 3.961480 TCAGACCCATGCGATAATAGG 57.039 47.619 0.00 0.00 0.00 2.57
603 605 7.267857 TCATAATCAGACCCATGCGATAATAG 58.732 38.462 0.00 0.00 0.00 1.73
605 607 6.053632 TCATAATCAGACCCATGCGATAAT 57.946 37.500 0.00 0.00 0.00 1.28
607 609 5.482163 TTCATAATCAGACCCATGCGATA 57.518 39.130 0.00 0.00 0.00 2.92
611 613 5.964758 TGTTTTTCATAATCAGACCCATGC 58.035 37.500 0.00 0.00 0.00 4.06
613 615 7.339212 TCGATTGTTTTTCATAATCAGACCCAT 59.661 33.333 0.00 0.00 31.87 4.00
614 616 6.657117 TCGATTGTTTTTCATAATCAGACCCA 59.343 34.615 0.00 0.00 31.87 4.51
616 618 9.226345 GAATCGATTGTTTTTCATAATCAGACC 57.774 33.333 16.96 0.00 31.87 3.85
617 619 9.773328 TGAATCGATTGTTTTTCATAATCAGAC 57.227 29.630 16.96 0.00 31.87 3.51
620 622 9.075519 GCTTGAATCGATTGTTTTTCATAATCA 57.924 29.630 16.96 0.00 31.87 2.57
621 623 8.255143 CGCTTGAATCGATTGTTTTTCATAATC 58.745 33.333 16.96 0.00 0.00 1.75
622 624 7.754924 ACGCTTGAATCGATTGTTTTTCATAAT 59.245 29.630 16.96 0.00 0.00 1.28
623 625 7.060518 CACGCTTGAATCGATTGTTTTTCATAA 59.939 33.333 16.96 0.00 0.00 1.90
624 626 6.522855 CACGCTTGAATCGATTGTTTTTCATA 59.477 34.615 16.96 0.00 0.00 2.15
625 627 5.343058 CACGCTTGAATCGATTGTTTTTCAT 59.657 36.000 16.96 0.00 0.00 2.57
626 628 4.674662 CACGCTTGAATCGATTGTTTTTCA 59.325 37.500 16.96 3.87 0.00 2.69
627 629 4.431599 GCACGCTTGAATCGATTGTTTTTC 60.432 41.667 16.96 0.80 0.00 2.29
634 645 1.398390 GAAGGCACGCTTGAATCGATT 59.602 47.619 11.20 11.20 0.00 3.34
635 646 1.009829 GAAGGCACGCTTGAATCGAT 58.990 50.000 0.00 0.00 0.00 3.59
636 647 0.320334 TGAAGGCACGCTTGAATCGA 60.320 50.000 0.00 0.00 0.00 3.59
637 648 0.516877 TTGAAGGCACGCTTGAATCG 59.483 50.000 0.00 0.00 0.00 3.34
643 654 3.123050 GTTTCATTTTGAAGGCACGCTT 58.877 40.909 0.00 0.00 37.70 4.68
653 664 9.581289 TTAAAGTATCTCTGGGTTTCATTTTGA 57.419 29.630 0.00 0.00 0.00 2.69
658 669 9.232473 GTTCTTTAAAGTATCTCTGGGTTTCAT 57.768 33.333 14.74 0.00 0.00 2.57
659 670 7.386848 CGTTCTTTAAAGTATCTCTGGGTTTCA 59.613 37.037 14.74 0.00 0.00 2.69
660 671 7.387122 ACGTTCTTTAAAGTATCTCTGGGTTTC 59.613 37.037 14.74 0.00 0.00 2.78
662 673 6.649557 CACGTTCTTTAAAGTATCTCTGGGTT 59.350 38.462 14.74 0.00 0.00 4.11
666 677 7.869016 TGACACGTTCTTTAAAGTATCTCTG 57.131 36.000 14.74 6.88 0.00 3.35
667 678 7.063544 GCATGACACGTTCTTTAAAGTATCTCT 59.936 37.037 14.74 0.00 0.00 3.10
668 679 7.148639 TGCATGACACGTTCTTTAAAGTATCTC 60.149 37.037 14.74 4.76 0.00 2.75
671 682 6.795098 TGCATGACACGTTCTTTAAAGTAT 57.205 33.333 14.74 0.00 0.00 2.12
673 684 5.493133 TTGCATGACACGTTCTTTAAAGT 57.507 34.783 14.74 0.00 0.00 2.66
677 688 3.880490 AGGTTTGCATGACACGTTCTTTA 59.120 39.130 0.00 0.00 0.00 1.85
681 692 3.889196 TTAGGTTTGCATGACACGTTC 57.111 42.857 0.00 0.00 0.00 3.95
695 706 8.810990 TGATCGTGGGTAAATATTTTTAGGTT 57.189 30.769 5.91 0.00 0.00 3.50
699 710 8.728833 ACGTTTGATCGTGGGTAAATATTTTTA 58.271 29.630 5.91 0.00 42.56 1.52
702 713 6.746745 ACGTTTGATCGTGGGTAAATATTT 57.253 33.333 5.89 5.89 42.56 1.40
716 727 1.401539 GCTTTGGAGGCACGTTTGATC 60.402 52.381 0.00 0.00 0.00 2.92
760 771 3.123621 GCAACGATTTCAATCAGTCTCGT 59.876 43.478 0.00 0.00 40.68 4.18
762 773 4.668576 TGCAACGATTTCAATCAGTCTC 57.331 40.909 0.00 0.00 35.11 3.36
763 774 4.516698 ACTTGCAACGATTTCAATCAGTCT 59.483 37.500 0.00 0.00 35.11 3.24
774 785 4.499019 CCTGTTTGGTTACTTGCAACGATT 60.499 41.667 0.00 0.00 0.00 3.34
841 856 7.220875 GCGGCATTTCTTTTTCTTCCTAAATAG 59.779 37.037 0.00 0.00 0.00 1.73
956 2227 3.479269 GAAAGTCGGTGGCGAGCG 61.479 66.667 14.47 14.47 44.61 5.03
1068 2339 3.000819 TGTGGTACCTGGAGGCCG 61.001 66.667 14.36 0.00 39.32 6.13
1177 2448 1.740718 CGAGAAGGCCCTACAGAAAGC 60.741 57.143 0.00 0.00 0.00 3.51
1183 2454 0.902984 TGCTTCGAGAAGGCCCTACA 60.903 55.000 13.92 0.67 38.80 2.74
1496 2767 0.673644 CAAGCGGTAGGACAAGGGTG 60.674 60.000 0.00 0.00 0.00 4.61
1594 2867 9.783081 TCCCTTTTCTTTTAACTCGTACTTATT 57.217 29.630 0.00 0.00 0.00 1.40
1595 2868 9.433153 CTCCCTTTTCTTTTAACTCGTACTTAT 57.567 33.333 0.00 0.00 0.00 1.73
1596 2869 8.641541 TCTCCCTTTTCTTTTAACTCGTACTTA 58.358 33.333 0.00 0.00 0.00 2.24
1597 2870 7.503549 TCTCCCTTTTCTTTTAACTCGTACTT 58.496 34.615 0.00 0.00 0.00 2.24
1598 2871 7.059202 TCTCCCTTTTCTTTTAACTCGTACT 57.941 36.000 0.00 0.00 0.00 2.73
1599 2872 7.719778 TTCTCCCTTTTCTTTTAACTCGTAC 57.280 36.000 0.00 0.00 0.00 3.67
1603 2876 5.913514 GCGTTTCTCCCTTTTCTTTTAACTC 59.086 40.000 0.00 0.00 0.00 3.01
1748 3023 4.496341 CCAACCAAGCTAATCGTGCATAAG 60.496 45.833 0.00 0.00 0.00 1.73
1796 3072 9.847224 TTCTTTCTGAAGACTTAAGGTTTATGT 57.153 29.630 7.53 0.00 41.46 2.29
1903 3181 6.416750 GGAAGGAAAACTTTGTGTTGAATACG 59.583 38.462 0.00 0.00 40.21 3.06
1948 3226 4.348168 TGAAGGAAAAGACCTAGCAAGACT 59.652 41.667 0.00 0.00 39.62 3.24
1955 3233 4.874966 CAGAGCATGAAGGAAAAGACCTAG 59.125 45.833 0.00 0.00 39.62 3.02
1961 3239 4.843220 ACAACAGAGCATGAAGGAAAAG 57.157 40.909 0.00 0.00 0.00 2.27
1970 3249 5.823209 TGGATATCAAACAACAGAGCATG 57.177 39.130 4.83 0.00 0.00 4.06
1974 3253 8.396390 CAAAGAGATGGATATCAAACAACAGAG 58.604 37.037 4.83 0.00 35.70 3.35
2289 3569 9.440761 AACCTAGAGTCCTGAATACAAATATCT 57.559 33.333 0.00 0.00 0.00 1.98
2293 3573 9.232473 GAAAAACCTAGAGTCCTGAATACAAAT 57.768 33.333 0.00 0.00 0.00 2.32
2294 3574 8.215050 TGAAAAACCTAGAGTCCTGAATACAAA 58.785 33.333 0.00 0.00 0.00 2.83
2295 3575 7.741785 TGAAAAACCTAGAGTCCTGAATACAA 58.258 34.615 0.00 0.00 0.00 2.41
2296 3576 7.234782 TCTGAAAAACCTAGAGTCCTGAATACA 59.765 37.037 0.00 0.00 0.00 2.29
2297 3577 7.612677 TCTGAAAAACCTAGAGTCCTGAATAC 58.387 38.462 0.00 0.00 0.00 1.89
2298 3578 7.455008 ACTCTGAAAAACCTAGAGTCCTGAATA 59.545 37.037 0.00 0.00 45.90 1.75
2299 3579 6.271159 ACTCTGAAAAACCTAGAGTCCTGAAT 59.729 38.462 0.00 0.00 45.90 2.57
2300 3580 5.602978 ACTCTGAAAAACCTAGAGTCCTGAA 59.397 40.000 0.00 0.00 45.90 3.02
2301 3581 5.148502 ACTCTGAAAAACCTAGAGTCCTGA 58.851 41.667 0.00 0.00 45.90 3.86
2302 3582 5.476091 ACTCTGAAAAACCTAGAGTCCTG 57.524 43.478 0.00 0.00 45.90 3.86
2303 3583 7.186268 AGATACTCTGAAAAACCTAGAGTCCT 58.814 38.462 9.17 6.15 45.90 3.85
2304 3584 7.412853 AGATACTCTGAAAAACCTAGAGTCC 57.587 40.000 9.17 4.26 45.90 3.85
2356 3680 2.681344 GTGGTTCGTCAAGTGAAACCTT 59.319 45.455 13.48 0.00 37.80 3.50
2363 3687 3.057734 GGAGTAAGTGGTTCGTCAAGTG 58.942 50.000 0.00 0.00 0.00 3.16
2371 3695 5.048154 AGAGAAACGTAGGAGTAAGTGGTTC 60.048 44.000 0.00 0.00 0.00 3.62
2422 3747 1.331756 GAATGGACGCCAATACAGCTG 59.668 52.381 13.48 13.48 36.95 4.24
2476 3801 4.457466 TGTACTCTTGTTTGAACCTTCCC 58.543 43.478 0.00 0.00 0.00 3.97
2534 3859 0.690411 CAGAGACCCCTCCAGCATCT 60.690 60.000 0.00 0.00 40.30 2.90
2542 3867 4.898861 ACATAGATTTCTCAGAGACCCCTC 59.101 45.833 0.00 0.00 39.72 4.30
2696 4021 3.941573 TCTGTCATGATGCAGCTACAAA 58.058 40.909 2.53 0.00 33.09 2.83
2825 4150 2.508526 CCAGGAGGAACAGTTTGAAGG 58.491 52.381 0.00 0.00 36.89 3.46
3083 6603 6.634805 TGAGATTTGTTGCTAGAAGTCTAGG 58.365 40.000 15.47 0.41 44.63 3.02
3132 6652 5.528690 GCTCAAGTATGATCAGCACCAAATA 59.471 40.000 0.09 0.00 34.37 1.40
3133 6653 4.337555 GCTCAAGTATGATCAGCACCAAAT 59.662 41.667 0.09 0.00 34.37 2.32
3223 6743 6.405508 GCATCATGTCTTCAATCTTCACCAAT 60.406 38.462 0.00 0.00 0.00 3.16
3459 6979 1.279271 AGCAACTGCCTAGTACAAGGG 59.721 52.381 0.00 0.00 43.38 3.95
3542 7062 1.676006 GCCATTGACCACCTTATTCCG 59.324 52.381 0.00 0.00 0.00 4.30
3577 7097 5.546621 AAAGCCATAGACGCTTCCTATAA 57.453 39.130 0.00 0.00 45.69 0.98
3688 7208 2.315925 TTCTAGGCTCGCTTGGAATG 57.684 50.000 0.00 0.00 0.00 2.67
3731 7251 2.093606 TGTGGACGTGTGGTGAAAACTA 60.094 45.455 0.00 0.00 0.00 2.24
3732 7252 1.339247 TGTGGACGTGTGGTGAAAACT 60.339 47.619 0.00 0.00 0.00 2.66
3733 7253 1.088306 TGTGGACGTGTGGTGAAAAC 58.912 50.000 0.00 0.00 0.00 2.43
3734 7254 1.088306 GTGTGGACGTGTGGTGAAAA 58.912 50.000 0.00 0.00 0.00 2.29
3735 7255 0.250793 AGTGTGGACGTGTGGTGAAA 59.749 50.000 0.00 0.00 0.00 2.69
3737 7257 1.040893 AGAGTGTGGACGTGTGGTGA 61.041 55.000 0.00 0.00 0.00 4.02
3738 7258 0.179084 AAGAGTGTGGACGTGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
3825 7514 9.788960 GGGAACAGAGAATACATGTTTTTATTC 57.211 33.333 2.30 7.32 37.29 1.75
3841 9165 5.246981 ACAATCAGATTTGGGAACAGAGA 57.753 39.130 0.00 0.00 44.54 3.10
4082 9409 3.407424 TGTCCATGAAGAGAACTGTGG 57.593 47.619 0.00 0.00 0.00 4.17
4205 9541 2.041620 TGCTCATTTCTGCCCCTAAGTT 59.958 45.455 0.00 0.00 0.00 2.66
4362 9702 7.850193 AGGAACATGCCAAAAATTATGTACAT 58.150 30.769 13.93 13.93 33.70 2.29
4374 9714 8.830915 TCCTATAAAATAAGGAACATGCCAAA 57.169 30.769 0.00 0.00 38.97 3.28
4631 9971 1.067060 GCACCACTTCAAACTTGGGAC 59.933 52.381 0.00 0.00 34.41 4.46
4651 9991 4.795278 GCTAATTGTGAAAAATCGCTCCTG 59.205 41.667 0.00 0.00 0.00 3.86
4725 10065 0.180406 GCTTCCCTCCAAAGCCGATA 59.820 55.000 0.00 0.00 42.63 2.92
4890 10230 1.148759 GCTCCGGCTTCTCGTCATTC 61.149 60.000 0.00 0.00 35.22 2.67
4914 10254 0.473117 TCTCAAGGACCGTCCCCTTT 60.473 55.000 14.32 0.00 41.79 3.11
5063 10406 7.670559 AGAGTAGCGACCAGATATAAATAAGGT 59.329 37.037 0.00 0.00 0.00 3.50
5069 10412 6.546403 ACTCAAGAGTAGCGACCAGATATAAA 59.454 38.462 0.00 0.00 40.43 1.40
5182 10530 3.492011 TCGAACTTGGAAGAAAAGTACGC 59.508 43.478 0.00 0.00 36.87 4.42
5194 10542 0.541998 TCCCTGCTCTCGAACTTGGA 60.542 55.000 0.00 0.00 0.00 3.53
5197 10545 2.217510 TACTCCCTGCTCTCGAACTT 57.782 50.000 0.00 0.00 0.00 2.66
5218 10566 1.239347 GTGGTTTCCAGAACAGCTCC 58.761 55.000 0.00 0.00 32.34 4.70
5219 10567 1.239347 GGTGGTTTCCAGAACAGCTC 58.761 55.000 0.00 0.00 32.34 4.09
5220 10568 0.550914 TGGTGGTTTCCAGAACAGCT 59.449 50.000 0.00 0.00 32.34 4.24
5221 10569 3.109847 TGGTGGTTTCCAGAACAGC 57.890 52.632 0.00 0.00 32.34 4.40
5228 10576 2.429930 CGGAGCTGGTGGTTTCCA 59.570 61.111 0.00 0.00 36.00 3.53
5241 10589 1.312815 GATCCTTGGATTTGGCGGAG 58.687 55.000 3.43 0.00 0.00 4.63
5242 10590 0.106719 GGATCCTTGGATTTGGCGGA 60.107 55.000 3.84 0.00 0.00 5.54
5243 10591 1.447317 CGGATCCTTGGATTTGGCGG 61.447 60.000 10.75 0.00 0.00 6.13
5244 10592 2.024918 CGGATCCTTGGATTTGGCG 58.975 57.895 10.75 0.00 0.00 5.69
5245 10593 1.735973 GCGGATCCTTGGATTTGGC 59.264 57.895 10.75 0.00 0.00 4.52
5246 10594 1.447317 CCGCGGATCCTTGGATTTGG 61.447 60.000 24.07 0.80 0.00 3.28
5247 10595 0.463654 TCCGCGGATCCTTGGATTTG 60.464 55.000 27.28 0.00 0.00 2.32
5248 10596 0.179045 CTCCGCGGATCCTTGGATTT 60.179 55.000 31.19 0.00 0.00 2.17
5249 10597 1.338136 ACTCCGCGGATCCTTGGATT 61.338 55.000 31.19 12.61 0.00 3.01
5250 10598 0.469331 TACTCCGCGGATCCTTGGAT 60.469 55.000 31.19 9.21 0.00 3.41
5251 10599 1.076559 TACTCCGCGGATCCTTGGA 60.077 57.895 31.19 10.82 0.00 3.53
5252 10600 1.067582 GTACTCCGCGGATCCTTGG 59.932 63.158 31.19 18.54 0.00 3.61
5253 10601 1.067582 GGTACTCCGCGGATCCTTG 59.932 63.158 31.19 19.35 0.00 3.61
5254 10602 1.076192 AGGTACTCCGCGGATCCTT 60.076 57.895 31.19 15.72 39.05 3.36
5255 10603 1.828660 CAGGTACTCCGCGGATCCT 60.829 63.158 31.19 29.70 34.60 3.24
5256 10604 1.673808 AACAGGTACTCCGCGGATCC 61.674 60.000 31.19 28.07 34.60 3.36
5257 10605 0.175073 AAACAGGTACTCCGCGGATC 59.825 55.000 31.19 20.90 34.60 3.36
5258 10606 1.477553 TAAACAGGTACTCCGCGGAT 58.522 50.000 31.19 20.63 34.60 4.18
5259 10607 1.477553 ATAAACAGGTACTCCGCGGA 58.522 50.000 29.03 29.03 34.60 5.54
5260 10608 2.544486 GGTATAAACAGGTACTCCGCGG 60.544 54.545 22.12 22.12 34.60 6.46
5261 10609 2.735823 GGTATAAACAGGTACTCCGCG 58.264 52.381 0.00 0.00 34.60 6.46
5262 10610 2.358898 TCGGTATAAACAGGTACTCCGC 59.641 50.000 0.00 0.00 34.60 5.54
5263 10611 4.637483 TTCGGTATAAACAGGTACTCCG 57.363 45.455 0.00 0.00 34.60 4.63
5264 10612 6.314648 CCTTTTTCGGTATAAACAGGTACTCC 59.685 42.308 0.00 0.00 34.60 3.85
5265 10613 6.314648 CCCTTTTTCGGTATAAACAGGTACTC 59.685 42.308 0.00 0.00 35.43 2.59
5266 10614 6.175471 CCCTTTTTCGGTATAAACAGGTACT 58.825 40.000 0.00 0.00 35.43 2.73
5267 10615 5.939883 ACCCTTTTTCGGTATAAACAGGTAC 59.060 40.000 0.00 0.00 35.43 3.34
5268 10616 6.125589 ACCCTTTTTCGGTATAAACAGGTA 57.874 37.500 0.00 0.00 35.43 3.08
5269 10617 4.989277 ACCCTTTTTCGGTATAAACAGGT 58.011 39.130 0.00 0.00 35.43 4.00
5270 10618 5.970317 AACCCTTTTTCGGTATAAACAGG 57.030 39.130 0.00 0.00 36.48 4.00
5271 10619 6.384224 GGAAACCCTTTTTCGGTATAAACAG 58.616 40.000 0.00 0.00 31.69 3.16
5344 10694 1.958205 GTGTGTTCTGCTGCTCGCT 60.958 57.895 0.00 0.00 40.11 4.93
5374 10724 4.803613 GTCGTTGGCATTTGTTTCTTCTTT 59.196 37.500 0.00 0.00 0.00 2.52
5415 10765 4.545706 GCGGTGGCGGATCATCCA 62.546 66.667 4.06 0.00 35.91 3.41
5444 10794 2.820787 TCGGTCTGTGGTGTTTTGTTTT 59.179 40.909 0.00 0.00 0.00 2.43
5485 10835 2.575532 CTTCTTGGAGGTGTTGCTTGA 58.424 47.619 0.00 0.00 0.00 3.02
5492 10842 0.329596 GCATCCCTTCTTGGAGGTGT 59.670 55.000 0.00 0.00 38.45 4.16
5542 10892 1.539496 CGTGTCCGGAGAAACCTGAAA 60.539 52.381 3.06 0.00 33.87 2.69
5543 10893 0.032952 CGTGTCCGGAGAAACCTGAA 59.967 55.000 3.06 0.00 33.87 3.02
5619 10970 4.539083 AACGCGGTGACACCTGCA 62.539 61.111 28.49 0.00 37.54 4.41
5642 10993 2.355513 GGAGAAATCTCTGCTGGCTTCA 60.356 50.000 10.09 0.00 42.48 3.02
5649 11000 0.835941 ATGCGGGAGAAATCTCTGCT 59.164 50.000 20.56 9.90 42.48 4.24
5654 11005 2.369394 GTTGGAATGCGGGAGAAATCT 58.631 47.619 0.00 0.00 0.00 2.40
5788 11141 0.251832 TGAGCTTCTCTCCGGTCCTT 60.252 55.000 0.00 0.00 41.18 3.36
6013 11366 1.794714 ACTAGGGGTGGCACTAGATG 58.205 55.000 18.45 8.10 39.16 2.90
6014 11367 2.119495 CAACTAGGGGTGGCACTAGAT 58.881 52.381 18.45 3.55 39.16 1.98
6015 11368 1.568504 CAACTAGGGGTGGCACTAGA 58.431 55.000 18.45 0.00 39.16 2.43
6016 11369 0.541863 CCAACTAGGGGTGGCACTAG 59.458 60.000 18.45 13.59 41.83 2.57
6017 11370 0.178885 ACCAACTAGGGGTGGCACTA 60.179 55.000 18.45 0.98 43.89 2.74
6018 11371 1.065997 AACCAACTAGGGGTGGCACT 61.066 55.000 18.45 0.00 43.89 4.40
6019 11372 0.178973 AAACCAACTAGGGGTGGCAC 60.179 55.000 9.70 9.70 43.89 5.01
6020 11373 0.558712 AAAACCAACTAGGGGTGGCA 59.441 50.000 8.90 0.00 43.89 4.92
6021 11374 0.966179 CAAAACCAACTAGGGGTGGC 59.034 55.000 8.90 0.00 43.89 5.01
6022 11375 1.146152 TCCAAAACCAACTAGGGGTGG 59.854 52.381 8.90 8.22 43.89 4.61
6023 11376 2.158519 ACTCCAAAACCAACTAGGGGTG 60.159 50.000 8.90 0.00 43.89 4.61
6024 11377 2.141067 ACTCCAAAACCAACTAGGGGT 58.859 47.619 2.70 2.70 43.89 4.95
6025 11378 2.971901 ACTCCAAAACCAACTAGGGG 57.028 50.000 0.00 0.00 43.89 4.79
6026 11379 5.414765 GTCAATACTCCAAAACCAACTAGGG 59.585 44.000 0.00 0.00 43.89 3.53
6027 11380 5.121768 CGTCAATACTCCAAAACCAACTAGG 59.878 44.000 0.00 0.00 45.67 3.02
6028 11381 5.929992 TCGTCAATACTCCAAAACCAACTAG 59.070 40.000 0.00 0.00 0.00 2.57
6029 11382 5.697633 GTCGTCAATACTCCAAAACCAACTA 59.302 40.000 0.00 0.00 0.00 2.24
6030 11383 4.514066 GTCGTCAATACTCCAAAACCAACT 59.486 41.667 0.00 0.00 0.00 3.16
6031 11384 4.273969 TGTCGTCAATACTCCAAAACCAAC 59.726 41.667 0.00 0.00 0.00 3.77
6032 11385 4.452825 TGTCGTCAATACTCCAAAACCAA 58.547 39.130 0.00 0.00 0.00 3.67
6033 11386 4.074627 TGTCGTCAATACTCCAAAACCA 57.925 40.909 0.00 0.00 0.00 3.67
6034 11387 5.209977 GTTTGTCGTCAATACTCCAAAACC 58.790 41.667 0.00 0.00 33.32 3.27
6035 11388 5.008316 AGGTTTGTCGTCAATACTCCAAAAC 59.992 40.000 0.00 0.00 33.86 2.43
6036 11389 5.127491 AGGTTTGTCGTCAATACTCCAAAA 58.873 37.500 0.00 0.00 33.32 2.44
6037 11390 4.710324 AGGTTTGTCGTCAATACTCCAAA 58.290 39.130 0.00 0.00 33.32 3.28
6038 11391 4.345859 AGGTTTGTCGTCAATACTCCAA 57.654 40.909 0.00 0.00 33.32 3.53
6039 11392 5.471556 TTAGGTTTGTCGTCAATACTCCA 57.528 39.130 0.00 0.00 33.32 3.86
6040 11393 6.592607 TCAATTAGGTTTGTCGTCAATACTCC 59.407 38.462 0.00 0.00 33.32 3.85
6041 11394 7.201530 CCTCAATTAGGTTTGTCGTCAATACTC 60.202 40.741 0.00 0.00 40.94 2.59
6042 11395 6.594159 CCTCAATTAGGTTTGTCGTCAATACT 59.406 38.462 0.00 0.88 40.94 2.12
6043 11396 6.183360 CCCTCAATTAGGTTTGTCGTCAATAC 60.183 42.308 0.00 0.00 44.90 1.89
6044 11397 5.878116 CCCTCAATTAGGTTTGTCGTCAATA 59.122 40.000 0.00 0.00 44.90 1.90
6045 11398 4.700213 CCCTCAATTAGGTTTGTCGTCAAT 59.300 41.667 0.00 0.00 44.90 2.57
6046 11399 4.069304 CCCTCAATTAGGTTTGTCGTCAA 58.931 43.478 0.00 0.00 44.90 3.18
6047 11400 3.325425 TCCCTCAATTAGGTTTGTCGTCA 59.675 43.478 0.00 0.00 44.90 4.35
6048 11401 3.683340 GTCCCTCAATTAGGTTTGTCGTC 59.317 47.826 0.00 0.00 44.90 4.20
6049 11402 3.326880 AGTCCCTCAATTAGGTTTGTCGT 59.673 43.478 0.00 0.00 44.90 4.34
6050 11403 3.939066 AGTCCCTCAATTAGGTTTGTCG 58.061 45.455 0.00 0.00 44.90 4.35
6051 11404 6.884836 ACATTAGTCCCTCAATTAGGTTTGTC 59.115 38.462 0.00 0.00 44.90 3.18
6052 11405 6.659242 CACATTAGTCCCTCAATTAGGTTTGT 59.341 38.462 0.00 0.00 44.90 2.83
6053 11406 6.659242 ACACATTAGTCCCTCAATTAGGTTTG 59.341 38.462 0.00 0.00 44.90 2.93
6054 11407 6.790319 ACACATTAGTCCCTCAATTAGGTTT 58.210 36.000 0.00 0.00 44.90 3.27
6055 11408 6.388619 ACACATTAGTCCCTCAATTAGGTT 57.611 37.500 0.00 0.00 44.90 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.