AutoCloner

Multiple sequence alignment - TraesCS5A01G125800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G125800	chr5A	100.000	2864	0	0	1	2864	276981950	276979087	0.000000e+00	5289
1	TraesCS5A01G125800	chr5A	88.821	814	49	16	842	1654	276111550	276112322	0.000000e+00	961
2	TraesCS5A01G125800	chr5A	86.538	520	63	7	1	517	225964680	225964165	1.490000e-157	566
3	TraesCS5A01G125800	chr5A	85.252	278	23	6	1646	1912	276113897	276114167	1.310000e-68	270
4	TraesCS5A01G125800	chr5A	88.341	223	16	3	1918	2139	276123629	276123842	2.830000e-65	259
5	TraesCS5A01G125800	chr5D	96.607	2063	38	12	816	2864	213128917	213130961	0.000000e+00	3393
6	TraesCS5A01G125800	chr5D	88.070	1031	65	25	894	1913	212627070	212628053	0.000000e+00	1170
7	TraesCS5A01G125800	chr5D	86.486	518	60	10	14	526	143605207	143604695	6.930000e-156	560
8	TraesCS5A01G125800	chr5D	84.058	276	35	5	518	784	213128303	213128578	1.020000e-64	257
9	TraesCS5A01G125800	chr5D	86.099	223	22	2	1918	2139	219540290	219540504	6.170000e-57	231
10	TraesCS5A01G125800	chr5D	83.125	160	20	3	661	813	2134641	2134800	3.850000e-29	139
11	TraesCS5A01G125800	chr5B	93.651	1323	44	20	594	1912	227120483	227121769	0.000000e+00	1941
12	TraesCS5A01G125800	chr5B	95.703	861	15	9	1909	2765	227121818	227122660	0.000000e+00	1365
13	TraesCS5A01G125800	chr5B	86.004	1086	84	34	841	1913	226759045	226760075	0.000000e+00	1101
14	TraesCS5A01G125800	chr5B	94.828	116	4	2	2750	2864	227122675	227122789	2.270000e-41	180
15	TraesCS5A01G125800	chr5B	72.605	522	111	29	1151	1659	664998728	664998226	2.970000e-30	143
16	TraesCS5A01G125800	chr6A	88.996	518	52	4	1	517	349793468	349792955	1.120000e-178	636
17	TraesCS5A01G125800	chr2A	88.975	517	53	4	1	517	719963534	719964046	1.120000e-178	636
18	TraesCS5A01G125800	chr2A	88.550	524	55	5	1	523	719935242	719935761	5.210000e-177	630
19	TraesCS5A01G125800	chr2A	88.031	518	54	5	1	517	163660835	163661345	8.780000e-170	606
20	TraesCS5A01G125800	chr4A	84.438	649	78	12	1117	1746	487868994	487868350	4.050000e-173	617
21	TraesCS5A01G125800	chr4A	87.600	500	57	5	19	517	398663699	398664194	2.470000e-160	575
22	TraesCS5A01G125800	chr3A	87.716	521	58	6	1	519	445891347	445890831	1.140000e-168	603
23	TraesCS5A01G125800	chr4D	83.975	649	81	13	1117	1746	93841194	93841838	4.080000e-168	601
24	TraesCS5A01G125800	chr4D	80.247	162	23	5	661	813	385521337	385521176	2.330000e-21	113
25	TraesCS5A01G125800	chr4B	83.667	649	83	13	1117	1746	132331565	132332209	8.840000e-165	590
26	TraesCS5A01G125800	chr1A	87.259	518	61	5	2	518	456475064	456474551	1.140000e-163	586
27	TraesCS5A01G125800	chr1A	80.380	158	22	6	665	813	554783235	554783392	8.390000e-21	111
28	TraesCS5A01G125800	chr7D	79.888	179	25	8	665	834	475155225	475155401	1.390000e-23	121
29	TraesCS5A01G125800	chr2B	80.864	162	21	7	661	813	794000187	794000347	5.010000e-23	119
30	TraesCS5A01G125800	chr2B	80.380	158	22	6	665	813	795075034	795075191	8.390000e-21	111
31	TraesCS5A01G125800	chr7A	80.240	167	22	8	674	831	4531902	4531738	6.480000e-22	115

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G125800	chr5A	276979087	276981950	2863	True	5289.0	5289	100.000000	1	2864	1	chr5A.!!$R2	2863
1	TraesCS5A01G125800	chr5A	276111550	276114167	2617	False	615.5	961	87.036500	842	1912	2	chr5A.!!$F2	1070
2	TraesCS5A01G125800	chr5A	225964165	225964680	515	True	566.0	566	86.538000	1	517	1	chr5A.!!$R1	516
3	TraesCS5A01G125800	chr5D	213128303	213130961	2658	False	1825.0	3393	90.332500	518	2864	2	chr5D.!!$F4	2346
4	TraesCS5A01G125800	chr5D	212627070	212628053	983	False	1170.0	1170	88.070000	894	1913	1	chr5D.!!$F2	1019
5	TraesCS5A01G125800	chr5D	143604695	143605207	512	True	560.0	560	86.486000	14	526	1	chr5D.!!$R1	512
6	TraesCS5A01G125800	chr5B	227120483	227122789	2306	False	1162.0	1941	94.727333	594	2864	3	chr5B.!!$F2	2270
7	TraesCS5A01G125800	chr5B	226759045	226760075	1030	False	1101.0	1101	86.004000	841	1913	1	chr5B.!!$F1	1072
8	TraesCS5A01G125800	chr6A	349792955	349793468	513	True	636.0	636	88.996000	1	517	1	chr6A.!!$R1	516
9	TraesCS5A01G125800	chr2A	719963534	719964046	512	False	636.0	636	88.975000	1	517	1	chr2A.!!$F3	516
10	TraesCS5A01G125800	chr2A	719935242	719935761	519	False	630.0	630	88.550000	1	523	1	chr2A.!!$F2	522
11	TraesCS5A01G125800	chr2A	163660835	163661345	510	False	606.0	606	88.031000	1	517	1	chr2A.!!$F1	516
12	TraesCS5A01G125800	chr4A	487868350	487868994	644	True	617.0	617	84.438000	1117	1746	1	chr4A.!!$R1	629
13	TraesCS5A01G125800	chr3A	445890831	445891347	516	True	603.0	603	87.716000	1	519	1	chr3A.!!$R1	518
14	TraesCS5A01G125800	chr4D	93841194	93841838	644	False	601.0	601	83.975000	1117	1746	1	chr4D.!!$F1	629
15	TraesCS5A01G125800	chr4B	132331565	132332209	644	False	590.0	590	83.667000	1117	1746	1	chr4B.!!$F1	629
16	TraesCS5A01G125800	chr1A	456474551	456475064	513	True	586.0	586	87.259000	2	518	1	chr1A.!!$R1	516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
701	715	0.173708	GAGAGGGGCGATAATAGCGG	59.826	60.0	0.0	0.0	35.0	5.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1913	3862	2.250031	TGCCCCATGATTATCAATGGC	58.75	47.619	19.37	19.37	38.23	4.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	0.323629	TTTACGAGTTCAGGCCCCTG	59.676	55.000	8.03	8.03	44.86	4.45
36	37	2.203788	AGTTCAGGCCCCTGTCGA	60.204	61.111	13.66	0.00	43.96	4.20
67	69	2.348888	CCCTACGTCTCGGTGCCTT	61.349	63.158	0.00	0.00	0.00	4.35
105	109	4.401202	TGGATTATGCGTGAGAGTTACAGA	59.599	41.667	0.00	0.00	0.00	3.41
126	130	2.124109	TGCGAACCCTTGTGCCAA	60.124	55.556	0.00	0.00	0.00	4.52
138	146	1.063070	TGTGCCAAAGGAGTGGGGTA	61.063	55.000	0.00	0.00	39.26	3.69
272	281	0.889994	GTGAATGCCTGACCATTGCA	59.110	50.000	0.00	0.00	35.67	4.08
276	285	2.154567	ATGCCTGACCATTGCAATCT	57.845	45.000	9.53	0.00	38.69	2.40
279	289	1.820519	GCCTGACCATTGCAATCTTGA	59.179	47.619	9.53	0.00	0.00	3.02
317	327	7.336427	CCTTCTATGCTCTGAGTGATTCTTTTT	59.664	37.037	6.53	0.00	0.00	1.94
340	350	4.808895	TGTATGGTCGAGTGTAATGATTGC	59.191	41.667	0.00	0.00	0.00	3.56
390	400	5.943416	TGGAATTTGTCGTTGAGTGGATTAT	59.057	36.000	0.00	0.00	0.00	1.28
392	402	7.279981	TGGAATTTGTCGTTGAGTGGATTATAG	59.720	37.037	0.00	0.00	0.00	1.31
408	418	7.721399	GTGGATTATAGTTCAGGGTGATTTCAT	59.279	37.037	0.00	0.00	0.00	2.57
450	464	7.120923	ACTTTGTGTGTCTTTAACTCTAGGA	57.879	36.000	0.00	0.00	0.00	2.94
480	494	5.667466	CCTTAGATAAGGCGTTTAGGTCAA	58.333	41.667	5.72	0.00	45.56	3.18
481	495	6.289064	CCTTAGATAAGGCGTTTAGGTCAAT	58.711	40.000	5.72	0.00	45.56	2.57
501	515	7.015064	GTCAATCCTAATACCCTTACCCTAGA	58.985	42.308	0.00	0.00	0.00	2.43
525	539	1.184970	TGTCATCGTCACTGCCCTGA	61.185	55.000	0.00	0.00	0.00	3.86
529	543	2.172483	ATCGTCACTGCCCTGACACC	62.172	60.000	10.54	0.00	40.67	4.16
580	594	7.216505	GCTTATTTAGCTTTGAAAACGACTAGC	59.783	37.037	0.00	0.00	46.77	3.42
610	624	5.772393	AACAACATCTATCAACCCCTACA	57.228	39.130	0.00	0.00	0.00	2.74
619	633	1.427368	TCAACCCCTACATGCCAACTT	59.573	47.619	0.00	0.00	0.00	2.66
633	647	3.258123	TGCCAACTTTGCTTTCTAATCCC	59.742	43.478	0.00	0.00	0.00	3.85
638	652	4.593956	ACTTTGCTTTCTAATCCCTCCTG	58.406	43.478	0.00	0.00	0.00	3.86
647	661	0.983378	AATCCCTCCTGCCTAAGCGT	60.983	55.000	0.00	0.00	44.31	5.07
658	672	2.104111	TGCCTAAGCGTATTGTGCCTAT	59.896	45.455	0.00	0.00	44.31	2.57
670	684	3.085952	TGTGCCTATTAAGCTTTGCCT	57.914	42.857	3.20	0.00	0.00	4.75
672	686	3.945285	TGTGCCTATTAAGCTTTGCCTAC	59.055	43.478	3.20	0.00	0.00	3.18
675	689	3.815962	GCCTATTAAGCTTTGCCTACCTC	59.184	47.826	3.20	0.00	0.00	3.85
680	694	1.789523	AGCTTTGCCTACCTCCGATA	58.210	50.000	0.00	0.00	0.00	2.92
683	697	2.102588	GCTTTGCCTACCTCCGATAAGA	59.897	50.000	0.00	0.00	0.00	2.10
694	708	1.353358	TCCGATAAGAGAGGGGCGATA	59.647	52.381	0.00	0.00	0.00	2.92
697	711	3.952323	CCGATAAGAGAGGGGCGATAATA	59.048	47.826	0.00	0.00	0.00	0.98
701	715	0.173708	GAGAGGGGCGATAATAGCGG	59.826	60.000	0.00	0.00	35.00	5.52
702	716	0.251653	AGAGGGGCGATAATAGCGGA	60.252	55.000	0.00	0.00	35.00	5.54
722	736	4.388499	GCCTTCGGCTCGTCCCAA	62.388	66.667	0.00	0.00	46.69	4.12
725	739	1.079127	CTTCGGCTCGTCCCAATGT	60.079	57.895	0.00	0.00	0.00	2.71
735	749	1.127951	CGTCCCAATGTTTGTAGTCGC	59.872	52.381	0.00	0.00	0.00	5.19
749	763	0.465824	AGTCGCGCTAGGTGGTCTAT	60.466	55.000	5.56	0.00	0.00	1.98
757	771	3.501349	GCTAGGTGGTCTATGGATCTGA	58.499	50.000	0.00	0.00	0.00	3.27
760	774	5.012561	GCTAGGTGGTCTATGGATCTGAATT	59.987	44.000	0.00	0.00	0.00	2.17
798	821	8.086522	TCTTTGTACTACCTTGACAGTTGATAC	58.913	37.037	0.00	0.00	0.00	2.24
805	828	8.982723	ACTACCTTGACAGTTGATACATAGATT	58.017	33.333	0.00	0.00	0.00	2.40
818	841	7.951591	TGATACATAGATTGGAAGTTCATCGA	58.048	34.615	5.01	0.00	0.00	3.59
819	842	8.084684	TGATACATAGATTGGAAGTTCATCGAG	58.915	37.037	5.01	0.00	0.00	4.04
877	1208	5.183904	AGGTTTACGTTATGGTCGTCTAACT	59.816	40.000	0.00	0.00	41.72	2.24
950	1281	4.222588	CAGAGGAGAGAGCCTATTAATGGG	59.777	50.000	13.33	13.33	38.73	4.00
1013	1344	4.394712	CCCGCACCACACCTCCTC	62.395	72.222	0.00	0.00	0.00	3.71
1014	1345	4.394712	CCGCACCACACCTCCTCC	62.395	72.222	0.00	0.00	0.00	4.30
1015	1346	3.314331	CGCACCACACCTCCTCCT	61.314	66.667	0.00	0.00	0.00	3.69
1016	1347	2.883828	CGCACCACACCTCCTCCTT	61.884	63.158	0.00	0.00	0.00	3.36
1017	1348	1.456287	GCACCACACCTCCTCCTTT	59.544	57.895	0.00	0.00	0.00	3.11
1018	1349	0.606673	GCACCACACCTCCTCCTTTC	60.607	60.000	0.00	0.00	0.00	2.62
1217	1554	1.069090	GGCCTTCATCGTCGCCATA	59.931	57.895	0.00	0.00	41.25	2.74
1322	1674	2.122954	AACTCCTCGGGCCTCCTT	59.877	61.111	0.84	0.00	0.00	3.36
1850	3796	2.358898	GCACAGATCGGTGGCAATAATT	59.641	45.455	24.47	0.00	39.19	1.40
1851	3797	3.563808	GCACAGATCGGTGGCAATAATTA	59.436	43.478	24.47	0.00	39.19	1.40
1852	3798	4.216257	GCACAGATCGGTGGCAATAATTAT	59.784	41.667	24.47	0.00	39.19	1.28
2085	4086	4.081309	CGGAGAAAGTACAAATGGGGACTA	60.081	45.833	0.00	0.00	0.00	2.59
2100	4101	3.054361	GGGGACTATGTGTTTGTGATCCT	60.054	47.826	0.00	0.00	0.00	3.24
2377	4379	5.422970	TCGGTATGTAGGTTTACATCAGGTT	59.577	40.000	3.65	0.00	45.19	3.50
2425	4427	7.691463	CGACTTTCTGAAAAGATTGCAGAATAG	59.309	37.037	12.97	13.97	45.06	1.73
2596	4601	3.055094	GGAGAGAAGGAAACATGTGCCTA	60.055	47.826	18.02	0.00	0.00	3.93
2727	4732	5.857822	AACCTTTGTACGAGTATTGCTTC	57.142	39.130	0.00	0.00	0.00	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	1.871039	GCCTGAACTCGTAAACTTGCA	59.129	47.619	0.00	0.00	0.00	4.08
32	33	0.108281	GGGCTGTTACCTCCTTCGAC	60.108	60.000	0.00	0.00	0.00	4.20
36	37	1.192428	CGTAGGGCTGTTACCTCCTT	58.808	55.000	0.00	0.00	39.54	3.36
67	69	2.145397	ATCCAGTCGACAAGCCTCTA	57.855	50.000	19.50	0.00	0.00	2.43
126	130	6.183361	ACTCTATATAAGCTACCCCACTCCTT	60.183	42.308	0.00	0.00	0.00	3.36
131	135	4.380655	CGCACTCTATATAAGCTACCCCAC	60.381	50.000	0.00	0.00	0.00	4.61
132	136	3.762288	CGCACTCTATATAAGCTACCCCA	59.238	47.826	0.00	0.00	0.00	4.96
138	146	2.232452	CCTGGCGCACTCTATATAAGCT	59.768	50.000	10.83	0.00	0.00	3.74
272	281	1.840635	GGCCTACAGTCCCTCAAGATT	59.159	52.381	0.00	0.00	0.00	2.40
276	285	1.203313	AGAAGGCCTACAGTCCCTCAA	60.203	52.381	5.16	0.00	0.00	3.02
279	289	2.683768	CATAGAAGGCCTACAGTCCCT	58.316	52.381	5.16	0.00	0.00	4.20
317	327	4.808895	GCAATCATTACACTCGACCATACA	59.191	41.667	0.00	0.00	0.00	2.29
340	350	2.882927	TATCCCAATTCCACTCGACG	57.117	50.000	0.00	0.00	0.00	5.12
390	400	4.019681	ACCGAATGAAATCACCCTGAACTA	60.020	41.667	0.00	0.00	0.00	2.24
392	402	3.081804	ACCGAATGAAATCACCCTGAAC	58.918	45.455	0.00	0.00	0.00	3.18
408	418	6.750501	CACAAAGTTCTATCGAAGATACCGAA	59.249	38.462	0.00	0.00	45.12	4.30
461	475	4.704965	GGATTGACCTAAACGCCTTATCT	58.295	43.478	0.00	0.00	35.41	1.98
480	494	8.253541	TGTATCTAGGGTAAGGGTATTAGGAT	57.746	38.462	0.00	0.00	0.00	3.24
481	495	7.668131	TGTATCTAGGGTAAGGGTATTAGGA	57.332	40.000	0.00	0.00	0.00	2.94
487	501	6.283948	TGACATGTATCTAGGGTAAGGGTA	57.716	41.667	0.00	0.00	0.00	3.69
489	503	5.105716	CGATGACATGTATCTAGGGTAAGGG	60.106	48.000	0.00	0.00	0.00	3.95
492	506	6.016527	GTGACGATGACATGTATCTAGGGTAA	60.017	42.308	0.00	0.00	0.00	2.85
501	515	2.483714	GGGCAGTGACGATGACATGTAT	60.484	50.000	0.00	0.00	0.00	2.29
580	594	7.041098	GGGGTTGATAGATGTTGTTAGCATAAG	60.041	40.741	0.00	0.00	0.00	1.73
592	606	3.073062	GGCATGTAGGGGTTGATAGATGT	59.927	47.826	0.00	0.00	0.00	3.06
597	611	2.849943	AGTTGGCATGTAGGGGTTGATA	59.150	45.455	0.00	0.00	0.00	2.15
610	624	4.081476	GGGATTAGAAAGCAAAGTTGGCAT	60.081	41.667	4.74	0.00	0.00	4.40
619	633	2.357154	GGCAGGAGGGATTAGAAAGCAA	60.357	50.000	0.00	0.00	0.00	3.91
633	647	2.205074	CACAATACGCTTAGGCAGGAG	58.795	52.381	0.00	0.00	38.60	3.69
638	652	2.234300	TAGGCACAATACGCTTAGGC	57.766	50.000	0.00	0.00	0.00	3.93
647	661	5.200483	AGGCAAAGCTTAATAGGCACAATA	58.800	37.500	0.00	0.00	0.00	1.90
658	672	1.903860	TCGGAGGTAGGCAAAGCTTAA	59.096	47.619	0.00	0.00	0.00	1.85
670	684	1.203025	GCCCCTCTCTTATCGGAGGTA	60.203	57.143	7.99	0.00	45.46	3.08
672	686	1.528292	CGCCCCTCTCTTATCGGAGG	61.528	65.000	0.00	0.00	46.22	4.30
675	689	1.835494	TATCGCCCCTCTCTTATCGG	58.165	55.000	0.00	0.00	0.00	4.18
680	694	1.546476	CGCTATTATCGCCCCTCTCTT	59.454	52.381	0.00	0.00	0.00	2.85
683	697	0.251653	TCCGCTATTATCGCCCCTCT	60.252	55.000	0.00	0.00	0.00	3.69
717	731	1.434555	CGCGACTACAAACATTGGGA	58.565	50.000	0.00	0.00	34.12	4.37
722	736	1.203994	ACCTAGCGCGACTACAAACAT	59.796	47.619	12.10	0.00	0.00	2.71
725	739	0.108992	CCACCTAGCGCGACTACAAA	60.109	55.000	12.10	0.00	0.00	2.83
735	749	2.230025	CAGATCCATAGACCACCTAGCG	59.770	54.545	0.00	0.00	0.00	4.26
784	807	8.722480	TTCCAATCTATGTATCAACTGTCAAG	57.278	34.615	0.00	0.00	0.00	3.02
787	810	8.723942	AACTTCCAATCTATGTATCAACTGTC	57.276	34.615	0.00	0.00	0.00	3.51
788	811	8.321353	TGAACTTCCAATCTATGTATCAACTGT	58.679	33.333	0.00	0.00	0.00	3.55
789	812	8.722480	TGAACTTCCAATCTATGTATCAACTG	57.278	34.615	0.00	0.00	0.00	3.16
798	821	7.708322	TCTTTCTCGATGAACTTCCAATCTATG	59.292	37.037	0.00	0.00	33.88	2.23
805	828	6.935741	TTTTTCTTTCTCGATGAACTTCCA	57.064	33.333	0.00	0.00	33.88	3.53
845	1176	6.806249	CGACCATAACGTAAACCTACACTTTA	59.194	38.462	0.00	0.00	0.00	1.85
877	1208	3.344904	GCGACGTGCCTACTAATTCTA	57.655	47.619	0.00	0.00	37.76	2.10
919	1250	1.688197	GCTCTCTCCTCTGAATCCCAG	59.312	57.143	0.00	0.00	44.27	4.45
1008	1339	2.115427	GAAGGAGGAGGAAAGGAGGAG	58.885	57.143	0.00	0.00	0.00	3.69
1009	1340	1.273896	GGAAGGAGGAGGAAAGGAGGA	60.274	57.143	0.00	0.00	0.00	3.71
1010	1341	1.208706	GGAAGGAGGAGGAAAGGAGG	58.791	60.000	0.00	0.00	0.00	4.30
1011	1342	1.557371	GTGGAAGGAGGAGGAAAGGAG	59.443	57.143	0.00	0.00	0.00	3.69
1012	1343	1.152271	AGTGGAAGGAGGAGGAAAGGA	59.848	52.381	0.00	0.00	0.00	3.36
1013	1344	1.662686	AGTGGAAGGAGGAGGAAAGG	58.337	55.000	0.00	0.00	0.00	3.11
1014	1345	3.055747	GTGTAGTGGAAGGAGGAGGAAAG	60.056	52.174	0.00	0.00	0.00	2.62
1015	1346	2.904434	GTGTAGTGGAAGGAGGAGGAAA	59.096	50.000	0.00	0.00	0.00	3.13
1016	1347	2.537143	GTGTAGTGGAAGGAGGAGGAA	58.463	52.381	0.00	0.00	0.00	3.36
1017	1348	1.273098	GGTGTAGTGGAAGGAGGAGGA	60.273	57.143	0.00	0.00	0.00	3.71
1018	1349	1.196012	GGTGTAGTGGAAGGAGGAGG	58.804	60.000	0.00	0.00	0.00	4.30
1217	1554	3.133003	CCAAGTAGACGATGAGGGTGATT	59.867	47.826	0.00	0.00	0.00	2.57
1322	1674	2.960312	ACCTGGAGGGAGGTGGAA	59.040	61.111	0.00	0.00	45.20	3.53
1475	1827	0.246635	GCACTGGTGACCATACGTCT	59.753	55.000	4.03	0.00	42.49	4.18
1913	3862	2.250031	TGCCCCATGATTATCAATGGC	58.750	47.619	19.37	19.37	38.23	4.40
2085	4086	5.178096	TGGACATAGGATCACAAACACAT	57.822	39.130	0.00	0.00	0.00	3.21
2100	4101	6.488683	CCAACTACCTTTTGTTCTTGGACATA	59.511	38.462	0.00	0.00	35.65	2.29
2377	4379	5.877564	TCGCATGTGTAAATTCAGTTCCATA	59.122	36.000	6.09	0.00	0.00	2.74
2596	4601	3.088194	CTGCATTAATTTGCTGCCGAT	57.912	42.857	3.90	0.00	43.18	4.18
2648	4653	2.848694	TCTCCCATCTTTCTGAAGGCAT	59.151	45.455	0.00	0.00	32.50	4.40
2727	4732	4.272489	TGTGCCCTTCCATTTATCTTCTG	58.728	43.478	0.00	0.00	0.00	3.02
2786	4821	4.723789	AGGAAAGTGGGAGTGATCATACAT	59.276	41.667	0.00	0.00	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.