Multiple sequence alignment - TraesCS5A01G125700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G125700 chr5A 100.000 2618 0 0 1 2618 276334068 276331451 0.000000e+00 4835
1 TraesCS5A01G125700 chr5D 91.157 1832 58 39 1 1771 213272351 213274139 0.000000e+00 2390
2 TraesCS5A01G125700 chr5D 94.643 112 5 1 1926 2036 213274135 213274246 3.460000e-39 172
3 TraesCS5A01G125700 chr5B 84.223 412 25 12 7 388 227496784 227497185 5.320000e-97 364
4 TraesCS5A01G125700 chr5B 93.627 204 4 7 401 603 227497252 227497447 1.970000e-76 296
5 TraesCS5A01G125700 chr6B 78.364 550 102 11 1080 1619 153312109 153312651 8.970000e-90 340
6 TraesCS5A01G125700 chr6A 78.119 553 101 12 1080 1619 96813433 96813978 1.500000e-87 333
7 TraesCS5A01G125700 chr6D 77.577 553 104 12 1080 1619 80112754 80113299 1.510000e-82 316
8 TraesCS5A01G125700 chr7D 90.604 149 14 0 1773 1921 564148782 564148634 5.720000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G125700 chr5A 276331451 276334068 2617 True 4835 4835 100.000 1 2618 1 chr5A.!!$R1 2617
1 TraesCS5A01G125700 chr5D 213272351 213274246 1895 False 1281 2390 92.900 1 2036 2 chr5D.!!$F1 2035
2 TraesCS5A01G125700 chr5B 227496784 227497447 663 False 330 364 88.925 7 603 2 chr5B.!!$F1 596
3 TraesCS5A01G125700 chr6B 153312109 153312651 542 False 340 340 78.364 1080 1619 1 chr6B.!!$F1 539
4 TraesCS5A01G125700 chr6A 96813433 96813978 545 False 333 333 78.119 1080 1619 1 chr6A.!!$F1 539
5 TraesCS5A01G125700 chr6D 80112754 80113299 545 False 316 316 77.577 1080 1619 1 chr6D.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 420 0.439985 CATGTCGTTTGGCTCAGTCG 59.56 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 1963 0.03659 TGTTCTGTATGCAGCAGCCA 59.963 50.0 14.18 10.89 42.29 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 351 9.008965 TGAAAAGGAAAAAGGAAAAGGAAAAAG 57.991 29.630 0.00 0.00 0.00 2.27
317 352 9.226606 GAAAAGGAAAAAGGAAAAGGAAAAAGA 57.773 29.630 0.00 0.00 0.00 2.52
320 355 9.581289 AAGGAAAAAGGAAAAGGAAAAAGAAAA 57.419 25.926 0.00 0.00 0.00 2.29
384 420 0.439985 CATGTCGTTTGGCTCAGTCG 59.560 55.000 0.00 0.00 0.00 4.18
385 421 0.670546 ATGTCGTTTGGCTCAGTCGG 60.671 55.000 0.00 0.00 0.00 4.79
386 422 2.027625 GTCGTTTGGCTCAGTCGGG 61.028 63.158 0.00 0.00 0.00 5.14
387 423 2.742372 CGTTTGGCTCAGTCGGGG 60.742 66.667 0.00 0.00 0.00 5.73
388 424 3.056328 GTTTGGCTCAGTCGGGGC 61.056 66.667 0.00 0.00 0.00 5.80
504 599 2.969628 AGGATCTCATTCTCACCGGAT 58.030 47.619 9.46 0.00 0.00 4.18
505 600 2.896685 AGGATCTCATTCTCACCGGATC 59.103 50.000 9.46 0.00 0.00 3.36
508 603 1.405463 TCTCATTCTCACCGGATCGTG 59.595 52.381 9.46 0.00 34.93 4.35
509 604 1.135139 CTCATTCTCACCGGATCGTGT 59.865 52.381 9.46 0.00 35.18 4.49
510 605 2.357952 CTCATTCTCACCGGATCGTGTA 59.642 50.000 9.46 0.00 35.18 2.90
511 606 2.756207 TCATTCTCACCGGATCGTGTAA 59.244 45.455 9.46 0.00 35.18 2.41
512 607 2.642139 TTCTCACCGGATCGTGTAAC 57.358 50.000 9.46 0.00 35.18 2.50
513 608 0.813184 TCTCACCGGATCGTGTAACC 59.187 55.000 9.46 0.00 35.18 2.85
514 609 0.815734 CTCACCGGATCGTGTAACCT 59.184 55.000 9.46 0.00 35.18 3.50
515 610 2.019249 CTCACCGGATCGTGTAACCTA 58.981 52.381 9.46 0.00 35.18 3.08
516 611 1.745087 TCACCGGATCGTGTAACCTAC 59.255 52.381 9.46 0.00 35.18 3.18
517 612 0.734889 ACCGGATCGTGTAACCTACG 59.265 55.000 9.46 0.00 42.56 3.51
518 613 0.593263 CCGGATCGTGTAACCTACGC 60.593 60.000 0.00 0.00 41.08 4.42
557 653 0.815734 TTCGCTGCTGTAGGTAGACC 59.184 55.000 0.00 0.00 0.00 3.85
698 794 2.665165 ACAAAGACTTGTGGCATCCAA 58.335 42.857 0.00 0.00 44.28 3.53
733 829 1.212195 CCTAGGGTAAAGGGGACAAGC 59.788 57.143 0.00 0.00 0.00 4.01
809 905 3.694566 GACATGTCCTTCCACCCATAAAC 59.305 47.826 15.31 0.00 0.00 2.01
829 925 6.839820 AAACAAACGGACTTCAACTACTAG 57.160 37.500 0.00 0.00 0.00 2.57
833 929 6.264067 ACAAACGGACTTCAACTACTAGTACT 59.736 38.462 0.00 0.00 0.00 2.73
834 930 7.445402 ACAAACGGACTTCAACTACTAGTACTA 59.555 37.037 1.89 1.89 0.00 1.82
835 931 7.608308 AACGGACTTCAACTACTAGTACTAG 57.392 40.000 25.30 25.30 39.04 2.57
868 964 9.722056 GTTAGTCAATGTCAATTGGTGATTATC 57.278 33.333 5.42 2.64 42.97 1.75
972 1086 3.368501 CTCTCCCTCCCCTCCCCA 61.369 72.222 0.00 0.00 0.00 4.96
973 1087 2.628465 TCTCCCTCCCCTCCCCAT 60.628 66.667 0.00 0.00 0.00 4.00
1028 1152 3.429141 CTGCGGCAGCCTCAAGTG 61.429 66.667 18.16 0.00 44.33 3.16
1076 1200 4.951963 CGCCCTCTTCCCGATCGC 62.952 72.222 10.32 0.00 0.00 4.58
1593 1726 2.976356 GGCGTTCTTACCTCCGGT 59.024 61.111 0.00 0.00 40.16 5.28
1696 1829 5.233902 CGGTTTGCATCTTTTTCATGTTTCA 59.766 36.000 0.00 0.00 0.00 2.69
1746 1880 6.748198 TCGGTTTGTGTTTTGTGTAAAGATTC 59.252 34.615 0.00 0.00 0.00 2.52
1771 1905 4.495690 TTATTTGGGATGGTGATCGTCA 57.504 40.909 0.00 0.00 33.11 4.35
1772 1906 2.401583 TTTGGGATGGTGATCGTCAG 57.598 50.000 0.00 0.00 33.11 3.51
1773 1907 1.567357 TTGGGATGGTGATCGTCAGA 58.433 50.000 0.00 0.00 33.11 3.27
1774 1908 1.567357 TGGGATGGTGATCGTCAGAA 58.433 50.000 0.00 0.00 33.11 3.02
1775 1909 1.905894 TGGGATGGTGATCGTCAGAAA 59.094 47.619 0.00 0.00 33.11 2.52
1776 1910 2.505407 TGGGATGGTGATCGTCAGAAAT 59.495 45.455 0.00 0.00 33.11 2.17
1777 1911 3.054434 TGGGATGGTGATCGTCAGAAATT 60.054 43.478 0.00 0.00 33.11 1.82
1778 1912 3.561725 GGGATGGTGATCGTCAGAAATTC 59.438 47.826 0.00 0.00 33.11 2.17
1779 1913 3.561725 GGATGGTGATCGTCAGAAATTCC 59.438 47.826 0.00 0.00 33.11 3.01
1780 1914 3.981071 TGGTGATCGTCAGAAATTCCT 57.019 42.857 0.00 0.00 0.00 3.36
1781 1915 3.599343 TGGTGATCGTCAGAAATTCCTG 58.401 45.455 0.00 0.00 35.55 3.86
1782 1916 3.007940 TGGTGATCGTCAGAAATTCCTGT 59.992 43.478 0.00 0.00 35.71 4.00
1783 1917 3.372206 GGTGATCGTCAGAAATTCCTGTG 59.628 47.826 0.00 0.00 35.71 3.66
1784 1918 3.002791 TGATCGTCAGAAATTCCTGTGC 58.997 45.455 0.00 0.00 35.71 4.57
1785 1919 2.542020 TCGTCAGAAATTCCTGTGCA 57.458 45.000 0.00 0.00 35.71 4.57
1786 1920 2.143122 TCGTCAGAAATTCCTGTGCAC 58.857 47.619 10.75 10.75 35.71 4.57
1787 1921 1.872952 CGTCAGAAATTCCTGTGCACA 59.127 47.619 20.37 20.37 35.71 4.57
1788 1922 2.349817 CGTCAGAAATTCCTGTGCACAC 60.350 50.000 17.42 4.13 35.71 3.82
1789 1923 1.872952 TCAGAAATTCCTGTGCACACG 59.127 47.619 17.42 12.82 35.71 4.49
1790 1924 1.872952 CAGAAATTCCTGTGCACACGA 59.127 47.619 17.42 15.24 0.00 4.35
1791 1925 2.485426 CAGAAATTCCTGTGCACACGAT 59.515 45.455 17.42 7.22 0.00 3.73
1792 1926 3.058016 CAGAAATTCCTGTGCACACGATT 60.058 43.478 17.42 12.92 0.00 3.34
1793 1927 2.995466 AATTCCTGTGCACACGATTG 57.005 45.000 17.42 5.67 0.00 2.67
1794 1928 1.896220 ATTCCTGTGCACACGATTGT 58.104 45.000 17.42 4.46 35.84 2.71
1795 1929 1.674359 TTCCTGTGCACACGATTGTT 58.326 45.000 17.42 0.00 31.66 2.83
1796 1930 1.674359 TCCTGTGCACACGATTGTTT 58.326 45.000 17.42 0.00 31.66 2.83
1797 1931 1.333308 TCCTGTGCACACGATTGTTTG 59.667 47.619 17.42 2.40 31.66 2.93
1798 1932 1.333308 CCTGTGCACACGATTGTTTGA 59.667 47.619 17.42 0.00 31.66 2.69
1799 1933 2.375110 CTGTGCACACGATTGTTTGAC 58.625 47.619 17.42 0.35 31.66 3.18
1800 1934 1.740025 TGTGCACACGATTGTTTGACA 59.260 42.857 17.42 2.71 31.66 3.58
1801 1935 2.223226 TGTGCACACGATTGTTTGACAG 60.223 45.455 17.42 0.00 31.66 3.51
1802 1936 2.031560 GTGCACACGATTGTTTGACAGA 59.968 45.455 13.17 0.00 31.66 3.41
1803 1937 2.877786 TGCACACGATTGTTTGACAGAT 59.122 40.909 3.29 0.00 31.66 2.90
1804 1938 3.228749 GCACACGATTGTTTGACAGATG 58.771 45.455 3.29 0.00 31.66 2.90
1805 1939 3.058983 GCACACGATTGTTTGACAGATGA 60.059 43.478 3.29 0.00 31.66 2.92
1806 1940 4.378770 GCACACGATTGTTTGACAGATGAT 60.379 41.667 3.29 0.00 31.66 2.45
1807 1941 5.692814 CACACGATTGTTTGACAGATGATT 58.307 37.500 0.00 0.00 31.66 2.57
1808 1942 6.144854 CACACGATTGTTTGACAGATGATTT 58.855 36.000 0.00 0.00 31.66 2.17
1809 1943 6.638063 CACACGATTGTTTGACAGATGATTTT 59.362 34.615 0.00 0.00 31.66 1.82
1810 1944 7.167968 CACACGATTGTTTGACAGATGATTTTT 59.832 33.333 0.00 0.00 31.66 1.94
1811 1945 7.167968 ACACGATTGTTTGACAGATGATTTTTG 59.832 33.333 0.00 0.00 28.43 2.44
1812 1946 6.642131 ACGATTGTTTGACAGATGATTTTTGG 59.358 34.615 0.00 0.00 0.00 3.28
1813 1947 6.862608 CGATTGTTTGACAGATGATTTTTGGA 59.137 34.615 0.00 0.00 0.00 3.53
1814 1948 7.148918 CGATTGTTTGACAGATGATTTTTGGAC 60.149 37.037 0.00 0.00 0.00 4.02
1815 1949 5.518812 TGTTTGACAGATGATTTTTGGACG 58.481 37.500 0.00 0.00 0.00 4.79
1816 1950 5.298026 TGTTTGACAGATGATTTTTGGACGA 59.702 36.000 0.00 0.00 0.00 4.20
1817 1951 6.016360 TGTTTGACAGATGATTTTTGGACGAT 60.016 34.615 0.00 0.00 0.00 3.73
1818 1952 5.550232 TGACAGATGATTTTTGGACGATG 57.450 39.130 0.00 0.00 0.00 3.84
1819 1953 4.142622 TGACAGATGATTTTTGGACGATGC 60.143 41.667 0.00 0.00 0.00 3.91
1820 1954 4.012374 ACAGATGATTTTTGGACGATGCT 58.988 39.130 0.00 0.00 0.00 3.79
1821 1955 4.460382 ACAGATGATTTTTGGACGATGCTT 59.540 37.500 0.00 0.00 0.00 3.91
1822 1956 4.796830 CAGATGATTTTTGGACGATGCTTG 59.203 41.667 0.00 0.00 0.00 4.01
1823 1957 3.574284 TGATTTTTGGACGATGCTTGG 57.426 42.857 0.00 0.00 0.00 3.61
1824 1958 3.153130 TGATTTTTGGACGATGCTTGGA 58.847 40.909 0.00 0.00 0.00 3.53
1825 1959 3.763360 TGATTTTTGGACGATGCTTGGAT 59.237 39.130 0.00 0.00 0.00 3.41
1826 1960 3.848272 TTTTTGGACGATGCTTGGATC 57.152 42.857 0.00 0.00 0.00 3.36
1828 1962 0.534873 TTGGACGATGCTTGGATCGA 59.465 50.000 26.26 6.01 46.72 3.59
1829 1963 0.752658 TGGACGATGCTTGGATCGAT 59.247 50.000 26.26 13.34 46.72 3.59
1830 1964 1.143305 GGACGATGCTTGGATCGATG 58.857 55.000 26.26 3.33 46.72 3.84
1831 1965 1.143305 GACGATGCTTGGATCGATGG 58.857 55.000 26.26 3.01 46.72 3.51
1832 1966 0.882042 ACGATGCTTGGATCGATGGC 60.882 55.000 26.26 2.41 46.72 4.40
1833 1967 0.602106 CGATGCTTGGATCGATGGCT 60.602 55.000 17.36 0.00 46.72 4.75
1834 1968 0.873054 GATGCTTGGATCGATGGCTG 59.127 55.000 0.54 0.00 0.00 4.85
1835 1969 1.170919 ATGCTTGGATCGATGGCTGC 61.171 55.000 0.54 2.78 0.00 5.25
1836 1970 1.525535 GCTTGGATCGATGGCTGCT 60.526 57.895 0.54 0.00 0.00 4.24
1837 1971 1.783031 GCTTGGATCGATGGCTGCTG 61.783 60.000 0.54 0.00 0.00 4.41
1838 1972 1.783031 CTTGGATCGATGGCTGCTGC 61.783 60.000 0.54 7.10 38.76 5.25
1839 1973 2.203112 GGATCGATGGCTGCTGCA 60.203 61.111 17.89 0.88 41.91 4.41
1840 1974 1.600076 GGATCGATGGCTGCTGCAT 60.600 57.895 17.89 8.83 41.91 3.96
1841 1975 0.321034 GGATCGATGGCTGCTGCATA 60.321 55.000 17.89 6.08 41.91 3.14
1842 1976 0.795085 GATCGATGGCTGCTGCATAC 59.205 55.000 17.89 0.00 41.91 2.39
1843 1977 0.107268 ATCGATGGCTGCTGCATACA 59.893 50.000 17.89 5.79 41.91 2.29
1860 1994 7.229228 TGCATACAGAACATACGTGATAAAC 57.771 36.000 0.00 0.00 0.00 2.01
1871 2005 3.901667 CGTGATAAACGCCTGTAGTTC 57.098 47.619 0.00 0.00 46.99 3.01
1872 2006 3.508762 CGTGATAAACGCCTGTAGTTCT 58.491 45.455 0.00 0.00 46.99 3.01
1873 2007 3.546670 CGTGATAAACGCCTGTAGTTCTC 59.453 47.826 0.00 0.00 46.99 2.87
1874 2008 4.674623 CGTGATAAACGCCTGTAGTTCTCT 60.675 45.833 0.00 0.00 46.99 3.10
1875 2009 4.563184 GTGATAAACGCCTGTAGTTCTCTG 59.437 45.833 0.00 0.00 0.00 3.35
1876 2010 4.219944 TGATAAACGCCTGTAGTTCTCTGT 59.780 41.667 0.00 0.00 0.00 3.41
1877 2011 2.726832 AACGCCTGTAGTTCTCTGTC 57.273 50.000 0.00 0.00 0.00 3.51
1878 2012 0.889306 ACGCCTGTAGTTCTCTGTCC 59.111 55.000 0.00 0.00 0.00 4.02
1879 2013 1.178276 CGCCTGTAGTTCTCTGTCCT 58.822 55.000 0.00 0.00 0.00 3.85
1880 2014 1.133407 CGCCTGTAGTTCTCTGTCCTC 59.867 57.143 0.00 0.00 0.00 3.71
1881 2015 2.452505 GCCTGTAGTTCTCTGTCCTCT 58.547 52.381 0.00 0.00 0.00 3.69
1882 2016 2.425668 GCCTGTAGTTCTCTGTCCTCTC 59.574 54.545 0.00 0.00 0.00 3.20
1883 2017 3.691575 CCTGTAGTTCTCTGTCCTCTCA 58.308 50.000 0.00 0.00 0.00 3.27
1884 2018 4.082845 CCTGTAGTTCTCTGTCCTCTCAA 58.917 47.826 0.00 0.00 0.00 3.02
1885 2019 4.524714 CCTGTAGTTCTCTGTCCTCTCAAA 59.475 45.833 0.00 0.00 0.00 2.69
1886 2020 5.011125 CCTGTAGTTCTCTGTCCTCTCAAAA 59.989 44.000 0.00 0.00 0.00 2.44
1887 2021 6.295575 CCTGTAGTTCTCTGTCCTCTCAAAAT 60.296 42.308 0.00 0.00 0.00 1.82
1888 2022 6.692486 TGTAGTTCTCTGTCCTCTCAAAATC 58.308 40.000 0.00 0.00 0.00 2.17
1889 2023 4.815269 AGTTCTCTGTCCTCTCAAAATCG 58.185 43.478 0.00 0.00 0.00 3.34
1890 2024 4.282195 AGTTCTCTGTCCTCTCAAAATCGT 59.718 41.667 0.00 0.00 0.00 3.73
1891 2025 4.179926 TCTCTGTCCTCTCAAAATCGTG 57.820 45.455 0.00 0.00 0.00 4.35
1892 2026 2.670414 CTCTGTCCTCTCAAAATCGTGC 59.330 50.000 0.00 0.00 0.00 5.34
1893 2027 2.037121 TCTGTCCTCTCAAAATCGTGCA 59.963 45.455 0.00 0.00 0.00 4.57
1894 2028 2.143122 TGTCCTCTCAAAATCGTGCAC 58.857 47.619 6.82 6.82 0.00 4.57
1895 2029 2.143122 GTCCTCTCAAAATCGTGCACA 58.857 47.619 18.64 4.45 0.00 4.57
1896 2030 2.548057 GTCCTCTCAAAATCGTGCACAA 59.452 45.455 18.64 0.00 0.00 3.33
1897 2031 3.003275 GTCCTCTCAAAATCGTGCACAAA 59.997 43.478 18.64 4.30 0.00 2.83
1898 2032 3.003275 TCCTCTCAAAATCGTGCACAAAC 59.997 43.478 18.64 0.00 0.00 2.93
1899 2033 2.966708 CTCTCAAAATCGTGCACAAACG 59.033 45.455 18.64 2.38 44.92 3.60
1904 2038 4.329619 TCGTGCACAAACGATCGT 57.670 50.000 16.60 16.60 46.99 3.73
1905 2039 2.138355 TCGTGCACAAACGATCGTC 58.862 52.632 22.98 9.16 46.99 4.20
1906 2040 1.129809 CGTGCACAAACGATCGTCC 59.870 57.895 22.98 8.36 46.49 4.79
1907 2041 1.129809 GTGCACAAACGATCGTCCG 59.870 57.895 22.98 17.49 0.00 4.79
1908 2042 1.300311 TGCACAAACGATCGTCCGT 60.300 52.632 22.98 18.17 45.64 4.69
1909 2043 1.129809 GCACAAACGATCGTCCGTG 59.870 57.895 30.74 30.74 42.54 4.94
1910 2044 1.554042 GCACAAACGATCGTCCGTGT 61.554 55.000 32.80 27.10 42.54 4.49
1911 2045 1.688793 CACAAACGATCGTCCGTGTA 58.311 50.000 28.50 0.00 42.54 2.90
1912 2046 1.384409 CACAAACGATCGTCCGTGTAC 59.616 52.381 28.50 0.00 42.54 2.90
1913 2047 0.986992 CAAACGATCGTCCGTGTACC 59.013 55.000 22.98 0.00 42.54 3.34
1914 2048 0.597568 AAACGATCGTCCGTGTACCA 59.402 50.000 22.98 0.00 42.54 3.25
1915 2049 0.169672 AACGATCGTCCGTGTACCAG 59.830 55.000 22.98 0.00 42.54 4.00
1916 2050 1.585521 CGATCGTCCGTGTACCAGC 60.586 63.158 7.03 0.00 0.00 4.85
1917 2051 1.585521 GATCGTCCGTGTACCAGCG 60.586 63.158 0.00 0.00 0.00 5.18
1918 2052 3.695022 ATCGTCCGTGTACCAGCGC 62.695 63.158 0.00 0.00 0.00 5.92
1919 2053 4.415332 CGTCCGTGTACCAGCGCT 62.415 66.667 2.64 2.64 0.00 5.92
1920 2054 2.506438 GTCCGTGTACCAGCGCTC 60.506 66.667 7.13 0.00 0.00 5.03
1921 2055 4.111016 TCCGTGTACCAGCGCTCG 62.111 66.667 7.13 2.49 0.00 5.03
1924 2058 3.181967 GTGTACCAGCGCTCGCAG 61.182 66.667 7.13 8.37 44.88 5.18
1925 2059 3.680786 TGTACCAGCGCTCGCAGT 61.681 61.111 7.13 14.67 44.88 4.40
1926 2060 2.881352 GTACCAGCGCTCGCAGTC 60.881 66.667 7.13 4.63 44.88 3.51
1927 2061 4.476410 TACCAGCGCTCGCAGTCG 62.476 66.667 7.13 0.00 44.88 4.18
2015 2149 5.067153 GTGTGGCAATGGTATAAACATGCTA 59.933 40.000 0.00 0.00 33.93 3.49
2021 2155 7.305474 GCAATGGTATAAACATGCTACATACC 58.695 38.462 14.80 14.80 40.93 2.73
2024 2158 6.530120 TGGTATAAACATGCTACATACCCAG 58.470 40.000 17.24 0.00 40.18 4.45
2026 2160 2.348411 AACATGCTACATACCCAGGC 57.652 50.000 0.00 0.00 0.00 4.85
2036 2170 1.120530 ATACCCAGGCTGTAAGGTCG 58.879 55.000 15.89 0.00 33.70 4.79
2037 2171 0.040058 TACCCAGGCTGTAAGGTCGA 59.960 55.000 15.89 0.00 33.70 4.20
2038 2172 0.617820 ACCCAGGCTGTAAGGTCGAT 60.618 55.000 14.43 0.00 0.00 3.59
2039 2173 0.179073 CCCAGGCTGTAAGGTCGATG 60.179 60.000 14.43 0.00 0.00 3.84
2040 2174 0.537188 CCAGGCTGTAAGGTCGATGT 59.463 55.000 14.43 0.00 0.00 3.06
2041 2175 1.754803 CCAGGCTGTAAGGTCGATGTA 59.245 52.381 14.43 0.00 0.00 2.29
2042 2176 2.223829 CCAGGCTGTAAGGTCGATGTAG 60.224 54.545 14.43 0.00 0.00 2.74
2043 2177 1.409427 AGGCTGTAAGGTCGATGTAGC 59.591 52.381 0.00 0.00 0.00 3.58
2044 2178 1.409427 GGCTGTAAGGTCGATGTAGCT 59.591 52.381 0.00 0.00 0.00 3.32
2045 2179 2.544069 GGCTGTAAGGTCGATGTAGCTC 60.544 54.545 0.00 0.00 0.00 4.09
2046 2180 2.544069 GCTGTAAGGTCGATGTAGCTCC 60.544 54.545 0.00 0.00 0.00 4.70
2047 2181 2.029623 TGTAAGGTCGATGTAGCTCCC 58.970 52.381 0.00 0.00 0.00 4.30
2048 2182 2.308690 GTAAGGTCGATGTAGCTCCCT 58.691 52.381 0.00 0.00 0.00 4.20
2049 2183 2.750141 AAGGTCGATGTAGCTCCCTA 57.250 50.000 0.00 0.00 0.00 3.53
2050 2184 1.984066 AGGTCGATGTAGCTCCCTAC 58.016 55.000 0.00 0.00 43.43 3.18
2051 2185 0.960286 GGTCGATGTAGCTCCCTACC 59.040 60.000 0.00 0.00 42.66 3.18
2052 2186 0.592148 GTCGATGTAGCTCCCTACCG 59.408 60.000 0.00 0.00 42.66 4.02
2053 2187 0.536687 TCGATGTAGCTCCCTACCGG 60.537 60.000 0.00 0.00 42.66 5.28
2054 2188 0.822532 CGATGTAGCTCCCTACCGGT 60.823 60.000 13.98 13.98 42.66 5.28
2055 2189 1.411041 GATGTAGCTCCCTACCGGTT 58.589 55.000 15.04 0.00 42.66 4.44
2056 2190 1.340568 GATGTAGCTCCCTACCGGTTC 59.659 57.143 15.04 0.00 42.66 3.62
2057 2191 0.685458 TGTAGCTCCCTACCGGTTCC 60.685 60.000 15.04 0.00 42.66 3.62
2058 2192 1.075748 TAGCTCCCTACCGGTTCCC 60.076 63.158 15.04 0.00 0.00 3.97
2059 2193 1.877672 TAGCTCCCTACCGGTTCCCA 61.878 60.000 15.04 0.00 0.00 4.37
2060 2194 3.027675 GCTCCCTACCGGTTCCCAC 62.028 68.421 15.04 0.00 0.00 4.61
2061 2195 1.611261 CTCCCTACCGGTTCCCACA 60.611 63.158 15.04 0.00 0.00 4.17
2062 2196 1.896122 CTCCCTACCGGTTCCCACAC 61.896 65.000 15.04 0.00 0.00 3.82
2063 2197 2.218454 CCCTACCGGTTCCCACACA 61.218 63.158 15.04 0.00 0.00 3.72
2064 2198 1.559065 CCCTACCGGTTCCCACACAT 61.559 60.000 15.04 0.00 0.00 3.21
2065 2199 0.392461 CCTACCGGTTCCCACACATG 60.392 60.000 15.04 0.00 0.00 3.21
2066 2200 0.323629 CTACCGGTTCCCACACATGT 59.676 55.000 15.04 0.00 0.00 3.21
2067 2201 0.035598 TACCGGTTCCCACACATGTG 59.964 55.000 24.25 24.25 45.23 3.21
2078 2212 2.727123 ACACATGTGACAAACTCCCA 57.273 45.000 31.94 0.00 0.00 4.37
2079 2213 3.011566 ACACATGTGACAAACTCCCAA 57.988 42.857 31.94 0.00 0.00 4.12
2080 2214 3.360867 ACACATGTGACAAACTCCCAAA 58.639 40.909 31.94 0.00 0.00 3.28
2081 2215 3.381272 ACACATGTGACAAACTCCCAAAG 59.619 43.478 31.94 0.00 0.00 2.77
2082 2216 2.362077 ACATGTGACAAACTCCCAAAGC 59.638 45.455 0.00 0.00 0.00 3.51
2083 2217 1.398692 TGTGACAAACTCCCAAAGCC 58.601 50.000 0.00 0.00 0.00 4.35
2084 2218 0.673985 GTGACAAACTCCCAAAGCCC 59.326 55.000 0.00 0.00 0.00 5.19
2085 2219 0.555769 TGACAAACTCCCAAAGCCCT 59.444 50.000 0.00 0.00 0.00 5.19
2086 2220 1.777878 TGACAAACTCCCAAAGCCCTA 59.222 47.619 0.00 0.00 0.00 3.53
2087 2221 2.224769 TGACAAACTCCCAAAGCCCTAG 60.225 50.000 0.00 0.00 0.00 3.02
2088 2222 2.039879 GACAAACTCCCAAAGCCCTAGA 59.960 50.000 0.00 0.00 0.00 2.43
2089 2223 2.649816 ACAAACTCCCAAAGCCCTAGAT 59.350 45.455 0.00 0.00 0.00 1.98
2090 2224 3.076032 ACAAACTCCCAAAGCCCTAGATT 59.924 43.478 0.00 0.00 0.00 2.40
2091 2225 3.653835 AACTCCCAAAGCCCTAGATTC 57.346 47.619 0.00 0.00 0.00 2.52
2092 2226 1.486726 ACTCCCAAAGCCCTAGATTCG 59.513 52.381 0.00 0.00 0.00 3.34
2093 2227 0.180406 TCCCAAAGCCCTAGATTCGC 59.820 55.000 0.00 0.00 0.00 4.70
2094 2228 0.819666 CCCAAAGCCCTAGATTCGCC 60.820 60.000 0.00 0.00 0.00 5.54
2095 2229 0.107214 CCAAAGCCCTAGATTCGCCA 60.107 55.000 0.00 0.00 0.00 5.69
2096 2230 1.477558 CCAAAGCCCTAGATTCGCCAT 60.478 52.381 0.00 0.00 0.00 4.40
2097 2231 1.605710 CAAAGCCCTAGATTCGCCATG 59.394 52.381 0.00 0.00 0.00 3.66
2098 2232 0.109342 AAGCCCTAGATTCGCCATGG 59.891 55.000 7.63 7.63 0.00 3.66
2099 2233 0.764369 AGCCCTAGATTCGCCATGGA 60.764 55.000 18.40 0.00 0.00 3.41
2100 2234 0.108585 GCCCTAGATTCGCCATGGAA 59.891 55.000 18.40 1.20 0.00 3.53
2101 2235 1.271597 GCCCTAGATTCGCCATGGAAT 60.272 52.381 18.40 7.22 39.27 3.01
2102 2236 2.815589 GCCCTAGATTCGCCATGGAATT 60.816 50.000 18.40 0.00 36.79 2.17
2103 2237 3.077359 CCCTAGATTCGCCATGGAATTC 58.923 50.000 18.40 8.50 36.79 2.17
2104 2238 2.738846 CCTAGATTCGCCATGGAATTCG 59.261 50.000 18.40 9.78 36.79 3.34
2105 2239 0.947244 AGATTCGCCATGGAATTCGC 59.053 50.000 18.40 0.00 36.79 4.70
2106 2240 0.662619 GATTCGCCATGGAATTCGCA 59.337 50.000 18.40 0.00 36.79 5.10
2107 2241 1.267806 GATTCGCCATGGAATTCGCAT 59.732 47.619 18.40 5.01 36.79 4.73
2108 2242 0.662619 TTCGCCATGGAATTCGCATC 59.337 50.000 18.40 0.00 0.00 3.91
2109 2243 1.082561 CGCCATGGAATTCGCATCG 60.083 57.895 18.40 1.52 0.00 3.84
2110 2244 1.498043 CGCCATGGAATTCGCATCGA 61.498 55.000 18.40 0.00 0.00 3.59
2120 2254 2.536619 CGCATCGAAGATCGCGTG 59.463 61.111 5.77 0.00 45.12 5.34
2121 2255 2.243810 GCATCGAAGATCGCGTGC 59.756 61.111 5.77 1.39 45.12 5.34
2122 2256 2.233654 GCATCGAAGATCGCGTGCT 61.234 57.895 5.77 1.13 45.12 4.40
2123 2257 1.842686 CATCGAAGATCGCGTGCTC 59.157 57.895 5.77 1.68 45.12 4.26
2124 2258 1.299468 ATCGAAGATCGCGTGCTCC 60.299 57.895 5.77 0.00 45.12 4.70
2125 2259 1.729470 ATCGAAGATCGCGTGCTCCT 61.729 55.000 5.77 0.00 45.12 3.69
2126 2260 1.941734 CGAAGATCGCGTGCTCCTC 60.942 63.158 5.77 0.49 31.14 3.71
2127 2261 1.590259 GAAGATCGCGTGCTCCTCC 60.590 63.158 5.77 0.00 0.00 4.30
2128 2262 2.962697 GAAGATCGCGTGCTCCTCCC 62.963 65.000 5.77 0.00 0.00 4.30
2129 2263 4.593864 GATCGCGTGCTCCTCCCC 62.594 72.222 5.77 0.00 0.00 4.81
2134 2268 4.227134 CGTGCTCCTCCCCCGATG 62.227 72.222 0.00 0.00 0.00 3.84
2135 2269 4.554036 GTGCTCCTCCCCCGATGC 62.554 72.222 0.00 0.00 0.00 3.91
2138 2272 3.089874 CTCCTCCCCCGATGCCAA 61.090 66.667 0.00 0.00 0.00 4.52
2139 2273 2.368192 TCCTCCCCCGATGCCAAT 60.368 61.111 0.00 0.00 0.00 3.16
2140 2274 2.203394 CCTCCCCCGATGCCAATG 60.203 66.667 0.00 0.00 0.00 2.82
2141 2275 2.597340 CTCCCCCGATGCCAATGT 59.403 61.111 0.00 0.00 0.00 2.71
2142 2276 1.526917 CTCCCCCGATGCCAATGTC 60.527 63.158 0.00 0.00 0.00 3.06
2143 2277 2.519302 CCCCCGATGCCAATGTCC 60.519 66.667 0.00 0.00 0.00 4.02
2144 2278 2.519302 CCCCGATGCCAATGTCCC 60.519 66.667 0.00 0.00 0.00 4.46
2145 2279 2.275089 CCCGATGCCAATGTCCCA 59.725 61.111 0.00 0.00 0.00 4.37
2146 2280 1.825191 CCCGATGCCAATGTCCCAG 60.825 63.158 0.00 0.00 0.00 4.45
2147 2281 2.484062 CCGATGCCAATGTCCCAGC 61.484 63.158 0.00 0.00 0.00 4.85
2148 2282 2.827051 CGATGCCAATGTCCCAGCG 61.827 63.158 0.00 0.00 32.01 5.18
2149 2283 1.451927 GATGCCAATGTCCCAGCGA 60.452 57.895 0.00 0.00 0.00 4.93
2150 2284 0.820891 GATGCCAATGTCCCAGCGAT 60.821 55.000 0.00 0.00 0.00 4.58
2151 2285 0.820891 ATGCCAATGTCCCAGCGATC 60.821 55.000 0.00 0.00 0.00 3.69
2152 2286 1.153086 GCCAATGTCCCAGCGATCT 60.153 57.895 0.00 0.00 0.00 2.75
2153 2287 1.162800 GCCAATGTCCCAGCGATCTC 61.163 60.000 0.00 0.00 0.00 2.75
2154 2288 0.467384 CCAATGTCCCAGCGATCTCT 59.533 55.000 0.00 0.00 0.00 3.10
2155 2289 1.579698 CAATGTCCCAGCGATCTCTG 58.420 55.000 5.69 5.69 0.00 3.35
2156 2290 1.137675 CAATGTCCCAGCGATCTCTGA 59.862 52.381 14.33 0.00 36.19 3.27
2157 2291 0.749649 ATGTCCCAGCGATCTCTGAC 59.250 55.000 14.33 5.99 36.19 3.51
2158 2292 1.064946 GTCCCAGCGATCTCTGACG 59.935 63.158 14.33 4.10 36.19 4.35
2159 2293 1.077716 TCCCAGCGATCTCTGACGA 60.078 57.895 14.33 6.35 36.19 4.20
2160 2294 1.064946 CCCAGCGATCTCTGACGAC 59.935 63.158 14.33 0.00 36.19 4.34
2161 2295 1.380403 CCCAGCGATCTCTGACGACT 61.380 60.000 14.33 0.00 36.19 4.18
2162 2296 1.300481 CCAGCGATCTCTGACGACTA 58.700 55.000 14.33 0.00 36.19 2.59
2163 2297 1.003331 CCAGCGATCTCTGACGACTAC 60.003 57.143 14.33 0.00 36.19 2.73
2164 2298 0.931702 AGCGATCTCTGACGACTACG 59.068 55.000 0.00 0.00 45.75 3.51
2165 2299 0.928922 GCGATCTCTGACGACTACGA 59.071 55.000 0.00 0.00 42.66 3.43
2166 2300 1.332202 GCGATCTCTGACGACTACGAC 60.332 57.143 0.00 0.00 42.66 4.34
2167 2301 1.072024 CGATCTCTGACGACTACGACG 60.072 57.143 0.00 0.00 42.66 5.12
2168 2302 2.191802 GATCTCTGACGACTACGACGA 58.808 52.381 0.00 0.00 42.66 4.20
2169 2303 1.344458 TCTCTGACGACTACGACGAC 58.656 55.000 0.00 0.00 42.66 4.34
2170 2304 1.066136 CTCTGACGACTACGACGACA 58.934 55.000 0.00 0.00 42.66 4.35
2171 2305 1.659601 CTCTGACGACTACGACGACAT 59.340 52.381 0.00 0.00 42.66 3.06
2172 2306 1.392510 TCTGACGACTACGACGACATG 59.607 52.381 0.00 0.00 42.66 3.21
2173 2307 0.445043 TGACGACTACGACGACATGG 59.555 55.000 0.00 0.00 42.66 3.66
2174 2308 0.723414 GACGACTACGACGACATGGA 59.277 55.000 0.00 0.00 42.66 3.41
2175 2309 0.445436 ACGACTACGACGACATGGAC 59.555 55.000 0.00 0.00 42.66 4.02
2176 2310 0.725686 CGACTACGACGACATGGACT 59.274 55.000 0.00 0.00 42.66 3.85
2177 2311 1.929169 CGACTACGACGACATGGACTA 59.071 52.381 0.00 0.00 42.66 2.59
2178 2312 2.543012 CGACTACGACGACATGGACTAT 59.457 50.000 0.00 0.00 42.66 2.12
2179 2313 3.604085 CGACTACGACGACATGGACTATG 60.604 52.174 0.00 0.00 42.66 2.23
2180 2314 3.538591 ACTACGACGACATGGACTATGA 58.461 45.455 5.72 0.00 39.21 2.15
2181 2315 3.560481 ACTACGACGACATGGACTATGAG 59.440 47.826 5.72 2.10 39.21 2.90
2182 2316 1.676529 ACGACGACATGGACTATGAGG 59.323 52.381 5.72 0.00 39.21 3.86
2183 2317 1.676529 CGACGACATGGACTATGAGGT 59.323 52.381 5.72 2.80 39.21 3.85
2184 2318 2.099263 CGACGACATGGACTATGAGGTT 59.901 50.000 5.72 0.00 39.21 3.50
2185 2319 3.448686 GACGACATGGACTATGAGGTTG 58.551 50.000 5.72 0.00 39.21 3.77
2186 2320 2.832129 ACGACATGGACTATGAGGTTGT 59.168 45.455 5.72 0.00 39.21 3.32
2187 2321 3.119101 ACGACATGGACTATGAGGTTGTC 60.119 47.826 5.72 0.00 39.21 3.18
2188 2322 3.119137 CGACATGGACTATGAGGTTGTCA 60.119 47.826 5.72 0.00 39.21 3.58
2189 2323 4.184629 GACATGGACTATGAGGTTGTCAC 58.815 47.826 5.72 0.00 38.28 3.67
2190 2324 3.055094 ACATGGACTATGAGGTTGTCACC 60.055 47.826 5.72 0.00 40.73 4.02
2191 2325 6.422502 ACATGGACTATGAGGTTGTCACCG 62.423 50.000 5.72 0.00 43.08 4.94
2203 2337 1.423056 GTCACCGGACGACTACTCG 59.577 63.158 9.46 0.00 46.06 4.18
2204 2338 1.016130 GTCACCGGACGACTACTCGA 61.016 60.000 9.46 0.00 43.06 4.04
2205 2339 0.320683 TCACCGGACGACTACTCGAA 60.321 55.000 9.46 0.00 43.06 3.71
2206 2340 0.518636 CACCGGACGACTACTCGAAA 59.481 55.000 9.46 0.00 43.06 3.46
2207 2341 1.131883 CACCGGACGACTACTCGAAAT 59.868 52.381 9.46 0.00 43.06 2.17
2208 2342 1.131883 ACCGGACGACTACTCGAAATG 59.868 52.381 9.46 0.00 43.06 2.32
2209 2343 1.399440 CCGGACGACTACTCGAAATGA 59.601 52.381 0.00 0.00 43.06 2.57
2222 2356 3.531538 TCGAAATGAGTGGACCATTAGC 58.468 45.455 0.00 0.00 33.51 3.09
2223 2357 3.197766 TCGAAATGAGTGGACCATTAGCT 59.802 43.478 0.00 0.00 33.51 3.32
2224 2358 3.557595 CGAAATGAGTGGACCATTAGCTC 59.442 47.826 0.00 0.00 33.51 4.09
2225 2359 4.681781 CGAAATGAGTGGACCATTAGCTCT 60.682 45.833 0.00 0.00 33.51 4.09
2226 2360 4.414337 AATGAGTGGACCATTAGCTCTC 57.586 45.455 0.00 0.00 32.94 3.20
2227 2361 3.107402 TGAGTGGACCATTAGCTCTCT 57.893 47.619 0.00 0.00 0.00 3.10
2228 2362 2.762887 TGAGTGGACCATTAGCTCTCTG 59.237 50.000 0.00 0.00 0.00 3.35
2229 2363 1.484240 AGTGGACCATTAGCTCTCTGC 59.516 52.381 0.00 0.00 43.29 4.26
2259 2393 4.070552 GCAGGCGACTCTCGGGTT 62.071 66.667 0.00 0.00 40.84 4.11
2260 2394 2.657237 CAGGCGACTCTCGGGTTT 59.343 61.111 0.00 0.00 40.84 3.27
2261 2395 1.446272 CAGGCGACTCTCGGGTTTC 60.446 63.158 0.00 0.00 40.84 2.78
2262 2396 2.506438 GGCGACTCTCGGGTTTCG 60.506 66.667 4.24 4.24 40.84 3.46
2264 2398 2.506438 CGACTCTCGGGTTTCGCC 60.506 66.667 0.00 0.00 36.00 5.54
2265 2399 2.654877 GACTCTCGGGTTTCGCCA 59.345 61.111 0.00 0.00 39.65 5.69
2266 2400 1.218316 GACTCTCGGGTTTCGCCAT 59.782 57.895 0.00 0.00 39.65 4.40
2267 2401 0.458669 GACTCTCGGGTTTCGCCATA 59.541 55.000 0.00 0.00 39.65 2.74
2268 2402 1.068741 GACTCTCGGGTTTCGCCATAT 59.931 52.381 0.00 0.00 39.65 1.78
2269 2403 1.068741 ACTCTCGGGTTTCGCCATATC 59.931 52.381 0.00 0.00 39.65 1.63
2270 2404 1.341531 CTCTCGGGTTTCGCCATATCT 59.658 52.381 0.00 0.00 39.65 1.98
2271 2405 1.068588 TCTCGGGTTTCGCCATATCTG 59.931 52.381 0.00 0.00 39.65 2.90
2272 2406 0.105964 TCGGGTTTCGCCATATCTGG 59.894 55.000 0.00 0.00 46.17 3.86
2280 2414 2.357517 CCATATCTGGCCGCCGTC 60.358 66.667 4.58 0.00 35.23 4.79
2281 2415 2.734723 CATATCTGGCCGCCGTCG 60.735 66.667 4.58 0.00 0.00 5.12
2293 2427 2.509336 CCGTCGGCATGTGGTCTC 60.509 66.667 0.00 0.00 0.00 3.36
2294 2428 2.261361 CGTCGGCATGTGGTCTCA 59.739 61.111 0.00 0.00 0.00 3.27
2295 2429 1.807165 CGTCGGCATGTGGTCTCAG 60.807 63.158 0.00 0.00 0.00 3.35
2296 2430 1.448540 GTCGGCATGTGGTCTCAGG 60.449 63.158 0.00 0.00 0.00 3.86
2297 2431 1.913262 TCGGCATGTGGTCTCAGGT 60.913 57.895 0.00 0.00 0.00 4.00
2298 2432 1.742880 CGGCATGTGGTCTCAGGTG 60.743 63.158 0.00 0.00 0.00 4.00
2299 2433 1.376466 GGCATGTGGTCTCAGGTGT 59.624 57.895 0.00 0.00 0.00 4.16
2300 2434 0.957395 GGCATGTGGTCTCAGGTGTG 60.957 60.000 0.00 0.00 0.00 3.82
2301 2435 0.957395 GCATGTGGTCTCAGGTGTGG 60.957 60.000 0.00 0.00 0.00 4.17
2302 2436 0.957395 CATGTGGTCTCAGGTGTGGC 60.957 60.000 0.00 0.00 0.00 5.01
2303 2437 2.357517 GTGGTCTCAGGTGTGGCG 60.358 66.667 0.00 0.00 0.00 5.69
2304 2438 3.625897 TGGTCTCAGGTGTGGCGG 61.626 66.667 0.00 0.00 0.00 6.13
2305 2439 4.394712 GGTCTCAGGTGTGGCGGG 62.395 72.222 0.00 0.00 0.00 6.13
2306 2440 4.394712 GTCTCAGGTGTGGCGGGG 62.395 72.222 0.00 0.00 0.00 5.73
2307 2441 4.954118 TCTCAGGTGTGGCGGGGT 62.954 66.667 0.00 0.00 0.00 4.95
2308 2442 4.394712 CTCAGGTGTGGCGGGGTC 62.395 72.222 0.00 0.00 0.00 4.46
2311 2445 4.326227 AGGTGTGGCGGGGTCCTA 62.326 66.667 0.00 0.00 0.00 2.94
2312 2446 3.782443 GGTGTGGCGGGGTCCTAG 61.782 72.222 0.00 0.00 0.00 3.02
2313 2447 3.782443 GTGTGGCGGGGTCCTAGG 61.782 72.222 0.82 0.82 0.00 3.02
2321 2455 4.862823 GGGTCCTAGGGGCTCGCT 62.863 72.222 9.46 0.00 0.00 4.93
2322 2456 3.541713 GGTCCTAGGGGCTCGCTG 61.542 72.222 9.46 0.00 0.00 5.18
2323 2457 3.541713 GTCCTAGGGGCTCGCTGG 61.542 72.222 9.46 0.06 0.00 4.85
2333 2467 4.441695 CTCGCTGGCGCTGGAAGA 62.442 66.667 7.64 0.00 39.59 2.87
2334 2468 3.939837 CTCGCTGGCGCTGGAAGAA 62.940 63.158 7.64 0.00 39.59 2.52
2335 2469 3.494336 CGCTGGCGCTGGAAGAAG 61.494 66.667 7.64 0.00 34.07 2.85
2336 2470 2.359230 GCTGGCGCTGGAAGAAGT 60.359 61.111 7.64 0.00 34.07 3.01
2337 2471 2.684843 GCTGGCGCTGGAAGAAGTG 61.685 63.158 7.64 0.00 34.07 3.16
2338 2472 1.302033 CTGGCGCTGGAAGAAGTGT 60.302 57.895 7.64 0.00 34.07 3.55
2339 2473 0.886490 CTGGCGCTGGAAGAAGTGTT 60.886 55.000 7.64 0.00 34.07 3.32
2340 2474 0.394938 TGGCGCTGGAAGAAGTGTTA 59.605 50.000 7.64 0.00 34.07 2.41
2341 2475 1.003118 TGGCGCTGGAAGAAGTGTTAT 59.997 47.619 7.64 0.00 34.07 1.89
2342 2476 2.235155 TGGCGCTGGAAGAAGTGTTATA 59.765 45.455 7.64 0.00 34.07 0.98
2343 2477 3.118408 TGGCGCTGGAAGAAGTGTTATAT 60.118 43.478 7.64 0.00 34.07 0.86
2344 2478 3.248602 GGCGCTGGAAGAAGTGTTATATG 59.751 47.826 7.64 0.00 34.07 1.78
2345 2479 4.119862 GCGCTGGAAGAAGTGTTATATGA 58.880 43.478 0.00 0.00 34.07 2.15
2346 2480 4.210120 GCGCTGGAAGAAGTGTTATATGAG 59.790 45.833 0.00 0.00 34.07 2.90
2347 2481 4.747108 CGCTGGAAGAAGTGTTATATGAGG 59.253 45.833 0.00 0.00 34.07 3.86
2348 2482 5.451937 CGCTGGAAGAAGTGTTATATGAGGA 60.452 44.000 0.00 0.00 34.07 3.71
2349 2483 5.755861 GCTGGAAGAAGTGTTATATGAGGAC 59.244 44.000 0.00 0.00 34.07 3.85
2350 2484 6.407525 GCTGGAAGAAGTGTTATATGAGGACT 60.408 42.308 0.00 0.00 34.07 3.85
2351 2485 7.496346 TGGAAGAAGTGTTATATGAGGACTT 57.504 36.000 0.00 0.00 0.00 3.01
2352 2486 8.603898 TGGAAGAAGTGTTATATGAGGACTTA 57.396 34.615 0.00 0.00 0.00 2.24
2353 2487 8.696374 TGGAAGAAGTGTTATATGAGGACTTAG 58.304 37.037 0.00 0.00 0.00 2.18
2354 2488 8.915036 GGAAGAAGTGTTATATGAGGACTTAGA 58.085 37.037 0.00 0.00 0.00 2.10
2355 2489 9.959749 GAAGAAGTGTTATATGAGGACTTAGAG 57.040 37.037 0.00 0.00 0.00 2.43
2356 2490 9.702253 AAGAAGTGTTATATGAGGACTTAGAGA 57.298 33.333 0.00 0.00 0.00 3.10
2357 2491 9.875708 AGAAGTGTTATATGAGGACTTAGAGAT 57.124 33.333 0.00 0.00 0.00 2.75
2359 2493 9.647918 AAGTGTTATATGAGGACTTAGAGATCA 57.352 33.333 0.00 0.00 0.00 2.92
2360 2494 9.647918 AGTGTTATATGAGGACTTAGAGATCAA 57.352 33.333 0.00 0.00 0.00 2.57
2366 2500 9.829507 ATATGAGGACTTAGAGATCAAACAAAG 57.170 33.333 0.00 0.00 0.00 2.77
2367 2501 7.303182 TGAGGACTTAGAGATCAAACAAAGA 57.697 36.000 0.00 0.00 0.00 2.52
2368 2502 7.735917 TGAGGACTTAGAGATCAAACAAAGAA 58.264 34.615 0.00 0.00 0.00 2.52
2369 2503 8.378565 TGAGGACTTAGAGATCAAACAAAGAAT 58.621 33.333 0.00 0.00 0.00 2.40
2370 2504 9.225436 GAGGACTTAGAGATCAAACAAAGAATT 57.775 33.333 0.00 0.00 0.00 2.17
2371 2505 9.579932 AGGACTTAGAGATCAAACAAAGAATTT 57.420 29.630 0.00 0.00 40.26 1.82
2387 2521 4.764172 AGAATTTGTCTCTCCATTCCTCG 58.236 43.478 0.00 0.00 0.00 4.63
2388 2522 3.550437 ATTTGTCTCTCCATTCCTCGG 57.450 47.619 0.00 0.00 0.00 4.63
2389 2523 1.195115 TTGTCTCTCCATTCCTCGGG 58.805 55.000 0.00 0.00 0.00 5.14
2390 2524 1.330655 TGTCTCTCCATTCCTCGGGC 61.331 60.000 0.00 0.00 0.00 6.13
2391 2525 2.127869 TCTCTCCATTCCTCGGGCG 61.128 63.158 0.00 0.00 0.00 6.13
2392 2526 3.154473 TCTCCATTCCTCGGGCGG 61.154 66.667 0.00 0.00 0.00 6.13
2393 2527 4.918201 CTCCATTCCTCGGGCGGC 62.918 72.222 0.00 0.00 0.00 6.53
2442 2576 4.589675 TTCGGGGGCAGCCGTTTT 62.590 61.111 5.00 0.00 0.00 2.43
2443 2577 4.589675 TCGGGGGCAGCCGTTTTT 62.590 61.111 5.00 0.00 0.00 1.94
2444 2578 4.356442 CGGGGGCAGCCGTTTTTG 62.356 66.667 5.00 0.00 0.00 2.44
2445 2579 4.002506 GGGGGCAGCCGTTTTTGG 62.003 66.667 5.00 0.00 0.00 3.28
2446 2580 4.002506 GGGGCAGCCGTTTTTGGG 62.003 66.667 5.00 0.00 0.00 4.12
2452 2586 2.660224 GCCGTTTTTGGGCGTTGG 60.660 61.111 0.00 0.00 41.39 3.77
2453 2587 2.660224 CCGTTTTTGGGCGTTGGC 60.660 61.111 0.00 0.00 38.90 4.52
2454 2588 3.027449 CGTTTTTGGGCGTTGGCG 61.027 61.111 0.00 0.00 41.24 5.69
2455 2589 2.660224 GTTTTTGGGCGTTGGCGG 60.660 61.111 0.00 0.00 41.24 6.13
2456 2590 3.917760 TTTTTGGGCGTTGGCGGG 61.918 61.111 0.00 0.00 41.24 6.13
2469 2603 3.474570 GCGGGGGAGCTGTCAGAT 61.475 66.667 3.32 0.00 0.00 2.90
2470 2604 2.503061 CGGGGGAGCTGTCAGATG 59.497 66.667 3.32 0.00 0.00 2.90
2471 2605 2.060383 CGGGGGAGCTGTCAGATGA 61.060 63.158 3.32 0.00 0.00 2.92
2472 2606 1.524482 GGGGGAGCTGTCAGATGAC 59.476 63.158 3.32 6.01 44.97 3.06
2481 2615 1.064946 GTCAGATGACGAGGAGGCG 59.935 63.158 0.00 0.00 35.12 5.52
2482 2616 2.279120 CAGATGACGAGGAGGCGC 60.279 66.667 0.00 0.00 33.86 6.53
2483 2617 3.532155 AGATGACGAGGAGGCGCC 61.532 66.667 21.89 21.89 33.86 6.53
2484 2618 4.593864 GATGACGAGGAGGCGCCC 62.594 72.222 26.15 15.07 37.37 6.13
2521 2655 3.151710 CGCCACCGTAGATCCCCA 61.152 66.667 0.00 0.00 0.00 4.96
2522 2656 2.504519 GCCACCGTAGATCCCCAC 59.495 66.667 0.00 0.00 0.00 4.61
2523 2657 2.812499 CCACCGTAGATCCCCACG 59.188 66.667 5.40 5.40 37.89 4.94
2527 2661 2.812499 CGTAGATCCCCACGGTGG 59.188 66.667 20.41 20.41 37.25 4.61
2536 2670 3.246112 CCACGGTGGGGGACTTCA 61.246 66.667 19.63 0.00 32.67 3.02
2537 2671 2.602676 CCACGGTGGGGGACTTCAT 61.603 63.158 19.63 0.00 32.67 2.57
2538 2672 1.078426 CACGGTGGGGGACTTCATC 60.078 63.158 0.00 0.00 0.00 2.92
2539 2673 2.186903 CGGTGGGGGACTTCATCG 59.813 66.667 0.00 0.00 31.65 3.84
2540 2674 2.124695 GGTGGGGGACTTCATCGC 60.125 66.667 0.00 0.00 39.56 4.58
2541 2675 2.668632 GTGGGGGACTTCATCGCA 59.331 61.111 0.00 0.00 42.09 5.10
2542 2676 1.745489 GTGGGGGACTTCATCGCAC 60.745 63.158 0.00 0.00 44.03 5.34
2543 2677 1.918293 TGGGGGACTTCATCGCACT 60.918 57.895 0.00 0.00 44.10 4.40
2544 2678 1.450312 GGGGGACTTCATCGCACTG 60.450 63.158 0.00 0.00 40.55 3.66
2545 2679 1.450312 GGGGACTTCATCGCACTGG 60.450 63.158 0.00 0.00 42.09 4.00
2546 2680 2.109126 GGGACTTCATCGCACTGGC 61.109 63.158 0.00 0.00 40.04 4.85
2547 2681 1.078848 GGACTTCATCGCACTGGCT 60.079 57.895 0.00 0.00 38.10 4.75
2548 2682 0.175760 GGACTTCATCGCACTGGCTA 59.824 55.000 0.00 0.00 38.10 3.93
2549 2683 1.281899 GACTTCATCGCACTGGCTAC 58.718 55.000 0.00 0.00 38.10 3.58
2550 2684 0.608130 ACTTCATCGCACTGGCTACA 59.392 50.000 0.00 0.00 38.10 2.74
2551 2685 1.208052 ACTTCATCGCACTGGCTACAT 59.792 47.619 0.00 0.00 38.10 2.29
2552 2686 1.863454 CTTCATCGCACTGGCTACATC 59.137 52.381 0.00 0.00 38.10 3.06
2553 2687 0.249031 TCATCGCACTGGCTACATCG 60.249 55.000 0.00 0.00 38.10 3.84
2554 2688 1.592669 ATCGCACTGGCTACATCGC 60.593 57.895 0.00 0.00 38.10 4.58
2561 2695 4.971125 GGCTACATCGCCGAGGGC 62.971 72.222 3.07 0.00 46.75 5.19
2571 2705 4.860881 CCGAGGGCTGGCTAGGGA 62.861 72.222 0.00 0.00 0.00 4.20
2572 2706 3.230245 CGAGGGCTGGCTAGGGAG 61.230 72.222 0.00 0.00 0.00 4.30
2573 2707 2.846754 GAGGGCTGGCTAGGGAGG 60.847 72.222 0.00 0.00 0.00 4.30
2574 2708 3.700350 AGGGCTGGCTAGGGAGGT 61.700 66.667 0.00 0.00 0.00 3.85
2575 2709 3.164977 GGGCTGGCTAGGGAGGTC 61.165 72.222 0.00 0.00 0.00 3.85
2576 2710 3.541713 GGCTGGCTAGGGAGGTCG 61.542 72.222 0.00 0.00 0.00 4.79
2577 2711 3.541713 GCTGGCTAGGGAGGTCGG 61.542 72.222 0.00 0.00 0.00 4.79
2578 2712 3.541713 CTGGCTAGGGAGGTCGGC 61.542 72.222 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
296 331 9.226606 TCTTTTCTTTTTCCTTTTCCTTTTTCC 57.773 29.630 0.00 0.00 0.00 3.13
328 364 9.541143 TTTCTGTTTCTGTTTCTGTTTCTTTTT 57.459 25.926 0.00 0.00 0.00 1.94
333 369 7.312899 TCCTTTTCTGTTTCTGTTTCTGTTTC 58.687 34.615 0.00 0.00 0.00 2.78
334 370 7.227049 TCCTTTTCTGTTTCTGTTTCTGTTT 57.773 32.000 0.00 0.00 0.00 2.83
335 371 6.834168 TCCTTTTCTGTTTCTGTTTCTGTT 57.166 33.333 0.00 0.00 0.00 3.16
336 372 6.834168 TTCCTTTTCTGTTTCTGTTTCTGT 57.166 33.333 0.00 0.00 0.00 3.41
337 373 7.276438 CCTTTTCCTTTTCTGTTTCTGTTTCTG 59.724 37.037 0.00 0.00 0.00 3.02
338 374 7.178451 TCCTTTTCCTTTTCTGTTTCTGTTTCT 59.822 33.333 0.00 0.00 0.00 2.52
339 375 7.275779 GTCCTTTTCCTTTTCTGTTTCTGTTTC 59.724 37.037 0.00 0.00 0.00 2.78
340 376 7.097192 GTCCTTTTCCTTTTCTGTTTCTGTTT 58.903 34.615 0.00 0.00 0.00 2.83
341 377 6.210584 TGTCCTTTTCCTTTTCTGTTTCTGTT 59.789 34.615 0.00 0.00 0.00 3.16
342 378 5.714806 TGTCCTTTTCCTTTTCTGTTTCTGT 59.285 36.000 0.00 0.00 0.00 3.41
343 379 6.207691 TGTCCTTTTCCTTTTCTGTTTCTG 57.792 37.500 0.00 0.00 0.00 3.02
504 599 2.876955 CGGGCGTAGGTTACACGA 59.123 61.111 0.00 0.00 41.91 4.35
505 600 2.882301 GCGGGCGTAGGTTACACG 60.882 66.667 0.00 0.00 42.24 4.49
508 603 4.535786 GGGGCGGGCGTAGGTTAC 62.536 72.222 0.00 0.00 0.00 2.50
557 653 4.527509 TTTGAGCAGAAGACTGACCTAG 57.472 45.455 0.00 0.00 46.03 3.02
558 654 4.955811 TTTTGAGCAGAAGACTGACCTA 57.044 40.909 0.00 0.00 46.03 3.08
668 764 3.412386 ACAAGTCTTTGTGTATGCCTCC 58.588 45.455 0.00 0.00 45.54 4.30
698 794 1.280457 CTAGGGAAGACTTGGGCACT 58.720 55.000 0.00 0.00 0.00 4.40
733 829 1.823260 TTAAGCCGCGTGTGTCAACG 61.823 55.000 4.92 0.00 46.30 4.10
748 844 0.676782 CCGGGGAACAGGCTGTTAAG 60.677 60.000 31.24 20.82 41.28 1.85
809 905 6.675987 AGTACTAGTAGTTGAAGTCCGTTTG 58.324 40.000 8.40 0.00 0.00 2.93
829 925 8.517878 TGACATTGACTAACCAAGTACTAGTAC 58.482 37.037 23.03 23.03 39.07 2.73
833 929 9.214957 CAATTGACATTGACTAACCAAGTACTA 57.785 33.333 0.00 0.00 42.35 1.82
834 930 7.174946 CCAATTGACATTGACTAACCAAGTACT 59.825 37.037 7.12 0.00 42.35 2.73
835 931 7.040686 ACCAATTGACATTGACTAACCAAGTAC 60.041 37.037 7.12 0.00 42.35 2.73
836 932 7.001674 ACCAATTGACATTGACTAACCAAGTA 58.998 34.615 7.12 0.00 42.35 2.24
868 964 1.593006 GCGTACGTGATTGATTCCCTG 59.407 52.381 17.90 0.00 0.00 4.45
1028 1152 1.576421 CCGAAGAACCTGCAACAGC 59.424 57.895 0.00 0.00 0.00 4.40
1032 1156 2.668212 CCGCCGAAGAACCTGCAA 60.668 61.111 0.00 0.00 0.00 4.08
1037 1161 4.103103 GCAAGCCGCCGAAGAACC 62.103 66.667 0.00 0.00 32.94 3.62
1076 1200 3.056962 CCAGTAGATGAGGATGATGACGG 60.057 52.174 0.00 0.00 0.00 4.79
1207 1334 2.976882 GGAGGCTGGGGTTGTATATGTA 59.023 50.000 0.00 0.00 0.00 2.29
1623 1756 2.006888 ACCGACAGCGATTGTATTTGG 58.993 47.619 0.00 0.00 41.05 3.28
1627 1760 2.540515 CTTCACCGACAGCGATTGTAT 58.459 47.619 0.00 0.00 41.05 2.29
1696 1829 4.408182 ACTAGCACGCTAATCTCCAAAT 57.592 40.909 0.00 0.00 0.00 2.32
1746 1880 3.365264 CGATCACCATCCCAAATAATGCG 60.365 47.826 0.00 0.00 0.00 4.73
1771 1905 2.254546 TCGTGTGCACAGGAATTTCT 57.745 45.000 33.45 0.00 37.75 2.52
1772 1906 3.236816 CAATCGTGTGCACAGGAATTTC 58.763 45.455 37.17 17.11 42.92 2.17
1773 1907 2.622942 ACAATCGTGTGCACAGGAATTT 59.377 40.909 37.17 27.32 42.92 1.82
1774 1908 2.229792 ACAATCGTGTGCACAGGAATT 58.770 42.857 37.17 28.06 42.92 2.17
1775 1909 1.896220 ACAATCGTGTGCACAGGAAT 58.104 45.000 37.17 29.54 42.92 3.01
1776 1910 1.674359 AACAATCGTGTGCACAGGAA 58.326 45.000 37.17 24.11 42.92 3.36
1777 1911 1.333308 CAAACAATCGTGTGCACAGGA 59.667 47.619 36.12 36.12 43.67 3.86
1778 1912 1.333308 TCAAACAATCGTGTGCACAGG 59.667 47.619 29.08 29.08 38.27 4.00
1779 1913 2.223226 TGTCAAACAATCGTGTGCACAG 60.223 45.455 22.40 14.50 38.27 3.66
1780 1914 1.740025 TGTCAAACAATCGTGTGCACA 59.260 42.857 17.42 17.42 38.27 4.57
1781 1915 2.031560 TCTGTCAAACAATCGTGTGCAC 59.968 45.455 10.75 10.75 38.27 4.57
1782 1916 2.284190 TCTGTCAAACAATCGTGTGCA 58.716 42.857 0.00 0.00 38.27 4.57
1783 1917 3.058983 TCATCTGTCAAACAATCGTGTGC 60.059 43.478 0.00 0.00 38.27 4.57
1784 1918 4.730600 TCATCTGTCAAACAATCGTGTG 57.269 40.909 0.00 0.00 38.27 3.82
1785 1919 5.947228 AATCATCTGTCAAACAATCGTGT 57.053 34.783 0.00 0.00 40.75 4.49
1786 1920 7.358600 CCAAAAATCATCTGTCAAACAATCGTG 60.359 37.037 0.00 0.00 0.00 4.35
1787 1921 6.642131 CCAAAAATCATCTGTCAAACAATCGT 59.358 34.615 0.00 0.00 0.00 3.73
1788 1922 6.862608 TCCAAAAATCATCTGTCAAACAATCG 59.137 34.615 0.00 0.00 0.00 3.34
1789 1923 7.148918 CGTCCAAAAATCATCTGTCAAACAATC 60.149 37.037 0.00 0.00 0.00 2.67
1790 1924 6.642131 CGTCCAAAAATCATCTGTCAAACAAT 59.358 34.615 0.00 0.00 0.00 2.71
1791 1925 5.976534 CGTCCAAAAATCATCTGTCAAACAA 59.023 36.000 0.00 0.00 0.00 2.83
1792 1926 5.298026 TCGTCCAAAAATCATCTGTCAAACA 59.702 36.000 0.00 0.00 0.00 2.83
1793 1927 5.757886 TCGTCCAAAAATCATCTGTCAAAC 58.242 37.500 0.00 0.00 0.00 2.93
1794 1928 6.380995 CATCGTCCAAAAATCATCTGTCAAA 58.619 36.000 0.00 0.00 0.00 2.69
1795 1929 5.619757 GCATCGTCCAAAAATCATCTGTCAA 60.620 40.000 0.00 0.00 0.00 3.18
1796 1930 4.142622 GCATCGTCCAAAAATCATCTGTCA 60.143 41.667 0.00 0.00 0.00 3.58
1797 1931 4.095483 AGCATCGTCCAAAAATCATCTGTC 59.905 41.667 0.00 0.00 0.00 3.51
1798 1932 4.012374 AGCATCGTCCAAAAATCATCTGT 58.988 39.130 0.00 0.00 0.00 3.41
1799 1933 4.627611 AGCATCGTCCAAAAATCATCTG 57.372 40.909 0.00 0.00 0.00 2.90
1800 1934 4.142315 CCAAGCATCGTCCAAAAATCATCT 60.142 41.667 0.00 0.00 0.00 2.90
1801 1935 4.107622 CCAAGCATCGTCCAAAAATCATC 58.892 43.478 0.00 0.00 0.00 2.92
1802 1936 3.763360 TCCAAGCATCGTCCAAAAATCAT 59.237 39.130 0.00 0.00 0.00 2.45
1803 1937 3.153130 TCCAAGCATCGTCCAAAAATCA 58.847 40.909 0.00 0.00 0.00 2.57
1804 1938 3.848272 TCCAAGCATCGTCCAAAAATC 57.152 42.857 0.00 0.00 0.00 2.17
1805 1939 3.181497 CGATCCAAGCATCGTCCAAAAAT 60.181 43.478 0.00 0.00 40.72 1.82
1806 1940 2.161410 CGATCCAAGCATCGTCCAAAAA 59.839 45.455 0.00 0.00 40.72 1.94
1807 1941 1.737236 CGATCCAAGCATCGTCCAAAA 59.263 47.619 0.00 0.00 40.72 2.44
1808 1942 1.066502 TCGATCCAAGCATCGTCCAAA 60.067 47.619 4.34 0.00 44.99 3.28
1809 1943 0.534873 TCGATCCAAGCATCGTCCAA 59.465 50.000 4.34 0.00 44.99 3.53
1810 1944 0.752658 ATCGATCCAAGCATCGTCCA 59.247 50.000 0.00 0.00 44.99 4.02
1811 1945 1.143305 CATCGATCCAAGCATCGTCC 58.857 55.000 0.00 0.00 44.99 4.79
1812 1946 1.143305 CCATCGATCCAAGCATCGTC 58.857 55.000 0.00 0.00 44.99 4.20
1813 1947 0.882042 GCCATCGATCCAAGCATCGT 60.882 55.000 0.00 0.00 44.99 3.73
1814 1948 0.602106 AGCCATCGATCCAAGCATCG 60.602 55.000 0.00 0.00 45.91 3.84
1815 1949 0.873054 CAGCCATCGATCCAAGCATC 59.127 55.000 0.00 0.00 0.00 3.91
1816 1950 1.170919 GCAGCCATCGATCCAAGCAT 61.171 55.000 0.00 0.00 0.00 3.79
1817 1951 1.820906 GCAGCCATCGATCCAAGCA 60.821 57.895 0.00 0.00 0.00 3.91
1818 1952 1.525535 AGCAGCCATCGATCCAAGC 60.526 57.895 0.00 0.00 0.00 4.01
1819 1953 1.783031 GCAGCAGCCATCGATCCAAG 61.783 60.000 0.00 0.00 33.58 3.61
1820 1954 1.820906 GCAGCAGCCATCGATCCAA 60.821 57.895 0.00 0.00 33.58 3.53
1821 1955 2.203112 GCAGCAGCCATCGATCCA 60.203 61.111 0.00 0.00 33.58 3.41
1822 1956 0.321034 TATGCAGCAGCCATCGATCC 60.321 55.000 0.00 0.00 41.13 3.36
1823 1957 0.795085 GTATGCAGCAGCCATCGATC 59.205 55.000 0.00 0.00 41.13 3.69
1824 1958 0.107268 TGTATGCAGCAGCCATCGAT 59.893 50.000 0.00 0.00 41.13 3.59
1825 1959 0.531311 CTGTATGCAGCAGCCATCGA 60.531 55.000 0.00 0.00 41.13 3.59
1826 1960 0.531311 TCTGTATGCAGCAGCCATCG 60.531 55.000 14.18 0.00 42.29 3.84
1827 1961 1.332997 GTTCTGTATGCAGCAGCCATC 59.667 52.381 14.18 3.75 42.29 3.51
1828 1962 1.340308 TGTTCTGTATGCAGCAGCCAT 60.340 47.619 14.18 0.00 42.29 4.40
1829 1963 0.036590 TGTTCTGTATGCAGCAGCCA 59.963 50.000 14.18 10.89 42.29 4.75
1830 1964 1.386533 ATGTTCTGTATGCAGCAGCC 58.613 50.000 14.18 8.95 42.29 4.85
1831 1965 2.033407 CGTATGTTCTGTATGCAGCAGC 60.033 50.000 14.18 0.00 42.29 5.25
1832 1966 3.000623 CACGTATGTTCTGTATGCAGCAG 59.999 47.826 5.85 13.14 42.29 4.24
1833 1967 2.929398 CACGTATGTTCTGTATGCAGCA 59.071 45.455 5.85 0.00 42.29 4.41
1834 1968 3.186909 TCACGTATGTTCTGTATGCAGC 58.813 45.455 5.85 0.00 42.29 5.25
1835 1969 7.337718 GTTTATCACGTATGTTCTGTATGCAG 58.662 38.462 4.14 4.14 43.87 4.41
1836 1970 6.020201 CGTTTATCACGTATGTTCTGTATGCA 60.020 38.462 0.00 0.00 44.49 3.96
1837 1971 6.344800 CGTTTATCACGTATGTTCTGTATGC 58.655 40.000 0.00 0.00 44.49 3.14
1852 1986 4.563184 CAGAGAACTACAGGCGTTTATCAC 59.437 45.833 0.00 0.00 0.00 3.06
1853 1987 4.219944 ACAGAGAACTACAGGCGTTTATCA 59.780 41.667 0.00 0.00 0.00 2.15
1854 1988 4.745649 ACAGAGAACTACAGGCGTTTATC 58.254 43.478 0.00 0.00 0.00 1.75
1855 1989 4.381718 GGACAGAGAACTACAGGCGTTTAT 60.382 45.833 0.00 0.00 0.00 1.40
1856 1990 3.057033 GGACAGAGAACTACAGGCGTTTA 60.057 47.826 0.00 0.00 0.00 2.01
1857 1991 2.288886 GGACAGAGAACTACAGGCGTTT 60.289 50.000 0.00 0.00 0.00 3.60
1858 1992 1.272769 GGACAGAGAACTACAGGCGTT 59.727 52.381 0.00 0.00 0.00 4.84
1859 1993 0.889306 GGACAGAGAACTACAGGCGT 59.111 55.000 0.00 0.00 0.00 5.68
1860 1994 1.133407 GAGGACAGAGAACTACAGGCG 59.867 57.143 0.00 0.00 0.00 5.52
1861 1995 2.425668 GAGAGGACAGAGAACTACAGGC 59.574 54.545 0.00 0.00 0.00 4.85
1862 1996 3.691575 TGAGAGGACAGAGAACTACAGG 58.308 50.000 0.00 0.00 0.00 4.00
1863 1997 5.713792 TTTGAGAGGACAGAGAACTACAG 57.286 43.478 0.00 0.00 0.00 2.74
1864 1998 6.570571 CGATTTTGAGAGGACAGAGAACTACA 60.571 42.308 0.00 0.00 0.00 2.74
1865 1999 5.802956 CGATTTTGAGAGGACAGAGAACTAC 59.197 44.000 0.00 0.00 0.00 2.73
1866 2000 5.477291 ACGATTTTGAGAGGACAGAGAACTA 59.523 40.000 0.00 0.00 0.00 2.24
1867 2001 4.282195 ACGATTTTGAGAGGACAGAGAACT 59.718 41.667 0.00 0.00 0.00 3.01
1868 2002 4.387256 CACGATTTTGAGAGGACAGAGAAC 59.613 45.833 0.00 0.00 0.00 3.01
1869 2003 4.560128 CACGATTTTGAGAGGACAGAGAA 58.440 43.478 0.00 0.00 0.00 2.87
1870 2004 3.615110 GCACGATTTTGAGAGGACAGAGA 60.615 47.826 0.00 0.00 0.00 3.10
1871 2005 2.670414 GCACGATTTTGAGAGGACAGAG 59.330 50.000 0.00 0.00 0.00 3.35
1872 2006 2.037121 TGCACGATTTTGAGAGGACAGA 59.963 45.455 0.00 0.00 0.00 3.41
1873 2007 2.158449 GTGCACGATTTTGAGAGGACAG 59.842 50.000 0.00 0.00 0.00 3.51
1874 2008 2.143122 GTGCACGATTTTGAGAGGACA 58.857 47.619 0.00 0.00 0.00 4.02
1875 2009 2.143122 TGTGCACGATTTTGAGAGGAC 58.857 47.619 13.13 0.00 0.00 3.85
1876 2010 2.542020 TGTGCACGATTTTGAGAGGA 57.458 45.000 13.13 0.00 0.00 3.71
1877 2011 3.300009 GTTTGTGCACGATTTTGAGAGG 58.700 45.455 13.13 0.00 0.00 3.69
1878 2012 2.966708 CGTTTGTGCACGATTTTGAGAG 59.033 45.455 13.13 0.00 43.15 3.20
1879 2013 2.609916 TCGTTTGTGCACGATTTTGAGA 59.390 40.909 13.13 0.70 44.18 3.27
1880 2014 2.980586 TCGTTTGTGCACGATTTTGAG 58.019 42.857 13.13 0.00 44.18 3.02
1888 2022 1.129809 GGACGATCGTTTGTGCACG 59.870 57.895 23.63 0.00 41.78 5.34
1889 2023 1.129809 CGGACGATCGTTTGTGCAC 59.870 57.895 23.63 10.75 0.00 4.57
1890 2024 1.300311 ACGGACGATCGTTTGTGCA 60.300 52.632 23.63 0.00 40.85 4.57
1891 2025 1.129809 CACGGACGATCGTTTGTGC 59.870 57.895 28.72 15.55 41.86 4.57
1892 2026 1.384409 GTACACGGACGATCGTTTGTG 59.616 52.381 33.57 33.57 41.86 3.33
1893 2027 1.666888 GGTACACGGACGATCGTTTGT 60.667 52.381 23.63 24.52 41.86 2.83
1894 2028 0.986992 GGTACACGGACGATCGTTTG 59.013 55.000 23.63 20.50 41.86 2.93
1895 2029 0.597568 TGGTACACGGACGATCGTTT 59.402 50.000 23.63 7.19 41.86 3.60
1896 2030 0.169672 CTGGTACACGGACGATCGTT 59.830 55.000 23.63 8.51 41.86 3.85
1897 2031 1.798735 CTGGTACACGGACGATCGT 59.201 57.895 22.97 22.97 44.91 3.73
1898 2032 1.585521 GCTGGTACACGGACGATCG 60.586 63.158 14.88 14.88 0.00 3.69
1899 2033 1.585521 CGCTGGTACACGGACGATC 60.586 63.158 0.00 0.00 31.41 3.69
1900 2034 2.488355 CGCTGGTACACGGACGAT 59.512 61.111 0.00 0.00 31.41 3.73
1901 2035 4.409218 GCGCTGGTACACGGACGA 62.409 66.667 0.00 0.00 34.50 4.20
1902 2036 4.415332 AGCGCTGGTACACGGACG 62.415 66.667 10.39 0.00 34.50 4.79
1903 2037 2.506438 GAGCGCTGGTACACGGAC 60.506 66.667 18.48 0.00 34.50 4.79
1904 2038 4.111016 CGAGCGCTGGTACACGGA 62.111 66.667 18.48 0.00 34.50 4.69
1907 2041 3.181967 CTGCGAGCGCTGGTACAC 61.182 66.667 18.48 0.22 42.51 2.90
1908 2042 3.626680 GACTGCGAGCGCTGGTACA 62.627 63.158 18.48 7.16 43.03 2.90
1909 2043 2.881352 GACTGCGAGCGCTGGTAC 60.881 66.667 18.48 1.55 43.03 3.34
1910 2044 4.476410 CGACTGCGAGCGCTGGTA 62.476 66.667 18.48 13.56 43.03 3.25
1922 2056 2.205074 GTGATAATGCAGGGACGACTG 58.795 52.381 0.00 0.00 41.41 3.51
1923 2057 1.831106 TGTGATAATGCAGGGACGACT 59.169 47.619 0.00 0.00 0.00 4.18
1924 2058 2.205074 CTGTGATAATGCAGGGACGAC 58.795 52.381 0.00 0.00 0.00 4.34
1925 2059 1.831106 ACTGTGATAATGCAGGGACGA 59.169 47.619 0.00 0.00 37.07 4.20
1926 2060 2.315925 ACTGTGATAATGCAGGGACG 57.684 50.000 0.00 0.00 37.07 4.79
1927 2061 4.449068 CGATAACTGTGATAATGCAGGGAC 59.551 45.833 0.00 0.00 37.07 4.46
1928 2062 4.343814 TCGATAACTGTGATAATGCAGGGA 59.656 41.667 0.00 0.00 37.07 4.20
2015 2149 1.838077 GACCTTACAGCCTGGGTATGT 59.162 52.381 0.00 0.00 31.60 2.29
2021 2155 0.537188 ACATCGACCTTACAGCCTGG 59.463 55.000 0.00 0.00 0.00 4.45
2024 2158 1.409427 AGCTACATCGACCTTACAGCC 59.591 52.381 0.00 0.00 0.00 4.85
2026 2160 2.034812 GGGAGCTACATCGACCTTACAG 59.965 54.545 0.00 0.00 0.00 2.74
2036 2170 1.340568 GAACCGGTAGGGAGCTACATC 59.659 57.143 8.00 0.00 43.47 3.06
2037 2171 1.411041 GAACCGGTAGGGAGCTACAT 58.589 55.000 8.00 0.00 43.47 2.29
2038 2172 0.685458 GGAACCGGTAGGGAGCTACA 60.685 60.000 8.00 0.00 43.47 2.74
2039 2173 1.398174 GGGAACCGGTAGGGAGCTAC 61.398 65.000 8.00 0.00 40.86 3.58
2040 2174 1.075748 GGGAACCGGTAGGGAGCTA 60.076 63.158 8.00 0.00 40.86 3.32
2041 2175 2.365237 GGGAACCGGTAGGGAGCT 60.365 66.667 8.00 0.00 40.86 4.09
2053 2187 2.687935 AGTTTGTCACATGTGTGGGAAC 59.312 45.455 24.63 21.47 45.65 3.62
2054 2188 2.948979 GAGTTTGTCACATGTGTGGGAA 59.051 45.455 24.63 12.76 45.65 3.97
2055 2189 2.571212 GAGTTTGTCACATGTGTGGGA 58.429 47.619 24.63 3.12 45.65 4.37
2056 2190 1.608590 GGAGTTTGTCACATGTGTGGG 59.391 52.381 24.63 0.00 45.65 4.61
2057 2191 1.608590 GGGAGTTTGTCACATGTGTGG 59.391 52.381 24.63 0.02 45.65 4.17
2058 2192 2.296792 TGGGAGTTTGTCACATGTGTG 58.703 47.619 24.63 6.81 46.91 3.82
2059 2193 2.727123 TGGGAGTTTGTCACATGTGT 57.273 45.000 24.63 4.84 31.65 3.72
2060 2194 3.796504 GCTTTGGGAGTTTGTCACATGTG 60.797 47.826 20.18 20.18 38.83 3.21
2061 2195 2.362077 GCTTTGGGAGTTTGTCACATGT 59.638 45.455 0.00 0.00 38.83 3.21
2062 2196 2.288395 GGCTTTGGGAGTTTGTCACATG 60.288 50.000 0.00 0.00 38.83 3.21
2063 2197 1.963515 GGCTTTGGGAGTTTGTCACAT 59.036 47.619 0.00 0.00 38.83 3.21
2064 2198 1.398692 GGCTTTGGGAGTTTGTCACA 58.601 50.000 0.00 0.00 36.50 3.58
2065 2199 0.673985 GGGCTTTGGGAGTTTGTCAC 59.326 55.000 0.00 0.00 0.00 3.67
2066 2200 0.555769 AGGGCTTTGGGAGTTTGTCA 59.444 50.000 0.00 0.00 0.00 3.58
2067 2201 2.039879 TCTAGGGCTTTGGGAGTTTGTC 59.960 50.000 0.00 0.00 0.00 3.18
2068 2202 2.062636 TCTAGGGCTTTGGGAGTTTGT 58.937 47.619 0.00 0.00 0.00 2.83
2069 2203 2.879103 TCTAGGGCTTTGGGAGTTTG 57.121 50.000 0.00 0.00 0.00 2.93
2070 2204 3.622455 CGAATCTAGGGCTTTGGGAGTTT 60.622 47.826 0.00 0.00 0.00 2.66
2071 2205 2.092914 CGAATCTAGGGCTTTGGGAGTT 60.093 50.000 0.00 0.00 0.00 3.01
2072 2206 1.486726 CGAATCTAGGGCTTTGGGAGT 59.513 52.381 0.00 0.00 0.00 3.85
2073 2207 1.811941 GCGAATCTAGGGCTTTGGGAG 60.812 57.143 0.00 0.00 0.00 4.30
2074 2208 0.180406 GCGAATCTAGGGCTTTGGGA 59.820 55.000 0.00 0.00 0.00 4.37
2075 2209 0.819666 GGCGAATCTAGGGCTTTGGG 60.820 60.000 0.00 0.00 0.00 4.12
2076 2210 0.107214 TGGCGAATCTAGGGCTTTGG 60.107 55.000 0.00 0.00 0.00 3.28
2077 2211 1.605710 CATGGCGAATCTAGGGCTTTG 59.394 52.381 0.00 0.00 0.00 2.77
2078 2212 1.477558 CCATGGCGAATCTAGGGCTTT 60.478 52.381 0.00 0.00 0.00 3.51
2079 2213 0.109342 CCATGGCGAATCTAGGGCTT 59.891 55.000 0.00 0.00 0.00 4.35
2080 2214 0.764369 TCCATGGCGAATCTAGGGCT 60.764 55.000 6.96 0.00 0.00 5.19
2081 2215 0.108585 TTCCATGGCGAATCTAGGGC 59.891 55.000 6.96 0.00 0.00 5.19
2082 2216 2.867109 ATTCCATGGCGAATCTAGGG 57.133 50.000 6.96 0.00 0.00 3.53
2083 2217 2.738846 CGAATTCCATGGCGAATCTAGG 59.261 50.000 6.96 0.00 31.14 3.02
2084 2218 2.158449 GCGAATTCCATGGCGAATCTAG 59.842 50.000 6.96 0.00 31.14 2.43
2085 2219 2.143122 GCGAATTCCATGGCGAATCTA 58.857 47.619 6.96 0.00 31.14 1.98
2086 2220 0.947244 GCGAATTCCATGGCGAATCT 59.053 50.000 6.96 0.00 31.14 2.40
2087 2221 0.662619 TGCGAATTCCATGGCGAATC 59.337 50.000 6.96 1.74 31.14 2.52
2088 2222 1.267806 GATGCGAATTCCATGGCGAAT 59.732 47.619 6.96 4.57 33.84 3.34
2089 2223 0.662619 GATGCGAATTCCATGGCGAA 59.337 50.000 6.96 0.00 0.00 4.70
2090 2224 1.498043 CGATGCGAATTCCATGGCGA 61.498 55.000 6.96 0.00 0.00 5.54
2091 2225 1.082561 CGATGCGAATTCCATGGCG 60.083 57.895 6.96 5.94 0.00 5.69
2092 2226 0.662619 TTCGATGCGAATTCCATGGC 59.337 50.000 6.96 5.36 41.05 4.40
2093 2227 2.212652 TCTTCGATGCGAATTCCATGG 58.787 47.619 4.97 4.97 44.85 3.66
2094 2228 3.422732 CGATCTTCGATGCGAATTCCATG 60.423 47.826 12.41 6.92 44.85 3.66
2095 2229 2.733552 CGATCTTCGATGCGAATTCCAT 59.266 45.455 8.59 8.59 44.85 3.41
2096 2230 2.127251 CGATCTTCGATGCGAATTCCA 58.873 47.619 2.53 0.00 44.85 3.53
2097 2231 1.136502 GCGATCTTCGATGCGAATTCC 60.137 52.381 2.53 0.00 44.85 3.01
2098 2232 2.204111 GCGATCTTCGATGCGAATTC 57.796 50.000 2.53 0.00 44.85 2.17
2104 2238 2.140034 GAGCACGCGATCTTCGATGC 62.140 60.000 15.93 9.92 46.78 3.91
2105 2239 1.543941 GGAGCACGCGATCTTCGATG 61.544 60.000 15.93 0.00 43.74 3.84
2106 2240 1.299468 GGAGCACGCGATCTTCGAT 60.299 57.895 15.93 0.00 43.74 3.59
2107 2241 2.102357 GGAGCACGCGATCTTCGA 59.898 61.111 15.93 0.00 43.74 3.71
2108 2242 1.941734 GAGGAGCACGCGATCTTCG 60.942 63.158 15.93 3.19 43.89 3.79
2109 2243 1.590259 GGAGGAGCACGCGATCTTC 60.590 63.158 15.93 13.30 33.18 2.87
2110 2244 2.496817 GGAGGAGCACGCGATCTT 59.503 61.111 15.93 3.80 0.00 2.40
2111 2245 3.532155 GGGAGGAGCACGCGATCT 61.532 66.667 15.93 9.15 0.00 2.75
2112 2246 4.593864 GGGGAGGAGCACGCGATC 62.594 72.222 15.93 7.73 0.00 3.69
2117 2251 4.227134 CATCGGGGGAGGAGCACG 62.227 72.222 0.00 0.00 0.00 5.34
2118 2252 4.554036 GCATCGGGGGAGGAGCAC 62.554 72.222 0.00 0.00 0.00 4.40
2121 2255 2.455565 ATTGGCATCGGGGGAGGAG 61.456 63.158 0.00 0.00 0.00 3.69
2122 2256 2.368192 ATTGGCATCGGGGGAGGA 60.368 61.111 0.00 0.00 0.00 3.71
2123 2257 2.203394 CATTGGCATCGGGGGAGG 60.203 66.667 0.00 0.00 0.00 4.30
2124 2258 1.526917 GACATTGGCATCGGGGGAG 60.527 63.158 0.00 0.00 0.00 4.30
2125 2259 2.595095 GACATTGGCATCGGGGGA 59.405 61.111 0.00 0.00 0.00 4.81
2126 2260 2.519302 GGACATTGGCATCGGGGG 60.519 66.667 0.00 0.00 0.00 5.40
2127 2261 2.519302 GGGACATTGGCATCGGGG 60.519 66.667 0.00 0.00 0.00 5.73
2128 2262 1.825191 CTGGGACATTGGCATCGGG 60.825 63.158 0.00 0.00 38.20 5.14
2129 2263 2.484062 GCTGGGACATTGGCATCGG 61.484 63.158 0.00 0.00 38.20 4.18
2130 2264 2.827051 CGCTGGGACATTGGCATCG 61.827 63.158 0.00 0.00 38.20 3.84
2131 2265 0.820891 ATCGCTGGGACATTGGCATC 60.821 55.000 0.00 0.00 38.20 3.91
2132 2266 0.820891 GATCGCTGGGACATTGGCAT 60.821 55.000 0.00 0.00 38.20 4.40
2133 2267 1.451927 GATCGCTGGGACATTGGCA 60.452 57.895 0.00 0.00 38.20 4.92
2134 2268 1.153086 AGATCGCTGGGACATTGGC 60.153 57.895 0.00 0.00 38.20 4.52
2135 2269 0.467384 AGAGATCGCTGGGACATTGG 59.533 55.000 0.00 0.00 38.20 3.16
2136 2270 1.137675 TCAGAGATCGCTGGGACATTG 59.862 52.381 23.93 0.00 38.20 2.82
2137 2271 1.137872 GTCAGAGATCGCTGGGACATT 59.862 52.381 23.93 0.00 38.20 2.71
2138 2272 0.749649 GTCAGAGATCGCTGGGACAT 59.250 55.000 23.93 0.00 38.20 3.06
2139 2273 1.657751 CGTCAGAGATCGCTGGGACA 61.658 60.000 23.93 4.17 36.55 4.02
2140 2274 1.064946 CGTCAGAGATCGCTGGGAC 59.935 63.158 23.93 15.45 36.55 4.46
2141 2275 1.077716 TCGTCAGAGATCGCTGGGA 60.078 57.895 23.93 18.43 36.55 4.37
2142 2276 1.064946 GTCGTCAGAGATCGCTGGG 59.935 63.158 23.93 16.68 36.55 4.45
2143 2277 1.003331 GTAGTCGTCAGAGATCGCTGG 60.003 57.143 23.93 10.86 36.55 4.85
2144 2278 1.332465 CGTAGTCGTCAGAGATCGCTG 60.332 57.143 19.35 19.35 37.24 5.18
2145 2279 0.931702 CGTAGTCGTCAGAGATCGCT 59.068 55.000 0.00 0.00 0.00 4.93
2146 2280 0.928922 TCGTAGTCGTCAGAGATCGC 59.071 55.000 0.00 0.00 38.33 4.58
2147 2281 1.072024 CGTCGTAGTCGTCAGAGATCG 60.072 57.143 0.00 0.00 38.33 3.69
2148 2282 2.034675 GTCGTCGTAGTCGTCAGAGATC 60.035 54.545 0.00 0.00 40.43 2.75
2149 2283 1.925847 GTCGTCGTAGTCGTCAGAGAT 59.074 52.381 0.00 0.00 40.43 2.75
2150 2284 1.336240 TGTCGTCGTAGTCGTCAGAGA 60.336 52.381 0.00 0.00 40.43 3.10
2151 2285 1.066136 TGTCGTCGTAGTCGTCAGAG 58.934 55.000 0.00 0.00 40.43 3.35
2152 2286 1.392510 CATGTCGTCGTAGTCGTCAGA 59.607 52.381 0.00 0.00 39.99 3.27
2153 2287 1.529214 CCATGTCGTCGTAGTCGTCAG 60.529 57.143 0.00 0.00 39.99 3.51
2154 2288 0.445043 CCATGTCGTCGTAGTCGTCA 59.555 55.000 0.00 0.00 40.77 4.35
2155 2289 0.723414 TCCATGTCGTCGTAGTCGTC 59.277 55.000 0.00 0.00 40.43 4.20
2156 2290 0.445436 GTCCATGTCGTCGTAGTCGT 59.555 55.000 0.00 0.00 40.43 4.34
2157 2291 0.725686 AGTCCATGTCGTCGTAGTCG 59.274 55.000 0.00 0.00 41.01 4.18
2158 2292 3.558829 TCATAGTCCATGTCGTCGTAGTC 59.441 47.826 0.00 0.00 35.96 2.59
2159 2293 3.538591 TCATAGTCCATGTCGTCGTAGT 58.461 45.455 0.00 0.00 35.96 2.73
2160 2294 3.058846 CCTCATAGTCCATGTCGTCGTAG 60.059 52.174 0.00 0.00 35.96 3.51
2161 2295 2.876550 CCTCATAGTCCATGTCGTCGTA 59.123 50.000 0.00 0.00 35.96 3.43
2162 2296 1.676529 CCTCATAGTCCATGTCGTCGT 59.323 52.381 0.00 0.00 35.96 4.34
2163 2297 1.676529 ACCTCATAGTCCATGTCGTCG 59.323 52.381 0.00 0.00 35.96 5.12
2164 2298 3.119101 ACAACCTCATAGTCCATGTCGTC 60.119 47.826 0.00 0.00 35.96 4.20
2165 2299 2.832129 ACAACCTCATAGTCCATGTCGT 59.168 45.455 0.00 0.00 35.96 4.34
2166 2300 3.119137 TGACAACCTCATAGTCCATGTCG 60.119 47.826 0.00 0.00 38.75 4.35
2167 2301 4.184629 GTGACAACCTCATAGTCCATGTC 58.815 47.826 0.00 0.00 35.96 3.06
2168 2302 3.055094 GGTGACAACCTCATAGTCCATGT 60.055 47.826 0.00 0.00 43.84 3.21
2169 2303 3.535561 GGTGACAACCTCATAGTCCATG 58.464 50.000 0.00 0.00 43.84 3.66
2170 2304 2.168521 CGGTGACAACCTCATAGTCCAT 59.831 50.000 0.00 0.00 45.17 3.41
2171 2305 1.548719 CGGTGACAACCTCATAGTCCA 59.451 52.381 0.00 0.00 45.17 4.02
2172 2306 1.134788 CCGGTGACAACCTCATAGTCC 60.135 57.143 0.00 0.00 45.17 3.85
2173 2307 1.822990 TCCGGTGACAACCTCATAGTC 59.177 52.381 0.00 0.00 45.17 2.59
2174 2308 1.549170 GTCCGGTGACAACCTCATAGT 59.451 52.381 0.00 0.00 45.17 2.12
2175 2309 1.469251 CGTCCGGTGACAACCTCATAG 60.469 57.143 0.00 0.00 45.17 2.23
2176 2310 0.528924 CGTCCGGTGACAACCTCATA 59.471 55.000 0.00 0.00 45.17 2.15
2177 2311 1.183030 TCGTCCGGTGACAACCTCAT 61.183 55.000 0.00 0.00 45.17 2.90
2178 2312 1.829096 TCGTCCGGTGACAACCTCA 60.829 57.895 0.00 0.00 45.17 3.86
2179 2313 1.372623 GTCGTCCGGTGACAACCTC 60.373 63.158 19.97 0.00 45.17 3.85
2180 2314 0.538057 TAGTCGTCCGGTGACAACCT 60.538 55.000 24.49 11.41 45.17 3.50
2181 2315 0.387750 GTAGTCGTCCGGTGACAACC 60.388 60.000 24.49 12.25 41.85 3.77
2182 2316 0.595095 AGTAGTCGTCCGGTGACAAC 59.405 55.000 24.49 4.54 41.85 3.32
2183 2317 0.877071 GAGTAGTCGTCCGGTGACAA 59.123 55.000 24.49 0.00 41.85 3.18
2184 2318 1.293963 CGAGTAGTCGTCCGGTGACA 61.294 60.000 24.49 12.39 41.85 3.58
2185 2319 1.016130 TCGAGTAGTCGTCCGGTGAC 61.016 60.000 18.99 18.05 46.85 3.67
2186 2320 0.320683 TTCGAGTAGTCGTCCGGTGA 60.321 55.000 18.99 0.00 46.85 4.02
2187 2321 0.518636 TTTCGAGTAGTCGTCCGGTG 59.481 55.000 18.99 0.00 46.85 4.94
2188 2322 1.131883 CATTTCGAGTAGTCGTCCGGT 59.868 52.381 18.99 0.90 46.85 5.28
2189 2323 1.399440 TCATTTCGAGTAGTCGTCCGG 59.601 52.381 18.99 0.00 46.85 5.14
2190 2324 2.706273 CTCATTTCGAGTAGTCGTCCG 58.294 52.381 18.99 7.33 46.85 4.79
2200 2334 6.472715 GAGCTAATGGTCCACTCATTTCGAG 61.473 48.000 0.00 0.00 39.92 4.04
2201 2335 3.197766 AGCTAATGGTCCACTCATTTCGA 59.802 43.478 0.00 0.00 36.40 3.71
2202 2336 3.535561 AGCTAATGGTCCACTCATTTCG 58.464 45.455 0.00 0.00 36.40 3.46
2203 2337 4.775236 AGAGCTAATGGTCCACTCATTTC 58.225 43.478 9.29 0.00 41.26 2.17
2204 2338 4.472833 AGAGAGCTAATGGTCCACTCATTT 59.527 41.667 9.29 0.00 41.26 2.32
2205 2339 4.036518 AGAGAGCTAATGGTCCACTCATT 58.963 43.478 9.29 0.00 41.26 2.57
2206 2340 3.387374 CAGAGAGCTAATGGTCCACTCAT 59.613 47.826 9.29 0.00 41.26 2.90
2207 2341 2.762887 CAGAGAGCTAATGGTCCACTCA 59.237 50.000 9.29 0.00 41.26 3.41
2208 2342 2.482839 GCAGAGAGCTAATGGTCCACTC 60.483 54.545 0.00 0.00 41.26 3.51
2209 2343 1.484240 GCAGAGAGCTAATGGTCCACT 59.516 52.381 0.00 0.00 41.26 4.00
2210 2344 1.804372 CGCAGAGAGCTAATGGTCCAC 60.804 57.143 0.00 0.00 41.26 4.02
2211 2345 0.461548 CGCAGAGAGCTAATGGTCCA 59.538 55.000 0.00 0.00 41.26 4.02
2212 2346 0.878086 GCGCAGAGAGCTAATGGTCC 60.878 60.000 0.30 0.00 41.26 4.46
2213 2347 0.103937 AGCGCAGAGAGCTAATGGTC 59.896 55.000 11.47 0.00 44.05 4.02
2214 2348 0.179089 CAGCGCAGAGAGCTAATGGT 60.179 55.000 11.47 0.00 44.06 3.55
2215 2349 0.879400 CCAGCGCAGAGAGCTAATGG 60.879 60.000 11.47 0.00 44.06 3.16
2216 2350 1.497223 GCCAGCGCAGAGAGCTAATG 61.497 60.000 11.47 0.00 44.06 1.90
2217 2351 1.227497 GCCAGCGCAGAGAGCTAAT 60.227 57.895 11.47 0.00 44.06 1.73
2218 2352 2.185350 GCCAGCGCAGAGAGCTAA 59.815 61.111 11.47 0.00 44.06 3.09
2219 2353 4.198890 CGCCAGCGCAGAGAGCTA 62.199 66.667 11.47 0.00 44.06 3.32
2242 2376 3.591254 AAACCCGAGAGTCGCCTGC 62.591 63.158 0.00 0.00 38.82 4.85
2243 2377 1.446272 GAAACCCGAGAGTCGCCTG 60.446 63.158 0.00 0.00 38.82 4.85
2244 2378 2.971452 GAAACCCGAGAGTCGCCT 59.029 61.111 0.00 0.00 38.82 5.52
2245 2379 2.506438 CGAAACCCGAGAGTCGCC 60.506 66.667 0.00 0.00 41.76 5.54
2247 2381 2.506438 GGCGAAACCCGAGAGTCG 60.506 66.667 0.00 0.00 41.76 4.18
2248 2382 0.458669 TATGGCGAAACCCGAGAGTC 59.541 55.000 0.00 0.00 41.76 3.36
2249 2383 1.068741 GATATGGCGAAACCCGAGAGT 59.931 52.381 0.00 0.00 41.76 3.24
2250 2384 1.341531 AGATATGGCGAAACCCGAGAG 59.658 52.381 0.00 0.00 41.76 3.20
2251 2385 1.068588 CAGATATGGCGAAACCCGAGA 59.931 52.381 0.00 0.00 41.76 4.04
2252 2386 1.502231 CAGATATGGCGAAACCCGAG 58.498 55.000 0.00 0.00 41.76 4.63
2253 2387 0.105964 CCAGATATGGCGAAACCCGA 59.894 55.000 0.00 0.00 41.76 5.14
2254 2388 1.507141 GCCAGATATGGCGAAACCCG 61.507 60.000 16.94 0.00 45.79 5.28
2255 2389 2.331265 GCCAGATATGGCGAAACCC 58.669 57.895 16.94 0.00 45.79 4.11
2263 2397 2.357517 GACGGCGGCCAGATATGG 60.358 66.667 20.71 0.69 0.00 2.74
2264 2398 2.734723 CGACGGCGGCCAGATATG 60.735 66.667 20.71 3.63 0.00 1.78
2276 2410 2.509336 GAGACCACATGCCGACGG 60.509 66.667 10.29 10.29 0.00 4.79
2277 2411 1.807165 CTGAGACCACATGCCGACG 60.807 63.158 0.00 0.00 0.00 5.12
2278 2412 1.448540 CCTGAGACCACATGCCGAC 60.449 63.158 0.00 0.00 0.00 4.79
2279 2413 1.913262 ACCTGAGACCACATGCCGA 60.913 57.895 0.00 0.00 0.00 5.54
2280 2414 1.742880 CACCTGAGACCACATGCCG 60.743 63.158 0.00 0.00 0.00 5.69
2281 2415 0.957395 CACACCTGAGACCACATGCC 60.957 60.000 0.00 0.00 0.00 4.40
2282 2416 0.957395 CCACACCTGAGACCACATGC 60.957 60.000 0.00 0.00 0.00 4.06
2283 2417 0.957395 GCCACACCTGAGACCACATG 60.957 60.000 0.00 0.00 0.00 3.21
2284 2418 1.376466 GCCACACCTGAGACCACAT 59.624 57.895 0.00 0.00 0.00 3.21
2285 2419 2.828868 GCCACACCTGAGACCACA 59.171 61.111 0.00 0.00 0.00 4.17
2286 2420 2.357517 CGCCACACCTGAGACCAC 60.358 66.667 0.00 0.00 0.00 4.16
2287 2421 3.625897 CCGCCACACCTGAGACCA 61.626 66.667 0.00 0.00 0.00 4.02
2288 2422 4.394712 CCCGCCACACCTGAGACC 62.395 72.222 0.00 0.00 0.00 3.85
2289 2423 4.394712 CCCCGCCACACCTGAGAC 62.395 72.222 0.00 0.00 0.00 3.36
2290 2424 4.954118 ACCCCGCCACACCTGAGA 62.954 66.667 0.00 0.00 0.00 3.27
2291 2425 4.394712 GACCCCGCCACACCTGAG 62.395 72.222 0.00 0.00 0.00 3.35
2294 2428 4.326227 TAGGACCCCGCCACACCT 62.326 66.667 0.00 0.00 35.11 4.00
2295 2429 3.782443 CTAGGACCCCGCCACACC 61.782 72.222 0.00 0.00 0.00 4.16
2296 2430 3.782443 CCTAGGACCCCGCCACAC 61.782 72.222 1.05 0.00 0.00 3.82
2304 2438 4.862823 AGCGAGCCCCTAGGACCC 62.863 72.222 11.48 0.00 33.47 4.46
2305 2439 3.541713 CAGCGAGCCCCTAGGACC 61.542 72.222 11.48 0.00 33.47 4.46
2306 2440 3.541713 CCAGCGAGCCCCTAGGAC 61.542 72.222 11.48 1.37 33.47 3.85
2319 2453 2.359230 ACTTCTTCCAGCGCCAGC 60.359 61.111 2.29 0.00 45.58 4.85
2320 2454 0.886490 AACACTTCTTCCAGCGCCAG 60.886 55.000 2.29 0.00 0.00 4.85
2321 2455 0.394938 TAACACTTCTTCCAGCGCCA 59.605 50.000 2.29 0.00 0.00 5.69
2322 2456 1.739067 ATAACACTTCTTCCAGCGCC 58.261 50.000 2.29 0.00 0.00 6.53
2323 2457 4.119862 TCATATAACACTTCTTCCAGCGC 58.880 43.478 0.00 0.00 0.00 5.92
2324 2458 4.747108 CCTCATATAACACTTCTTCCAGCG 59.253 45.833 0.00 0.00 0.00 5.18
2325 2459 5.755861 GTCCTCATATAACACTTCTTCCAGC 59.244 44.000 0.00 0.00 0.00 4.85
2326 2460 7.118496 AGTCCTCATATAACACTTCTTCCAG 57.882 40.000 0.00 0.00 0.00 3.86
2327 2461 7.496346 AAGTCCTCATATAACACTTCTTCCA 57.504 36.000 0.00 0.00 0.00 3.53
2328 2462 8.915036 TCTAAGTCCTCATATAACACTTCTTCC 58.085 37.037 0.00 0.00 0.00 3.46
2329 2463 9.959749 CTCTAAGTCCTCATATAACACTTCTTC 57.040 37.037 0.00 0.00 0.00 2.87
2330 2464 9.702253 TCTCTAAGTCCTCATATAACACTTCTT 57.298 33.333 0.00 0.00 0.00 2.52
2331 2465 9.875708 ATCTCTAAGTCCTCATATAACACTTCT 57.124 33.333 0.00 0.00 0.00 2.85
2333 2467 9.647918 TGATCTCTAAGTCCTCATATAACACTT 57.352 33.333 0.00 0.00 0.00 3.16
2334 2468 9.647918 TTGATCTCTAAGTCCTCATATAACACT 57.352 33.333 0.00 0.00 0.00 3.55
2340 2474 9.829507 CTTTGTTTGATCTCTAAGTCCTCATAT 57.170 33.333 0.00 0.00 0.00 1.78
2341 2475 9.035890 TCTTTGTTTGATCTCTAAGTCCTCATA 57.964 33.333 0.00 0.00 0.00 2.15
2342 2476 7.911651 TCTTTGTTTGATCTCTAAGTCCTCAT 58.088 34.615 0.00 0.00 0.00 2.90
2343 2477 7.303182 TCTTTGTTTGATCTCTAAGTCCTCA 57.697 36.000 0.00 0.00 0.00 3.86
2344 2478 8.785329 ATTCTTTGTTTGATCTCTAAGTCCTC 57.215 34.615 0.00 0.00 0.00 3.71
2345 2479 9.579932 AAATTCTTTGTTTGATCTCTAAGTCCT 57.420 29.630 0.00 0.00 0.00 3.85
2346 2480 9.617975 CAAATTCTTTGTTTGATCTCTAAGTCC 57.382 33.333 0.00 0.00 38.51 3.85
2362 2496 6.402983 CGAGGAATGGAGAGACAAATTCTTTG 60.403 42.308 0.00 0.00 45.95 2.77
2363 2497 5.645497 CGAGGAATGGAGAGACAAATTCTTT 59.355 40.000 0.00 0.00 33.22 2.52
2364 2498 5.181748 CGAGGAATGGAGAGACAAATTCTT 58.818 41.667 0.00 0.00 33.22 2.52
2365 2499 4.383552 CCGAGGAATGGAGAGACAAATTCT 60.384 45.833 0.00 0.00 37.23 2.40
2366 2500 3.873952 CCGAGGAATGGAGAGACAAATTC 59.126 47.826 0.00 0.00 0.00 2.17
2367 2501 3.370953 CCCGAGGAATGGAGAGACAAATT 60.371 47.826 0.00 0.00 0.00 1.82
2368 2502 2.171448 CCCGAGGAATGGAGAGACAAAT 59.829 50.000 0.00 0.00 0.00 2.32
2369 2503 1.555075 CCCGAGGAATGGAGAGACAAA 59.445 52.381 0.00 0.00 0.00 2.83
2370 2504 1.195115 CCCGAGGAATGGAGAGACAA 58.805 55.000 0.00 0.00 0.00 3.18
2371 2505 1.330655 GCCCGAGGAATGGAGAGACA 61.331 60.000 0.00 0.00 0.00 3.41
2372 2506 1.443828 GCCCGAGGAATGGAGAGAC 59.556 63.158 0.00 0.00 0.00 3.36
2373 2507 2.127869 CGCCCGAGGAATGGAGAGA 61.128 63.158 0.00 0.00 0.00 3.10
2374 2508 2.419198 CGCCCGAGGAATGGAGAG 59.581 66.667 0.00 0.00 0.00 3.20
2375 2509 3.154473 CCGCCCGAGGAATGGAGA 61.154 66.667 0.00 0.00 0.00 3.71
2376 2510 4.918201 GCCGCCCGAGGAATGGAG 62.918 72.222 0.00 0.00 0.00 3.86
2428 2562 4.002506 CCAAAAACGGCTGCCCCC 62.003 66.667 14.12 0.00 0.00 5.40
2429 2563 4.002506 CCCAAAAACGGCTGCCCC 62.003 66.667 14.12 0.00 0.00 5.80
2430 2564 4.680237 GCCCAAAAACGGCTGCCC 62.680 66.667 14.12 0.00 43.48 5.36
2432 2566 3.783478 AACGCCCAAAAACGGCTGC 62.783 57.895 0.00 0.00 44.73 5.25
2433 2567 1.948635 CAACGCCCAAAAACGGCTG 60.949 57.895 0.00 0.00 44.73 4.85
2434 2568 2.415426 CAACGCCCAAAAACGGCT 59.585 55.556 0.00 0.00 44.73 5.52
2435 2569 2.660224 CCAACGCCCAAAAACGGC 60.660 61.111 0.00 0.00 43.38 5.68
2436 2570 2.660224 GCCAACGCCCAAAAACGG 60.660 61.111 0.00 0.00 0.00 4.44
2437 2571 3.027449 CGCCAACGCCCAAAAACG 61.027 61.111 0.00 0.00 0.00 3.60
2438 2572 2.660224 CCGCCAACGCCCAAAAAC 60.660 61.111 0.00 0.00 38.22 2.43
2439 2573 3.917760 CCCGCCAACGCCCAAAAA 61.918 61.111 0.00 0.00 38.22 1.94
2452 2586 3.474570 ATCTGACAGCTCCCCCGC 61.475 66.667 0.00 0.00 0.00 6.13
2453 2587 2.060383 TCATCTGACAGCTCCCCCG 61.060 63.158 0.00 0.00 0.00 5.73
2454 2588 1.524482 GTCATCTGACAGCTCCCCC 59.476 63.158 5.46 0.00 44.18 5.40
2455 2589 1.142748 CGTCATCTGACAGCTCCCC 59.857 63.158 10.69 0.00 44.99 4.81
2456 2590 0.102120 CTCGTCATCTGACAGCTCCC 59.898 60.000 10.69 0.00 44.99 4.30
2457 2591 0.102120 CCTCGTCATCTGACAGCTCC 59.898 60.000 10.69 0.00 44.99 4.70
2458 2592 1.065401 CTCCTCGTCATCTGACAGCTC 59.935 57.143 10.69 0.00 44.99 4.09
2459 2593 1.102154 CTCCTCGTCATCTGACAGCT 58.898 55.000 10.69 0.00 44.99 4.24
2460 2594 0.102120 CCTCCTCGTCATCTGACAGC 59.898 60.000 10.69 0.00 44.99 4.40
2461 2595 0.102120 GCCTCCTCGTCATCTGACAG 59.898 60.000 10.69 0.00 44.99 3.51
2462 2596 1.657751 CGCCTCCTCGTCATCTGACA 61.658 60.000 10.69 0.00 44.99 3.58
2463 2597 1.064946 CGCCTCCTCGTCATCTGAC 59.935 63.158 0.07 0.07 41.47 3.51
2464 2598 2.775856 GCGCCTCCTCGTCATCTGA 61.776 63.158 0.00 0.00 0.00 3.27
2465 2599 2.279120 GCGCCTCCTCGTCATCTG 60.279 66.667 0.00 0.00 0.00 2.90
2466 2600 3.532155 GGCGCCTCCTCGTCATCT 61.532 66.667 22.15 0.00 33.72 2.90
2467 2601 4.593864 GGGCGCCTCCTCGTCATC 62.594 72.222 28.56 0.41 35.49 2.92
2501 2635 1.658673 GGGATCTACGGTGGCGTAG 59.341 63.158 0.00 0.00 42.10 3.51
2502 2636 1.829533 GGGGATCTACGGTGGCGTA 60.830 63.158 0.00 0.00 0.00 4.42
2503 2637 3.152400 GGGGATCTACGGTGGCGT 61.152 66.667 0.00 0.00 0.00 5.68
2504 2638 3.151710 TGGGGATCTACGGTGGCG 61.152 66.667 0.00 0.00 0.00 5.69
2505 2639 2.504519 GTGGGGATCTACGGTGGC 59.495 66.667 0.00 0.00 0.00 5.01
2506 2640 2.812499 CGTGGGGATCTACGGTGG 59.188 66.667 8.97 0.00 42.87 4.61
2510 2644 2.812499 CCACCGTGGGGATCTACG 59.188 66.667 9.99 9.62 45.54 3.51
2519 2653 2.536997 GATGAAGTCCCCCACCGTGG 62.537 65.000 10.95 10.95 37.25 4.94
2520 2654 1.078426 GATGAAGTCCCCCACCGTG 60.078 63.158 0.00 0.00 0.00 4.94
2521 2655 2.656069 CGATGAAGTCCCCCACCGT 61.656 63.158 0.00 0.00 0.00 4.83
2522 2656 2.186903 CGATGAAGTCCCCCACCG 59.813 66.667 0.00 0.00 0.00 4.94
2523 2657 2.124695 GCGATGAAGTCCCCCACC 60.125 66.667 0.00 0.00 0.00 4.61
2524 2658 1.745489 GTGCGATGAAGTCCCCCAC 60.745 63.158 0.00 0.00 0.00 4.61
2525 2659 1.918293 AGTGCGATGAAGTCCCCCA 60.918 57.895 0.00 0.00 0.00 4.96
2526 2660 1.450312 CAGTGCGATGAAGTCCCCC 60.450 63.158 0.00 0.00 0.00 5.40
2527 2661 1.450312 CCAGTGCGATGAAGTCCCC 60.450 63.158 0.00 0.00 0.00 4.81
2528 2662 2.109126 GCCAGTGCGATGAAGTCCC 61.109 63.158 0.00 0.00 0.00 4.46
2529 2663 0.175760 TAGCCAGTGCGATGAAGTCC 59.824 55.000 0.00 0.00 44.33 3.85
2530 2664 1.281899 GTAGCCAGTGCGATGAAGTC 58.718 55.000 0.00 0.00 44.33 3.01
2531 2665 0.608130 TGTAGCCAGTGCGATGAAGT 59.392 50.000 0.00 0.00 44.33 3.01
2532 2666 1.863454 GATGTAGCCAGTGCGATGAAG 59.137 52.381 0.00 0.00 44.33 3.02
2533 2667 1.802508 CGATGTAGCCAGTGCGATGAA 60.803 52.381 0.00 0.00 44.33 2.57
2534 2668 0.249031 CGATGTAGCCAGTGCGATGA 60.249 55.000 0.00 0.00 44.33 2.92
2535 2669 1.825285 GCGATGTAGCCAGTGCGATG 61.825 60.000 0.00 0.00 44.33 3.84
2536 2670 1.592669 GCGATGTAGCCAGTGCGAT 60.593 57.895 0.00 0.00 44.33 4.58
2537 2671 2.202743 GCGATGTAGCCAGTGCGA 60.203 61.111 0.00 0.00 44.33 5.10
2554 2688 4.860881 TCCCTAGCCAGCCCTCGG 62.861 72.222 0.00 0.00 0.00 4.63
2555 2689 3.230245 CTCCCTAGCCAGCCCTCG 61.230 72.222 0.00 0.00 0.00 4.63
2556 2690 2.846754 CCTCCCTAGCCAGCCCTC 60.847 72.222 0.00 0.00 0.00 4.30
2557 2691 3.700350 ACCTCCCTAGCCAGCCCT 61.700 66.667 0.00 0.00 0.00 5.19
2558 2692 3.164977 GACCTCCCTAGCCAGCCC 61.165 72.222 0.00 0.00 0.00 5.19
2559 2693 3.541713 CGACCTCCCTAGCCAGCC 61.542 72.222 0.00 0.00 0.00 4.85
2560 2694 3.541713 CCGACCTCCCTAGCCAGC 61.542 72.222 0.00 0.00 0.00 4.85
2561 2695 3.541713 GCCGACCTCCCTAGCCAG 61.542 72.222 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.