Multiple sequence alignment - TraesCS5A01G125400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G125400 chr5A 100.000 3776 0 0 1 3776 275648551 275652326 0.000000e+00 6974.0
1 TraesCS5A01G125400 chr5A 97.552 286 5 2 3275 3560 29181213 29180930 4.380000e-134 488.0
2 TraesCS5A01G125400 chr5D 93.880 2157 59 20 862 2995 212452622 212454728 0.000000e+00 3184.0
3 TraesCS5A01G125400 chr5D 90.743 875 51 11 3 868 212451508 212452361 0.000000e+00 1140.0
4 TraesCS5A01G125400 chr5D 96.241 266 5 3 3016 3278 212455046 212455309 7.490000e-117 431.0
5 TraesCS5A01G125400 chr5D 98.925 93 1 0 3550 3642 212455305 212455397 2.330000e-37 167.0
6 TraesCS5A01G125400 chr5B 94.211 1192 39 11 2104 3278 226433186 226434364 0.000000e+00 1792.0
7 TraesCS5A01G125400 chr5B 94.386 1140 39 8 770 1901 226431564 226432686 0.000000e+00 1727.0
8 TraesCS5A01G125400 chr5B 91.423 513 32 7 3 512 226429182 226429685 0.000000e+00 693.0
9 TraesCS5A01G125400 chr5B 97.569 288 6 1 3277 3564 669690978 669691264 3.390000e-135 492.0
10 TraesCS5A01G125400 chr5B 93.258 267 11 2 512 778 226429807 226430066 1.650000e-103 387.0
11 TraesCS5A01G125400 chr5B 92.547 161 9 1 1901 2061 226432722 226432879 1.060000e-55 228.0
12 TraesCS5A01G125400 chr5B 98.837 86 1 0 3552 3637 226434362 226434447 1.820000e-33 154.0
13 TraesCS5A01G125400 chr5B 100.000 33 0 0 2075 2107 226432867 226432899 1.130000e-05 62.1
14 TraesCS5A01G125400 chr6A 98.577 281 4 0 3271 3551 133802833 133803113 7.280000e-137 497.0
15 TraesCS5A01G125400 chr3B 98.917 277 3 0 3274 3550 696324260 696324536 2.620000e-136 496.0
16 TraesCS5A01G125400 chr2B 97.902 286 5 1 3267 3551 635083322 635083607 9.420000e-136 494.0
17 TraesCS5A01G125400 chr2B 97.895 285 5 1 3277 3560 481659863 481660147 3.390000e-135 492.0
18 TraesCS5A01G125400 chr3A 97.880 283 6 0 3272 3554 22785802 22785520 1.220000e-134 490.0
19 TraesCS5A01G125400 chr3A 96.992 133 4 0 3643 3775 742791589 742791721 1.360000e-54 224.0
20 TraesCS5A01G125400 chr7B 97.849 279 6 0 3277 3555 474288957 474289235 2.040000e-132 483.0
21 TraesCS5A01G125400 chr1B 95.425 306 7 7 3246 3551 38599016 38599314 7.340000e-132 481.0
22 TraesCS5A01G125400 chr7A 97.761 134 3 0 3642 3775 64840229 64840362 8.160000e-57 231.0
23 TraesCS5A01G125400 chr1A 96.269 134 5 0 3642 3775 504941065 504941198 1.770000e-53 220.0
24 TraesCS5A01G125400 chr6D 94.776 134 7 0 3642 3775 318812992 318812859 3.820000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G125400 chr5A 275648551 275652326 3775 False 6974.000000 6974 100.000000 1 3776 1 chr5A.!!$F1 3775
1 TraesCS5A01G125400 chr5D 212451508 212455397 3889 False 1230.500000 3184 94.947250 3 3642 4 chr5D.!!$F1 3639
2 TraesCS5A01G125400 chr5B 226429182 226434447 5265 False 720.442857 1792 94.951714 3 3637 7 chr5B.!!$F2 3634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 894 1.225745 GTGAGATTGCCGCGTTTCG 60.226 57.895 4.92 0.0 38.08 3.46 F
2045 4003 0.036010 AACCTACTGCGCATGCTTCT 60.036 50.000 12.24 0.0 43.34 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 4497 0.106708 AACAGTGGAGTCGCATGTGT 59.893 50.0 6.09 0.00 0.00 3.72 R
3683 6266 0.028770 TGCCGTTTCAGAAAGCGTTG 59.971 50.0 13.37 4.57 37.39 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 6.753279 GGTGAAAAGTACCTTGTTTTTACACC 59.247 38.462 12.13 13.75 35.13 4.16
82 83 9.438228 TTGTTTTTACACCGACATAGATCATTA 57.562 29.630 0.00 0.00 0.00 1.90
96 97 9.770097 ACATAGATCATTATGTGTCTGTAAAGG 57.230 33.333 6.78 0.07 41.46 3.11
260 261 7.776618 TCTGTTAAAATCCTACAGACTCTCA 57.223 36.000 0.00 0.00 42.31 3.27
310 311 8.709386 TTTCTCTATTCATTTCTCTTTCCTCG 57.291 34.615 0.00 0.00 0.00 4.63
330 331 8.919777 TCCTCGACATCACTAAAATCTCTATA 57.080 34.615 0.00 0.00 0.00 1.31
411 413 3.944015 CCTTATTTTGGGCAGAGTCTCAG 59.056 47.826 1.94 0.00 0.00 3.35
477 480 7.394359 AGTTGATTACTTTCACACCAATATGCT 59.606 33.333 0.00 0.00 31.29 3.79
649 777 3.366679 GCACAAAATCAGTGATGTCCCTG 60.367 47.826 6.34 0.00 39.30 4.45
664 792 3.843619 TGTCCCTGACAAATCATACTGGA 59.156 43.478 0.00 0.00 39.78 3.86
666 794 3.843619 TCCCTGACAAATCATACTGGACA 59.156 43.478 0.00 0.00 33.22 4.02
721 849 6.801539 TTCTTCATACGTGCATTTCTTTCT 57.198 33.333 0.00 0.00 0.00 2.52
729 857 9.559958 CATACGTGCATTTCTTTCTCTAAATTT 57.440 29.630 0.00 0.00 0.00 1.82
732 860 8.784043 ACGTGCATTTCTTTCTCTAAATTTAGT 58.216 29.630 21.69 0.06 32.61 2.24
766 894 1.225745 GTGAGATTGCCGCGTTTCG 60.226 57.895 4.92 0.00 38.08 3.46
782 2416 4.854611 CGTTTCGCATTAAATTTTCCACG 58.145 39.130 0.00 0.00 0.00 4.94
826 2467 3.623960 TGAGTACTCCAAAACAAACACCG 59.376 43.478 20.11 0.00 0.00 4.94
921 2828 2.364972 AAAGGAGAACAACCCACAGG 57.635 50.000 0.00 0.00 40.04 4.00
925 2832 2.243736 AGGAGAACAACCCACAGGAAAA 59.756 45.455 0.00 0.00 36.73 2.29
988 2901 2.357637 CCCAACTATAAATGCACACCCG 59.642 50.000 0.00 0.00 0.00 5.28
1022 2935 4.150454 CGCCTCCTCCTCCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
1023 2936 2.370633 GCCTCCTCCTCCCTCCTT 59.629 66.667 0.00 0.00 0.00 3.36
1024 2937 1.764454 GCCTCCTCCTCCCTCCTTC 60.764 68.421 0.00 0.00 0.00 3.46
1025 2938 1.074850 CCTCCTCCTCCCTCCTTCC 60.075 68.421 0.00 0.00 0.00 3.46
1163 3082 2.021931 CTGCCGCGCGAGATTTTC 59.978 61.111 34.63 11.02 0.00 2.29
1348 3267 0.731855 GTTCGTAGGCGCTTTCTCGT 60.732 55.000 7.64 0.00 38.14 4.18
1597 3519 3.117474 CCTCCTCCCTTCTTTTAATCCCC 60.117 52.174 0.00 0.00 0.00 4.81
1651 3573 2.160417 GGCTTGTGAGTTCGATTTCTGG 59.840 50.000 0.00 0.00 0.00 3.86
2018 3976 3.487544 GGAATACCAAATCTTCGCTGCAC 60.488 47.826 0.00 0.00 35.97 4.57
2022 3980 0.792640 CAAATCTTCGCTGCACTCGT 59.207 50.000 0.00 0.00 0.00 4.18
2045 4003 0.036010 AACCTACTGCGCATGCTTCT 60.036 50.000 12.24 0.00 43.34 2.85
2049 4007 1.938577 CTACTGCGCATGCTTCTTCAT 59.061 47.619 12.24 0.00 43.34 2.57
2050 4008 0.731417 ACTGCGCATGCTTCTTCATC 59.269 50.000 12.24 0.00 43.34 2.92
2051 4009 0.730840 CTGCGCATGCTTCTTCATCA 59.269 50.000 12.24 0.11 43.34 3.07
2052 4010 0.730840 TGCGCATGCTTCTTCATCAG 59.269 50.000 17.13 0.00 43.34 2.90
2053 4011 0.731417 GCGCATGCTTCTTCATCAGT 59.269 50.000 17.13 0.00 38.39 3.41
2054 4012 1.131883 GCGCATGCTTCTTCATCAGTT 59.868 47.619 17.13 0.00 38.39 3.16
2055 4013 2.352651 GCGCATGCTTCTTCATCAGTTA 59.647 45.455 17.13 0.00 38.39 2.24
2056 4014 3.003068 GCGCATGCTTCTTCATCAGTTAT 59.997 43.478 17.13 0.00 38.39 1.89
2057 4015 4.497006 GCGCATGCTTCTTCATCAGTTATT 60.497 41.667 17.13 0.00 38.39 1.40
2058 4016 4.968181 CGCATGCTTCTTCATCAGTTATTG 59.032 41.667 17.13 0.00 0.00 1.90
2059 4017 5.220719 CGCATGCTTCTTCATCAGTTATTGA 60.221 40.000 17.13 0.00 40.85 2.57
2060 4018 9.786002 GCGCATGCTTCTTCATCAGTTATTGAT 62.786 40.741 17.13 0.00 41.95 2.57
2061 4019 7.201145 GCATGCTTCTTCATCAGTTATTGATT 58.799 34.615 11.37 0.00 44.14 2.57
2062 4020 7.705325 GCATGCTTCTTCATCAGTTATTGATTT 59.295 33.333 11.37 0.00 44.14 2.17
2063 4021 9.234384 CATGCTTCTTCATCAGTTATTGATTTC 57.766 33.333 0.00 0.00 44.14 2.17
2064 4022 7.765307 TGCTTCTTCATCAGTTATTGATTTCC 58.235 34.615 0.00 0.00 44.14 3.13
2065 4023 7.148018 TGCTTCTTCATCAGTTATTGATTTCCC 60.148 37.037 0.00 0.00 44.14 3.97
2066 4024 7.067981 GCTTCTTCATCAGTTATTGATTTCCCT 59.932 37.037 0.00 0.00 44.14 4.20
2067 4025 9.618890 CTTCTTCATCAGTTATTGATTTCCCTA 57.381 33.333 0.00 0.00 44.14 3.53
2068 4026 9.973661 TTCTTCATCAGTTATTGATTTCCCTAA 57.026 29.630 0.00 0.00 44.14 2.69
2069 4027 9.973661 TCTTCATCAGTTATTGATTTCCCTAAA 57.026 29.630 0.00 0.00 44.14 1.85
2107 4068 4.846779 TGTTTTCCTTGGCATGAAGTAC 57.153 40.909 0.00 5.21 0.00 2.73
2116 4367 5.123979 CCTTGGCATGAAGTACTACTTTTCC 59.876 44.000 0.00 3.72 38.80 3.13
2121 4372 5.163814 GCATGAAGTACTACTTTTCCAGCAG 60.164 44.000 0.00 0.00 38.80 4.24
2188 4439 4.142026 CCCCATGGATATGCTGCAATATTG 60.142 45.833 15.22 11.27 32.79 1.90
2230 4482 2.234913 ATCGCCCGTTACCACCTGAC 62.235 60.000 0.00 0.00 0.00 3.51
2240 4492 4.753610 CGTTACCACCTGACGATAGATAGA 59.246 45.833 0.00 0.00 38.99 1.98
2241 4493 5.107026 CGTTACCACCTGACGATAGATAGAG 60.107 48.000 0.00 0.00 38.99 2.43
2242 4494 3.150767 ACCACCTGACGATAGATAGAGC 58.849 50.000 0.00 0.00 41.38 4.09
2243 4495 2.490115 CCACCTGACGATAGATAGAGCC 59.510 54.545 0.00 0.00 41.38 4.70
2244 4496 2.490115 CACCTGACGATAGATAGAGCCC 59.510 54.545 0.00 0.00 41.38 5.19
2245 4497 2.108425 ACCTGACGATAGATAGAGCCCA 59.892 50.000 0.00 0.00 41.38 5.36
2258 4514 3.127533 GCCCACACATGCGACTCC 61.128 66.667 0.00 0.00 0.00 3.85
2423 4679 1.230635 CCGACCCTGACACTTTGCAG 61.231 60.000 0.00 0.00 0.00 4.41
2449 4705 2.061028 CCTGCTGATTTGCGTTTTTCC 58.939 47.619 0.00 0.00 35.36 3.13
2450 4706 2.061028 CTGCTGATTTGCGTTTTTCCC 58.939 47.619 0.00 0.00 35.36 3.97
2458 4714 3.047735 CGTTTTTCCCCCACAGCC 58.952 61.111 0.00 0.00 0.00 4.85
2497 4753 7.999450 AATTATGGCCATTCATTTGTTGTTT 57.001 28.000 26.37 0.00 0.00 2.83
2533 4789 2.821969 CAGGAATCCACCAAAGGAGTTG 59.178 50.000 0.61 0.00 41.90 3.16
2536 4792 2.206576 ATCCACCAAAGGAGTTGCTC 57.793 50.000 0.00 0.00 41.90 4.26
2666 4931 0.108756 GTGGACTTACTGAGCGGGAC 60.109 60.000 0.00 0.00 0.00 4.46
2953 5233 6.460781 AGAATTGTTATCCTTGTGTCGTGTA 58.539 36.000 0.00 0.00 0.00 2.90
2960 5240 1.432514 CTTGTGTCGTGTATGCTGCT 58.567 50.000 0.00 0.00 0.00 4.24
2961 5241 1.127397 CTTGTGTCGTGTATGCTGCTG 59.873 52.381 0.00 0.00 0.00 4.41
2962 5242 1.291184 TGTGTCGTGTATGCTGCTGC 61.291 55.000 8.89 8.89 40.20 5.25
2984 5264 2.355797 GCAATGCAATGCAGACGTG 58.644 52.632 21.74 9.99 43.65 4.49
3023 5603 0.466189 CCGTTGGCTGGCCATATCTT 60.466 55.000 15.41 0.00 46.64 2.40
3263 5846 6.687105 CGTGGTATTGTTTAGCTTATTTCTGC 59.313 38.462 0.00 0.00 0.00 4.26
3278 5861 0.037882 TCTGCGCTGTTTCTCTGAGG 60.038 55.000 9.73 0.00 0.00 3.86
3279 5862 1.633852 CTGCGCTGTTTCTCTGAGGC 61.634 60.000 9.73 0.00 0.00 4.70
3280 5863 1.375268 GCGCTGTTTCTCTGAGGCT 60.375 57.895 0.00 0.00 0.00 4.58
3281 5864 1.633852 GCGCTGTTTCTCTGAGGCTG 61.634 60.000 0.00 1.91 0.00 4.85
3282 5865 1.018226 CGCTGTTTCTCTGAGGCTGG 61.018 60.000 4.59 0.00 0.00 4.85
3283 5866 0.036022 GCTGTTTCTCTGAGGCTGGT 59.964 55.000 4.59 0.00 0.00 4.00
3284 5867 1.943507 GCTGTTTCTCTGAGGCTGGTC 60.944 57.143 4.59 0.00 0.00 4.02
3285 5868 1.345741 CTGTTTCTCTGAGGCTGGTCA 59.654 52.381 4.59 0.00 0.00 4.02
3286 5869 1.980765 TGTTTCTCTGAGGCTGGTCAT 59.019 47.619 4.59 0.00 0.00 3.06
3287 5870 3.173151 TGTTTCTCTGAGGCTGGTCATA 58.827 45.455 4.59 0.00 0.00 2.15
3288 5871 3.196469 TGTTTCTCTGAGGCTGGTCATAG 59.804 47.826 4.59 0.00 0.00 2.23
3289 5872 2.836636 TCTCTGAGGCTGGTCATAGT 57.163 50.000 4.59 0.00 0.00 2.12
3290 5873 2.382882 TCTCTGAGGCTGGTCATAGTG 58.617 52.381 4.59 0.00 0.00 2.74
3291 5874 1.411977 CTCTGAGGCTGGTCATAGTGG 59.588 57.143 0.00 0.00 0.00 4.00
3292 5875 0.467384 CTGAGGCTGGTCATAGTGGG 59.533 60.000 0.00 0.00 0.00 4.61
3293 5876 0.982852 TGAGGCTGGTCATAGTGGGG 60.983 60.000 0.00 0.00 0.00 4.96
3294 5877 0.691078 GAGGCTGGTCATAGTGGGGA 60.691 60.000 0.00 0.00 0.00 4.81
3295 5878 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
3296 5879 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
3297 5880 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
3298 5881 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3299 5882 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3300 5883 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
3301 5884 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
3302 5885 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
3303 5886 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
3304 5887 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
3305 5888 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
3306 5889 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
3307 5890 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
3308 5891 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
3309 5892 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
3310 5893 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
3311 5894 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
3312 5895 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
3313 5896 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
3314 5897 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
3315 5898 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
3316 5899 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
3317 5900 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
3353 5936 9.263446 AGTTTATGTTACTACCTTCATAGTGGA 57.737 33.333 0.00 0.00 36.09 4.02
3358 5941 8.234136 TGTTACTACCTTCATAGTGGATAGTG 57.766 38.462 0.00 0.00 36.09 2.74
3359 5942 7.837689 TGTTACTACCTTCATAGTGGATAGTGT 59.162 37.037 0.00 0.00 36.09 3.55
3360 5943 6.963083 ACTACCTTCATAGTGGATAGTGTC 57.037 41.667 0.00 0.00 34.02 3.67
3361 5944 6.432581 ACTACCTTCATAGTGGATAGTGTCA 58.567 40.000 0.00 0.00 34.02 3.58
3362 5945 7.069986 ACTACCTTCATAGTGGATAGTGTCAT 58.930 38.462 0.00 0.00 34.02 3.06
3363 5946 8.225416 ACTACCTTCATAGTGGATAGTGTCATA 58.775 37.037 0.00 0.00 34.02 2.15
3364 5947 7.531857 ACCTTCATAGTGGATAGTGTCATAG 57.468 40.000 0.00 0.00 0.00 2.23
3365 5948 6.495181 ACCTTCATAGTGGATAGTGTCATAGG 59.505 42.308 0.00 0.00 0.00 2.57
3366 5949 6.495181 CCTTCATAGTGGATAGTGTCATAGGT 59.505 42.308 0.00 0.00 0.00 3.08
3367 5950 6.901081 TCATAGTGGATAGTGTCATAGGTG 57.099 41.667 0.00 0.00 0.00 4.00
3368 5951 6.373759 TCATAGTGGATAGTGTCATAGGTGT 58.626 40.000 0.00 0.00 0.00 4.16
3369 5952 6.265422 TCATAGTGGATAGTGTCATAGGTGTG 59.735 42.308 0.00 0.00 0.00 3.82
3370 5953 3.706594 AGTGGATAGTGTCATAGGTGTGG 59.293 47.826 0.00 0.00 0.00 4.17
3371 5954 3.451178 GTGGATAGTGTCATAGGTGTGGT 59.549 47.826 0.00 0.00 0.00 4.16
3372 5955 4.647853 GTGGATAGTGTCATAGGTGTGGTA 59.352 45.833 0.00 0.00 0.00 3.25
3373 5956 5.128171 GTGGATAGTGTCATAGGTGTGGTAA 59.872 44.000 0.00 0.00 0.00 2.85
3374 5957 5.128171 TGGATAGTGTCATAGGTGTGGTAAC 59.872 44.000 0.00 0.00 0.00 2.50
3393 5976 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
3394 5977 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
3395 5978 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
3403 5986 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
3404 5987 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
3405 5988 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
3406 5989 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
3407 5990 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
3418 6001 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
3419 6002 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
3420 6003 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
3421 6004 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
3422 6005 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
3423 6006 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
3424 6007 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
3425 6008 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
3426 6009 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
3427 6010 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
3428 6011 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
3429 6012 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
3430 6013 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
3431 6014 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
3432 6015 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
3433 6016 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
3434 6017 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
3435 6018 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
3436 6019 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
3437 6020 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
3438 6021 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
3439 6022 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
3469 6052 9.702253 TTATGTTACTCTATTTGTCTCTCTCCT 57.298 33.333 0.00 0.00 0.00 3.69
3470 6053 7.633193 TGTTACTCTATTTGTCTCTCTCCTC 57.367 40.000 0.00 0.00 0.00 3.71
3471 6054 7.175797 TGTTACTCTATTTGTCTCTCTCCTCA 58.824 38.462 0.00 0.00 0.00 3.86
3472 6055 7.836685 TGTTACTCTATTTGTCTCTCTCCTCAT 59.163 37.037 0.00 0.00 0.00 2.90
3473 6056 8.691797 GTTACTCTATTTGTCTCTCTCCTCATT 58.308 37.037 0.00 0.00 0.00 2.57
3474 6057 9.922477 TTACTCTATTTGTCTCTCTCCTCATTA 57.078 33.333 0.00 0.00 0.00 1.90
3475 6058 8.830915 ACTCTATTTGTCTCTCTCCTCATTAA 57.169 34.615 0.00 0.00 0.00 1.40
3476 6059 8.691797 ACTCTATTTGTCTCTCTCCTCATTAAC 58.308 37.037 0.00 0.00 0.00 2.01
3477 6060 8.830915 TCTATTTGTCTCTCTCCTCATTAACT 57.169 34.615 0.00 0.00 0.00 2.24
3478 6061 9.922477 TCTATTTGTCTCTCTCCTCATTAACTA 57.078 33.333 0.00 0.00 0.00 2.24
3479 6062 9.959749 CTATTTGTCTCTCTCCTCATTAACTAC 57.040 37.037 0.00 0.00 0.00 2.73
3480 6063 8.602472 ATTTGTCTCTCTCCTCATTAACTACT 57.398 34.615 0.00 0.00 0.00 2.57
3481 6064 8.423906 TTTGTCTCTCTCCTCATTAACTACTT 57.576 34.615 0.00 0.00 0.00 2.24
3482 6065 7.397892 TGTCTCTCTCCTCATTAACTACTTG 57.602 40.000 0.00 0.00 0.00 3.16
3483 6066 6.127591 TGTCTCTCTCCTCATTAACTACTTGC 60.128 42.308 0.00 0.00 0.00 4.01
3484 6067 5.361285 TCTCTCTCCTCATTAACTACTTGCC 59.639 44.000 0.00 0.00 0.00 4.52
3485 6068 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
3486 6069 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
3487 6070 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
3488 6071 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
3489 6072 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
3490 6073 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
3491 6074 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
3492 6075 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
3493 6076 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
3494 6077 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
3495 6078 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
3496 6079 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
3497 6080 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
3498 6081 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
3499 6082 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
3500 6083 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
3501 6084 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
3502 6085 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
3503 6086 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
3504 6087 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
3505 6088 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
3506 6089 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
3507 6090 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
3508 6091 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
3509 6092 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
3510 6093 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
3511 6094 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
3512 6095 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
3513 6096 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
3514 6097 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
3515 6098 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
3516 6099 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
3517 6100 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
3518 6101 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
3519 6102 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
3520 6103 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
3521 6104 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
3522 6105 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
3523 6106 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
3524 6107 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
3525 6108 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
3526 6109 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
3527 6110 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
3528 6111 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
3529 6112 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
3530 6113 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
3531 6114 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
3532 6115 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
3533 6116 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
3534 6117 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
3536 6119 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
3537 6120 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
3538 6121 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
3539 6122 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
3540 6123 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
3541 6124 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
3542 6125 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
3543 6126 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
3544 6127 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
3545 6128 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
3546 6129 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
3547 6130 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
3548 6131 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
3549 6132 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
3550 6133 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.00 0.00 0.00 4.58
3551 6134 0.467384 CTCCCACTATGACCAGCCTG 59.533 60.000 0.00 0.00 0.00 4.85
3552 6135 0.042581 TCCCACTATGACCAGCCTGA 59.957 55.000 0.00 0.00 0.00 3.86
3553 6136 0.467384 CCCACTATGACCAGCCTGAG 59.533 60.000 0.00 0.00 0.00 3.35
3597 6180 1.690633 GGGAGGAGGCACTGATCCA 60.691 63.158 0.00 0.00 41.55 3.41
3642 6225 3.120095 CCCCGTGTTCCGAGAAATTTTAC 60.120 47.826 0.00 0.00 39.56 2.01
3643 6226 3.423907 CCCGTGTTCCGAGAAATTTTACG 60.424 47.826 9.79 9.79 39.56 3.18
3644 6227 3.429543 CCGTGTTCCGAGAAATTTTACGA 59.570 43.478 15.79 0.00 39.56 3.43
3645 6228 4.380290 CGTGTTCCGAGAAATTTTACGAC 58.620 43.478 15.79 9.65 39.56 4.34
3646 6229 4.380290 GTGTTCCGAGAAATTTTACGACG 58.620 43.478 15.79 0.00 0.00 5.12
3647 6230 3.120923 TGTTCCGAGAAATTTTACGACGC 60.121 43.478 15.79 8.18 0.00 5.19
3648 6231 1.650153 TCCGAGAAATTTTACGACGCG 59.350 47.619 3.53 3.53 0.00 6.01
3649 6232 1.387756 CCGAGAAATTTTACGACGCGT 59.612 47.619 13.85 13.85 44.35 6.01
3650 6233 2.159934 CCGAGAAATTTTACGACGCGTT 60.160 45.455 15.53 0.00 41.54 4.84
3651 6234 3.463127 CGAGAAATTTTACGACGCGTTT 58.537 40.909 15.53 6.34 41.54 3.60
3652 6235 3.291069 CGAGAAATTTTACGACGCGTTTG 59.709 43.478 15.53 12.46 41.54 2.93
3653 6236 3.547601 AGAAATTTTACGACGCGTTTGG 58.452 40.909 15.53 8.91 41.54 3.28
3654 6237 3.002553 AGAAATTTTACGACGCGTTTGGT 59.997 39.130 15.53 14.81 41.54 3.67
3655 6238 3.337301 AATTTTACGACGCGTTTGGTT 57.663 38.095 15.53 0.00 41.54 3.67
3656 6239 2.088338 TTTTACGACGCGTTTGGTTG 57.912 45.000 15.53 1.94 41.54 3.77
3657 6240 0.304098 TTTACGACGCGTTTGGTTGG 59.696 50.000 15.53 0.00 41.54 3.77
3658 6241 1.497223 TTACGACGCGTTTGGTTGGG 61.497 55.000 15.53 0.00 41.54 4.12
3659 6242 4.676586 CGACGCGTTTGGTTGGGC 62.677 66.667 15.53 0.00 0.00 5.36
3663 6246 3.597728 GCGTTTGGTTGGGCGGAA 61.598 61.111 0.00 0.00 0.00 4.30
3664 6247 3.121019 CGTTTGGTTGGGCGGAAA 58.879 55.556 0.00 0.00 0.00 3.13
3665 6248 1.437986 CGTTTGGTTGGGCGGAAAA 59.562 52.632 0.00 0.00 0.00 2.29
3666 6249 0.596341 CGTTTGGTTGGGCGGAAAAG 60.596 55.000 0.00 0.00 0.00 2.27
3667 6250 0.462375 GTTTGGTTGGGCGGAAAAGT 59.538 50.000 0.00 0.00 0.00 2.66
3668 6251 0.747852 TTTGGTTGGGCGGAAAAGTC 59.252 50.000 0.00 0.00 0.00 3.01
3669 6252 1.448922 TTGGTTGGGCGGAAAAGTCG 61.449 55.000 0.00 0.00 0.00 4.18
3675 6258 3.723348 GCGGAAAAGTCGCGGCTT 61.723 61.111 22.34 22.34 43.71 4.35
3676 6259 2.474712 CGGAAAAGTCGCGGCTTC 59.525 61.111 28.16 15.60 0.00 3.86
3677 6260 2.868196 GGAAAAGTCGCGGCTTCC 59.132 61.111 28.16 21.20 0.00 3.46
3678 6261 2.687805 GGAAAAGTCGCGGCTTCCC 61.688 63.158 28.16 25.08 32.71 3.97
3679 6262 1.964373 GAAAAGTCGCGGCTTCCCA 60.964 57.895 28.16 0.00 0.00 4.37
3680 6263 1.512156 GAAAAGTCGCGGCTTCCCAA 61.512 55.000 28.16 0.00 0.00 4.12
3681 6264 1.104577 AAAAGTCGCGGCTTCCCAAA 61.105 50.000 28.16 0.00 0.00 3.28
3682 6265 1.792118 AAAGTCGCGGCTTCCCAAAC 61.792 55.000 28.16 3.18 0.00 2.93
3683 6266 3.733960 GTCGCGGCTTCCCAAACC 61.734 66.667 1.90 0.00 0.00 3.27
3684 6267 4.257654 TCGCGGCTTCCCAAACCA 62.258 61.111 6.13 0.00 0.00 3.67
3685 6268 3.291383 CGCGGCTTCCCAAACCAA 61.291 61.111 0.00 0.00 0.00 3.67
3686 6269 2.338620 GCGGCTTCCCAAACCAAC 59.661 61.111 0.00 0.00 0.00 3.77
3687 6270 2.642700 CGGCTTCCCAAACCAACG 59.357 61.111 0.00 0.00 0.00 4.10
3688 6271 2.338620 GGCTTCCCAAACCAACGC 59.661 61.111 0.00 0.00 0.00 4.84
3689 6272 2.200337 GGCTTCCCAAACCAACGCT 61.200 57.895 0.00 0.00 0.00 5.07
3690 6273 1.739667 GCTTCCCAAACCAACGCTT 59.260 52.632 0.00 0.00 0.00 4.68
3691 6274 0.104120 GCTTCCCAAACCAACGCTTT 59.896 50.000 0.00 0.00 0.00 3.51
3692 6275 1.868109 GCTTCCCAAACCAACGCTTTC 60.868 52.381 0.00 0.00 0.00 2.62
3693 6276 1.681264 CTTCCCAAACCAACGCTTTCT 59.319 47.619 0.00 0.00 0.00 2.52
3694 6277 1.028905 TCCCAAACCAACGCTTTCTG 58.971 50.000 0.00 0.00 0.00 3.02
3695 6278 1.028905 CCCAAACCAACGCTTTCTGA 58.971 50.000 0.00 0.00 0.00 3.27
3696 6279 1.407258 CCCAAACCAACGCTTTCTGAA 59.593 47.619 0.00 0.00 0.00 3.02
3697 6280 2.159170 CCCAAACCAACGCTTTCTGAAA 60.159 45.455 2.44 2.44 0.00 2.69
3698 6281 2.857748 CCAAACCAACGCTTTCTGAAAC 59.142 45.455 0.00 0.00 0.00 2.78
3699 6282 2.468532 AACCAACGCTTTCTGAAACG 57.531 45.000 17.34 17.34 0.00 3.60
3700 6283 0.661020 ACCAACGCTTTCTGAAACGG 59.339 50.000 20.61 10.39 0.00 4.44
3701 6284 0.660300 CCAACGCTTTCTGAAACGGC 60.660 55.000 20.61 13.87 0.00 5.68
3702 6285 0.028770 CAACGCTTTCTGAAACGGCA 59.971 50.000 20.61 0.00 0.00 5.69
3703 6286 0.951558 AACGCTTTCTGAAACGGCAT 59.048 45.000 20.61 4.29 0.00 4.40
3704 6287 0.517316 ACGCTTTCTGAAACGGCATC 59.483 50.000 20.61 0.00 0.00 3.91
3705 6288 0.179189 CGCTTTCTGAAACGGCATCC 60.179 55.000 12.84 0.00 0.00 3.51
3706 6289 0.881118 GCTTTCTGAAACGGCATCCA 59.119 50.000 8.87 0.00 0.00 3.41
3707 6290 1.135575 GCTTTCTGAAACGGCATCCAG 60.136 52.381 8.87 0.00 0.00 3.86
3708 6291 0.881118 TTTCTGAAACGGCATCCAGC 59.119 50.000 0.00 0.00 44.65 4.85
3712 6295 1.169661 TGAAACGGCATCCAGCGTTT 61.170 50.000 8.34 8.34 45.53 3.60
3713 6296 0.729140 GAAACGGCATCCAGCGTTTG 60.729 55.000 12.52 0.00 44.12 2.93
3728 6311 2.518949 CGTTTGGTACGCATACTACGT 58.481 47.619 0.00 0.00 44.26 3.57
3729 6312 3.679725 CGTTTGGTACGCATACTACGTA 58.320 45.455 0.00 0.00 44.26 3.57
3730 6313 4.282068 CGTTTGGTACGCATACTACGTAT 58.718 43.478 0.00 0.00 46.52 3.06
3731 6314 4.734854 CGTTTGGTACGCATACTACGTATT 59.265 41.667 0.00 0.00 46.52 1.89
3732 6315 5.906838 CGTTTGGTACGCATACTACGTATTA 59.093 40.000 0.00 0.00 46.52 0.98
3733 6316 6.085458 CGTTTGGTACGCATACTACGTATTAG 59.915 42.308 0.00 0.00 46.52 1.73
3734 6317 5.611796 TGGTACGCATACTACGTATTAGG 57.388 43.478 0.00 0.00 46.52 2.69
3735 6318 5.063204 TGGTACGCATACTACGTATTAGGT 58.937 41.667 6.50 0.00 46.52 3.08
3736 6319 6.227522 TGGTACGCATACTACGTATTAGGTA 58.772 40.000 6.50 1.43 46.52 3.08
3737 6320 6.878923 TGGTACGCATACTACGTATTAGGTAT 59.121 38.462 6.50 3.55 46.52 2.73
3738 6321 7.064609 TGGTACGCATACTACGTATTAGGTATC 59.935 40.741 6.50 5.97 46.52 2.24
3739 6322 6.428385 ACGCATACTACGTATTAGGTATCC 57.572 41.667 6.50 0.00 43.02 2.59
3740 6323 5.063944 ACGCATACTACGTATTAGGTATCCG 59.936 44.000 12.06 12.06 43.02 4.18
3741 6324 5.063944 CGCATACTACGTATTAGGTATCCGT 59.936 44.000 7.50 0.00 35.68 4.69
3742 6325 6.253746 GCATACTACGTATTAGGTATCCGTG 58.746 44.000 6.50 0.00 33.32 4.94
3743 6326 6.128172 GCATACTACGTATTAGGTATCCGTGT 60.128 42.308 6.50 0.00 33.32 4.49
3744 6327 5.931441 ACTACGTATTAGGTATCCGTGTC 57.069 43.478 0.00 0.00 33.32 3.67
3745 6328 5.615289 ACTACGTATTAGGTATCCGTGTCT 58.385 41.667 0.00 0.00 33.32 3.41
3746 6329 6.058183 ACTACGTATTAGGTATCCGTGTCTT 58.942 40.000 0.00 0.00 33.32 3.01
3747 6330 5.841957 ACGTATTAGGTATCCGTGTCTTT 57.158 39.130 0.00 0.00 0.00 2.52
3748 6331 5.825507 ACGTATTAGGTATCCGTGTCTTTC 58.174 41.667 0.00 0.00 0.00 2.62
3749 6332 4.908156 CGTATTAGGTATCCGTGTCTTTCG 59.092 45.833 0.00 0.00 0.00 3.46
3750 6333 5.277490 CGTATTAGGTATCCGTGTCTTTCGA 60.277 44.000 0.00 0.00 0.00 3.71
3751 6334 5.786264 ATTAGGTATCCGTGTCTTTCGAT 57.214 39.130 0.00 0.00 0.00 3.59
3752 6335 6.889301 ATTAGGTATCCGTGTCTTTCGATA 57.111 37.500 0.00 0.00 0.00 2.92
3753 6336 4.564940 AGGTATCCGTGTCTTTCGATAC 57.435 45.455 0.00 0.00 0.00 2.24
3754 6337 3.949754 AGGTATCCGTGTCTTTCGATACA 59.050 43.478 7.99 0.00 31.44 2.29
3755 6338 4.583489 AGGTATCCGTGTCTTTCGATACAT 59.417 41.667 7.99 0.00 31.44 2.29
3756 6339 4.916249 GGTATCCGTGTCTTTCGATACATC 59.084 45.833 7.99 0.00 31.44 3.06
3775 6358 9.878599 GATACATCGATTCATAAAACCGAAAAT 57.121 29.630 0.00 0.00 32.84 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 6.370442 TGATCTATGTCGGTGTAAAAACAAGG 59.630 38.462 0.00 0.00 0.00 3.61
68 69 9.463443 TTTACAGACACATAATGATCTATGTCG 57.537 33.333 4.97 4.68 39.89 4.35
82 83 7.246171 ACATAGAAGACCTTTACAGACACAT 57.754 36.000 0.00 0.00 0.00 3.21
173 174 9.886132 AATCTTTAAACTATATTCACAGTCCGT 57.114 29.630 0.00 0.00 0.00 4.69
289 290 7.170393 TGTCGAGGAAAGAGAAATGAATAGA 57.830 36.000 0.00 0.00 0.00 1.98
292 293 6.314896 GTGATGTCGAGGAAAGAGAAATGAAT 59.685 38.462 0.00 0.00 0.00 2.57
310 311 9.494271 TTGCCATATAGAGATTTTAGTGATGTC 57.506 33.333 0.00 0.00 0.00 3.06
330 331 0.606401 CGTCAAGTGAGGGTTGCCAT 60.606 55.000 0.00 0.00 0.00 4.40
411 413 2.500229 TCTTCAACGATTTCACACCCC 58.500 47.619 0.00 0.00 0.00 4.95
459 462 5.789643 AACAAGCATATTGGTGTGAAAGT 57.210 34.783 0.00 0.00 0.00 2.66
703 831 9.559958 AAATTTAGAGAAAGAAATGCACGTATG 57.440 29.630 0.00 0.00 0.00 2.39
731 859 8.973378 GCAATCTCACAATCTTGATACTACTAC 58.027 37.037 0.00 0.00 0.00 2.73
732 860 8.144478 GGCAATCTCACAATCTTGATACTACTA 58.856 37.037 0.00 0.00 0.00 1.82
733 861 6.989169 GGCAATCTCACAATCTTGATACTACT 59.011 38.462 0.00 0.00 0.00 2.57
734 862 6.074088 CGGCAATCTCACAATCTTGATACTAC 60.074 42.308 0.00 0.00 0.00 2.73
766 894 8.682128 TTGTATCTTCGTGGAAAATTTAATGC 57.318 30.769 0.00 0.00 0.00 3.56
782 2416 9.155975 ACTCATTGGCGATATAATTGTATCTTC 57.844 33.333 17.11 10.81 0.00 2.87
793 2427 6.413783 TTTGGAGTACTCATTGGCGATATA 57.586 37.500 23.91 0.00 0.00 0.86
925 2832 2.038426 CCGCCCCATTTCTTTCCTTTTT 59.962 45.455 0.00 0.00 0.00 1.94
1022 2935 4.798682 GAGCGGGGAGGGAGGGAA 62.799 72.222 0.00 0.00 0.00 3.97
1348 3267 0.953471 CCCGAATGTTTGCTGTCCGA 60.953 55.000 0.00 0.00 0.00 4.55
1612 3534 1.343142 GCCAACAAGGGGAAAACGAAT 59.657 47.619 0.00 0.00 38.09 3.34
1670 3592 3.687572 CTGGAAGGAAAGCAATCATCG 57.312 47.619 0.00 0.00 0.00 3.84
1904 3862 0.164647 CAGAACGGAGCGCAAGAAAG 59.835 55.000 11.47 0.00 43.02 2.62
2018 3976 1.344942 GCGCAGTAGGTTCACACGAG 61.345 60.000 0.30 0.00 0.00 4.18
2022 3980 1.298157 GCATGCGCAGTAGGTTCACA 61.298 55.000 18.32 0.00 38.36 3.58
2071 4029 9.492973 CCAAGGAAAACATCAATAACTGATTTT 57.507 29.630 0.00 0.00 42.46 1.82
2072 4030 7.603784 GCCAAGGAAAACATCAATAACTGATTT 59.396 33.333 0.00 0.00 42.46 2.17
2073 4031 7.099120 GCCAAGGAAAACATCAATAACTGATT 58.901 34.615 0.00 0.00 42.46 2.57
2074 4032 6.211184 TGCCAAGGAAAACATCAATAACTGAT 59.789 34.615 0.00 0.00 46.25 2.90
2075 4033 5.538053 TGCCAAGGAAAACATCAATAACTGA 59.462 36.000 0.00 0.00 38.81 3.41
2076 4034 5.782047 TGCCAAGGAAAACATCAATAACTG 58.218 37.500 0.00 0.00 0.00 3.16
2077 4035 6.211184 TCATGCCAAGGAAAACATCAATAACT 59.789 34.615 0.00 0.00 0.00 2.24
2107 4068 1.728971 CTCGCACTGCTGGAAAAGTAG 59.271 52.381 0.00 0.00 43.78 2.57
2116 4367 1.089920 ATTAAAGCCTCGCACTGCTG 58.910 50.000 0.00 0.00 38.00 4.41
2121 4372 1.202031 CGACCAATTAAAGCCTCGCAC 60.202 52.381 0.00 0.00 0.00 5.34
2188 4439 7.274904 CGATTTATCATTCATTCATTCATGGGC 59.725 37.037 0.00 0.00 0.00 5.36
2230 4482 3.842820 CATGTGTGGGCTCTATCTATCG 58.157 50.000 0.00 0.00 0.00 2.92
2240 4492 2.046892 GAGTCGCATGTGTGGGCT 60.047 61.111 6.09 1.04 38.12 5.19
2241 4493 3.127533 GGAGTCGCATGTGTGGGC 61.128 66.667 6.09 0.00 38.12 5.36
2242 4494 2.034879 GTGGAGTCGCATGTGTGGG 61.035 63.158 6.09 0.00 39.47 4.61
2243 4495 1.004560 AGTGGAGTCGCATGTGTGG 60.005 57.895 6.09 0.00 0.00 4.17
2244 4496 0.601046 ACAGTGGAGTCGCATGTGTG 60.601 55.000 6.09 0.00 0.00 3.82
2245 4497 0.106708 AACAGTGGAGTCGCATGTGT 59.893 50.000 6.09 0.00 0.00 3.72
2367 4623 1.468520 CTGGGTACTTTGATGGCAACG 59.531 52.381 0.00 0.00 42.51 4.10
2423 4679 1.200020 ACGCAAATCAGCAGGTAAAGC 59.800 47.619 0.00 0.00 0.00 3.51
2433 4689 1.342819 TGGGGGAAAAACGCAAATCAG 59.657 47.619 0.00 0.00 0.00 2.90
2449 4705 1.001181 CAATCTTTTGTGGCTGTGGGG 59.999 52.381 0.00 0.00 0.00 4.96
2450 4706 1.606224 GCAATCTTTTGTGGCTGTGGG 60.606 52.381 0.00 0.00 35.17 4.61
2458 4714 6.817641 TGGCCATAATTAAGCAATCTTTTGTG 59.182 34.615 0.00 0.00 35.17 3.33
2497 4753 0.970640 TCCTGCCTGCGTAAGTACAA 59.029 50.000 0.00 0.00 41.68 2.41
2533 4789 3.009115 TGGTACTGCCCCTGGAGC 61.009 66.667 0.00 0.00 36.04 4.70
2666 4931 1.062587 GGTTTGTTCGCCATCATCTCG 59.937 52.381 0.00 0.00 0.00 4.04
2706 4971 6.084939 CGACAAAACAACACTAAACATGATCG 59.915 38.462 0.00 0.00 0.00 3.69
2984 5264 5.059161 ACGGAGTAAAAGAAAGTTACCACC 58.941 41.667 0.00 0.00 41.94 4.61
3023 5603 0.249120 CCATGCTGTACTCCGAACCA 59.751 55.000 0.00 0.00 0.00 3.67
3107 5687 1.069204 CTGTGTACTGTGTGTCCTGCT 59.931 52.381 0.00 0.00 0.00 4.24
3140 5720 1.856265 CTGAGAAAAGCCACCGTGCC 61.856 60.000 0.00 0.00 0.00 5.01
3200 5783 2.653115 GTTTCTTGGGCCAGCAGC 59.347 61.111 6.23 0.00 42.60 5.25
3263 5846 1.018226 CCAGCCTCAGAGAAACAGCG 61.018 60.000 0.00 0.00 0.00 5.18
3278 5861 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
3279 5862 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
3280 5863 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
3281 5864 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
3282 5865 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
3283 5866 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
3284 5867 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
3285 5868 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
3286 5869 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
3287 5870 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
3288 5871 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
3289 5872 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
3290 5873 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
3291 5874 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
3327 5910 9.263446 TCCACTATGAAGGTAGTAACATAAACT 57.737 33.333 0.00 0.00 33.29 2.66
3332 5915 8.861086 CACTATCCACTATGAAGGTAGTAACAT 58.139 37.037 0.00 0.00 33.29 2.71
3333 5916 7.837689 ACACTATCCACTATGAAGGTAGTAACA 59.162 37.037 0.00 0.00 33.29 2.41
3334 5917 8.235359 ACACTATCCACTATGAAGGTAGTAAC 57.765 38.462 0.00 0.00 33.29 2.50
3335 5918 8.057011 TGACACTATCCACTATGAAGGTAGTAA 58.943 37.037 0.00 0.00 33.29 2.24
3336 5919 7.580007 TGACACTATCCACTATGAAGGTAGTA 58.420 38.462 0.00 0.00 33.29 1.82
3337 5920 6.432581 TGACACTATCCACTATGAAGGTAGT 58.567 40.000 0.00 0.00 35.34 2.73
3338 5921 6.961360 TGACACTATCCACTATGAAGGTAG 57.039 41.667 0.00 0.00 0.00 3.18
3339 5922 7.670140 CCTATGACACTATCCACTATGAAGGTA 59.330 40.741 0.00 0.00 0.00 3.08
3340 5923 6.495181 CCTATGACACTATCCACTATGAAGGT 59.505 42.308 0.00 0.00 0.00 3.50
3341 5924 6.495181 ACCTATGACACTATCCACTATGAAGG 59.505 42.308 0.00 0.00 0.00 3.46
3342 5925 7.014711 ACACCTATGACACTATCCACTATGAAG 59.985 40.741 0.00 0.00 0.00 3.02
3343 5926 6.839134 ACACCTATGACACTATCCACTATGAA 59.161 38.462 0.00 0.00 0.00 2.57
3344 5927 6.265422 CACACCTATGACACTATCCACTATGA 59.735 42.308 0.00 0.00 0.00 2.15
3345 5928 6.450545 CACACCTATGACACTATCCACTATG 58.549 44.000 0.00 0.00 0.00 2.23
3346 5929 5.540337 CCACACCTATGACACTATCCACTAT 59.460 44.000 0.00 0.00 0.00 2.12
3347 5930 4.893524 CCACACCTATGACACTATCCACTA 59.106 45.833 0.00 0.00 0.00 2.74
3348 5931 3.706594 CCACACCTATGACACTATCCACT 59.293 47.826 0.00 0.00 0.00 4.00
3349 5932 3.451178 ACCACACCTATGACACTATCCAC 59.549 47.826 0.00 0.00 0.00 4.02
3350 5933 3.719871 ACCACACCTATGACACTATCCA 58.280 45.455 0.00 0.00 0.00 3.41
3351 5934 5.128171 TGTTACCACACCTATGACACTATCC 59.872 44.000 0.00 0.00 0.00 2.59
3352 5935 6.216801 TGTTACCACACCTATGACACTATC 57.783 41.667 0.00 0.00 0.00 2.08
3353 5936 6.808321 ATGTTACCACACCTATGACACTAT 57.192 37.500 0.00 0.00 35.03 2.12
3354 5937 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
3355 5938 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
3356 5939 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
3357 5940 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
3358 5941 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
3359 5942 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
3360 5943 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
3361 5944 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
3362 5945 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
3363 5946 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
3378 5961 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
3379 5962 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
3380 5963 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
3381 5964 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
3392 5975 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
3393 5976 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
3394 5977 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
3395 5978 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
3396 5979 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
3397 5980 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
3398 5981 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
3399 5982 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
3400 5983 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
3401 5984 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
3402 5985 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
3403 5986 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
3404 5987 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
3405 5988 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
3406 5989 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
3407 5990 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
3408 5991 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
3409 5992 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
3410 5993 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
3411 5994 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
3412 5995 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
3413 5996 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
3414 5997 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
3415 5998 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
3416 5999 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
3417 6000 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
3418 6001 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
3419 6002 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
3420 6003 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
3421 6004 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
3422 6005 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
3423 6006 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
3443 6026 9.702253 AGGAGAGAGACAAATAGAGTAACATAA 57.298 33.333 0.00 0.00 0.00 1.90
3444 6027 9.344772 GAGGAGAGAGACAAATAGAGTAACATA 57.655 37.037 0.00 0.00 0.00 2.29
3445 6028 7.836685 TGAGGAGAGAGACAAATAGAGTAACAT 59.163 37.037 0.00 0.00 0.00 2.71
3446 6029 7.175797 TGAGGAGAGAGACAAATAGAGTAACA 58.824 38.462 0.00 0.00 0.00 2.41
3447 6030 7.633193 TGAGGAGAGAGACAAATAGAGTAAC 57.367 40.000 0.00 0.00 0.00 2.50
3448 6031 8.830915 AATGAGGAGAGAGACAAATAGAGTAA 57.169 34.615 0.00 0.00 0.00 2.24
3449 6032 9.922477 TTAATGAGGAGAGAGACAAATAGAGTA 57.078 33.333 0.00 0.00 0.00 2.59
3450 6033 8.691797 GTTAATGAGGAGAGAGACAAATAGAGT 58.308 37.037 0.00 0.00 0.00 3.24
3451 6034 8.912988 AGTTAATGAGGAGAGAGACAAATAGAG 58.087 37.037 0.00 0.00 0.00 2.43
3452 6035 8.830915 AGTTAATGAGGAGAGAGACAAATAGA 57.169 34.615 0.00 0.00 0.00 1.98
3453 6036 9.959749 GTAGTTAATGAGGAGAGAGACAAATAG 57.040 37.037 0.00 0.00 0.00 1.73
3454 6037 9.702253 AGTAGTTAATGAGGAGAGAGACAAATA 57.298 33.333 0.00 0.00 0.00 1.40
3455 6038 8.602472 AGTAGTTAATGAGGAGAGAGACAAAT 57.398 34.615 0.00 0.00 0.00 2.32
3456 6039 8.307483 CAAGTAGTTAATGAGGAGAGAGACAAA 58.693 37.037 0.00 0.00 0.00 2.83
3457 6040 7.577807 GCAAGTAGTTAATGAGGAGAGAGACAA 60.578 40.741 0.00 0.00 0.00 3.18
3458 6041 6.127591 GCAAGTAGTTAATGAGGAGAGAGACA 60.128 42.308 0.00 0.00 0.00 3.41
3459 6042 6.270064 GCAAGTAGTTAATGAGGAGAGAGAC 58.730 44.000 0.00 0.00 0.00 3.36
3460 6043 5.361285 GGCAAGTAGTTAATGAGGAGAGAGA 59.639 44.000 0.00 0.00 0.00 3.10
3461 6044 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
3462 6045 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
3463 6046 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
3464 6047 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
3465 6048 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
3466 6049 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
3467 6050 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
3468 6051 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
3469 6052 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
3470 6053 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
3471 6054 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
3472 6055 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
3473 6056 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
3474 6057 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
3475 6058 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
3476 6059 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
3477 6060 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
3478 6061 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
3479 6062 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
3480 6063 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
3481 6064 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
3482 6065 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
3483 6066 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
3484 6067 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
3485 6068 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
3486 6069 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
3487 6070 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
3488 6071 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
3489 6072 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
3490 6073 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
3491 6074 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
3492 6075 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
3493 6076 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
3494 6077 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
3495 6078 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
3496 6079 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
3497 6080 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
3498 6081 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
3499 6082 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
3500 6083 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
3501 6084 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
3502 6085 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
3503 6086 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
3504 6087 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
3505 6088 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
3506 6089 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
3507 6090 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
3508 6091 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
3510 6093 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
3511 6094 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
3512 6095 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
3513 6096 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
3514 6097 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
3515 6098 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
3516 6099 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
3517 6100 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
3518 6101 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
3519 6102 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
3520 6103 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
3521 6104 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
3522 6105 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
3523 6106 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
3524 6107 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
3525 6108 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
3526 6109 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
3527 6110 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
3528 6111 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3529 6112 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3530 6113 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
3531 6114 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
3532 6115 0.467384 CAGGCTGGTCATAGTGGGAG 59.533 60.000 6.61 0.00 0.00 4.30
3533 6116 0.042581 TCAGGCTGGTCATAGTGGGA 59.957 55.000 15.73 0.00 0.00 4.37
3534 6117 0.467384 CTCAGGCTGGTCATAGTGGG 59.533 60.000 15.73 0.00 0.00 4.61
3535 6118 1.137872 GTCTCAGGCTGGTCATAGTGG 59.862 57.143 15.73 0.00 0.00 4.00
3536 6119 1.827344 TGTCTCAGGCTGGTCATAGTG 59.173 52.381 15.73 0.00 0.00 2.74
3537 6120 2.238084 TGTCTCAGGCTGGTCATAGT 57.762 50.000 15.73 0.00 0.00 2.12
3538 6121 2.762887 TCTTGTCTCAGGCTGGTCATAG 59.237 50.000 15.73 4.10 0.00 2.23
3539 6122 2.820178 TCTTGTCTCAGGCTGGTCATA 58.180 47.619 15.73 0.00 0.00 2.15
3540 6123 1.649321 TCTTGTCTCAGGCTGGTCAT 58.351 50.000 15.73 0.00 0.00 3.06
3541 6124 1.649321 ATCTTGTCTCAGGCTGGTCA 58.351 50.000 15.73 8.71 0.00 4.02
3542 6125 2.102252 CCTATCTTGTCTCAGGCTGGTC 59.898 54.545 15.73 6.14 0.00 4.02
3543 6126 2.114616 CCTATCTTGTCTCAGGCTGGT 58.885 52.381 15.73 0.00 0.00 4.00
3544 6127 2.102252 GTCCTATCTTGTCTCAGGCTGG 59.898 54.545 15.73 5.63 0.00 4.85
3545 6128 2.762887 TGTCCTATCTTGTCTCAGGCTG 59.237 50.000 8.58 8.58 0.00 4.85
3546 6129 3.107402 TGTCCTATCTTGTCTCAGGCT 57.893 47.619 0.00 0.00 0.00 4.58
3547 6130 3.791245 CTTGTCCTATCTTGTCTCAGGC 58.209 50.000 0.00 0.00 0.00 4.85
3548 6131 3.196469 TGCTTGTCCTATCTTGTCTCAGG 59.804 47.826 0.00 0.00 0.00 3.86
3549 6132 4.462508 TGCTTGTCCTATCTTGTCTCAG 57.537 45.455 0.00 0.00 0.00 3.35
3550 6133 4.467438 TGATGCTTGTCCTATCTTGTCTCA 59.533 41.667 0.00 0.00 0.00 3.27
3551 6134 5.016051 TGATGCTTGTCCTATCTTGTCTC 57.984 43.478 0.00 0.00 0.00 3.36
3552 6135 5.426689 TTGATGCTTGTCCTATCTTGTCT 57.573 39.130 0.00 0.00 0.00 3.41
3553 6136 5.008415 CCATTGATGCTTGTCCTATCTTGTC 59.992 44.000 0.00 0.00 0.00 3.18
3642 6225 4.676586 GCCCAACCAAACGCGTCG 62.677 66.667 14.44 6.98 0.00 5.12
3643 6226 4.676586 CGCCCAACCAAACGCGTC 62.677 66.667 14.44 0.00 39.78 5.19
3646 6229 2.630592 TTTTCCGCCCAACCAAACGC 62.631 55.000 0.00 0.00 0.00 4.84
3647 6230 0.596341 CTTTTCCGCCCAACCAAACG 60.596 55.000 0.00 0.00 0.00 3.60
3648 6231 0.462375 ACTTTTCCGCCCAACCAAAC 59.538 50.000 0.00 0.00 0.00 2.93
3649 6232 0.747852 GACTTTTCCGCCCAACCAAA 59.252 50.000 0.00 0.00 0.00 3.28
3650 6233 1.448922 CGACTTTTCCGCCCAACCAA 61.449 55.000 0.00 0.00 0.00 3.67
3651 6234 1.894756 CGACTTTTCCGCCCAACCA 60.895 57.895 0.00 0.00 0.00 3.67
3652 6235 2.951458 CGACTTTTCCGCCCAACC 59.049 61.111 0.00 0.00 0.00 3.77
3653 6236 2.254350 GCGACTTTTCCGCCCAAC 59.746 61.111 0.00 0.00 46.22 3.77
3659 6242 2.474712 GAAGCCGCGACTTTTCCG 59.525 61.111 9.60 0.00 0.00 4.30
3660 6243 2.687805 GGGAAGCCGCGACTTTTCC 61.688 63.158 9.60 14.39 38.66 3.13
3661 6244 1.512156 TTGGGAAGCCGCGACTTTTC 61.512 55.000 9.60 5.48 0.00 2.29
3662 6245 1.104577 TTTGGGAAGCCGCGACTTTT 61.105 50.000 9.60 0.00 0.00 2.27
3663 6246 1.527380 TTTGGGAAGCCGCGACTTT 60.527 52.632 9.60 0.00 0.00 2.66
3664 6247 2.112297 TTTGGGAAGCCGCGACTT 59.888 55.556 7.60 7.60 0.00 3.01
3665 6248 2.668550 GTTTGGGAAGCCGCGACT 60.669 61.111 8.23 0.00 0.00 4.18
3666 6249 3.733960 GGTTTGGGAAGCCGCGAC 61.734 66.667 8.23 0.00 0.00 5.19
3667 6250 3.776347 TTGGTTTGGGAAGCCGCGA 62.776 57.895 8.23 0.00 32.33 5.87
3668 6251 3.291383 TTGGTTTGGGAAGCCGCG 61.291 61.111 0.00 0.00 32.33 6.46
3669 6252 2.338620 GTTGGTTTGGGAAGCCGC 59.661 61.111 0.00 0.00 32.33 6.53
3670 6253 2.642700 CGTTGGTTTGGGAAGCCG 59.357 61.111 0.00 0.00 32.33 5.52
3671 6254 1.744320 AAGCGTTGGTTTGGGAAGCC 61.744 55.000 0.00 0.00 32.33 4.35
3672 6255 0.104120 AAAGCGTTGGTTTGGGAAGC 59.896 50.000 0.00 0.00 31.83 3.86
3673 6256 1.681264 AGAAAGCGTTGGTTTGGGAAG 59.319 47.619 0.00 0.00 33.25 3.46
3674 6257 1.407258 CAGAAAGCGTTGGTTTGGGAA 59.593 47.619 0.00 0.00 33.25 3.97
3675 6258 1.028905 CAGAAAGCGTTGGTTTGGGA 58.971 50.000 0.00 0.00 33.25 4.37
3676 6259 1.028905 TCAGAAAGCGTTGGTTTGGG 58.971 50.000 0.00 0.00 33.25 4.12
3677 6260 2.857748 GTTTCAGAAAGCGTTGGTTTGG 59.142 45.455 0.00 0.00 33.25 3.28
3678 6261 2.529894 CGTTTCAGAAAGCGTTGGTTTG 59.470 45.455 0.00 0.00 34.78 2.93
3679 6262 2.478879 CCGTTTCAGAAAGCGTTGGTTT 60.479 45.455 13.37 0.00 37.39 3.27
3680 6263 1.064952 CCGTTTCAGAAAGCGTTGGTT 59.935 47.619 13.37 0.00 37.39 3.67
3681 6264 0.661020 CCGTTTCAGAAAGCGTTGGT 59.339 50.000 13.37 0.00 37.39 3.67
3682 6265 0.660300 GCCGTTTCAGAAAGCGTTGG 60.660 55.000 13.37 5.78 37.39 3.77
3683 6266 0.028770 TGCCGTTTCAGAAAGCGTTG 59.971 50.000 13.37 4.57 37.39 4.10
3684 6267 0.951558 ATGCCGTTTCAGAAAGCGTT 59.048 45.000 13.37 0.00 37.39 4.84
3685 6268 0.517316 GATGCCGTTTCAGAAAGCGT 59.483 50.000 13.37 8.61 37.39 5.07
3686 6269 0.179189 GGATGCCGTTTCAGAAAGCG 60.179 55.000 0.00 3.66 38.64 4.68
3687 6270 0.881118 TGGATGCCGTTTCAGAAAGC 59.119 50.000 0.00 0.00 0.00 3.51
3688 6271 1.135575 GCTGGATGCCGTTTCAGAAAG 60.136 52.381 0.00 0.00 35.15 2.62
3689 6272 0.881118 GCTGGATGCCGTTTCAGAAA 59.119 50.000 0.00 0.00 35.15 2.52
3690 6273 1.298157 CGCTGGATGCCGTTTCAGAA 61.298 55.000 0.00 0.00 38.78 3.02
3691 6274 1.741401 CGCTGGATGCCGTTTCAGA 60.741 57.895 0.00 0.00 38.78 3.27
3692 6275 1.577328 AACGCTGGATGCCGTTTCAG 61.577 55.000 0.00 0.00 35.89 3.02
3693 6276 1.169661 AAACGCTGGATGCCGTTTCA 61.170 50.000 7.89 0.00 41.05 2.69
3694 6277 0.729140 CAAACGCTGGATGCCGTTTC 60.729 55.000 10.19 0.00 42.07 2.78
3695 6278 1.285641 CAAACGCTGGATGCCGTTT 59.714 52.632 7.89 7.89 43.45 3.60
3696 6279 2.953821 CAAACGCTGGATGCCGTT 59.046 55.556 0.00 0.00 39.00 4.44
3724 6307 8.375455 TCGAAAGACACGGATACCTAATACGTA 61.375 40.741 0.00 0.00 44.73 3.57
3725 6308 7.621095 TCGAAAGACACGGATACCTAATACGT 61.621 42.308 0.00 0.00 46.52 3.57
3726 6309 5.277490 TCGAAAGACACGGATACCTAATACG 60.277 44.000 0.00 0.00 41.18 3.06
3727 6310 6.064846 TCGAAAGACACGGATACCTAATAC 57.935 41.667 0.00 0.00 33.31 1.89
3728 6311 6.889301 ATCGAAAGACACGGATACCTAATA 57.111 37.500 0.00 0.00 46.97 0.98
3729 6312 5.786264 ATCGAAAGACACGGATACCTAAT 57.214 39.130 0.00 0.00 46.97 1.73
3730 6313 5.589855 TGTATCGAAAGACACGGATACCTAA 59.410 40.000 7.37 0.00 41.35 2.69
3731 6314 5.125356 TGTATCGAAAGACACGGATACCTA 58.875 41.667 7.37 0.00 41.35 3.08
3732 6315 3.949754 TGTATCGAAAGACACGGATACCT 59.050 43.478 7.37 0.00 41.35 3.08
3733 6316 4.297299 TGTATCGAAAGACACGGATACC 57.703 45.455 7.37 0.00 41.35 2.73
3749 6332 9.878599 ATTTTCGGTTTTATGAATCGATGTATC 57.121 29.630 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.