Multiple sequence alignment - TraesCS5A01G125200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G125200 chr5A 100.000 7637 0 0 1 7637 275110113 275102477 0.000000e+00 14103.0
1 TraesCS5A01G125200 chr5A 99.145 117 1 0 2297 2413 275107997 275107881 2.160000e-50 211.0
2 TraesCS5A01G125200 chr5A 88.750 160 17 1 2301 2459 130662421 130662580 2.170000e-45 195.0
3 TraesCS5A01G125200 chr5A 87.500 160 17 3 2301 2458 143736661 143736819 1.690000e-41 182.0
4 TraesCS5A01G125200 chr5A 87.629 97 12 0 7541 7637 258643009 258642913 6.260000e-21 113.0
5 TraesCS5A01G125200 chr5D 97.130 4773 86 17 2356 7092 212003943 211999186 0.000000e+00 8008.0
6 TraesCS5A01G125200 chr5D 97.074 1128 16 2 1169 2296 212004933 212003823 0.000000e+00 1884.0
7 TraesCS5A01G125200 chr5D 95.064 932 20 10 263 1176 212005882 212004959 0.000000e+00 1443.0
8 TraesCS5A01G125200 chr5D 91.039 491 33 5 7154 7634 211991375 211990886 0.000000e+00 652.0
9 TraesCS5A01G125200 chr5D 100.000 28 0 0 7206 7233 396825122 396825095 1.400000e-02 52.8
10 TraesCS5A01G125200 chr5B 97.698 3996 72 10 3160 7143 225534320 225530333 0.000000e+00 6852.0
11 TraesCS5A01G125200 chr5B 97.572 1112 23 2 1184 2295 225541683 225540576 0.000000e+00 1901.0
12 TraesCS5A01G125200 chr5B 95.147 886 23 2 2297 3164 225540754 225539871 0.000000e+00 1380.0
13 TraesCS5A01G125200 chr5B 93.232 857 18 13 266 1118 225542900 225542080 0.000000e+00 1225.0
14 TraesCS5A01G125200 chr5B 90.702 527 25 4 7127 7632 225530160 225529637 0.000000e+00 680.0
15 TraesCS5A01G125200 chr5B 88.339 283 29 3 2041 2320 191098340 191098621 3.410000e-88 337.0
16 TraesCS5A01G125200 chr5B 86.824 296 33 5 2028 2320 159610949 159611241 7.390000e-85 326.0
17 TraesCS5A01G125200 chr7A 96.183 262 9 1 2036 2297 193576691 193576431 1.970000e-115 427.0
18 TraesCS5A01G125200 chr7A 88.809 277 26 4 2045 2320 519203082 519203354 1.230000e-87 335.0
19 TraesCS5A01G125200 chr7A 90.909 143 12 1 2316 2457 501161239 501161097 2.810000e-44 191.0
20 TraesCS5A01G125200 chr7A 80.851 94 13 4 5465 5557 422486367 422486456 1.380000e-07 69.4
21 TraesCS5A01G125200 chr7A 85.938 64 7 2 5468 5530 628984749 628984687 4.950000e-07 67.6
22 TraesCS5A01G125200 chr6B 87.415 294 32 4 2030 2320 264685738 264685447 4.420000e-87 333.0
23 TraesCS5A01G125200 chr6B 86.824 296 34 4 2028 2320 102827320 102827613 7.390000e-85 326.0
24 TraesCS5A01G125200 chr6B 84.211 95 15 0 7541 7635 457551471 457551565 8.160000e-15 93.5
25 TraesCS5A01G125200 chr6B 84.483 58 7 2 7199 7254 182752280 182752337 1.000000e-03 56.5
26 TraesCS5A01G125200 chr3B 87.162 296 33 4 2028 2320 546755254 546755547 1.590000e-86 331.0
27 TraesCS5A01G125200 chr3B 89.308 159 14 3 2297 2453 587912748 587912591 6.050000e-46 196.0
28 TraesCS5A01G125200 chr2B 86.824 296 34 4 2028 2320 614064222 614064515 7.390000e-85 326.0
29 TraesCS5A01G125200 chr2B 78.322 143 21 9 5571 5709 388944896 388945032 4.910000e-12 84.2
30 TraesCS5A01G125200 chr3A 90.506 158 14 1 2297 2453 550722090 550721933 2.790000e-49 207.0
31 TraesCS5A01G125200 chr3A 86.792 159 19 2 2301 2458 489161422 489161265 7.880000e-40 176.0
32 TraesCS5A01G125200 chr2A 87.421 159 19 1 2301 2458 520320248 520320406 1.690000e-41 182.0
33 TraesCS5A01G125200 chr2A 86.792 159 20 1 2301 2458 73148869 73149027 7.880000e-40 176.0
34 TraesCS5A01G125200 chr2A 79.054 148 20 10 5571 5715 410694332 410694193 2.930000e-14 91.6
35 TraesCS5A01G125200 chr4A 92.381 105 8 0 995 1099 489426386 489426490 4.770000e-32 150.0
36 TraesCS5A01G125200 chr4A 86.598 97 13 0 7541 7637 310474579 310474675 2.910000e-19 108.0
37 TraesCS5A01G125200 chr4B 89.474 114 10 2 995 1108 130632839 130632728 7.990000e-30 143.0
38 TraesCS5A01G125200 chr4B 83.505 97 16 0 7541 7637 336444915 336444819 2.930000e-14 91.6
39 TraesCS5A01G125200 chr4D 88.596 114 11 2 995 1108 93081263 93081152 3.720000e-28 137.0
40 TraesCS5A01G125200 chr4D 93.103 58 3 1 5458 5514 116522203 116522146 4.910000e-12 84.2
41 TraesCS5A01G125200 chr2D 87.129 101 13 0 7537 7637 244635515 244635415 1.740000e-21 115.0
42 TraesCS5A01G125200 chr6D 87.629 97 12 0 7541 7637 155851872 155851968 6.260000e-21 113.0
43 TraesCS5A01G125200 chr6A 87.629 97 12 0 7541 7637 288017918 288017822 6.260000e-21 113.0
44 TraesCS5A01G125200 chr6A 86.598 97 13 0 7541 7637 297951362 297951458 2.910000e-19 108.0
45 TraesCS5A01G125200 chr6A 85.417 96 14 0 7542 7637 266661080 266660985 4.880000e-17 100.0
46 TraesCS5A01G125200 chr6A 94.286 35 2 0 7199 7233 68638625 68638659 4.000000e-03 54.7
47 TraesCS5A01G125200 chr1A 86.598 97 13 0 7541 7637 222971972 222971876 2.910000e-19 108.0
48 TraesCS5A01G125200 chr1A 86.364 88 12 0 7541 7628 200354245 200354158 6.310000e-16 97.1
49 TraesCS5A01G125200 chr7D 85.567 97 14 0 7541 7637 338750598 338750694 1.360000e-17 102.0
50 TraesCS5A01G125200 chr7D 100.000 28 0 0 7206 7233 170222273 170222246 1.400000e-02 52.8
51 TraesCS5A01G125200 chr3D 85.567 97 14 0 7541 7637 242191738 242191834 1.360000e-17 102.0
52 TraesCS5A01G125200 chr3D 73.538 325 58 20 5456 5773 394612143 394611840 1.750000e-16 99.0
53 TraesCS5A01G125200 chr3D 87.179 78 10 0 7541 7618 175557968 175557891 1.060000e-13 89.8
54 TraesCS5A01G125200 chr3D 82.828 99 11 5 7541 7637 214004759 214004665 4.910000e-12 84.2
55 TraesCS5A01G125200 chr3D 100.000 29 0 0 5796 5824 610367911 610367883 4.000000e-03 54.7
56 TraesCS5A01G125200 chrUn 82.474 97 17 0 7541 7637 113291227 113291131 1.370000e-12 86.1
57 TraesCS5A01G125200 chrUn 82.474 97 17 0 7541 7637 178791309 178791405 1.370000e-12 86.1
58 TraesCS5A01G125200 chrUn 82.474 97 17 0 7541 7637 334442051 334442147 1.370000e-12 86.1
59 TraesCS5A01G125200 chrUn 81.443 97 18 0 7541 7637 314045709 314045805 6.350000e-11 80.5
60 TraesCS5A01G125200 chr1D 97.059 34 1 0 5462 5495 86104086 86104119 2.980000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G125200 chr5A 275102477 275110113 7636 True 7157.000000 14103 99.572500 1 7637 2 chr5A.!!$R2 7636
1 TraesCS5A01G125200 chr5D 211999186 212005882 6696 True 3778.333333 8008 96.422667 263 7092 3 chr5D.!!$R3 6829
2 TraesCS5A01G125200 chr5B 225529637 225534320 4683 True 3766.000000 6852 94.200000 3160 7632 2 chr5B.!!$R1 4472
3 TraesCS5A01G125200 chr5B 225539871 225542900 3029 True 1502.000000 1901 95.317000 266 3164 3 chr5B.!!$R2 2898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.024619 GTATTCTTTGTCGGTCGCGC 59.975 55.0 0.00 0.0 0.00 6.86 F
507 515 0.035915 GAGGCCAAAGACTCCCAGTC 60.036 60.0 5.01 0.0 45.38 3.51 F
818 830 1.444119 GCCAACGGAGCAAGTGTTGA 61.444 55.0 11.23 0.0 44.34 3.18 F
2311 2656 0.035056 GCCCTCAGTGCCACACTTAT 60.035 55.0 0.00 0.0 42.59 1.73 F
2409 2754 0.037419 GGCCATTTTGTTCGCCACAT 60.037 50.0 0.00 0.0 41.25 3.21 F
2416 2761 0.749649 TTGTTCGCCACATTTTGCCT 59.250 45.0 0.00 0.0 34.43 4.75 F
5569 5928 0.603707 GCTCCAACACACTAGCTGCA 60.604 55.0 1.02 0.0 32.18 4.41 F
6345 6709 0.107703 TGGGTCAGATTGCACGGATC 60.108 55.0 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1593 0.249073 CGAATCTTCCTCGCGGATGT 60.249 55.000 6.13 0.00 39.58 3.06 R
2292 2637 0.035056 ATAAGTGTGGCACTGAGGGC 60.035 55.000 19.83 0.00 44.62 5.19 R
2390 2735 0.037419 ATGTGGCGAACAAAATGGCC 60.037 50.000 0.00 0.00 43.61 5.36 R
4288 4643 0.694771 AGAGGATGGAGCTGCAACAA 59.305 50.000 13.45 0.00 0.00 2.83 R
4479 4834 3.330267 AGGAAGATCGCTCACTTGAAAC 58.670 45.455 0.00 0.00 0.00 2.78 R
5672 6033 0.813210 GGCATTTGAGGAGCTCTCGG 60.813 60.000 14.64 2.54 45.32 4.63 R
6590 6955 0.679002 AATCTGGTGCTGCGCAATCT 60.679 50.000 13.05 0.00 41.47 2.40 R
7379 7958 1.408702 GGTTGAAGCTTGCAAAGGACA 59.591 47.619 2.10 0.00 46.35 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.937201 GGTGAAAACCTCTGTCCATTTT 57.063 40.909 0.00 0.00 0.00 1.82
22 23 4.620982 GGTGAAAACCTCTGTCCATTTTG 58.379 43.478 0.00 0.00 0.00 2.44
23 24 4.501400 GGTGAAAACCTCTGTCCATTTTGG 60.501 45.833 0.00 0.00 39.43 3.28
24 25 4.340950 GTGAAAACCTCTGTCCATTTTGGA 59.659 41.667 0.00 0.00 45.98 3.53
31 32 4.294523 TCCATTTTGGACTCGGCG 57.705 55.556 0.00 0.00 42.67 6.46
32 33 1.376683 TCCATTTTGGACTCGGCGG 60.377 57.895 7.21 0.00 42.67 6.13
33 34 2.485122 CATTTTGGACTCGGCGGC 59.515 61.111 7.21 0.00 0.00 6.53
34 35 3.124921 ATTTTGGACTCGGCGGCG 61.125 61.111 27.15 27.15 0.00 6.46
54 55 3.774702 GCTTCGCGTCGTGTTCCC 61.775 66.667 5.77 0.00 0.00 3.97
55 56 2.049433 CTTCGCGTCGTGTTCCCT 60.049 61.111 5.77 0.00 0.00 4.20
56 57 1.663702 CTTCGCGTCGTGTTCCCTT 60.664 57.895 5.77 0.00 0.00 3.95
57 58 1.219522 CTTCGCGTCGTGTTCCCTTT 61.220 55.000 5.77 0.00 0.00 3.11
58 59 0.810823 TTCGCGTCGTGTTCCCTTTT 60.811 50.000 5.77 0.00 0.00 2.27
59 60 0.031857 TCGCGTCGTGTTCCCTTTTA 59.968 50.000 5.77 0.00 0.00 1.52
60 61 0.437295 CGCGTCGTGTTCCCTTTTAG 59.563 55.000 0.00 0.00 0.00 1.85
61 62 0.794473 GCGTCGTGTTCCCTTTTAGG 59.206 55.000 0.00 0.00 34.30 2.69
73 74 3.317603 CCTTTTAGGGGCATTGTTGTG 57.682 47.619 0.00 0.00 0.00 3.33
74 75 2.028203 CCTTTTAGGGGCATTGTTGTGG 60.028 50.000 0.00 0.00 0.00 4.17
75 76 2.685106 TTTAGGGGCATTGTTGTGGA 57.315 45.000 0.00 0.00 0.00 4.02
76 77 2.214376 TTAGGGGCATTGTTGTGGAG 57.786 50.000 0.00 0.00 0.00 3.86
77 78 1.072266 TAGGGGCATTGTTGTGGAGT 58.928 50.000 0.00 0.00 0.00 3.85
78 79 0.540365 AGGGGCATTGTTGTGGAGTG 60.540 55.000 0.00 0.00 0.00 3.51
79 80 0.827507 GGGGCATTGTTGTGGAGTGT 60.828 55.000 0.00 0.00 0.00 3.55
80 81 1.546773 GGGGCATTGTTGTGGAGTGTA 60.547 52.381 0.00 0.00 0.00 2.90
81 82 1.812571 GGGCATTGTTGTGGAGTGTAG 59.187 52.381 0.00 0.00 0.00 2.74
82 83 1.812571 GGCATTGTTGTGGAGTGTAGG 59.187 52.381 0.00 0.00 0.00 3.18
83 84 2.504367 GCATTGTTGTGGAGTGTAGGT 58.496 47.619 0.00 0.00 0.00 3.08
84 85 2.226437 GCATTGTTGTGGAGTGTAGGTG 59.774 50.000 0.00 0.00 0.00 4.00
85 86 3.476552 CATTGTTGTGGAGTGTAGGTGT 58.523 45.455 0.00 0.00 0.00 4.16
86 87 3.637911 TTGTTGTGGAGTGTAGGTGTT 57.362 42.857 0.00 0.00 0.00 3.32
87 88 2.912771 TGTTGTGGAGTGTAGGTGTTG 58.087 47.619 0.00 0.00 0.00 3.33
88 89 2.237643 TGTTGTGGAGTGTAGGTGTTGT 59.762 45.455 0.00 0.00 0.00 3.32
89 90 3.451540 TGTTGTGGAGTGTAGGTGTTGTA 59.548 43.478 0.00 0.00 0.00 2.41
90 91 4.056050 GTTGTGGAGTGTAGGTGTTGTAG 58.944 47.826 0.00 0.00 0.00 2.74
91 92 2.631062 TGTGGAGTGTAGGTGTTGTAGG 59.369 50.000 0.00 0.00 0.00 3.18
92 93 2.895404 GTGGAGTGTAGGTGTTGTAGGA 59.105 50.000 0.00 0.00 0.00 2.94
93 94 3.514309 GTGGAGTGTAGGTGTTGTAGGAT 59.486 47.826 0.00 0.00 0.00 3.24
94 95 3.513912 TGGAGTGTAGGTGTTGTAGGATG 59.486 47.826 0.00 0.00 0.00 3.51
95 96 3.514309 GGAGTGTAGGTGTTGTAGGATGT 59.486 47.826 0.00 0.00 0.00 3.06
96 97 4.708421 GGAGTGTAGGTGTTGTAGGATGTA 59.292 45.833 0.00 0.00 0.00 2.29
97 98 5.163540 GGAGTGTAGGTGTTGTAGGATGTAG 60.164 48.000 0.00 0.00 0.00 2.74
98 99 4.710375 AGTGTAGGTGTTGTAGGATGTAGG 59.290 45.833 0.00 0.00 0.00 3.18
99 100 4.028131 TGTAGGTGTTGTAGGATGTAGGG 58.972 47.826 0.00 0.00 0.00 3.53
100 101 3.200958 AGGTGTTGTAGGATGTAGGGT 57.799 47.619 0.00 0.00 0.00 4.34
101 102 2.838202 AGGTGTTGTAGGATGTAGGGTG 59.162 50.000 0.00 0.00 0.00 4.61
102 103 2.835764 GGTGTTGTAGGATGTAGGGTGA 59.164 50.000 0.00 0.00 0.00 4.02
103 104 3.369157 GGTGTTGTAGGATGTAGGGTGAC 60.369 52.174 0.00 0.00 0.00 3.67
104 105 2.494471 TGTTGTAGGATGTAGGGTGACG 59.506 50.000 0.00 0.00 0.00 4.35
105 106 1.771565 TGTAGGATGTAGGGTGACGG 58.228 55.000 0.00 0.00 0.00 4.79
106 107 1.006281 TGTAGGATGTAGGGTGACGGT 59.994 52.381 0.00 0.00 0.00 4.83
107 108 1.407979 GTAGGATGTAGGGTGACGGTG 59.592 57.143 0.00 0.00 0.00 4.94
108 109 0.252103 AGGATGTAGGGTGACGGTGT 60.252 55.000 0.00 0.00 0.00 4.16
109 110 0.611714 GGATGTAGGGTGACGGTGTT 59.388 55.000 0.00 0.00 0.00 3.32
110 111 1.826720 GGATGTAGGGTGACGGTGTTA 59.173 52.381 0.00 0.00 0.00 2.41
111 112 2.433239 GGATGTAGGGTGACGGTGTTAT 59.567 50.000 0.00 0.00 0.00 1.89
112 113 3.492137 GGATGTAGGGTGACGGTGTTATC 60.492 52.174 0.00 0.00 0.00 1.75
113 114 2.527497 TGTAGGGTGACGGTGTTATCA 58.473 47.619 0.00 0.00 0.00 2.15
114 115 2.494471 TGTAGGGTGACGGTGTTATCAG 59.506 50.000 0.00 0.00 0.00 2.90
115 116 0.249398 AGGGTGACGGTGTTATCAGC 59.751 55.000 0.00 0.00 41.56 4.26
116 117 0.249398 GGGTGACGGTGTTATCAGCT 59.751 55.000 3.73 0.00 41.89 4.24
117 118 1.641577 GGTGACGGTGTTATCAGCTC 58.358 55.000 1.83 0.20 39.66 4.09
118 119 1.204941 GGTGACGGTGTTATCAGCTCT 59.795 52.381 1.83 0.00 39.66 4.09
119 120 2.353803 GGTGACGGTGTTATCAGCTCTT 60.354 50.000 1.83 0.00 39.66 2.85
120 121 2.924290 GTGACGGTGTTATCAGCTCTTC 59.076 50.000 1.83 0.00 39.58 2.87
121 122 2.094182 TGACGGTGTTATCAGCTCTTCC 60.094 50.000 1.83 0.00 39.58 3.46
122 123 2.166664 GACGGTGTTATCAGCTCTTCCT 59.833 50.000 1.83 0.00 39.58 3.36
123 124 2.093973 ACGGTGTTATCAGCTCTTCCTG 60.094 50.000 1.83 0.00 39.58 3.86
124 125 2.093973 CGGTGTTATCAGCTCTTCCTGT 60.094 50.000 1.83 0.00 39.58 4.00
125 126 3.130516 CGGTGTTATCAGCTCTTCCTGTA 59.869 47.826 1.83 0.00 39.58 2.74
126 127 4.202161 CGGTGTTATCAGCTCTTCCTGTAT 60.202 45.833 1.83 0.00 39.58 2.29
127 128 5.675538 GGTGTTATCAGCTCTTCCTGTATT 58.324 41.667 0.00 0.00 38.80 1.89
128 129 5.755861 GGTGTTATCAGCTCTTCCTGTATTC 59.244 44.000 0.00 0.00 38.80 1.75
129 130 6.407525 GGTGTTATCAGCTCTTCCTGTATTCT 60.408 42.308 0.00 0.00 38.80 2.40
130 131 7.044798 GTGTTATCAGCTCTTCCTGTATTCTT 58.955 38.462 0.00 0.00 34.47 2.52
131 132 7.550906 GTGTTATCAGCTCTTCCTGTATTCTTT 59.449 37.037 0.00 0.00 34.47 2.52
132 133 7.550551 TGTTATCAGCTCTTCCTGTATTCTTTG 59.449 37.037 0.00 0.00 34.47 2.77
133 134 5.489792 TCAGCTCTTCCTGTATTCTTTGT 57.510 39.130 0.00 0.00 34.47 2.83
134 135 5.482908 TCAGCTCTTCCTGTATTCTTTGTC 58.517 41.667 0.00 0.00 34.47 3.18
135 136 4.328440 CAGCTCTTCCTGTATTCTTTGTCG 59.672 45.833 0.00 0.00 0.00 4.35
136 137 3.619038 GCTCTTCCTGTATTCTTTGTCGG 59.381 47.826 0.00 0.00 0.00 4.79
137 138 4.822026 CTCTTCCTGTATTCTTTGTCGGT 58.178 43.478 0.00 0.00 0.00 4.69
138 139 4.817517 TCTTCCTGTATTCTTTGTCGGTC 58.182 43.478 0.00 0.00 0.00 4.79
139 140 3.226346 TCCTGTATTCTTTGTCGGTCG 57.774 47.619 0.00 0.00 0.00 4.79
140 141 1.659098 CCTGTATTCTTTGTCGGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
141 142 1.320555 CTGTATTCTTTGTCGGTCGCG 59.679 52.381 0.00 0.00 0.00 5.87
142 143 0.024619 GTATTCTTTGTCGGTCGCGC 59.975 55.000 0.00 0.00 0.00 6.86
143 144 0.388778 TATTCTTTGTCGGTCGCGCA 60.389 50.000 8.75 0.00 0.00 6.09
144 145 1.019278 ATTCTTTGTCGGTCGCGCAT 61.019 50.000 8.75 0.00 0.00 4.73
145 146 1.896339 TTCTTTGTCGGTCGCGCATG 61.896 55.000 8.75 0.00 0.00 4.06
146 147 2.663520 TTTGTCGGTCGCGCATGT 60.664 55.556 8.75 0.00 0.00 3.21
147 148 2.816692 CTTTGTCGGTCGCGCATGTG 62.817 60.000 8.75 0.66 0.00 3.21
148 149 4.656117 TGTCGGTCGCGCATGTGT 62.656 61.111 8.75 0.00 0.00 3.72
149 150 4.134187 GTCGGTCGCGCATGTGTG 62.134 66.667 13.65 13.65 0.00 3.82
150 151 4.656117 TCGGTCGCGCATGTGTGT 62.656 61.111 18.67 0.00 0.00 3.72
151 152 3.711842 CGGTCGCGCATGTGTGTT 61.712 61.111 18.67 0.00 0.00 3.32
152 153 2.637025 GGTCGCGCATGTGTGTTT 59.363 55.556 18.67 0.00 0.00 2.83
153 154 1.440353 GGTCGCGCATGTGTGTTTC 60.440 57.895 18.67 10.69 0.00 2.78
154 155 1.788203 GTCGCGCATGTGTGTTTCG 60.788 57.895 18.67 8.15 0.00 3.46
155 156 2.499520 CGCGCATGTGTGTTTCGG 60.500 61.111 8.75 0.00 0.00 4.30
156 157 2.637025 GCGCATGTGTGTTTCGGT 59.363 55.556 0.30 0.00 0.00 4.69
157 158 1.440353 GCGCATGTGTGTTTCGGTC 60.440 57.895 0.30 0.00 0.00 4.79
158 159 1.206578 CGCATGTGTGTTTCGGTCC 59.793 57.895 0.00 0.00 0.00 4.46
159 160 1.227999 CGCATGTGTGTTTCGGTCCT 61.228 55.000 0.00 0.00 0.00 3.85
160 161 0.951558 GCATGTGTGTTTCGGTCCTT 59.048 50.000 0.00 0.00 0.00 3.36
161 162 1.334960 GCATGTGTGTTTCGGTCCTTG 60.335 52.381 0.00 0.00 0.00 3.61
162 163 1.266718 CATGTGTGTTTCGGTCCTTGG 59.733 52.381 0.00 0.00 0.00 3.61
163 164 0.464735 TGTGTGTTTCGGTCCTTGGG 60.465 55.000 0.00 0.00 0.00 4.12
164 165 0.179040 GTGTGTTTCGGTCCTTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
165 166 0.768622 TGTGTTTCGGTCCTTGGGAT 59.231 50.000 0.00 0.00 32.73 3.85
166 167 1.271163 TGTGTTTCGGTCCTTGGGATC 60.271 52.381 0.00 0.00 32.73 3.36
171 172 3.782443 GGTCCTTGGGATCGGCGT 61.782 66.667 6.85 0.00 32.73 5.68
172 173 2.267961 GTCCTTGGGATCGGCGTT 59.732 61.111 6.85 0.00 32.73 4.84
173 174 2.106683 GTCCTTGGGATCGGCGTTG 61.107 63.158 6.85 0.00 32.73 4.10
174 175 2.046314 CCTTGGGATCGGCGTTGT 60.046 61.111 6.85 0.00 0.00 3.32
175 176 1.674322 CCTTGGGATCGGCGTTGTT 60.674 57.895 6.85 0.00 0.00 2.83
176 177 0.391927 CCTTGGGATCGGCGTTGTTA 60.392 55.000 6.85 0.00 0.00 2.41
177 178 1.006832 CTTGGGATCGGCGTTGTTAG 58.993 55.000 6.85 0.00 0.00 2.34
178 179 0.609151 TTGGGATCGGCGTTGTTAGA 59.391 50.000 6.85 0.00 0.00 2.10
179 180 0.174845 TGGGATCGGCGTTGTTAGAG 59.825 55.000 6.85 0.00 0.00 2.43
180 181 0.529992 GGGATCGGCGTTGTTAGAGG 60.530 60.000 6.85 0.00 0.00 3.69
181 182 0.529992 GGATCGGCGTTGTTAGAGGG 60.530 60.000 6.85 0.00 0.00 4.30
182 183 0.175073 GATCGGCGTTGTTAGAGGGT 59.825 55.000 6.85 0.00 0.00 4.34
183 184 0.611714 ATCGGCGTTGTTAGAGGGTT 59.388 50.000 6.85 0.00 0.00 4.11
184 185 0.393820 TCGGCGTTGTTAGAGGGTTT 59.606 50.000 6.85 0.00 0.00 3.27
185 186 1.202675 TCGGCGTTGTTAGAGGGTTTT 60.203 47.619 6.85 0.00 0.00 2.43
186 187 1.196127 CGGCGTTGTTAGAGGGTTTTC 59.804 52.381 0.00 0.00 0.00 2.29
187 188 2.223745 GGCGTTGTTAGAGGGTTTTCA 58.776 47.619 0.00 0.00 0.00 2.69
188 189 2.817844 GGCGTTGTTAGAGGGTTTTCAT 59.182 45.455 0.00 0.00 0.00 2.57
189 190 3.119955 GGCGTTGTTAGAGGGTTTTCATC 60.120 47.826 0.00 0.00 0.00 2.92
190 191 3.500680 GCGTTGTTAGAGGGTTTTCATCA 59.499 43.478 0.00 0.00 0.00 3.07
191 192 4.612939 GCGTTGTTAGAGGGTTTTCATCAC 60.613 45.833 0.00 0.00 0.00 3.06
192 193 4.755123 CGTTGTTAGAGGGTTTTCATCACT 59.245 41.667 0.00 0.00 0.00 3.41
193 194 5.238650 CGTTGTTAGAGGGTTTTCATCACTT 59.761 40.000 0.00 0.00 0.00 3.16
194 195 6.425721 CGTTGTTAGAGGGTTTTCATCACTTA 59.574 38.462 0.00 0.00 0.00 2.24
195 196 7.119262 CGTTGTTAGAGGGTTTTCATCACTTAT 59.881 37.037 0.00 0.00 0.00 1.73
196 197 8.793592 GTTGTTAGAGGGTTTTCATCACTTATT 58.206 33.333 0.00 0.00 0.00 1.40
197 198 8.335532 TGTTAGAGGGTTTTCATCACTTATTG 57.664 34.615 0.00 0.00 0.00 1.90
198 199 7.942341 TGTTAGAGGGTTTTCATCACTTATTGT 59.058 33.333 0.00 0.00 0.00 2.71
199 200 8.793592 GTTAGAGGGTTTTCATCACTTATTGTT 58.206 33.333 0.00 0.00 0.00 2.83
200 201 7.839680 AGAGGGTTTTCATCACTTATTGTTT 57.160 32.000 0.00 0.00 0.00 2.83
201 202 7.661040 AGAGGGTTTTCATCACTTATTGTTTG 58.339 34.615 0.00 0.00 0.00 2.93
202 203 6.758254 AGGGTTTTCATCACTTATTGTTTGG 58.242 36.000 0.00 0.00 0.00 3.28
203 204 5.408299 GGGTTTTCATCACTTATTGTTTGGC 59.592 40.000 0.00 0.00 0.00 4.52
204 205 5.408299 GGTTTTCATCACTTATTGTTTGGCC 59.592 40.000 0.00 0.00 0.00 5.36
205 206 5.798125 TTTCATCACTTATTGTTTGGCCA 57.202 34.783 0.00 0.00 0.00 5.36
206 207 5.999205 TTCATCACTTATTGTTTGGCCAT 57.001 34.783 6.09 0.00 0.00 4.40
207 208 5.327616 TCATCACTTATTGTTTGGCCATG 57.672 39.130 6.09 0.00 0.00 3.66
208 209 4.771577 TCATCACTTATTGTTTGGCCATGT 59.228 37.500 6.09 0.00 0.00 3.21
209 210 5.948758 TCATCACTTATTGTTTGGCCATGTA 59.051 36.000 6.09 0.00 0.00 2.29
210 211 5.637006 TCACTTATTGTTTGGCCATGTAC 57.363 39.130 6.09 6.22 0.00 2.90
211 212 5.321102 TCACTTATTGTTTGGCCATGTACT 58.679 37.500 6.09 0.00 0.00 2.73
212 213 5.414454 TCACTTATTGTTTGGCCATGTACTC 59.586 40.000 6.09 0.00 0.00 2.59
213 214 5.415701 CACTTATTGTTTGGCCATGTACTCT 59.584 40.000 6.09 0.30 0.00 3.24
214 215 6.010219 ACTTATTGTTTGGCCATGTACTCTT 58.990 36.000 6.09 0.00 0.00 2.85
215 216 4.789012 ATTGTTTGGCCATGTACTCTTG 57.211 40.909 6.09 0.00 0.00 3.02
216 217 3.222173 TGTTTGGCCATGTACTCTTGT 57.778 42.857 6.09 0.00 0.00 3.16
217 218 2.884012 TGTTTGGCCATGTACTCTTGTG 59.116 45.455 6.09 0.00 0.00 3.33
218 219 2.884639 GTTTGGCCATGTACTCTTGTGT 59.115 45.455 6.09 0.00 0.00 3.72
219 220 2.183478 TGGCCATGTACTCTTGTGTG 57.817 50.000 0.00 0.00 0.00 3.82
220 221 1.271325 TGGCCATGTACTCTTGTGTGG 60.271 52.381 0.00 0.00 0.00 4.17
221 222 1.271379 GGCCATGTACTCTTGTGTGGT 60.271 52.381 0.00 0.00 31.57 4.16
222 223 2.504367 GCCATGTACTCTTGTGTGGTT 58.496 47.619 0.00 0.00 31.57 3.67
223 224 2.226437 GCCATGTACTCTTGTGTGGTTG 59.774 50.000 0.00 0.00 31.57 3.77
224 225 2.226437 CCATGTACTCTTGTGTGGTTGC 59.774 50.000 0.00 0.00 0.00 4.17
225 226 3.141398 CATGTACTCTTGTGTGGTTGCT 58.859 45.455 0.00 0.00 0.00 3.91
226 227 3.275617 TGTACTCTTGTGTGGTTGCTT 57.724 42.857 0.00 0.00 0.00 3.91
227 228 3.616219 TGTACTCTTGTGTGGTTGCTTT 58.384 40.909 0.00 0.00 0.00 3.51
228 229 4.771903 TGTACTCTTGTGTGGTTGCTTTA 58.228 39.130 0.00 0.00 0.00 1.85
229 230 5.373222 TGTACTCTTGTGTGGTTGCTTTAT 58.627 37.500 0.00 0.00 0.00 1.40
230 231 6.526526 TGTACTCTTGTGTGGTTGCTTTATA 58.473 36.000 0.00 0.00 0.00 0.98
231 232 6.993308 TGTACTCTTGTGTGGTTGCTTTATAA 59.007 34.615 0.00 0.00 0.00 0.98
232 233 7.663905 TGTACTCTTGTGTGGTTGCTTTATAAT 59.336 33.333 0.00 0.00 0.00 1.28
233 234 9.158233 GTACTCTTGTGTGGTTGCTTTATAATA 57.842 33.333 0.00 0.00 0.00 0.98
234 235 8.630054 ACTCTTGTGTGGTTGCTTTATAATAA 57.370 30.769 0.00 0.00 0.00 1.40
235 236 9.073475 ACTCTTGTGTGGTTGCTTTATAATAAA 57.927 29.630 0.00 0.00 0.00 1.40
236 237 9.559958 CTCTTGTGTGGTTGCTTTATAATAAAG 57.440 33.333 0.00 0.00 0.00 1.85
282 283 0.326264 GGTGTGTTGGAGAGGAGCAT 59.674 55.000 0.00 0.00 0.00 3.79
297 298 7.234988 GGAGAGGAGCATTATTTAACCTAGGTA 59.765 40.741 16.67 0.00 0.00 3.08
298 299 8.743636 AGAGGAGCATTATTTAACCTAGGTAT 57.256 34.615 16.67 7.93 0.00 2.73
319 325 8.666821 AGGTATAAATACATAAAAGGAGGGGAC 58.333 37.037 2.74 0.00 34.98 4.46
506 514 0.474660 AGAGGCCAAAGACTCCCAGT 60.475 55.000 5.01 0.00 34.27 4.00
507 515 0.035915 GAGGCCAAAGACTCCCAGTC 60.036 60.000 5.01 0.00 45.38 3.51
530 538 2.029470 CAGACCAGACCAGAGTGAGAAC 60.029 54.545 0.00 0.00 0.00 3.01
710 722 3.972971 CTCTGCCTCTGGTGCTGCC 62.973 68.421 0.00 0.00 37.90 4.85
778 790 4.101448 GGCGAGCCCCACTGATGT 62.101 66.667 1.97 0.00 0.00 3.06
818 830 1.444119 GCCAACGGAGCAAGTGTTGA 61.444 55.000 11.23 0.00 44.34 3.18
1248 1593 6.252869 GCTAGATTTGTCTCGTACGAATGAAA 59.747 38.462 20.00 16.45 41.48 2.69
1365 1710 4.047059 CCGTACGCTCGTGTGGGT 62.047 66.667 10.49 2.44 36.98 4.51
1724 2069 1.988107 TCCAACTGGATCTGAGGCTTT 59.012 47.619 0.00 0.00 39.78 3.51
1924 2269 2.570415 TTTTTCAGTACCATCGGCCA 57.430 45.000 2.24 0.00 0.00 5.36
2012 2357 8.581578 AGATCCGAGGTATAAATTCTTCTTCTC 58.418 37.037 0.00 0.00 0.00 2.87
2019 2364 8.541234 AGGTATAAATTCTTCTTCTCCGTTCTT 58.459 33.333 0.00 0.00 0.00 2.52
2091 2436 1.924524 CACCTAACATTAGTCGTGCCG 59.075 52.381 0.00 0.00 0.00 5.69
2119 2464 3.057315 CCTTAGGCATGTGTTTGGTTCAG 60.057 47.826 0.00 0.00 0.00 3.02
2258 2603 1.609208 CAGCCACAGTTTGCCTAAGT 58.391 50.000 0.00 0.00 0.00 2.24
2259 2604 1.956477 CAGCCACAGTTTGCCTAAGTT 59.044 47.619 0.00 0.00 0.00 2.66
2260 2605 2.362077 CAGCCACAGTTTGCCTAAGTTT 59.638 45.455 0.00 0.00 0.00 2.66
2261 2606 3.568007 CAGCCACAGTTTGCCTAAGTTTA 59.432 43.478 0.00 0.00 0.00 2.01
2262 2607 3.821033 AGCCACAGTTTGCCTAAGTTTAG 59.179 43.478 0.00 0.00 0.00 1.85
2263 2608 3.568430 GCCACAGTTTGCCTAAGTTTAGT 59.432 43.478 0.00 0.00 0.00 2.24
2264 2609 4.037565 GCCACAGTTTGCCTAAGTTTAGTT 59.962 41.667 0.00 0.00 0.00 2.24
2265 2610 5.519722 CCACAGTTTGCCTAAGTTTAGTTG 58.480 41.667 0.00 0.00 0.00 3.16
2266 2611 5.067283 CCACAGTTTGCCTAAGTTTAGTTGT 59.933 40.000 0.00 0.00 0.00 3.32
2267 2612 5.971202 CACAGTTTGCCTAAGTTTAGTTGTG 59.029 40.000 0.00 0.00 0.00 3.33
2268 2613 5.067283 ACAGTTTGCCTAAGTTTAGTTGTGG 59.933 40.000 0.00 0.00 0.00 4.17
2269 2614 4.037565 AGTTTGCCTAAGTTTAGTTGTGGC 59.962 41.667 0.00 0.00 39.33 5.01
2270 2615 3.216187 TGCCTAAGTTTAGTTGTGGCA 57.784 42.857 11.95 11.95 45.31 4.92
2271 2616 3.556999 TGCCTAAGTTTAGTTGTGGCAA 58.443 40.909 12.98 0.00 44.67 4.52
2272 2617 3.954904 TGCCTAAGTTTAGTTGTGGCAAA 59.045 39.130 12.98 0.00 44.67 3.68
2273 2618 4.037446 TGCCTAAGTTTAGTTGTGGCAAAG 59.963 41.667 12.98 0.00 44.67 2.77
2274 2619 4.037565 GCCTAAGTTTAGTTGTGGCAAAGT 59.962 41.667 0.00 0.00 38.79 2.66
2275 2620 5.239963 GCCTAAGTTTAGTTGTGGCAAAGTA 59.760 40.000 0.00 0.00 38.79 2.24
2276 2621 6.567891 GCCTAAGTTTAGTTGTGGCAAAGTAG 60.568 42.308 0.00 0.00 38.79 2.57
2277 2622 6.485648 CCTAAGTTTAGTTGTGGCAAAGTAGT 59.514 38.462 0.00 0.00 0.00 2.73
2278 2623 6.373186 AAGTTTAGTTGTGGCAAAGTAGTC 57.627 37.500 0.00 0.00 0.00 2.59
2279 2624 5.433526 AGTTTAGTTGTGGCAAAGTAGTCA 58.566 37.500 0.00 0.00 0.00 3.41
2280 2625 6.062095 AGTTTAGTTGTGGCAAAGTAGTCAT 58.938 36.000 0.00 0.00 0.00 3.06
2281 2626 5.940192 TTAGTTGTGGCAAAGTAGTCATG 57.060 39.130 0.00 0.00 0.00 3.07
2282 2627 4.085357 AGTTGTGGCAAAGTAGTCATGA 57.915 40.909 0.00 0.00 0.00 3.07
2283 2628 4.460263 AGTTGTGGCAAAGTAGTCATGAA 58.540 39.130 0.00 0.00 0.00 2.57
2284 2629 4.275936 AGTTGTGGCAAAGTAGTCATGAAC 59.724 41.667 0.00 0.00 0.00 3.18
2285 2630 3.146066 TGTGGCAAAGTAGTCATGAACC 58.854 45.455 0.00 0.00 0.00 3.62
2286 2631 3.146066 GTGGCAAAGTAGTCATGAACCA 58.854 45.455 0.00 0.00 0.00 3.67
2287 2632 3.568007 GTGGCAAAGTAGTCATGAACCAA 59.432 43.478 0.00 0.00 0.00 3.67
2288 2633 4.037446 GTGGCAAAGTAGTCATGAACCAAA 59.963 41.667 0.00 0.00 0.00 3.28
2289 2634 4.037446 TGGCAAAGTAGTCATGAACCAAAC 59.963 41.667 0.00 0.00 0.00 2.93
2290 2635 4.037446 GGCAAAGTAGTCATGAACCAAACA 59.963 41.667 0.00 0.00 0.00 2.83
2291 2636 4.976116 GCAAAGTAGTCATGAACCAAACAC 59.024 41.667 0.00 0.00 0.00 3.32
2292 2637 5.204833 CAAAGTAGTCATGAACCAAACACG 58.795 41.667 0.00 0.00 0.00 4.49
2293 2638 2.806244 AGTAGTCATGAACCAAACACGC 59.194 45.455 0.00 0.00 0.00 5.34
2294 2639 0.951558 AGTCATGAACCAAACACGCC 59.048 50.000 0.00 0.00 0.00 5.68
2295 2640 0.039527 GTCATGAACCAAACACGCCC 60.040 55.000 0.00 0.00 0.00 6.13
2296 2641 0.179004 TCATGAACCAAACACGCCCT 60.179 50.000 0.00 0.00 0.00 5.19
2297 2642 0.240945 CATGAACCAAACACGCCCTC 59.759 55.000 0.00 0.00 0.00 4.30
2298 2643 0.179004 ATGAACCAAACACGCCCTCA 60.179 50.000 0.00 0.00 0.00 3.86
2299 2644 0.817634 TGAACCAAACACGCCCTCAG 60.818 55.000 0.00 0.00 0.00 3.35
2300 2645 0.818040 GAACCAAACACGCCCTCAGT 60.818 55.000 0.00 0.00 0.00 3.41
2301 2646 1.101049 AACCAAACACGCCCTCAGTG 61.101 55.000 0.00 0.00 44.57 3.66
2302 2647 2.639286 CAAACACGCCCTCAGTGC 59.361 61.111 0.00 0.00 42.94 4.40
2303 2648 2.594592 AAACACGCCCTCAGTGCC 60.595 61.111 0.00 0.00 42.94 5.01
2304 2649 3.414136 AAACACGCCCTCAGTGCCA 62.414 57.895 0.00 0.00 42.94 4.92
2305 2650 4.626081 ACACGCCCTCAGTGCCAC 62.626 66.667 0.00 0.00 42.94 5.01
2306 2651 4.624364 CACGCCCTCAGTGCCACA 62.624 66.667 0.00 0.00 32.52 4.17
2307 2652 4.626081 ACGCCCTCAGTGCCACAC 62.626 66.667 0.00 0.00 34.10 3.82
2308 2653 4.320456 CGCCCTCAGTGCCACACT 62.320 66.667 0.00 0.00 46.51 3.55
2309 2654 2.113986 GCCCTCAGTGCCACACTT 59.886 61.111 0.00 0.00 42.59 3.16
2310 2655 1.374947 GCCCTCAGTGCCACACTTA 59.625 57.895 0.00 0.00 42.59 2.24
2311 2656 0.035056 GCCCTCAGTGCCACACTTAT 60.035 55.000 0.00 0.00 42.59 1.73
2312 2657 1.742761 CCCTCAGTGCCACACTTATG 58.257 55.000 0.00 0.00 42.59 1.90
2313 2658 1.679944 CCCTCAGTGCCACACTTATGG 60.680 57.143 0.00 1.19 42.59 2.74
2320 2665 2.959967 CCACACTTATGGCTTGCCA 58.040 52.632 17.19 17.19 31.52 4.92
2321 2666 0.527565 CCACACTTATGGCTTGCCAC 59.472 55.000 17.22 0.00 31.52 5.01
2322 2667 1.246649 CACACTTATGGCTTGCCACA 58.753 50.000 17.22 1.61 0.00 4.17
2323 2668 1.068333 CACACTTATGGCTTGCCACAC 60.068 52.381 17.22 0.00 0.00 3.82
2324 2669 1.202927 ACACTTATGGCTTGCCACACT 60.203 47.619 17.22 3.94 0.00 3.55
2325 2670 1.888512 CACTTATGGCTTGCCACACTT 59.111 47.619 17.22 3.56 0.00 3.16
2326 2671 2.297033 CACTTATGGCTTGCCACACTTT 59.703 45.455 17.22 3.17 0.00 2.66
2327 2672 2.965147 ACTTATGGCTTGCCACACTTTT 59.035 40.909 17.22 2.41 0.00 2.27
2328 2673 3.005791 ACTTATGGCTTGCCACACTTTTC 59.994 43.478 17.22 0.00 0.00 2.29
2329 2674 1.708341 ATGGCTTGCCACACTTTTCT 58.292 45.000 17.22 0.00 0.00 2.52
2330 2675 2.356665 TGGCTTGCCACACTTTTCTA 57.643 45.000 10.65 0.00 0.00 2.10
2331 2676 2.660572 TGGCTTGCCACACTTTTCTAA 58.339 42.857 10.65 0.00 0.00 2.10
2332 2677 2.360801 TGGCTTGCCACACTTTTCTAAC 59.639 45.455 10.65 0.00 0.00 2.34
2333 2678 2.623416 GGCTTGCCACACTTTTCTAACT 59.377 45.455 6.79 0.00 0.00 2.24
2334 2679 3.818773 GGCTTGCCACACTTTTCTAACTA 59.181 43.478 6.79 0.00 0.00 2.24
2335 2680 4.320275 GGCTTGCCACACTTTTCTAACTAC 60.320 45.833 6.79 0.00 0.00 2.73
2336 2681 4.274950 GCTTGCCACACTTTTCTAACTACA 59.725 41.667 0.00 0.00 0.00 2.74
2337 2682 5.048713 GCTTGCCACACTTTTCTAACTACAT 60.049 40.000 0.00 0.00 0.00 2.29
2338 2683 5.940192 TGCCACACTTTTCTAACTACATG 57.060 39.130 0.00 0.00 0.00 3.21
2339 2684 4.759693 TGCCACACTTTTCTAACTACATGG 59.240 41.667 0.00 0.00 0.00 3.66
2340 2685 4.760204 GCCACACTTTTCTAACTACATGGT 59.240 41.667 0.00 0.00 0.00 3.55
2341 2686 5.106673 GCCACACTTTTCTAACTACATGGTC 60.107 44.000 0.00 0.00 0.00 4.02
2342 2687 5.411669 CCACACTTTTCTAACTACATGGTCC 59.588 44.000 0.00 0.00 0.00 4.46
2343 2688 5.995282 CACACTTTTCTAACTACATGGTCCA 59.005 40.000 0.00 0.00 0.00 4.02
2344 2689 5.995897 ACACTTTTCTAACTACATGGTCCAC 59.004 40.000 0.00 0.00 0.00 4.02
2345 2690 5.995282 CACTTTTCTAACTACATGGTCCACA 59.005 40.000 0.00 0.00 0.00 4.17
2346 2691 6.655003 CACTTTTCTAACTACATGGTCCACAT 59.345 38.462 0.00 0.00 41.57 3.21
2355 2700 2.645838 ATGGTCCACATGCCATAGAC 57.354 50.000 0.00 0.00 43.09 2.59
2356 2701 1.583556 TGGTCCACATGCCATAGACT 58.416 50.000 0.00 0.00 0.00 3.24
2357 2702 1.486310 TGGTCCACATGCCATAGACTC 59.514 52.381 0.00 0.00 0.00 3.36
2358 2703 1.486310 GGTCCACATGCCATAGACTCA 59.514 52.381 0.00 0.00 0.00 3.41
2359 2704 2.105477 GGTCCACATGCCATAGACTCAT 59.895 50.000 0.00 0.00 0.00 2.90
2360 2705 3.434167 GGTCCACATGCCATAGACTCATT 60.434 47.826 0.00 0.00 0.00 2.57
2361 2706 4.202441 GTCCACATGCCATAGACTCATTT 58.798 43.478 0.00 0.00 0.00 2.32
2362 2707 5.368145 GTCCACATGCCATAGACTCATTTA 58.632 41.667 0.00 0.00 0.00 1.40
2363 2708 6.000219 GTCCACATGCCATAGACTCATTTAT 59.000 40.000 0.00 0.00 0.00 1.40
2364 2709 6.488006 GTCCACATGCCATAGACTCATTTATT 59.512 38.462 0.00 0.00 0.00 1.40
2365 2710 7.013655 GTCCACATGCCATAGACTCATTTATTT 59.986 37.037 0.00 0.00 0.00 1.40
2366 2711 8.217111 TCCACATGCCATAGACTCATTTATTTA 58.783 33.333 0.00 0.00 0.00 1.40
2367 2712 8.292448 CCACATGCCATAGACTCATTTATTTAC 58.708 37.037 0.00 0.00 0.00 2.01
2368 2713 8.292448 CACATGCCATAGACTCATTTATTTACC 58.708 37.037 0.00 0.00 0.00 2.85
2369 2714 7.998383 ACATGCCATAGACTCATTTATTTACCA 59.002 33.333 0.00 0.00 0.00 3.25
2370 2715 8.849168 CATGCCATAGACTCATTTATTTACCAA 58.151 33.333 0.00 0.00 0.00 3.67
2371 2716 8.815565 TGCCATAGACTCATTTATTTACCAAA 57.184 30.769 0.00 0.00 0.00 3.28
2372 2717 9.420118 TGCCATAGACTCATTTATTTACCAAAT 57.580 29.630 0.00 0.00 34.90 2.32
2373 2718 9.899226 GCCATAGACTCATTTATTTACCAAATC 57.101 33.333 0.00 0.00 32.38 2.17
2378 2723 8.470002 AGACTCATTTATTTACCAAATCTTGCC 58.530 33.333 0.00 0.00 32.38 4.52
2379 2724 8.133024 ACTCATTTATTTACCAAATCTTGCCA 57.867 30.769 0.00 0.00 32.38 4.92
2380 2725 8.034804 ACTCATTTATTTACCAAATCTTGCCAC 58.965 33.333 0.00 0.00 32.38 5.01
2381 2726 7.901029 TCATTTATTTACCAAATCTTGCCACA 58.099 30.769 0.00 0.00 32.38 4.17
2382 2727 7.816995 TCATTTATTTACCAAATCTTGCCACAC 59.183 33.333 0.00 0.00 32.38 3.82
2383 2728 6.909550 TTATTTACCAAATCTTGCCACACT 57.090 33.333 0.00 0.00 32.38 3.55
2384 2729 5.806654 ATTTACCAAATCTTGCCACACTT 57.193 34.783 0.00 0.00 0.00 3.16
2385 2730 4.582701 TTACCAAATCTTGCCACACTTG 57.417 40.909 0.00 0.00 0.00 3.16
2386 2731 2.387757 ACCAAATCTTGCCACACTTGT 58.612 42.857 0.00 0.00 0.00 3.16
2387 2732 2.101249 ACCAAATCTTGCCACACTTGTG 59.899 45.455 2.13 2.13 45.23 3.33
2399 2744 1.868469 CACTTGTGGTGGCCATTTTG 58.132 50.000 9.72 0.00 41.90 2.44
2400 2745 1.138661 CACTTGTGGTGGCCATTTTGT 59.861 47.619 9.72 0.52 41.90 2.83
2401 2746 1.836802 ACTTGTGGTGGCCATTTTGTT 59.163 42.857 9.72 0.00 35.28 2.83
2402 2747 2.158971 ACTTGTGGTGGCCATTTTGTTC 60.159 45.455 9.72 0.00 35.28 3.18
2403 2748 0.387202 TGTGGTGGCCATTTTGTTCG 59.613 50.000 9.72 0.00 35.28 3.95
2404 2749 0.943835 GTGGTGGCCATTTTGTTCGC 60.944 55.000 9.72 0.00 35.28 4.70
2405 2750 1.374125 GGTGGCCATTTTGTTCGCC 60.374 57.895 9.72 0.00 41.99 5.54
2407 2752 1.365633 TGGCCATTTTGTTCGCCAC 59.634 52.632 0.00 0.00 46.26 5.01
2408 2753 1.365633 GGCCATTTTGTTCGCCACA 59.634 52.632 0.00 0.00 41.25 4.17
2409 2754 0.037419 GGCCATTTTGTTCGCCACAT 60.037 50.000 0.00 0.00 41.25 3.21
2410 2755 1.607767 GGCCATTTTGTTCGCCACATT 60.608 47.619 0.00 0.00 41.25 2.71
2411 2756 2.142319 GCCATTTTGTTCGCCACATTT 58.858 42.857 0.00 0.00 34.43 2.32
2412 2757 2.547634 GCCATTTTGTTCGCCACATTTT 59.452 40.909 0.00 0.00 34.43 1.82
2413 2758 3.606615 GCCATTTTGTTCGCCACATTTTG 60.607 43.478 0.00 0.00 34.43 2.44
2414 2759 3.543670 CATTTTGTTCGCCACATTTTGC 58.456 40.909 0.00 0.00 34.43 3.68
2415 2760 1.576356 TTTGTTCGCCACATTTTGCC 58.424 45.000 0.00 0.00 34.43 4.52
2416 2761 0.749649 TTGTTCGCCACATTTTGCCT 59.250 45.000 0.00 0.00 34.43 4.75
2417 2762 1.610363 TGTTCGCCACATTTTGCCTA 58.390 45.000 0.00 0.00 0.00 3.93
2418 2763 1.957177 TGTTCGCCACATTTTGCCTAA 59.043 42.857 0.00 0.00 0.00 2.69
2419 2764 2.560542 TGTTCGCCACATTTTGCCTAAT 59.439 40.909 0.00 0.00 0.00 1.73
2458 2803 1.617850 GTCATGAACCAAACATGCCCA 59.382 47.619 0.00 0.00 43.03 5.36
2496 2841 4.734398 TTGTCTGGTTCATTTTTGCTGT 57.266 36.364 0.00 0.00 0.00 4.40
2630 2983 4.631377 TGAGTTTGATCTATTGTTCTGCCG 59.369 41.667 0.00 0.00 0.00 5.69
2703 3056 7.815840 TTGAACAAGTGGAAATCATGTAGAA 57.184 32.000 0.00 0.00 0.00 2.10
2854 3207 5.584913 TGGTTATCCCCAATTGTTATGTGT 58.415 37.500 4.43 0.00 0.00 3.72
2917 3270 1.818642 AGGTTGCTGCTGAGATGAAC 58.181 50.000 0.00 0.00 0.00 3.18
3127 3480 5.452776 CCCTGCTTTTGACAATGCATATCAT 60.453 40.000 12.92 0.00 41.04 2.45
3143 3496 7.864770 TGCATATCATCATACATATCCCACTT 58.135 34.615 0.00 0.00 0.00 3.16
3151 3504 9.288576 CATCATACATATCCCACTTAACATGTT 57.711 33.333 16.68 16.68 0.00 2.71
3439 3794 3.068307 ACCATTAGCACTAGGACTTAGCG 59.932 47.826 0.00 0.00 32.25 4.26
3484 3839 8.616076 ACATGTTAGAGCTCATAAAATGCTTAC 58.384 33.333 22.78 6.19 37.16 2.34
3698 4053 3.953712 TCTCCAGCGACTTATGAACAA 57.046 42.857 0.00 0.00 0.00 2.83
3752 4107 5.918608 AGTAGTGCATCAGTAAACATAGGG 58.081 41.667 0.00 0.00 0.00 3.53
3861 4216 3.057734 CGACAAACTCCTTACTGTGACC 58.942 50.000 0.00 0.00 0.00 4.02
4049 4404 2.190578 CGGAACCTGCCTCCATCC 59.809 66.667 0.00 0.00 32.77 3.51
4106 4461 7.428826 ACAGTCATGGAAACTTTGATTTTCTC 58.571 34.615 0.00 0.00 34.06 2.87
4139 4494 9.465985 GGTAATAGCATAGTCAAGTCTAACTTC 57.534 37.037 0.00 0.00 36.03 3.01
4140 4495 9.465985 GTAATAGCATAGTCAAGTCTAACTTCC 57.534 37.037 0.00 0.00 36.03 3.46
4255 4610 6.294564 CCCCAATCTGCTCAATTCATTATGAG 60.295 42.308 0.00 0.00 44.66 2.90
4288 4643 5.010012 GTCCCAAAAGAAACTCATGTCATGT 59.990 40.000 12.54 0.00 0.00 3.21
4313 4668 1.765657 AGCTCCATCCTCTGGCTCC 60.766 63.158 0.00 0.00 45.52 4.70
4479 4834 2.125350 GGCAGAAGCTCCCAGACG 60.125 66.667 0.00 0.00 41.70 4.18
5287 5643 5.295431 TCACTTTAAAATGCTCATGGACG 57.705 39.130 0.00 0.00 0.00 4.79
5288 5644 5.000591 TCACTTTAAAATGCTCATGGACGA 58.999 37.500 0.00 0.00 0.00 4.20
5289 5645 5.088739 CACTTTAAAATGCTCATGGACGAC 58.911 41.667 0.00 0.00 0.00 4.34
5569 5928 0.603707 GCTCCAACACACTAGCTGCA 60.604 55.000 1.02 0.00 32.18 4.41
5704 6067 4.378774 CTCAAATGCCATTTCACCACAAA 58.621 39.130 0.00 0.00 0.00 2.83
5780 6143 9.360093 TGCTATTTTATTTGAATTTACCGTTGG 57.640 29.630 0.00 0.00 0.00 3.77
6032 6396 4.166725 TGCCCAATCATAGTTGAGGATCTT 59.833 41.667 0.00 0.00 34.73 2.40
6345 6709 0.107703 TGGGTCAGATTGCACGGATC 60.108 55.000 0.00 0.00 0.00 3.36
6590 6955 6.423776 AGAAAATGGAAAAATGCCTCTTGA 57.576 33.333 0.00 0.00 0.00 3.02
6654 7019 0.879400 GAGTGATCGAGCATGGGCAG 60.879 60.000 6.66 0.00 44.61 4.85
6867 7232 7.661040 AGGAAGTGTTTGGATTGTAAAATCTG 58.339 34.615 5.61 0.00 0.00 2.90
6954 7323 5.843673 TTCTAGGTTGATCTGTCTAGCAG 57.156 43.478 7.59 7.59 46.34 4.24
7039 7408 5.356426 ACTTGGAATACTTTTTGTTGTGCC 58.644 37.500 0.00 0.00 0.00 5.01
7092 7461 3.801307 AAATCTGACCCCCTAAACGTT 57.199 42.857 0.00 0.00 0.00 3.99
7095 7464 0.035725 CTGACCCCCTAAACGTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
7101 7470 0.107848 CCCTAAACGTTCCCGAGCAT 60.108 55.000 0.00 0.00 37.88 3.79
7103 7472 1.674817 CCTAAACGTTCCCGAGCATGT 60.675 52.381 0.00 0.00 37.88 3.21
7106 7475 0.606604 AACGTTCCCGAGCATGTACT 59.393 50.000 0.00 0.00 37.88 2.73
7107 7476 0.108804 ACGTTCCCGAGCATGTACTG 60.109 55.000 0.00 0.00 37.88 2.74
7108 7477 0.108804 CGTTCCCGAGCATGTACTGT 60.109 55.000 0.00 0.00 35.63 3.55
7125 7494 9.133627 CATGTACTGTTCATATCTAAATCCTCG 57.866 37.037 0.00 0.00 0.00 4.63
7181 7749 9.623000 CATATCTAAATCCTCATATCCATGCAA 57.377 33.333 0.00 0.00 31.73 4.08
7208 7787 5.048573 CCATCATATGGCATCAATTCGACAA 60.049 40.000 1.65 0.00 44.70 3.18
7235 7814 9.275398 AGCAAAATAAATCACAATTCAACACAT 57.725 25.926 0.00 0.00 0.00 3.21
7243 7822 6.094193 TCACAATTCAACACATGCCATAAA 57.906 33.333 0.00 0.00 0.00 1.40
7350 7929 3.817084 TGCTTTCTTCATCCAAGACACTG 59.183 43.478 0.00 0.00 41.13 3.66
7368 7947 5.503927 ACACTGGCATCTAACATGATTCTT 58.496 37.500 0.00 0.00 0.00 2.52
7379 7958 4.494091 ACATGATTCTTGAATCCTCCGT 57.506 40.909 17.50 8.69 0.00 4.69
7410 7989 0.318762 GCTTCAACCTCTCTCCGTGT 59.681 55.000 0.00 0.00 0.00 4.49
7522 8101 5.483811 CTTAACTTCTCTTTCACCCTCTCC 58.516 45.833 0.00 0.00 0.00 3.71
7528 8107 1.132849 TCTTTCACCCTCTCCTGGTCA 60.133 52.381 0.00 0.00 32.46 4.02
7531 8110 2.044793 TCACCCTCTCCTGGTCAAAT 57.955 50.000 0.00 0.00 32.46 2.32
7540 8119 3.118408 TCTCCTGGTCAAATAACATCCCG 60.118 47.826 0.00 0.00 0.00 5.14
7545 8124 5.047566 TGGTCAAATAACATCCCGATGAT 57.952 39.130 11.59 2.30 41.20 2.45
7590 8169 1.073199 AACCCCTGCTGCTACACAC 59.927 57.895 0.00 0.00 0.00 3.82
7597 8176 2.362736 CTGCTGCTACACACATTGGAT 58.637 47.619 0.00 0.00 0.00 3.41
7610 8189 7.168219 ACACACATTGGATCAATTACTAGTGT 58.832 34.615 5.39 7.44 36.85 3.55
7617 8196 2.949142 TCAATTACTAGTGTTCGCGCA 58.051 42.857 8.75 0.00 0.00 6.09
7618 8197 3.517602 TCAATTACTAGTGTTCGCGCAT 58.482 40.909 8.75 0.00 0.00 4.73
7619 8198 3.305897 TCAATTACTAGTGTTCGCGCATG 59.694 43.478 8.75 0.00 0.00 4.06
7620 8199 2.357327 TTACTAGTGTTCGCGCATGT 57.643 45.000 8.75 0.00 0.00 3.21
7632 8211 4.550577 TCGCGCATGTCAATTGAATTAT 57.449 36.364 10.35 2.60 0.00 1.28
7633 8212 4.526625 TCGCGCATGTCAATTGAATTATC 58.473 39.130 10.35 0.00 0.00 1.75
7634 8213 4.034975 TCGCGCATGTCAATTGAATTATCA 59.965 37.500 10.35 3.83 0.00 2.15
7635 8214 4.377738 CGCGCATGTCAATTGAATTATCAG 59.622 41.667 10.35 0.39 36.78 2.90
7636 8215 4.678287 GCGCATGTCAATTGAATTATCAGG 59.322 41.667 10.35 6.51 36.78 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.501400 CCAAAATGGACAGAGGTTTTCACC 60.501 45.833 0.00 0.00 40.96 4.02
1 2 4.340950 TCCAAAATGGACAGAGGTTTTCAC 59.659 41.667 0.00 0.00 42.67 3.18
2 3 4.541705 TCCAAAATGGACAGAGGTTTTCA 58.458 39.130 0.00 0.00 42.67 2.69
14 15 1.376683 CCGCCGAGTCCAAAATGGA 60.377 57.895 0.00 0.00 45.98 3.41
15 16 3.051392 GCCGCCGAGTCCAAAATGG 62.051 63.158 0.00 0.00 39.43 3.16
16 17 2.485122 GCCGCCGAGTCCAAAATG 59.515 61.111 0.00 0.00 0.00 2.32
17 18 3.124921 CGCCGCCGAGTCCAAAAT 61.125 61.111 0.00 0.00 36.29 1.82
38 39 1.219522 AAAGGGAACACGACGCGAAG 61.220 55.000 15.93 8.81 0.00 3.79
39 40 0.810823 AAAAGGGAACACGACGCGAA 60.811 50.000 15.93 0.00 0.00 4.70
40 41 0.031857 TAAAAGGGAACACGACGCGA 59.968 50.000 15.93 0.00 0.00 5.87
41 42 0.437295 CTAAAAGGGAACACGACGCG 59.563 55.000 3.53 3.53 0.00 6.01
42 43 0.794473 CCTAAAAGGGAACACGACGC 59.206 55.000 0.00 0.00 0.00 5.19
53 54 2.028203 CCACAACAATGCCCCTAAAAGG 60.028 50.000 0.00 0.00 34.30 3.11
54 55 2.896685 TCCACAACAATGCCCCTAAAAG 59.103 45.455 0.00 0.00 0.00 2.27
55 56 2.896685 CTCCACAACAATGCCCCTAAAA 59.103 45.455 0.00 0.00 0.00 1.52
56 57 2.158385 ACTCCACAACAATGCCCCTAAA 60.158 45.455 0.00 0.00 0.00 1.85
57 58 1.427368 ACTCCACAACAATGCCCCTAA 59.573 47.619 0.00 0.00 0.00 2.69
58 59 1.072266 ACTCCACAACAATGCCCCTA 58.928 50.000 0.00 0.00 0.00 3.53
59 60 0.540365 CACTCCACAACAATGCCCCT 60.540 55.000 0.00 0.00 0.00 4.79
60 61 0.827507 ACACTCCACAACAATGCCCC 60.828 55.000 0.00 0.00 0.00 5.80
61 62 1.812571 CTACACTCCACAACAATGCCC 59.187 52.381 0.00 0.00 0.00 5.36
62 63 1.812571 CCTACACTCCACAACAATGCC 59.187 52.381 0.00 0.00 0.00 4.40
63 64 2.226437 CACCTACACTCCACAACAATGC 59.774 50.000 0.00 0.00 0.00 3.56
64 65 3.476552 ACACCTACACTCCACAACAATG 58.523 45.455 0.00 0.00 0.00 2.82
65 66 3.857157 ACACCTACACTCCACAACAAT 57.143 42.857 0.00 0.00 0.00 2.71
66 67 3.275143 CAACACCTACACTCCACAACAA 58.725 45.455 0.00 0.00 0.00 2.83
67 68 2.237643 ACAACACCTACACTCCACAACA 59.762 45.455 0.00 0.00 0.00 3.33
68 69 2.914059 ACAACACCTACACTCCACAAC 58.086 47.619 0.00 0.00 0.00 3.32
69 70 3.070446 CCTACAACACCTACACTCCACAA 59.930 47.826 0.00 0.00 0.00 3.33
70 71 2.631062 CCTACAACACCTACACTCCACA 59.369 50.000 0.00 0.00 0.00 4.17
71 72 2.895404 TCCTACAACACCTACACTCCAC 59.105 50.000 0.00 0.00 0.00 4.02
72 73 3.247948 TCCTACAACACCTACACTCCA 57.752 47.619 0.00 0.00 0.00 3.86
73 74 3.514309 ACATCCTACAACACCTACACTCC 59.486 47.826 0.00 0.00 0.00 3.85
74 75 4.803098 ACATCCTACAACACCTACACTC 57.197 45.455 0.00 0.00 0.00 3.51
75 76 4.710375 CCTACATCCTACAACACCTACACT 59.290 45.833 0.00 0.00 0.00 3.55
76 77 4.142004 CCCTACATCCTACAACACCTACAC 60.142 50.000 0.00 0.00 0.00 2.90
77 78 4.028131 CCCTACATCCTACAACACCTACA 58.972 47.826 0.00 0.00 0.00 2.74
78 79 4.028825 ACCCTACATCCTACAACACCTAC 58.971 47.826 0.00 0.00 0.00 3.18
79 80 4.028131 CACCCTACATCCTACAACACCTA 58.972 47.826 0.00 0.00 0.00 3.08
80 81 2.838202 CACCCTACATCCTACAACACCT 59.162 50.000 0.00 0.00 0.00 4.00
81 82 2.835764 TCACCCTACATCCTACAACACC 59.164 50.000 0.00 0.00 0.00 4.16
82 83 3.675228 CGTCACCCTACATCCTACAACAC 60.675 52.174 0.00 0.00 0.00 3.32
83 84 2.494471 CGTCACCCTACATCCTACAACA 59.506 50.000 0.00 0.00 0.00 3.33
84 85 2.159142 CCGTCACCCTACATCCTACAAC 60.159 54.545 0.00 0.00 0.00 3.32
85 86 2.104967 CCGTCACCCTACATCCTACAA 58.895 52.381 0.00 0.00 0.00 2.41
86 87 1.006281 ACCGTCACCCTACATCCTACA 59.994 52.381 0.00 0.00 0.00 2.74
87 88 1.407979 CACCGTCACCCTACATCCTAC 59.592 57.143 0.00 0.00 0.00 3.18
88 89 1.006281 ACACCGTCACCCTACATCCTA 59.994 52.381 0.00 0.00 0.00 2.94
89 90 0.252103 ACACCGTCACCCTACATCCT 60.252 55.000 0.00 0.00 0.00 3.24
90 91 0.611714 AACACCGTCACCCTACATCC 59.388 55.000 0.00 0.00 0.00 3.51
91 92 3.131577 TGATAACACCGTCACCCTACATC 59.868 47.826 0.00 0.00 0.00 3.06
92 93 3.101437 TGATAACACCGTCACCCTACAT 58.899 45.455 0.00 0.00 0.00 2.29
93 94 2.494471 CTGATAACACCGTCACCCTACA 59.506 50.000 0.00 0.00 0.00 2.74
94 95 2.737679 GCTGATAACACCGTCACCCTAC 60.738 54.545 0.00 0.00 0.00 3.18
95 96 1.479323 GCTGATAACACCGTCACCCTA 59.521 52.381 0.00 0.00 0.00 3.53
96 97 0.249398 GCTGATAACACCGTCACCCT 59.751 55.000 0.00 0.00 0.00 4.34
97 98 0.249398 AGCTGATAACACCGTCACCC 59.751 55.000 0.00 0.00 0.00 4.61
98 99 1.204941 AGAGCTGATAACACCGTCACC 59.795 52.381 0.00 0.00 0.00 4.02
99 100 2.656560 AGAGCTGATAACACCGTCAC 57.343 50.000 0.00 0.00 0.00 3.67
100 101 2.094182 GGAAGAGCTGATAACACCGTCA 60.094 50.000 0.00 0.00 0.00 4.35
101 102 2.166664 AGGAAGAGCTGATAACACCGTC 59.833 50.000 0.00 0.00 0.00 4.79
102 103 2.093973 CAGGAAGAGCTGATAACACCGT 60.094 50.000 0.00 0.00 0.00 4.83
103 104 2.093973 ACAGGAAGAGCTGATAACACCG 60.094 50.000 0.00 0.00 0.00 4.94
104 105 3.618690 ACAGGAAGAGCTGATAACACC 57.381 47.619 0.00 0.00 0.00 4.16
105 106 6.578023 AGAATACAGGAAGAGCTGATAACAC 58.422 40.000 0.00 0.00 0.00 3.32
106 107 6.798427 AGAATACAGGAAGAGCTGATAACA 57.202 37.500 0.00 0.00 0.00 2.41
107 108 7.550906 ACAAAGAATACAGGAAGAGCTGATAAC 59.449 37.037 0.00 0.00 0.00 1.89
108 109 7.624549 ACAAAGAATACAGGAAGAGCTGATAA 58.375 34.615 0.00 0.00 0.00 1.75
109 110 7.187824 ACAAAGAATACAGGAAGAGCTGATA 57.812 36.000 0.00 0.00 0.00 2.15
110 111 6.059787 ACAAAGAATACAGGAAGAGCTGAT 57.940 37.500 0.00 0.00 0.00 2.90
111 112 5.482908 GACAAAGAATACAGGAAGAGCTGA 58.517 41.667 0.00 0.00 0.00 4.26
112 113 4.328440 CGACAAAGAATACAGGAAGAGCTG 59.672 45.833 0.00 0.00 0.00 4.24
113 114 4.499183 CGACAAAGAATACAGGAAGAGCT 58.501 43.478 0.00 0.00 0.00 4.09
114 115 3.619038 CCGACAAAGAATACAGGAAGAGC 59.381 47.826 0.00 0.00 0.00 4.09
115 116 4.822026 ACCGACAAAGAATACAGGAAGAG 58.178 43.478 0.00 0.00 0.00 2.85
116 117 4.617530 CGACCGACAAAGAATACAGGAAGA 60.618 45.833 0.00 0.00 0.00 2.87
117 118 3.612860 CGACCGACAAAGAATACAGGAAG 59.387 47.826 0.00 0.00 0.00 3.46
118 119 3.581755 CGACCGACAAAGAATACAGGAA 58.418 45.455 0.00 0.00 0.00 3.36
119 120 2.673043 GCGACCGACAAAGAATACAGGA 60.673 50.000 0.00 0.00 0.00 3.86
120 121 1.659098 GCGACCGACAAAGAATACAGG 59.341 52.381 0.00 0.00 0.00 4.00
121 122 1.320555 CGCGACCGACAAAGAATACAG 59.679 52.381 0.00 0.00 36.29 2.74
122 123 1.342555 CGCGACCGACAAAGAATACA 58.657 50.000 0.00 0.00 36.29 2.29
123 124 0.024619 GCGCGACCGACAAAGAATAC 59.975 55.000 12.10 0.00 36.29 1.89
124 125 0.388778 TGCGCGACCGACAAAGAATA 60.389 50.000 12.10 0.00 36.29 1.75
125 126 1.019278 ATGCGCGACCGACAAAGAAT 61.019 50.000 12.10 0.00 36.29 2.40
126 127 1.666553 ATGCGCGACCGACAAAGAA 60.667 52.632 12.10 0.00 36.29 2.52
127 128 2.048597 ATGCGCGACCGACAAAGA 60.049 55.556 12.10 0.00 36.29 2.52
128 129 2.096406 CATGCGCGACCGACAAAG 59.904 61.111 12.10 0.00 36.29 2.77
129 130 2.663520 ACATGCGCGACCGACAAA 60.664 55.556 12.10 0.00 36.29 2.83
130 131 3.410516 CACATGCGCGACCGACAA 61.411 61.111 12.10 0.00 36.29 3.18
131 132 4.656117 ACACATGCGCGACCGACA 62.656 61.111 12.10 0.00 36.29 4.35
132 133 4.134187 CACACATGCGCGACCGAC 62.134 66.667 12.10 0.00 36.29 4.79
133 134 4.656117 ACACACATGCGCGACCGA 62.656 61.111 12.10 0.00 36.29 4.69
134 135 3.235292 AAACACACATGCGCGACCG 62.235 57.895 12.10 0.00 37.57 4.79
135 136 1.440353 GAAACACACATGCGCGACC 60.440 57.895 12.10 0.00 0.00 4.79
136 137 1.788203 CGAAACACACATGCGCGAC 60.788 57.895 12.10 0.88 0.00 5.19
137 138 2.548787 CGAAACACACATGCGCGA 59.451 55.556 12.10 0.00 0.00 5.87
138 139 2.499520 CCGAAACACACATGCGCG 60.500 61.111 0.00 0.00 0.00 6.86
139 140 1.440353 GACCGAAACACACATGCGC 60.440 57.895 0.00 0.00 0.00 6.09
140 141 1.206578 GGACCGAAACACACATGCG 59.793 57.895 0.00 0.00 0.00 4.73
141 142 0.951558 AAGGACCGAAACACACATGC 59.048 50.000 0.00 0.00 0.00 4.06
142 143 1.266718 CCAAGGACCGAAACACACATG 59.733 52.381 0.00 0.00 0.00 3.21
143 144 1.604604 CCAAGGACCGAAACACACAT 58.395 50.000 0.00 0.00 0.00 3.21
144 145 0.464735 CCCAAGGACCGAAACACACA 60.465 55.000 0.00 0.00 0.00 3.72
145 146 0.179040 TCCCAAGGACCGAAACACAC 60.179 55.000 0.00 0.00 0.00 3.82
146 147 0.768622 ATCCCAAGGACCGAAACACA 59.231 50.000 0.00 0.00 32.98 3.72
147 148 1.450025 GATCCCAAGGACCGAAACAC 58.550 55.000 0.00 0.00 32.98 3.32
148 149 0.036765 CGATCCCAAGGACCGAAACA 60.037 55.000 0.00 0.00 32.98 2.83
149 150 0.743345 CCGATCCCAAGGACCGAAAC 60.743 60.000 0.00 0.00 32.98 2.78
150 151 1.600107 CCGATCCCAAGGACCGAAA 59.400 57.895 0.00 0.00 32.98 3.46
151 152 3.026431 GCCGATCCCAAGGACCGAA 62.026 63.158 0.00 0.00 32.98 4.30
152 153 3.467226 GCCGATCCCAAGGACCGA 61.467 66.667 0.00 0.00 32.98 4.69
153 154 4.891727 CGCCGATCCCAAGGACCG 62.892 72.222 0.00 0.00 32.98 4.79
154 155 3.325201 AACGCCGATCCCAAGGACC 62.325 63.158 0.00 0.00 32.98 4.46
155 156 2.106683 CAACGCCGATCCCAAGGAC 61.107 63.158 0.00 0.00 32.98 3.85
156 157 2.119484 AACAACGCCGATCCCAAGGA 62.119 55.000 0.00 0.00 35.55 3.36
157 158 0.391927 TAACAACGCCGATCCCAAGG 60.392 55.000 0.00 0.00 0.00 3.61
158 159 1.006832 CTAACAACGCCGATCCCAAG 58.993 55.000 0.00 0.00 0.00 3.61
159 160 0.609151 TCTAACAACGCCGATCCCAA 59.391 50.000 0.00 0.00 0.00 4.12
160 161 0.174845 CTCTAACAACGCCGATCCCA 59.825 55.000 0.00 0.00 0.00 4.37
161 162 0.529992 CCTCTAACAACGCCGATCCC 60.530 60.000 0.00 0.00 0.00 3.85
162 163 0.529992 CCCTCTAACAACGCCGATCC 60.530 60.000 0.00 0.00 0.00 3.36
163 164 0.175073 ACCCTCTAACAACGCCGATC 59.825 55.000 0.00 0.00 0.00 3.69
164 165 0.611714 AACCCTCTAACAACGCCGAT 59.388 50.000 0.00 0.00 0.00 4.18
165 166 0.393820 AAACCCTCTAACAACGCCGA 59.606 50.000 0.00 0.00 0.00 5.54
166 167 1.196127 GAAAACCCTCTAACAACGCCG 59.804 52.381 0.00 0.00 0.00 6.46
167 168 2.223745 TGAAAACCCTCTAACAACGCC 58.776 47.619 0.00 0.00 0.00 5.68
168 169 3.500680 TGATGAAAACCCTCTAACAACGC 59.499 43.478 0.00 0.00 0.00 4.84
169 170 4.755123 AGTGATGAAAACCCTCTAACAACG 59.245 41.667 0.00 0.00 0.00 4.10
170 171 6.635030 AAGTGATGAAAACCCTCTAACAAC 57.365 37.500 0.00 0.00 0.00 3.32
171 172 8.792633 CAATAAGTGATGAAAACCCTCTAACAA 58.207 33.333 0.00 0.00 0.00 2.83
172 173 7.942341 ACAATAAGTGATGAAAACCCTCTAACA 59.058 33.333 0.00 0.00 0.00 2.41
173 174 8.336801 ACAATAAGTGATGAAAACCCTCTAAC 57.663 34.615 0.00 0.00 0.00 2.34
174 175 8.934023 AACAATAAGTGATGAAAACCCTCTAA 57.066 30.769 0.00 0.00 0.00 2.10
175 176 8.792633 CAAACAATAAGTGATGAAAACCCTCTA 58.207 33.333 0.00 0.00 0.00 2.43
176 177 7.255942 CCAAACAATAAGTGATGAAAACCCTCT 60.256 37.037 0.00 0.00 0.00 3.69
177 178 6.868339 CCAAACAATAAGTGATGAAAACCCTC 59.132 38.462 0.00 0.00 0.00 4.30
178 179 6.741240 GCCAAACAATAAGTGATGAAAACCCT 60.741 38.462 0.00 0.00 0.00 4.34
179 180 5.408299 GCCAAACAATAAGTGATGAAAACCC 59.592 40.000 0.00 0.00 0.00 4.11
180 181 5.408299 GGCCAAACAATAAGTGATGAAAACC 59.592 40.000 0.00 0.00 0.00 3.27
181 182 5.988561 TGGCCAAACAATAAGTGATGAAAAC 59.011 36.000 0.61 0.00 0.00 2.43
182 183 6.166984 TGGCCAAACAATAAGTGATGAAAA 57.833 33.333 0.61 0.00 0.00 2.29
183 184 5.798125 TGGCCAAACAATAAGTGATGAAA 57.202 34.783 0.61 0.00 0.00 2.69
184 185 5.245751 ACATGGCCAAACAATAAGTGATGAA 59.754 36.000 10.96 0.00 0.00 2.57
185 186 4.771577 ACATGGCCAAACAATAAGTGATGA 59.228 37.500 10.96 0.00 0.00 2.92
186 187 5.075858 ACATGGCCAAACAATAAGTGATG 57.924 39.130 10.96 0.01 0.00 3.07
187 188 5.951747 AGTACATGGCCAAACAATAAGTGAT 59.048 36.000 10.96 0.00 0.00 3.06
188 189 5.321102 AGTACATGGCCAAACAATAAGTGA 58.679 37.500 10.96 0.00 0.00 3.41
189 190 5.415701 AGAGTACATGGCCAAACAATAAGTG 59.584 40.000 10.96 1.79 0.00 3.16
190 191 5.570320 AGAGTACATGGCCAAACAATAAGT 58.430 37.500 10.96 1.07 0.00 2.24
191 192 6.071952 ACAAGAGTACATGGCCAAACAATAAG 60.072 38.462 10.96 0.00 0.00 1.73
192 193 5.772672 ACAAGAGTACATGGCCAAACAATAA 59.227 36.000 10.96 0.00 0.00 1.40
193 194 5.182950 CACAAGAGTACATGGCCAAACAATA 59.817 40.000 10.96 0.00 0.00 1.90
194 195 4.022068 CACAAGAGTACATGGCCAAACAAT 60.022 41.667 10.96 0.00 0.00 2.71
195 196 3.317711 CACAAGAGTACATGGCCAAACAA 59.682 43.478 10.96 0.00 0.00 2.83
196 197 2.884012 CACAAGAGTACATGGCCAAACA 59.116 45.455 10.96 0.00 0.00 2.83
197 198 2.884639 ACACAAGAGTACATGGCCAAAC 59.115 45.455 10.96 9.02 0.00 2.93
198 199 2.884012 CACACAAGAGTACATGGCCAAA 59.116 45.455 10.96 0.00 0.00 3.28
199 200 2.503331 CACACAAGAGTACATGGCCAA 58.497 47.619 10.96 0.00 0.00 4.52
200 201 1.271325 CCACACAAGAGTACATGGCCA 60.271 52.381 8.56 8.56 0.00 5.36
201 202 1.271379 ACCACACAAGAGTACATGGCC 60.271 52.381 0.00 0.00 31.07 5.36
202 203 2.185004 ACCACACAAGAGTACATGGC 57.815 50.000 0.00 0.00 31.07 4.40
203 204 2.226437 GCAACCACACAAGAGTACATGG 59.774 50.000 0.00 0.00 33.09 3.66
204 205 3.141398 AGCAACCACACAAGAGTACATG 58.859 45.455 0.00 0.00 0.00 3.21
205 206 3.492102 AGCAACCACACAAGAGTACAT 57.508 42.857 0.00 0.00 0.00 2.29
206 207 3.275617 AAGCAACCACACAAGAGTACA 57.724 42.857 0.00 0.00 0.00 2.90
207 208 5.941948 ATAAAGCAACCACACAAGAGTAC 57.058 39.130 0.00 0.00 0.00 2.73
208 209 9.727859 TTATTATAAAGCAACCACACAAGAGTA 57.272 29.630 0.00 0.00 0.00 2.59
209 210 8.630054 TTATTATAAAGCAACCACACAAGAGT 57.370 30.769 0.00 0.00 0.00 3.24
210 211 9.559958 CTTTATTATAAAGCAACCACACAAGAG 57.440 33.333 11.19 0.00 0.00 2.85
224 225 7.381744 GCTTTCGCCTTGCTTTATTATAAAG 57.618 36.000 17.63 17.63 0.00 1.85
241 242 0.951558 TCTTGAAACAGGGCTTTCGC 59.048 50.000 0.00 0.00 33.49 4.70
242 243 3.568538 CATTCTTGAAACAGGGCTTTCG 58.431 45.455 0.00 0.00 33.49 3.46
243 244 3.321968 ACCATTCTTGAAACAGGGCTTTC 59.678 43.478 0.00 0.00 0.00 2.62
244 245 3.070015 CACCATTCTTGAAACAGGGCTTT 59.930 43.478 0.00 0.00 0.00 3.51
245 246 2.629617 CACCATTCTTGAAACAGGGCTT 59.370 45.455 0.00 0.00 0.00 4.35
246 247 2.242043 CACCATTCTTGAAACAGGGCT 58.758 47.619 0.00 0.00 0.00 5.19
247 248 1.963515 ACACCATTCTTGAAACAGGGC 59.036 47.619 0.00 0.00 0.00 5.19
248 249 2.958355 ACACACCATTCTTGAAACAGGG 59.042 45.455 0.00 0.00 0.00 4.45
249 250 4.362279 CAACACACCATTCTTGAAACAGG 58.638 43.478 0.00 0.00 0.00 4.00
250 251 4.097741 TCCAACACACCATTCTTGAAACAG 59.902 41.667 0.00 0.00 0.00 3.16
251 252 4.019858 TCCAACACACCATTCTTGAAACA 58.980 39.130 0.00 0.00 0.00 2.83
252 253 4.338118 TCTCCAACACACCATTCTTGAAAC 59.662 41.667 0.00 0.00 0.00 2.78
253 254 4.531854 TCTCCAACACACCATTCTTGAAA 58.468 39.130 0.00 0.00 0.00 2.69
254 255 4.136796 CTCTCCAACACACCATTCTTGAA 58.863 43.478 0.00 0.00 0.00 2.69
255 256 3.496692 CCTCTCCAACACACCATTCTTGA 60.497 47.826 0.00 0.00 0.00 3.02
256 257 2.816087 CCTCTCCAACACACCATTCTTG 59.184 50.000 0.00 0.00 0.00 3.02
257 258 2.711009 TCCTCTCCAACACACCATTCTT 59.289 45.455 0.00 0.00 0.00 2.52
258 259 2.304180 CTCCTCTCCAACACACCATTCT 59.696 50.000 0.00 0.00 0.00 2.40
259 260 2.704572 CTCCTCTCCAACACACCATTC 58.295 52.381 0.00 0.00 0.00 2.67
260 261 1.271597 GCTCCTCTCCAACACACCATT 60.272 52.381 0.00 0.00 0.00 3.16
261 262 0.326264 GCTCCTCTCCAACACACCAT 59.674 55.000 0.00 0.00 0.00 3.55
297 298 7.383156 TCGTCCCCTCCTTTTATGTATTTAT 57.617 36.000 0.00 0.00 0.00 1.40
298 299 6.183361 CCTCGTCCCCTCCTTTTATGTATTTA 60.183 42.308 0.00 0.00 0.00 1.40
319 325 1.447643 CCCCAGCTAATCACCCTCG 59.552 63.158 0.00 0.00 0.00 4.63
392 398 0.115152 CCCTCCTTTTCCTTTGGCCT 59.885 55.000 3.32 0.00 0.00 5.19
506 514 0.542938 CACTCTGGTCTGGTCTGGGA 60.543 60.000 0.00 0.00 0.00 4.37
507 515 0.542938 TCACTCTGGTCTGGTCTGGG 60.543 60.000 0.00 0.00 0.00 4.45
530 538 1.234615 TTCTCCGCTTTCGCTTTGGG 61.235 55.000 0.00 0.00 0.00 4.12
591 599 1.153823 GATTTGGCTGCTGCTGCTG 60.154 57.895 26.79 16.73 40.48 4.41
818 830 2.972505 CTGCCGCAACAGGAACGT 60.973 61.111 0.00 0.00 33.85 3.99
1248 1593 0.249073 CGAATCTTCCTCGCGGATGT 60.249 55.000 6.13 0.00 39.58 3.06
1365 1710 4.325028 AATTTGCAAGCATGAGTGAACA 57.675 36.364 0.00 0.00 0.00 3.18
1526 1871 0.256177 GTGTCCCCATTTCTCCCTCC 59.744 60.000 0.00 0.00 0.00 4.30
1724 2069 2.507484 CTGATTCACAGCCAACCTCAA 58.493 47.619 0.00 0.00 39.86 3.02
1924 2269 2.040278 TGACTCCCAGTAAAAGCAGCAT 59.960 45.455 0.00 0.00 0.00 3.79
2039 2384 1.618343 GGCTACAAACCAAACATGCCT 59.382 47.619 0.00 0.00 36.52 4.75
2091 2436 3.385193 AACACATGCCTAAGGTTTTGC 57.615 42.857 0.00 0.00 0.00 3.68
2168 2513 8.636213 AGATTTGGCAAATAAATGAGTCTATGG 58.364 33.333 24.39 0.00 0.00 2.74
2258 2603 6.058833 TCATGACTACTTTGCCACAACTAAA 58.941 36.000 0.00 0.00 0.00 1.85
2259 2604 5.616270 TCATGACTACTTTGCCACAACTAA 58.384 37.500 0.00 0.00 0.00 2.24
2260 2605 5.222079 TCATGACTACTTTGCCACAACTA 57.778 39.130 0.00 0.00 0.00 2.24
2261 2606 4.085357 TCATGACTACTTTGCCACAACT 57.915 40.909 0.00 0.00 0.00 3.16
2262 2607 4.537015 GTTCATGACTACTTTGCCACAAC 58.463 43.478 0.00 0.00 0.00 3.32
2263 2608 3.568007 GGTTCATGACTACTTTGCCACAA 59.432 43.478 0.00 0.00 0.00 3.33
2264 2609 3.146066 GGTTCATGACTACTTTGCCACA 58.854 45.455 0.00 0.00 0.00 4.17
2265 2610 3.146066 TGGTTCATGACTACTTTGCCAC 58.854 45.455 0.00 0.00 0.00 5.01
2266 2611 3.500448 TGGTTCATGACTACTTTGCCA 57.500 42.857 0.00 0.00 0.00 4.92
2267 2612 4.037446 TGTTTGGTTCATGACTACTTTGCC 59.963 41.667 0.00 0.00 0.00 4.52
2268 2613 4.976116 GTGTTTGGTTCATGACTACTTTGC 59.024 41.667 0.00 0.00 0.00 3.68
2269 2614 5.204833 CGTGTTTGGTTCATGACTACTTTG 58.795 41.667 0.00 0.00 0.00 2.77
2270 2615 4.261031 GCGTGTTTGGTTCATGACTACTTT 60.261 41.667 0.00 0.00 0.00 2.66
2271 2616 3.250040 GCGTGTTTGGTTCATGACTACTT 59.750 43.478 0.00 0.00 0.00 2.24
2272 2617 2.806244 GCGTGTTTGGTTCATGACTACT 59.194 45.455 0.00 0.00 0.00 2.57
2273 2618 2.095919 GGCGTGTTTGGTTCATGACTAC 60.096 50.000 0.00 0.00 0.00 2.73
2274 2619 2.147958 GGCGTGTTTGGTTCATGACTA 58.852 47.619 0.00 0.00 0.00 2.59
2275 2620 0.951558 GGCGTGTTTGGTTCATGACT 59.048 50.000 0.00 0.00 0.00 3.41
2276 2621 0.039527 GGGCGTGTTTGGTTCATGAC 60.040 55.000 0.00 0.00 0.00 3.06
2277 2622 0.179004 AGGGCGTGTTTGGTTCATGA 60.179 50.000 0.00 0.00 0.00 3.07
2278 2623 0.240945 GAGGGCGTGTTTGGTTCATG 59.759 55.000 0.00 0.00 0.00 3.07
2279 2624 0.179004 TGAGGGCGTGTTTGGTTCAT 60.179 50.000 0.00 0.00 0.00 2.57
2280 2625 0.817634 CTGAGGGCGTGTTTGGTTCA 60.818 55.000 0.00 0.00 0.00 3.18
2281 2626 0.818040 ACTGAGGGCGTGTTTGGTTC 60.818 55.000 0.00 0.00 0.00 3.62
2282 2627 1.101049 CACTGAGGGCGTGTTTGGTT 61.101 55.000 0.00 0.00 0.00 3.67
2283 2628 1.525995 CACTGAGGGCGTGTTTGGT 60.526 57.895 0.00 0.00 0.00 3.67
2284 2629 2.908073 GCACTGAGGGCGTGTTTGG 61.908 63.158 0.00 0.00 34.91 3.28
2285 2630 2.639286 GCACTGAGGGCGTGTTTG 59.361 61.111 0.00 0.00 34.91 2.93
2286 2631 2.594592 GGCACTGAGGGCGTGTTT 60.595 61.111 0.00 0.00 34.91 2.83
2287 2632 3.872603 TGGCACTGAGGGCGTGTT 61.873 61.111 0.00 0.00 34.91 3.32
2288 2633 4.626081 GTGGCACTGAGGGCGTGT 62.626 66.667 11.13 0.00 34.91 4.49
2289 2634 4.624364 TGTGGCACTGAGGGCGTG 62.624 66.667 19.83 0.00 35.84 5.34
2290 2635 4.626081 GTGTGGCACTGAGGGCGT 62.626 66.667 19.83 0.00 35.84 5.68
2291 2636 2.449031 TAAGTGTGGCACTGAGGGCG 62.449 60.000 19.83 0.00 44.62 6.13
2292 2637 0.035056 ATAAGTGTGGCACTGAGGGC 60.035 55.000 19.83 0.00 44.62 5.19
2293 2638 1.679944 CCATAAGTGTGGCACTGAGGG 60.680 57.143 19.83 8.39 44.62 4.30
2294 2639 1.742761 CCATAAGTGTGGCACTGAGG 58.257 55.000 19.83 8.26 44.62 3.86
2302 2647 2.959967 TGGCAAGCCATAAGTGTGG 58.040 52.632 10.24 0.00 41.89 4.17
2311 2656 2.356665 TAGAAAAGTGTGGCAAGCCA 57.643 45.000 10.24 10.24 45.02 4.75
2312 2657 2.623416 AGTTAGAAAAGTGTGGCAAGCC 59.377 45.455 3.61 3.61 0.00 4.35
2313 2658 3.990318 AGTTAGAAAAGTGTGGCAAGC 57.010 42.857 0.00 0.00 0.00 4.01
2314 2659 6.373779 CATGTAGTTAGAAAAGTGTGGCAAG 58.626 40.000 0.00 0.00 0.00 4.01
2315 2660 5.240623 CCATGTAGTTAGAAAAGTGTGGCAA 59.759 40.000 0.00 0.00 0.00 4.52
2316 2661 4.759693 CCATGTAGTTAGAAAAGTGTGGCA 59.240 41.667 0.00 0.00 0.00 4.92
2317 2662 4.760204 ACCATGTAGTTAGAAAAGTGTGGC 59.240 41.667 0.00 0.00 0.00 5.01
2318 2663 5.411669 GGACCATGTAGTTAGAAAAGTGTGG 59.588 44.000 0.00 0.00 0.00 4.17
2319 2664 5.995282 TGGACCATGTAGTTAGAAAAGTGTG 59.005 40.000 0.00 0.00 0.00 3.82
2320 2665 5.995897 GTGGACCATGTAGTTAGAAAAGTGT 59.004 40.000 0.00 0.00 0.00 3.55
2321 2666 5.995282 TGTGGACCATGTAGTTAGAAAAGTG 59.005 40.000 0.00 0.00 0.00 3.16
2322 2667 6.182507 TGTGGACCATGTAGTTAGAAAAGT 57.817 37.500 0.00 0.00 0.00 2.66
2323 2668 7.076842 CATGTGGACCATGTAGTTAGAAAAG 57.923 40.000 0.00 0.00 44.96 2.27
2337 2682 1.486310 GAGTCTATGGCATGTGGACCA 59.514 52.381 10.98 0.00 41.06 4.02
2338 2683 1.486310 TGAGTCTATGGCATGTGGACC 59.514 52.381 10.98 9.83 0.00 4.46
2339 2684 2.988010 TGAGTCTATGGCATGTGGAC 57.012 50.000 10.98 14.64 0.00 4.02
2340 2685 4.508551 AAATGAGTCTATGGCATGTGGA 57.491 40.909 10.98 2.94 0.00 4.02
2341 2686 6.889301 AATAAATGAGTCTATGGCATGTGG 57.111 37.500 10.98 0.37 0.00 4.17
2342 2687 8.292448 GGTAAATAAATGAGTCTATGGCATGTG 58.708 37.037 10.98 3.02 0.00 3.21
2343 2688 7.998383 TGGTAAATAAATGAGTCTATGGCATGT 59.002 33.333 10.98 0.00 0.00 3.21
2344 2689 8.394971 TGGTAAATAAATGAGTCTATGGCATG 57.605 34.615 10.98 0.16 0.00 4.06
2345 2690 8.995027 TTGGTAAATAAATGAGTCTATGGCAT 57.005 30.769 4.88 4.88 0.00 4.40
2346 2691 8.815565 TTTGGTAAATAAATGAGTCTATGGCA 57.184 30.769 0.00 0.00 0.00 4.92
2347 2692 9.899226 GATTTGGTAAATAAATGAGTCTATGGC 57.101 33.333 0.00 0.00 0.00 4.40
2352 2697 8.470002 GGCAAGATTTGGTAAATAAATGAGTCT 58.530 33.333 0.00 0.00 0.00 3.24
2353 2698 8.250332 TGGCAAGATTTGGTAAATAAATGAGTC 58.750 33.333 0.00 0.00 0.00 3.36
2354 2699 8.034804 GTGGCAAGATTTGGTAAATAAATGAGT 58.965 33.333 0.00 0.00 0.00 3.41
2355 2700 8.034215 TGTGGCAAGATTTGGTAAATAAATGAG 58.966 33.333 0.00 0.00 0.00 2.90
2356 2701 7.816995 GTGTGGCAAGATTTGGTAAATAAATGA 59.183 33.333 0.00 0.00 0.00 2.57
2357 2702 7.818930 AGTGTGGCAAGATTTGGTAAATAAATG 59.181 33.333 0.00 0.00 0.00 2.32
2358 2703 7.906327 AGTGTGGCAAGATTTGGTAAATAAAT 58.094 30.769 0.00 0.00 0.00 1.40
2359 2704 7.296628 AGTGTGGCAAGATTTGGTAAATAAA 57.703 32.000 0.00 0.00 0.00 1.40
2360 2705 6.909550 AGTGTGGCAAGATTTGGTAAATAA 57.090 33.333 0.00 0.00 0.00 1.40
2361 2706 6.266558 ACAAGTGTGGCAAGATTTGGTAAATA 59.733 34.615 0.00 0.00 0.00 1.40
2362 2707 5.070313 ACAAGTGTGGCAAGATTTGGTAAAT 59.930 36.000 0.00 0.00 0.00 1.40
2363 2708 4.404073 ACAAGTGTGGCAAGATTTGGTAAA 59.596 37.500 0.00 0.00 0.00 2.01
2364 2709 3.957497 ACAAGTGTGGCAAGATTTGGTAA 59.043 39.130 0.00 0.00 0.00 2.85
2365 2710 3.317711 CACAAGTGTGGCAAGATTTGGTA 59.682 43.478 3.39 0.00 42.10 3.25
2366 2711 2.101249 CACAAGTGTGGCAAGATTTGGT 59.899 45.455 3.39 0.00 42.10 3.67
2367 2712 2.746269 CACAAGTGTGGCAAGATTTGG 58.254 47.619 3.39 0.00 42.10 3.28
2378 2723 0.752054 AAATGGCCACCACAAGTGTG 59.248 50.000 8.16 4.38 45.74 3.82
2379 2724 1.138661 CAAAATGGCCACCACAAGTGT 59.861 47.619 8.16 0.00 45.74 3.55
2380 2725 1.138661 ACAAAATGGCCACCACAAGTG 59.861 47.619 8.16 1.91 46.83 3.16
2381 2726 1.494960 ACAAAATGGCCACCACAAGT 58.505 45.000 8.16 0.00 35.80 3.16
2382 2727 2.482864 GAACAAAATGGCCACCACAAG 58.517 47.619 8.16 0.00 35.80 3.16
2383 2728 1.202463 CGAACAAAATGGCCACCACAA 60.202 47.619 8.16 0.00 35.80 3.33
2384 2729 0.387202 CGAACAAAATGGCCACCACA 59.613 50.000 8.16 0.00 35.80 4.17
2385 2730 0.943835 GCGAACAAAATGGCCACCAC 60.944 55.000 8.16 0.00 35.80 4.16
2386 2731 1.365633 GCGAACAAAATGGCCACCA 59.634 52.632 8.16 0.00 38.19 4.17
2387 2732 1.374125 GGCGAACAAAATGGCCACC 60.374 57.895 8.16 0.00 43.07 4.61
2388 2733 4.260194 GGCGAACAAAATGGCCAC 57.740 55.556 8.16 0.00 43.07 5.01
2390 2735 0.037419 ATGTGGCGAACAAAATGGCC 60.037 50.000 0.00 0.00 43.61 5.36
2391 2736 1.794512 AATGTGGCGAACAAAATGGC 58.205 45.000 0.00 0.00 43.61 4.40
2392 2737 3.606615 GCAAAATGTGGCGAACAAAATGG 60.607 43.478 0.00 0.00 43.61 3.16
2393 2738 3.543670 GCAAAATGTGGCGAACAAAATG 58.456 40.909 0.00 0.00 43.61 2.32
2394 2739 2.547634 GGCAAAATGTGGCGAACAAAAT 59.452 40.909 0.00 0.00 43.61 1.82
2395 2740 1.936547 GGCAAAATGTGGCGAACAAAA 59.063 42.857 0.00 0.00 43.61 2.44
2396 2741 1.576356 GGCAAAATGTGGCGAACAAA 58.424 45.000 0.00 0.00 43.61 2.83
2397 2742 3.280920 GGCAAAATGTGGCGAACAA 57.719 47.368 0.00 0.00 43.61 2.83
2404 2749 7.095271 CCACAACTAAAATTAGGCAAAATGTGG 60.095 37.037 16.57 16.57 35.08 4.17
2405 2750 7.571059 GCCACAACTAAAATTAGGCAAAATGTG 60.571 37.037 5.27 0.00 40.29 3.21
2406 2751 6.426633 GCCACAACTAAAATTAGGCAAAATGT 59.573 34.615 5.27 0.00 40.29 2.71
2407 2752 6.426328 TGCCACAACTAAAATTAGGCAAAATG 59.574 34.615 0.00 0.00 46.55 2.32
2408 2753 6.529220 TGCCACAACTAAAATTAGGCAAAAT 58.471 32.000 0.00 0.00 46.55 1.82
2409 2754 5.918608 TGCCACAACTAAAATTAGGCAAAA 58.081 33.333 0.00 0.00 46.55 2.44
2410 2755 5.537300 TGCCACAACTAAAATTAGGCAAA 57.463 34.783 0.00 0.00 46.55 3.68
2413 2758 5.538118 ACTTTGCCACAACTAAAATTAGGC 58.462 37.500 5.27 0.00 40.93 3.93
2414 2759 7.882179 ACTACTTTGCCACAACTAAAATTAGG 58.118 34.615 5.27 0.00 35.08 2.69
2415 2760 8.564574 TGACTACTTTGCCACAACTAAAATTAG 58.435 33.333 0.00 0.00 36.82 1.73
2416 2761 8.453238 TGACTACTTTGCCACAACTAAAATTA 57.547 30.769 0.00 0.00 0.00 1.40
2417 2762 7.341445 TGACTACTTTGCCACAACTAAAATT 57.659 32.000 0.00 0.00 0.00 1.82
2418 2763 6.952773 TGACTACTTTGCCACAACTAAAAT 57.047 33.333 0.00 0.00 0.00 1.82
2419 2764 6.544197 TCATGACTACTTTGCCACAACTAAAA 59.456 34.615 0.00 0.00 0.00 1.52
2458 2803 5.888161 CCAGACAAAACTGAATTAGGGCTAT 59.112 40.000 0.00 0.00 39.94 2.97
2496 2841 5.066375 GGACAGCATGCTATTAATGACACAA 59.934 40.000 22.19 0.00 42.53 3.33
2630 2983 3.561725 GCTTATCCAGTGACCACTTATGC 59.438 47.826 0.00 2.10 40.20 3.14
2854 3207 7.615365 ACAGCTTATTGTTCCATTATGAAAGGA 59.385 33.333 0.00 0.00 0.00 3.36
2917 3270 2.975732 TGCCAGCTCTGAACTGATAG 57.024 50.000 9.56 0.00 37.32 2.08
3022 3375 1.804151 GCAATAGTCTGCGGAACAACA 59.196 47.619 0.00 0.00 31.50 3.33
3127 3480 9.693739 AAAACATGTTAAGTGGGATATGTATGA 57.306 29.630 12.39 0.00 29.15 2.15
3172 3525 2.705658 TCTACCTCATGGCCCATACTTG 59.294 50.000 0.00 0.00 36.63 3.16
3439 3794 2.165437 TGTTGGAACCACAAAGACAAGC 59.835 45.455 0.00 0.00 31.17 4.01
3698 4053 2.487934 GTCGCATCAGGAACATAGCAT 58.512 47.619 0.00 0.00 0.00 3.79
3861 4216 0.868406 GTGGTGCTTTCAACTCTCCG 59.132 55.000 0.00 0.00 0.00 4.63
4049 4404 2.286425 ACCTCACCCCCTCCATGG 60.286 66.667 4.97 4.97 0.00 3.66
4106 4461 5.808366 TGACTATGCTATTACCTTCAGGG 57.192 43.478 0.00 0.00 40.27 4.45
4139 4494 1.085091 GACTTGCTGAGCAGTCATGG 58.915 55.000 22.93 9.06 40.61 3.66
4140 4495 1.804601 TGACTTGCTGAGCAGTCATG 58.195 50.000 25.15 11.68 39.62 3.07
4275 4630 3.551454 GCTGCAACAACATGACATGAGTT 60.551 43.478 22.19 20.02 34.33 3.01
4288 4643 0.694771 AGAGGATGGAGCTGCAACAA 59.305 50.000 13.45 0.00 0.00 2.83
4479 4834 3.330267 AGGAAGATCGCTCACTTGAAAC 58.670 45.455 0.00 0.00 0.00 2.78
5672 6033 0.813210 GGCATTTGAGGAGCTCTCGG 60.813 60.000 14.64 2.54 45.32 4.63
5719 6082 2.149578 GAAGATGCTCCAATGCGCTAT 58.850 47.619 9.73 0.00 35.36 2.97
5779 6142 3.085119 GCATCTGCATTGGGGTGCC 62.085 63.158 0.00 0.00 44.43 5.01
5780 6143 2.497770 GCATCTGCATTGGGGTGC 59.502 61.111 0.00 0.00 45.25 5.01
6032 6396 2.362503 ATCTGACGAGGCCGGTCA 60.363 61.111 24.98 24.98 40.78 4.02
6345 6709 3.562973 GGATGATCTGTACAAGTGCATGG 59.437 47.826 0.00 0.00 0.00 3.66
6546 6911 2.461695 TGGTTCTCTCCTGATCCACTC 58.538 52.381 0.00 0.00 32.64 3.51
6590 6955 0.679002 AATCTGGTGCTGCGCAATCT 60.679 50.000 13.05 0.00 41.47 2.40
6654 7019 1.888512 TCTTGAAAGGTGCCTTGATGC 59.111 47.619 4.00 0.00 36.26 3.91
6867 7232 6.131544 ACATCAGTAACAAAACAGGAACAC 57.868 37.500 0.00 0.00 0.00 3.32
6954 7323 6.027749 CGTGATTTGCCAATAGTAAAACTCC 58.972 40.000 0.00 0.00 33.51 3.85
7092 7461 1.262417 TGAACAGTACATGCTCGGGA 58.738 50.000 0.00 0.00 0.00 5.14
7095 7464 7.930513 TTTAGATATGAACAGTACATGCTCG 57.069 36.000 0.00 0.00 0.00 5.03
7101 7470 8.234136 ACGAGGATTTAGATATGAACAGTACA 57.766 34.615 0.00 0.00 0.00 2.90
7108 7477 9.371136 GCATGAATACGAGGATTTAGATATGAA 57.629 33.333 0.00 0.00 0.00 2.57
7146 7704 4.564041 AGGATTTAGATATGAGCAGTGCG 58.436 43.478 10.00 0.00 0.00 5.34
7208 7787 9.107177 TGTGTTGAATTGTGATTTATTTTGCTT 57.893 25.926 0.00 0.00 0.00 3.91
7230 7809 9.499479 TTGTTGAATTTTATTTATGGCATGTGT 57.501 25.926 10.98 0.00 0.00 3.72
7263 7842 6.598503 AGGCAGATGATTCATTCTTGTATCA 58.401 36.000 0.00 0.00 41.86 2.15
7350 7929 6.489361 AGGATTCAAGAATCATGTTAGATGCC 59.511 38.462 20.73 3.66 46.77 4.40
7368 7947 1.610624 GCAAAGGACACGGAGGATTCA 60.611 52.381 0.00 0.00 0.00 2.57
7379 7958 1.408702 GGTTGAAGCTTGCAAAGGACA 59.591 47.619 2.10 0.00 46.35 4.02
7410 7989 8.621532 AAGAAGACAATACAACAATTGAGCTA 57.378 30.769 13.59 0.00 38.84 3.32
7473 8052 8.874816 GCGTTAAGAGAAAGAAGATAGATTTGT 58.125 33.333 0.00 0.00 0.00 2.83
7480 8059 9.924650 AAGTTAAGCGTTAAGAGAAAGAAGATA 57.075 29.630 0.00 0.00 0.00 1.98
7489 8068 7.381678 GTGAAAGAGAAGTTAAGCGTTAAGAGA 59.618 37.037 0.00 0.00 0.00 3.10
7494 8073 4.992951 GGGTGAAAGAGAAGTTAAGCGTTA 59.007 41.667 0.00 0.00 0.00 3.18
7497 8076 3.665190 AGGGTGAAAGAGAAGTTAAGCG 58.335 45.455 0.00 0.00 0.00 4.68
7522 8101 4.450976 TCATCGGGATGTTATTTGACCAG 58.549 43.478 8.41 0.00 39.72 4.00
7545 8124 6.609616 TGGGTGTAACAGTGATAGTGATATCA 59.390 38.462 0.00 0.00 39.98 2.15
7548 8127 5.717654 TGTGGGTGTAACAGTGATAGTGATA 59.282 40.000 0.00 0.00 39.98 2.15
7590 8169 6.422223 GCGAACACTAGTAATTGATCCAATG 58.578 40.000 0.00 0.00 34.04 2.82
7597 8176 2.949142 TGCGCGAACACTAGTAATTGA 58.051 42.857 12.10 0.00 0.00 2.57
7610 8189 2.917701 ATTCAATTGACATGCGCGAA 57.082 40.000 12.10 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.