Multiple sequence alignment - TraesCS5A01G123800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G123800 chr5A 100.000 6357 0 0 1 6357 270176876 270183232 0.000000e+00 11740.0
1 TraesCS5A01G123800 chr5A 100.000 32 0 0 2063 2094 115079829 115079860 6.880000e-05 60.2
2 TraesCS5A01G123800 chr5A 100.000 30 0 0 2065 2094 622229717 622229688 8.900000e-04 56.5
3 TraesCS5A01G123800 chr5B 94.576 4517 180 37 211 4688 222366698 222371188 0.000000e+00 6924.0
4 TraesCS5A01G123800 chr5B 95.345 623 25 2 4687 5309 222371366 222371984 0.000000e+00 987.0
5 TraesCS5A01G123800 chr5B 89.267 559 30 7 5692 6226 222372905 222373457 0.000000e+00 673.0
6 TraesCS5A01G123800 chr5B 94.372 231 9 1 1 231 222366434 222366660 1.010000e-92 351.0
7 TraesCS5A01G123800 chr5B 85.271 129 17 2 6230 6357 222373492 222373619 1.440000e-26 132.0
8 TraesCS5A01G123800 chr5B 100.000 30 0 0 2065 2094 467139692 467139663 8.900000e-04 56.5
9 TraesCS5A01G123800 chr5B 90.476 42 4 0 5593 5634 477487593 477487552 8.900000e-04 56.5
10 TraesCS5A01G123800 chr5B 100.000 30 0 0 2065 2094 561695782 561695811 8.900000e-04 56.5
11 TraesCS5A01G123800 chr5D 96.692 2479 60 8 2222 4688 209310808 209313276 0.000000e+00 4104.0
12 TraesCS5A01G123800 chr5D 95.434 1095 40 4 1 1087 209308892 209309984 0.000000e+00 1736.0
13 TraesCS5A01G123800 chr5D 95.185 623 29 1 4687 5309 209313455 209314076 0.000000e+00 983.0
14 TraesCS5A01G123800 chr5D 90.976 543 29 6 5692 6226 209314191 209314721 0.000000e+00 713.0
15 TraesCS5A01G123800 chr5D 95.349 258 12 0 1778 2035 209310530 209310787 1.650000e-110 411.0
16 TraesCS5A01G123800 chr5D 83.777 413 33 18 1111 1500 209309973 209310374 1.680000e-95 361.0
17 TraesCS5A01G123800 chr5D 95.070 142 6 1 5362 5502 511954847 511954706 8.300000e-54 222.0
18 TraesCS5A01G123800 chr5D 91.406 128 11 0 6230 6357 209314760 209314887 6.550000e-40 176.0
19 TraesCS5A01G123800 chr5D 89.655 87 7 1 5503 5587 456595137 456595051 6.740000e-20 110.0
20 TraesCS5A01G123800 chr5D 88.506 87 8 1 5503 5587 406475788 406475874 3.130000e-18 104.0
21 TraesCS5A01G123800 chr5D 88.506 87 8 1 5503 5587 443904892 443904978 3.130000e-18 104.0
22 TraesCS5A01G123800 chr5D 88.506 87 8 1 5503 5587 530409305 530409219 3.130000e-18 104.0
23 TraesCS5A01G123800 chr3B 90.379 2214 165 24 2176 4360 580038349 580036155 0.000000e+00 2865.0
24 TraesCS5A01G123800 chr3B 81.837 991 113 36 4351 5295 580036130 580035161 0.000000e+00 771.0
25 TraesCS5A01G123800 chr3B 88.845 251 26 2 1810 2059 580038611 580038362 2.230000e-79 307.0
26 TraesCS5A01G123800 chr3B 100.000 29 0 0 2066 2094 578630834 578630806 3.000000e-03 54.7
27 TraesCS5A01G123800 chr3A 89.415 2069 174 21 2327 4361 583707292 583705235 0.000000e+00 2566.0
28 TraesCS5A01G123800 chr3A 87.075 441 53 3 4751 5190 583704847 583704410 4.430000e-136 496.0
29 TraesCS5A01G123800 chr3A 88.959 317 26 5 4358 4669 583705205 583704893 3.600000e-102 383.0
30 TraesCS5A01G123800 chr3A 91.379 174 14 1 1827 1999 583707479 583707306 2.960000e-58 237.0
31 TraesCS5A01G123800 chr3A 96.479 142 4 1 5362 5502 598347104 598346963 3.830000e-57 233.0
32 TraesCS5A01G123800 chr3D 92.857 1218 77 6 2176 3390 442504081 442502871 0.000000e+00 1759.0
33 TraesCS5A01G123800 chr3D 87.564 780 70 13 4358 5118 442500767 442499996 0.000000e+00 878.0
34 TraesCS5A01G123800 chr3D 86.903 733 60 18 3652 4360 442502579 442501859 0.000000e+00 789.0
35 TraesCS5A01G123800 chr3D 86.561 253 20 9 1811 2059 442504336 442504094 3.780000e-67 267.0
36 TraesCS5A01G123800 chr3D 95.105 143 6 1 5362 5503 365051841 365051983 2.310000e-54 224.0
37 TraesCS5A01G123800 chr3D 95.105 143 6 1 5362 5503 522192466 522192324 2.310000e-54 224.0
38 TraesCS5A01G123800 chr3D 95.070 142 6 1 5362 5502 77158545 77158686 8.300000e-54 222.0
39 TraesCS5A01G123800 chr3D 77.848 316 35 22 291 597 442505590 442505301 5.100000e-36 163.0
40 TraesCS5A01G123800 chr3D 91.111 90 5 2 5501 5587 28131531 28131442 1.120000e-22 119.0
41 TraesCS5A01G123800 chr3D 100.000 40 0 0 4026 4065 467570101 467570140 2.460000e-09 75.0
42 TraesCS5A01G123800 chr7D 94.558 147 6 2 5362 5506 634581744 634581598 6.410000e-55 226.0
43 TraesCS5A01G123800 chr7D 91.954 87 5 1 5503 5587 626028657 626028743 3.110000e-23 121.0
44 TraesCS5A01G123800 chr7D 87.500 96 8 3 5495 5586 572185514 572185419 2.420000e-19 108.0
45 TraesCS5A01G123800 chrUn 95.105 143 6 1 5362 5503 273226909 273227051 2.310000e-54 224.0
46 TraesCS5A01G123800 chr4B 95.070 142 6 1 5362 5502 672247558 672247699 8.300000e-54 222.0
47 TraesCS5A01G123800 chr4B 80.159 252 48 2 527 777 126327524 126327774 3.030000e-43 187.0
48 TraesCS5A01G123800 chr4B 100.000 28 0 0 2065 2092 163838593 163838620 1.200000e-02 52.8
49 TraesCS5A01G123800 chr1D 95.070 142 6 1 5362 5502 10337548 10337407 8.300000e-54 222.0
50 TraesCS5A01G123800 chr1D 89.773 88 6 2 5503 5587 28554191 28554104 6.740000e-20 110.0
51 TraesCS5A01G123800 chr4A 81.349 252 45 2 527 777 501966500 501966750 3.000000e-48 204.0
52 TraesCS5A01G123800 chr4D 80.876 251 46 2 527 776 89426915 89427164 5.030000e-46 196.0
53 TraesCS5A01G123800 chr2B 91.954 87 5 1 5503 5587 747817772 747817686 3.110000e-23 121.0
54 TraesCS5A01G123800 chr2B 100.000 31 0 0 2065 2095 776409702 776409672 2.480000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G123800 chr5A 270176876 270183232 6356 False 11740.000000 11740 100.000000 1 6357 1 chr5A.!!$F2 6356
1 TraesCS5A01G123800 chr5B 222366434 222373619 7185 False 1813.400000 6924 91.766200 1 6357 5 chr5B.!!$F2 6356
2 TraesCS5A01G123800 chr5D 209308892 209314887 5995 False 1212.000000 4104 92.688429 1 6357 7 chr5D.!!$F3 6356
3 TraesCS5A01G123800 chr3B 580035161 580038611 3450 True 1314.333333 2865 87.020333 1810 5295 3 chr3B.!!$R2 3485
4 TraesCS5A01G123800 chr3A 583704410 583707479 3069 True 920.500000 2566 89.207000 1827 5190 4 chr3A.!!$R2 3363
5 TraesCS5A01G123800 chr3D 442499996 442505590 5594 True 771.200000 1759 86.346600 291 5118 5 chr3D.!!$R3 4827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 490 0.604780 AACGAGCAGCAGCAGTGAAT 60.605 50.000 3.17 0.00 45.49 2.57 F
1386 1510 0.170561 GCTACTCGTCACATCACCGT 59.829 55.000 0.00 0.00 0.00 4.83 F
2212 2480 0.179103 CGGGATTTTTGGAGCATGCC 60.179 55.000 15.66 5.80 0.00 4.40 F
2220 2488 2.584835 TTGGAGCATGCCCATATACC 57.415 50.000 23.25 12.62 33.04 2.73 F
3621 4021 3.261580 CGTCTGTGGCAATGATCACTAA 58.738 45.455 0.00 0.00 35.15 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2420 0.036577 GAGTGATGAGCAGTGGCAGT 60.037 55.000 0.00 0.0 44.61 4.40 R
2552 2822 2.020720 TCGTGGCACAGTGTTGAAAAT 58.979 42.857 19.09 0.0 41.80 1.82 R
3746 4172 1.265365 GAAGAACCAGAAGCACACAGC 59.735 52.381 0.00 0.0 46.19 4.40 R
3985 4419 6.428159 GGTCAAGTTTCATGTCTCAGTATTGT 59.572 38.462 0.00 0.0 0.00 2.71 R
5586 7357 0.036164 TGACAGATGGTTCCCGTTGG 59.964 55.000 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 7.609146 TCAAGCAGTGAAGATGTTATCAAATCT 59.391 33.333 0.00 0.00 34.58 2.40
185 186 6.615088 TCTGAAGCAATATCAAAGCAAAGTC 58.385 36.000 0.00 0.00 0.00 3.01
216 217 3.311322 TCTGGTGCTAAAGAAAACACACG 59.689 43.478 0.00 0.00 34.69 4.49
222 277 0.859788 AAAGAAAACACACGCACGCG 60.860 50.000 10.36 10.36 46.03 6.01
239 294 2.126888 GCGCACACATGGTTTCCG 60.127 61.111 0.30 0.00 0.00 4.30
369 424 2.159531 CGTGCAATTCATGACCGTCAAT 60.160 45.455 5.07 0.00 33.49 2.57
419 474 0.802994 ATGGCAATGCATCGCAAACG 60.803 50.000 12.49 0.00 43.62 3.60
433 488 1.227645 AAACGAGCAGCAGCAGTGA 60.228 52.632 3.17 0.00 45.49 3.41
435 490 0.604780 AACGAGCAGCAGCAGTGAAT 60.605 50.000 3.17 0.00 45.49 2.57
499 561 2.425312 GAGAATCGCACAGAGAGAAGGA 59.575 50.000 0.00 0.00 0.00 3.36
512 574 4.773149 AGAGAGAAGGAAGTGTAACGGAAT 59.227 41.667 0.00 0.00 45.86 3.01
857 930 2.759973 CCCTGGTAGCGGCAGAGA 60.760 66.667 1.45 0.00 0.00 3.10
1089 1177 1.896220 TGCCAAACGCATTTCTCTCT 58.104 45.000 0.00 0.00 44.64 3.10
1124 1212 3.316308 AGCACAAAAACGCATTTCTCTCT 59.684 39.130 0.00 0.00 0.00 3.10
1125 1213 3.423206 GCACAAAAACGCATTTCTCTCTG 59.577 43.478 0.00 0.00 0.00 3.35
1126 1214 3.423206 CACAAAAACGCATTTCTCTCTGC 59.577 43.478 0.00 0.00 35.02 4.26
1127 1215 3.316308 ACAAAAACGCATTTCTCTCTGCT 59.684 39.130 0.00 0.00 36.23 4.24
1128 1216 4.515191 ACAAAAACGCATTTCTCTCTGCTA 59.485 37.500 0.00 0.00 36.23 3.49
1129 1217 4.935885 AAAACGCATTTCTCTCTGCTAG 57.064 40.909 0.00 0.00 36.23 3.42
1131 1219 1.216122 CGCATTTCTCTCTGCTAGCC 58.784 55.000 13.29 0.00 36.23 3.93
1132 1220 1.472201 CGCATTTCTCTCTGCTAGCCA 60.472 52.381 13.29 0.00 36.23 4.75
1133 1221 2.806019 CGCATTTCTCTCTGCTAGCCAT 60.806 50.000 13.29 0.00 36.23 4.40
1136 1224 1.418334 TTCTCTCTGCTAGCCATCCC 58.582 55.000 13.29 0.00 0.00 3.85
1137 1225 0.825425 TCTCTCTGCTAGCCATCCCG 60.825 60.000 13.29 0.00 0.00 5.14
1138 1226 1.814772 CTCTCTGCTAGCCATCCCGG 61.815 65.000 13.29 0.00 38.11 5.73
1139 1227 2.041922 TCTGCTAGCCATCCCGGT 60.042 61.111 13.29 0.00 36.97 5.28
1181 1277 1.344953 CCGGATCATCAACCCCTCCA 61.345 60.000 0.00 0.00 0.00 3.86
1253 1354 1.374252 CCTCCGTCGACCAAGGTTG 60.374 63.158 18.45 0.00 0.00 3.77
1355 1471 3.196207 ATCCACCAACGCCAGCACT 62.196 57.895 0.00 0.00 0.00 4.40
1360 1484 3.730761 CAACGCCAGCACTGCCTC 61.731 66.667 0.00 0.00 0.00 4.70
1386 1510 0.170561 GCTACTCGTCACATCACCGT 59.829 55.000 0.00 0.00 0.00 4.83
1564 1739 6.177310 TCTCCTGTATGTCTCTAGGTCTAC 57.823 45.833 0.00 0.00 0.00 2.59
1754 1931 3.557595 GCTAGTGATTAGTCATGGTGTGC 59.442 47.826 0.00 0.00 36.60 4.57
1953 2217 3.011257 TCCTTAAGCTTGGCCATAAGGTT 59.989 43.478 29.60 26.11 46.54 3.50
2004 2269 4.155826 CCTGCTTTCGTCATTTATGGTTCA 59.844 41.667 0.00 0.00 0.00 3.18
2027 2295 8.306313 TCAAGAATGTAAGATAAGCTACTGGA 57.694 34.615 0.00 0.00 0.00 3.86
2062 2330 2.729467 CGTCCACTCTCATCAGTCGAAC 60.729 54.545 0.00 0.00 0.00 3.95
2063 2331 2.229062 GTCCACTCTCATCAGTCGAACA 59.771 50.000 0.00 0.00 0.00 3.18
2120 2388 2.032528 GCCCTGCTACAGTGCACA 59.967 61.111 21.04 0.00 35.08 4.57
2152 2420 2.036098 CCTGGCACATTCCTGGCA 59.964 61.111 0.00 0.00 43.99 4.92
2154 2422 1.303888 CTGGCACATTCCTGGCACT 60.304 57.895 0.00 0.00 41.52 4.40
2212 2480 0.179103 CGGGATTTTTGGAGCATGCC 60.179 55.000 15.66 5.80 0.00 4.40
2220 2488 2.584835 TTGGAGCATGCCCATATACC 57.415 50.000 23.25 12.62 33.04 2.73
2287 2555 8.201554 TCTTATGAACACAATGAGCATAAGTC 57.798 34.615 20.95 0.00 40.84 3.01
2843 3113 4.513442 ACCGCTTAAGCTGTGATGAAATA 58.487 39.130 21.85 0.00 37.12 1.40
2849 3119 9.322776 CGCTTAAGCTGTGATGAAATAATTATC 57.677 33.333 24.33 0.00 39.32 1.75
2994 3264 3.887716 GCCATGCATGAGATAGGAAAAGT 59.112 43.478 28.31 0.00 0.00 2.66
3020 3293 4.016444 ACTGCATGTATGTTAAAGGTGGG 58.984 43.478 0.00 0.00 0.00 4.61
3045 3318 5.690409 ACACGTTCGTAATTCAGCATATAGG 59.310 40.000 0.00 0.00 0.00 2.57
3411 3759 8.076781 GGTACCTTTCTGAGTTTTCATTCTTTC 58.923 37.037 4.06 0.00 31.68 2.62
3570 3924 6.134061 CGACAAAGGAAGTTGCTTTTACTAC 58.866 40.000 18.60 8.42 35.81 2.73
3621 4021 3.261580 CGTCTGTGGCAATGATCACTAA 58.738 45.455 0.00 0.00 35.15 2.24
3637 4037 7.265673 TGATCACTAACATTAACAGAGTAGCC 58.734 38.462 0.00 0.00 0.00 3.93
3659 4066 7.396418 AGCCAAAATTGTCATATTGGAACATT 58.604 30.769 8.25 0.00 44.01 2.71
3660 4067 7.884354 AGCCAAAATTGTCATATTGGAACATTT 59.116 29.630 8.25 0.00 44.01 2.32
3661 4068 7.964011 GCCAAAATTGTCATATTGGAACATTTG 59.036 33.333 8.25 0.00 44.01 2.32
3662 4069 9.217278 CCAAAATTGTCATATTGGAACATTTGA 57.783 29.630 0.00 0.00 44.01 2.69
3755 4181 3.738830 ATTGAATTGTTGCTGTGTGCT 57.261 38.095 0.00 0.00 43.37 4.40
3873 4299 7.149569 TGGATCTAATGCAAACAGAAAGAAG 57.850 36.000 0.00 0.00 0.00 2.85
3966 4400 8.691797 AGTTAACCTTGTTTATGACAATTGTGT 58.308 29.630 17.58 7.06 46.58 3.72
3985 4419 7.987750 TTGTGTGGAGTGCAATTAACTATAA 57.012 32.000 0.00 0.00 0.00 0.98
4185 4621 5.726980 TTCAGCTATTTGGACAATTTGCT 57.273 34.783 9.08 9.08 34.74 3.91
4626 6177 8.704849 TGAAGATAGGTTTTTCTTTTGGATCA 57.295 30.769 0.00 0.00 32.46 2.92
4724 6461 2.489329 CTGGTCAAAGTGTGGGCAATAG 59.511 50.000 0.00 0.00 0.00 1.73
4748 6490 1.925847 CACAGTTTTGCATGCAAACGT 59.074 42.857 38.41 31.01 44.39 3.99
4749 6491 1.925847 ACAGTTTTGCATGCAAACGTG 59.074 42.857 38.41 35.17 44.39 4.49
4782 6524 4.445052 CACTGACGTTGTGTTTCCGTAATA 59.555 41.667 12.56 0.00 34.51 0.98
5083 6826 4.084287 ACCATTGTGGCATGGATCATATC 58.916 43.478 12.41 0.00 42.67 1.63
5128 6878 2.169352 GCTGGCTCTCACTCTGGAATTA 59.831 50.000 0.00 0.00 0.00 1.40
5151 6901 1.052124 TCGGTGTTTCCTGGTCCTGT 61.052 55.000 0.00 0.00 0.00 4.00
5153 6903 1.337823 CGGTGTTTCCTGGTCCTGTAG 60.338 57.143 0.00 0.00 0.00 2.74
5266 7037 7.962918 GCATAAAGTTAATGGTGTGAGTACTTG 59.037 37.037 0.00 0.00 0.00 3.16
5305 7076 4.322080 TCGTCTGATGTGTCTCTTGTTT 57.678 40.909 0.00 0.00 0.00 2.83
5309 7080 5.332883 CGTCTGATGTGTCTCTTGTTTCAAG 60.333 44.000 3.44 3.44 0.00 3.02
5310 7081 5.755375 GTCTGATGTGTCTCTTGTTTCAAGA 59.245 40.000 10.97 10.97 0.00 3.02
5313 7084 5.525012 TGATGTGTCTCTTGTTTCAAGAGTG 59.475 40.000 27.42 13.06 43.18 3.51
5314 7085 5.084818 TGTGTCTCTTGTTTCAAGAGTGA 57.915 39.130 27.42 17.65 43.18 3.41
5315 7086 5.487433 TGTGTCTCTTGTTTCAAGAGTGAA 58.513 37.500 27.42 16.98 43.18 3.18
5316 7087 6.115446 TGTGTCTCTTGTTTCAAGAGTGAAT 58.885 36.000 27.42 0.00 43.29 2.57
5317 7088 6.599244 TGTGTCTCTTGTTTCAAGAGTGAATT 59.401 34.615 27.42 0.00 43.29 2.17
5318 7089 6.909357 GTGTCTCTTGTTTCAAGAGTGAATTG 59.091 38.462 27.42 10.91 43.29 2.32
5319 7090 5.911838 GTCTCTTGTTTCAAGAGTGAATTGC 59.088 40.000 27.42 13.44 43.29 3.56
5320 7091 5.589855 TCTCTTGTTTCAAGAGTGAATTGCA 59.410 36.000 27.42 11.82 43.29 4.08
5321 7092 5.824429 TCTTGTTTCAAGAGTGAATTGCAG 58.176 37.500 7.92 0.00 43.29 4.41
5322 7093 5.589855 TCTTGTTTCAAGAGTGAATTGCAGA 59.410 36.000 7.92 0.00 43.29 4.26
5323 7094 5.833406 TGTTTCAAGAGTGAATTGCAGAA 57.167 34.783 0.00 0.00 43.29 3.02
5324 7095 6.206395 TGTTTCAAGAGTGAATTGCAGAAA 57.794 33.333 0.00 0.00 43.29 2.52
5325 7096 6.629128 TGTTTCAAGAGTGAATTGCAGAAAA 58.371 32.000 0.00 0.00 43.29 2.29
5327 7098 4.847633 TCAAGAGTGAATTGCAGAAAACG 58.152 39.130 0.00 0.00 0.00 3.60
5329 7100 4.900635 AGAGTGAATTGCAGAAAACGTT 57.099 36.364 0.00 0.00 0.00 3.99
5330 7101 4.601019 AGAGTGAATTGCAGAAAACGTTG 58.399 39.130 0.00 0.00 0.00 4.10
5331 7102 4.335315 AGAGTGAATTGCAGAAAACGTTGA 59.665 37.500 0.00 0.00 0.00 3.18
5332 7103 4.351192 AGTGAATTGCAGAAAACGTTGAC 58.649 39.130 0.00 0.00 0.00 3.18
5333 7104 4.101942 GTGAATTGCAGAAAACGTTGACA 58.898 39.130 0.00 0.00 0.00 3.58
5335 7106 4.975502 TGAATTGCAGAAAACGTTGACATC 59.024 37.500 0.00 0.00 0.00 3.06
5336 7107 2.661504 TGCAGAAAACGTTGACATCG 57.338 45.000 0.00 4.39 0.00 3.84
5337 7108 2.205911 TGCAGAAAACGTTGACATCGA 58.794 42.857 12.66 0.00 0.00 3.59
5340 7111 3.799035 CAGAAAACGTTGACATCGAAGG 58.201 45.455 12.66 0.00 0.00 3.46
5341 7112 2.223377 AGAAAACGTTGACATCGAAGGC 59.777 45.455 12.66 0.00 0.00 4.35
5343 7114 2.736144 AACGTTGACATCGAAGGCTA 57.264 45.000 12.66 0.00 0.00 3.93
5344 7115 2.279582 ACGTTGACATCGAAGGCTAG 57.720 50.000 12.66 0.00 0.00 3.42
5345 7116 1.135083 ACGTTGACATCGAAGGCTAGG 60.135 52.381 12.66 0.00 0.00 3.02
5347 7118 0.901827 TTGACATCGAAGGCTAGGCA 59.098 50.000 19.70 0.00 0.00 4.75
5348 7119 0.461548 TGACATCGAAGGCTAGGCAG 59.538 55.000 19.70 9.43 0.00 4.85
5349 7120 0.461961 GACATCGAAGGCTAGGCAGT 59.538 55.000 19.70 5.57 0.00 4.40
5350 7121 0.176680 ACATCGAAGGCTAGGCAGTG 59.823 55.000 19.70 11.17 0.00 3.66
5351 7122 0.531532 CATCGAAGGCTAGGCAGTGG 60.532 60.000 19.70 7.33 0.00 4.00
5352 7123 2.317149 ATCGAAGGCTAGGCAGTGGC 62.317 60.000 19.70 9.02 40.13 5.01
5353 7124 2.512515 GAAGGCTAGGCAGTGGCG 60.513 66.667 19.70 0.00 42.47 5.69
5354 7125 3.316573 GAAGGCTAGGCAGTGGCGT 62.317 63.158 19.70 2.54 42.47 5.68
5369 7140 2.762459 CGTAGCTAGGGGTGGCCA 60.762 66.667 0.00 0.00 0.00 5.36
5372 7143 1.770110 TAGCTAGGGGTGGCCATGG 60.770 63.158 9.72 7.63 0.00 3.66
5373 7144 2.264494 TAGCTAGGGGTGGCCATGGA 62.264 60.000 18.40 0.00 0.00 3.41
5374 7145 2.919043 CTAGGGGTGGCCATGGAC 59.081 66.667 18.40 15.32 0.00 4.02
5387 7158 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82
5388 7159 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
5390 7161 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
5392 7163 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
5393 7164 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
5394 7165 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
5395 7166 2.424812 CCACCCTGGAATTTCCCCATAG 60.425 54.545 12.90 3.52 40.96 2.23
5396 7167 1.217942 ACCCTGGAATTTCCCCATAGC 59.782 52.381 12.90 0.00 35.03 2.97
5397 7168 1.609208 CCTGGAATTTCCCCATAGCG 58.391 55.000 12.90 0.00 35.03 4.26
5398 7169 1.133792 CCTGGAATTTCCCCATAGCGT 60.134 52.381 12.90 0.00 35.03 5.07
5399 7170 1.949525 CTGGAATTTCCCCATAGCGTG 59.050 52.381 12.90 0.00 35.03 5.34
5400 7171 1.283613 TGGAATTTCCCCATAGCGTGT 59.716 47.619 12.90 0.00 35.03 4.49
5402 7173 3.137544 TGGAATTTCCCCATAGCGTGTAT 59.862 43.478 12.90 0.00 35.03 2.29
5404 7175 5.013704 TGGAATTTCCCCATAGCGTGTATAT 59.986 40.000 12.90 0.00 35.03 0.86
5405 7176 6.213802 TGGAATTTCCCCATAGCGTGTATATA 59.786 38.462 12.90 0.00 35.03 0.86
5406 7177 7.107542 GGAATTTCCCCATAGCGTGTATATAA 58.892 38.462 3.89 0.00 0.00 0.98
5408 7179 8.506168 AATTTCCCCATAGCGTGTATATAATG 57.494 34.615 0.00 0.00 0.00 1.90
5410 7181 7.721409 TTCCCCATAGCGTGTATATAATGTA 57.279 36.000 0.00 0.00 0.00 2.29
5411 7182 7.342769 TCCCCATAGCGTGTATATAATGTAG 57.657 40.000 0.00 0.00 0.00 2.74
5412 7183 6.893554 TCCCCATAGCGTGTATATAATGTAGT 59.106 38.462 0.00 0.00 0.00 2.73
5414 7185 8.689061 CCCCATAGCGTGTATATAATGTAGTAA 58.311 37.037 0.00 0.00 0.00 2.24
5476 7247 8.940397 AATATTTCTATTAATGGACCACCCTG 57.060 34.615 0.00 0.00 35.38 4.45
5477 7248 4.788925 TTCTATTAATGGACCACCCTGG 57.211 45.455 0.00 0.00 45.02 4.45
5478 7249 2.441750 TCTATTAATGGACCACCCTGGC 59.558 50.000 0.00 0.00 42.67 4.85
5479 7250 0.106719 ATTAATGGACCACCCTGGCG 60.107 55.000 0.00 0.00 42.67 5.69
5480 7251 1.493854 TTAATGGACCACCCTGGCGT 61.494 55.000 0.00 0.00 42.67 5.68
5481 7252 0.618107 TAATGGACCACCCTGGCGTA 60.618 55.000 0.00 0.00 42.67 4.42
5482 7253 1.279025 AATGGACCACCCTGGCGTAT 61.279 55.000 0.00 0.00 42.67 3.06
5483 7254 1.279025 ATGGACCACCCTGGCGTATT 61.279 55.000 0.00 0.00 42.67 1.89
5484 7255 1.451387 GGACCACCCTGGCGTATTG 60.451 63.158 0.00 0.00 42.67 1.90
5485 7256 1.451387 GACCACCCTGGCGTATTGG 60.451 63.158 0.00 0.00 42.67 3.16
5486 7257 2.124320 CCACCCTGGCGTATTGGG 60.124 66.667 0.00 0.00 46.07 4.12
5487 7258 2.828549 CACCCTGGCGTATTGGGC 60.829 66.667 0.00 0.00 44.56 5.36
5488 7259 3.015145 ACCCTGGCGTATTGGGCT 61.015 61.111 0.00 0.00 44.56 5.19
5489 7260 2.516930 CCCTGGCGTATTGGGCTG 60.517 66.667 0.00 0.00 33.88 4.85
5490 7261 2.516930 CCTGGCGTATTGGGCTGG 60.517 66.667 0.00 0.00 43.27 4.85
5491 7262 3.211963 CTGGCGTATTGGGCTGGC 61.212 66.667 0.00 0.00 0.00 4.85
5492 7263 3.704231 CTGGCGTATTGGGCTGGCT 62.704 63.158 0.00 0.00 0.00 4.75
5493 7264 2.324014 CTGGCGTATTGGGCTGGCTA 62.324 60.000 0.00 0.00 0.00 3.93
5494 7265 1.892391 GGCGTATTGGGCTGGCTAC 60.892 63.158 0.00 0.00 0.00 3.58
5495 7266 2.244651 GCGTATTGGGCTGGCTACG 61.245 63.158 14.38 14.38 39.81 3.51
5496 7267 2.244651 CGTATTGGGCTGGCTACGC 61.245 63.158 8.20 0.00 31.76 4.42
5514 7285 1.078143 CCACTGAGGCTAGGGTTGC 60.078 63.158 0.00 0.00 0.00 4.17
5515 7286 1.679311 CACTGAGGCTAGGGTTGCA 59.321 57.895 0.00 0.00 0.00 4.08
5516 7287 0.392193 CACTGAGGCTAGGGTTGCAG 60.392 60.000 0.00 0.00 0.00 4.41
5517 7288 0.545309 ACTGAGGCTAGGGTTGCAGA 60.545 55.000 4.36 0.00 0.00 4.26
5518 7289 0.615331 CTGAGGCTAGGGTTGCAGAA 59.385 55.000 0.00 0.00 0.00 3.02
5519 7290 1.003580 CTGAGGCTAGGGTTGCAGAAA 59.996 52.381 0.00 0.00 0.00 2.52
5520 7291 1.271379 TGAGGCTAGGGTTGCAGAAAC 60.271 52.381 0.00 0.00 38.12 2.78
5531 7302 4.210832 GTTGCAGAAACCACACTTCTAC 57.789 45.455 0.00 0.00 31.84 2.59
5532 7303 2.479837 TGCAGAAACCACACTTCTACG 58.520 47.619 0.00 0.00 31.84 3.51
5533 7304 1.798813 GCAGAAACCACACTTCTACGG 59.201 52.381 0.00 0.00 31.84 4.02
5534 7305 2.805657 GCAGAAACCACACTTCTACGGT 60.806 50.000 0.00 0.00 31.84 4.83
5535 7306 3.463944 CAGAAACCACACTTCTACGGTT 58.536 45.455 0.00 0.00 43.55 4.44
5538 7309 4.625972 AAACCACACTTCTACGGTTTTG 57.374 40.909 0.00 0.00 46.92 2.44
5539 7310 3.271055 ACCACACTTCTACGGTTTTGT 57.729 42.857 0.00 0.00 0.00 2.83
5540 7311 2.940410 ACCACACTTCTACGGTTTTGTG 59.060 45.455 0.00 0.00 35.23 3.33
5541 7312 2.286772 CCACACTTCTACGGTTTTGTGC 60.287 50.000 0.00 0.00 34.33 4.57
5542 7313 1.944709 ACACTTCTACGGTTTTGTGCC 59.055 47.619 0.00 0.00 0.00 5.01
5543 7314 1.944024 CACTTCTACGGTTTTGTGCCA 59.056 47.619 0.00 0.00 0.00 4.92
5544 7315 2.356382 CACTTCTACGGTTTTGTGCCAA 59.644 45.455 0.00 0.00 0.00 4.52
5545 7316 3.018149 ACTTCTACGGTTTTGTGCCAAA 58.982 40.909 0.00 0.00 0.00 3.28
5546 7317 3.444388 ACTTCTACGGTTTTGTGCCAAAA 59.556 39.130 8.46 8.46 0.00 2.44
5547 7318 4.082136 ACTTCTACGGTTTTGTGCCAAAAA 60.082 37.500 12.69 2.78 0.00 1.94
5548 7319 3.771798 TCTACGGTTTTGTGCCAAAAAC 58.228 40.909 14.75 14.75 45.29 2.43
5554 7325 4.693538 GTTTTGTGCCAAAAACCACATT 57.306 36.364 12.69 0.00 41.92 2.71
5555 7326 4.657055 GTTTTGTGCCAAAAACCACATTC 58.343 39.130 12.69 0.00 41.92 2.67
5556 7327 3.902881 TTGTGCCAAAAACCACATTCT 57.097 38.095 0.00 0.00 41.16 2.40
5557 7328 5.344743 TTTGTGCCAAAAACCACATTCTA 57.655 34.783 0.00 0.00 41.16 2.10
5558 7329 5.344743 TTGTGCCAAAAACCACATTCTAA 57.655 34.783 0.00 0.00 41.16 2.10
5559 7330 4.942852 TGTGCCAAAAACCACATTCTAAG 58.057 39.130 0.00 0.00 37.07 2.18
5560 7331 4.202202 TGTGCCAAAAACCACATTCTAAGG 60.202 41.667 0.00 0.00 37.07 2.69
5561 7332 3.244044 TGCCAAAAACCACATTCTAAGGC 60.244 43.478 0.00 0.00 38.82 4.35
5562 7333 3.006859 GCCAAAAACCACATTCTAAGGCT 59.993 43.478 0.00 0.00 35.63 4.58
5563 7334 4.219725 GCCAAAAACCACATTCTAAGGCTA 59.780 41.667 0.00 0.00 35.63 3.93
5564 7335 5.279256 GCCAAAAACCACATTCTAAGGCTAA 60.279 40.000 0.00 0.00 35.63 3.09
5565 7336 6.574269 GCCAAAAACCACATTCTAAGGCTAAT 60.574 38.462 0.00 0.00 35.63 1.73
5566 7337 7.386059 CCAAAAACCACATTCTAAGGCTAATT 58.614 34.615 0.00 0.00 0.00 1.40
5567 7338 7.877612 CCAAAAACCACATTCTAAGGCTAATTT 59.122 33.333 0.00 0.00 0.00 1.82
5568 7339 9.271828 CAAAAACCACATTCTAAGGCTAATTTT 57.728 29.630 0.00 0.00 0.00 1.82
5569 7340 9.845740 AAAAACCACATTCTAAGGCTAATTTTT 57.154 25.926 0.00 0.00 0.00 1.94
5570 7341 8.831715 AAACCACATTCTAAGGCTAATTTTTG 57.168 30.769 0.00 0.00 0.00 2.44
5571 7342 6.935167 ACCACATTCTAAGGCTAATTTTTGG 58.065 36.000 0.00 0.00 0.00 3.28
5572 7343 5.812127 CCACATTCTAAGGCTAATTTTTGGC 59.188 40.000 0.00 0.00 36.28 4.52
5573 7344 6.397272 CACATTCTAAGGCTAATTTTTGGCA 58.603 36.000 0.00 0.00 39.12 4.92
5574 7345 6.873076 CACATTCTAAGGCTAATTTTTGGCAA 59.127 34.615 0.00 0.00 39.12 4.52
5575 7346 7.063780 CACATTCTAAGGCTAATTTTTGGCAAG 59.936 37.037 0.00 0.00 39.12 4.01
5576 7347 6.909550 TTCTAAGGCTAATTTTTGGCAAGA 57.090 33.333 0.00 0.00 39.12 3.02
5577 7348 6.909550 TCTAAGGCTAATTTTTGGCAAGAA 57.090 33.333 5.60 5.60 39.12 2.52
5578 7349 6.924111 TCTAAGGCTAATTTTTGGCAAGAAG 58.076 36.000 9.19 0.00 39.12 2.85
5579 7350 3.930336 AGGCTAATTTTTGGCAAGAAGC 58.070 40.909 9.19 6.83 39.12 3.86
5591 7362 1.461127 GCAAGAAGCACTAGTCCAACG 59.539 52.381 0.00 0.00 44.79 4.10
5592 7363 2.069273 CAAGAAGCACTAGTCCAACGG 58.931 52.381 0.00 0.00 0.00 4.44
5593 7364 0.608640 AGAAGCACTAGTCCAACGGG 59.391 55.000 0.00 0.00 0.00 5.28
5594 7365 0.606604 GAAGCACTAGTCCAACGGGA 59.393 55.000 0.00 0.00 42.29 5.14
5614 7385 5.368256 GGAACCATCTGTCATAATCATGC 57.632 43.478 0.00 0.00 31.73 4.06
5615 7386 5.068636 GGAACCATCTGTCATAATCATGCT 58.931 41.667 0.00 0.00 31.73 3.79
5616 7387 5.180868 GGAACCATCTGTCATAATCATGCTC 59.819 44.000 0.00 0.00 31.73 4.26
5617 7388 5.300411 ACCATCTGTCATAATCATGCTCA 57.700 39.130 0.00 0.00 31.73 4.26
5618 7389 5.687780 ACCATCTGTCATAATCATGCTCAA 58.312 37.500 0.00 0.00 31.73 3.02
5619 7390 6.124340 ACCATCTGTCATAATCATGCTCAAA 58.876 36.000 0.00 0.00 31.73 2.69
5620 7391 6.604396 ACCATCTGTCATAATCATGCTCAAAA 59.396 34.615 0.00 0.00 31.73 2.44
5621 7392 7.287005 ACCATCTGTCATAATCATGCTCAAAAT 59.713 33.333 0.00 0.00 31.73 1.82
5622 7393 7.595130 CCATCTGTCATAATCATGCTCAAAATG 59.405 37.037 0.00 0.00 31.73 2.32
5623 7394 7.034685 TCTGTCATAATCATGCTCAAAATGG 57.965 36.000 0.00 0.00 31.73 3.16
5624 7395 6.040054 TCTGTCATAATCATGCTCAAAATGGG 59.960 38.462 0.00 0.00 31.73 4.00
5625 7396 4.986659 GTCATAATCATGCTCAAAATGGGC 59.013 41.667 0.00 0.00 46.11 5.36
5631 7402 3.921257 GCTCAAAATGGGCAAAGCT 57.079 47.368 0.00 0.00 45.01 3.74
5632 7403 1.435577 GCTCAAAATGGGCAAAGCTG 58.564 50.000 0.00 0.00 45.01 4.24
5633 7404 1.270465 GCTCAAAATGGGCAAAGCTGT 60.270 47.619 0.00 0.00 45.01 4.40
5634 7405 2.807837 GCTCAAAATGGGCAAAGCTGTT 60.808 45.455 0.00 0.00 45.01 3.16
5635 7406 2.803956 CTCAAAATGGGCAAAGCTGTTG 59.196 45.455 0.00 0.00 0.00 3.33
5636 7407 2.433604 TCAAAATGGGCAAAGCTGTTGA 59.566 40.909 11.34 0.00 0.00 3.18
5637 7408 2.531522 AAATGGGCAAAGCTGTTGAC 57.468 45.000 11.34 8.77 0.00 3.18
5638 7409 1.708341 AATGGGCAAAGCTGTTGACT 58.292 45.000 12.33 0.00 0.00 3.41
5639 7410 0.963962 ATGGGCAAAGCTGTTGACTG 59.036 50.000 12.33 0.00 0.00 3.51
5640 7411 1.108727 TGGGCAAAGCTGTTGACTGG 61.109 55.000 12.33 0.00 0.00 4.00
5641 7412 1.109323 GGGCAAAGCTGTTGACTGGT 61.109 55.000 12.33 0.00 0.00 4.00
5642 7413 0.031178 GGCAAAGCTGTTGACTGGTG 59.969 55.000 11.34 0.00 0.00 4.17
5643 7414 0.031178 GCAAAGCTGTTGACTGGTGG 59.969 55.000 11.34 0.00 0.00 4.61
5644 7415 1.392589 CAAAGCTGTTGACTGGTGGT 58.607 50.000 0.00 0.00 0.00 4.16
5645 7416 1.750778 CAAAGCTGTTGACTGGTGGTT 59.249 47.619 0.00 0.00 0.00 3.67
5646 7417 2.143876 AAGCTGTTGACTGGTGGTTT 57.856 45.000 0.00 0.00 0.00 3.27
5647 7418 1.680338 AGCTGTTGACTGGTGGTTTC 58.320 50.000 0.00 0.00 0.00 2.78
5648 7419 1.212935 AGCTGTTGACTGGTGGTTTCT 59.787 47.619 0.00 0.00 0.00 2.52
5649 7420 1.334869 GCTGTTGACTGGTGGTTTCTG 59.665 52.381 0.00 0.00 0.00 3.02
5650 7421 1.334869 CTGTTGACTGGTGGTTTCTGC 59.665 52.381 0.00 0.00 0.00 4.26
5651 7422 1.340502 TGTTGACTGGTGGTTTCTGCA 60.341 47.619 0.00 0.00 0.00 4.41
5652 7423 1.748493 GTTGACTGGTGGTTTCTGCAA 59.252 47.619 0.00 0.00 0.00 4.08
5653 7424 2.136298 TGACTGGTGGTTTCTGCAAA 57.864 45.000 0.00 0.00 0.00 3.68
5654 7425 2.451490 TGACTGGTGGTTTCTGCAAAA 58.549 42.857 0.00 0.00 0.00 2.44
5655 7426 2.828520 TGACTGGTGGTTTCTGCAAAAA 59.171 40.909 0.00 0.00 0.00 1.94
5675 7446 3.942130 AATTAGGCTCAGCACAAAACC 57.058 42.857 0.00 0.00 0.00 3.27
5676 7447 1.234821 TTAGGCTCAGCACAAAACCG 58.765 50.000 0.00 0.00 0.00 4.44
5677 7448 0.107831 TAGGCTCAGCACAAAACCGT 59.892 50.000 0.00 0.00 0.00 4.83
5678 7449 0.107831 AGGCTCAGCACAAAACCGTA 59.892 50.000 0.00 0.00 0.00 4.02
5679 7450 0.517316 GGCTCAGCACAAAACCGTAG 59.483 55.000 0.00 0.00 0.00 3.51
5680 7451 1.508632 GCTCAGCACAAAACCGTAGA 58.491 50.000 0.00 0.00 0.00 2.59
5681 7452 1.871039 GCTCAGCACAAAACCGTAGAA 59.129 47.619 0.00 0.00 0.00 2.10
5682 7453 2.096218 GCTCAGCACAAAACCGTAGAAG 60.096 50.000 0.00 0.00 0.00 2.85
5683 7454 3.131396 CTCAGCACAAAACCGTAGAAGT 58.869 45.455 0.00 0.00 0.00 3.01
5684 7455 3.128349 TCAGCACAAAACCGTAGAAGTC 58.872 45.455 0.00 0.00 0.00 3.01
5685 7456 3.131396 CAGCACAAAACCGTAGAAGTCT 58.869 45.455 0.00 0.00 0.00 3.24
5686 7457 3.560068 CAGCACAAAACCGTAGAAGTCTT 59.440 43.478 0.00 0.00 0.00 3.01
5687 7458 3.808174 AGCACAAAACCGTAGAAGTCTTC 59.192 43.478 4.26 4.26 0.00 2.87
5688 7459 3.558418 GCACAAAACCGTAGAAGTCTTCA 59.442 43.478 14.97 0.00 0.00 3.02
5689 7460 4.034742 GCACAAAACCGTAGAAGTCTTCAA 59.965 41.667 14.97 0.00 0.00 2.69
5690 7461 5.277828 GCACAAAACCGTAGAAGTCTTCAAT 60.278 40.000 14.97 0.00 0.00 2.57
5691 7462 6.136071 CACAAAACCGTAGAAGTCTTCAATG 58.864 40.000 14.97 3.58 0.00 2.82
5692 7463 5.820947 ACAAAACCGTAGAAGTCTTCAATGT 59.179 36.000 14.97 3.74 0.00 2.71
5693 7464 6.018180 ACAAAACCGTAGAAGTCTTCAATGTC 60.018 38.462 14.97 0.17 0.00 3.06
5694 7465 4.866508 ACCGTAGAAGTCTTCAATGTCA 57.133 40.909 14.97 0.00 0.00 3.58
5695 7466 5.407407 ACCGTAGAAGTCTTCAATGTCAT 57.593 39.130 14.97 0.00 0.00 3.06
5696 7467 5.794894 ACCGTAGAAGTCTTCAATGTCATT 58.205 37.500 14.97 0.00 0.00 2.57
5697 7468 5.639506 ACCGTAGAAGTCTTCAATGTCATTG 59.360 40.000 17.95 17.95 41.57 2.82
5698 7469 5.639506 CCGTAGAAGTCTTCAATGTCATTGT 59.360 40.000 22.01 4.84 41.02 2.71
5699 7470 6.811665 CCGTAGAAGTCTTCAATGTCATTGTA 59.188 38.462 22.01 13.71 41.02 2.41
5826 8156 0.331616 ACTCCTTAACATGTGGGGCC 59.668 55.000 0.00 0.00 0.00 5.80
5852 8182 4.811969 ATGCAAAATCTTCCTTGATGCA 57.188 36.364 0.00 0.00 30.96 3.96
5856 8186 4.491676 CAAAATCTTCCTTGATGCACCAG 58.508 43.478 0.00 0.00 0.00 4.00
5869 8199 1.372087 GCACCAGAAGGCTCCATTCG 61.372 60.000 0.00 0.00 39.06 3.34
5895 8225 5.414144 GGGGAGAACTTGAGAGATTTTGAAG 59.586 44.000 0.00 0.00 0.00 3.02
5942 8273 2.294233 CACAGAACATGGGGAGTTTGTG 59.706 50.000 0.00 0.00 34.75 3.33
5945 8276 2.958355 AGAACATGGGGAGTTTGTGTTG 59.042 45.455 0.00 0.00 33.55 3.33
5966 8297 7.597743 GTGTTGATTTGAGCAATTGATTCTTCT 59.402 33.333 10.34 0.00 0.00 2.85
5967 8298 8.145767 TGTTGATTTGAGCAATTGATTCTTCTT 58.854 29.630 10.34 0.00 0.00 2.52
5968 8299 8.433126 GTTGATTTGAGCAATTGATTCTTCTTG 58.567 33.333 10.34 0.00 0.00 3.02
6012 8346 2.230660 CTCCCGCTCTTTTCAAAACCT 58.769 47.619 0.00 0.00 0.00 3.50
6013 8347 2.226674 CTCCCGCTCTTTTCAAAACCTC 59.773 50.000 0.00 0.00 0.00 3.85
6060 8396 3.466836 ACGTGACATCACATGTGAAGTT 58.533 40.909 30.91 19.31 46.75 2.66
6093 8431 4.994852 ACGTGTCTTGTATAACTGCACAAT 59.005 37.500 0.00 0.00 34.34 2.71
6124 8462 1.302033 ACCGTGCTGCTTTCAGAGG 60.302 57.895 0.00 0.00 42.95 3.69
6126 8464 2.866028 GTGCTGCTTTCAGAGGCG 59.134 61.111 0.00 0.00 42.95 5.52
6129 8467 2.394563 GCTGCTTTCAGAGGCGACC 61.395 63.158 0.00 0.00 42.95 4.79
6197 8535 5.310331 ACCCTTCCAATTCAATCCAACATTT 59.690 36.000 0.00 0.00 0.00 2.32
6219 8557 9.893305 CATTTTAGGTTTCGAAGTAGATTTTGT 57.107 29.630 0.00 0.00 0.00 2.83
6220 8558 9.893305 ATTTTAGGTTTCGAAGTAGATTTTGTG 57.107 29.630 0.00 0.00 0.00 3.33
6226 8564 7.806014 GGTTTCGAAGTAGATTTTGTGCAATAA 59.194 33.333 0.00 0.00 0.00 1.40
6227 8565 8.627428 GTTTCGAAGTAGATTTTGTGCAATAAC 58.373 33.333 0.00 0.00 0.00 1.89
6228 8566 7.667043 TCGAAGTAGATTTTGTGCAATAACT 57.333 32.000 0.00 0.00 0.00 2.24
6235 8608 4.513198 TTTTGTGCAATAACTAGTGGCC 57.487 40.909 0.00 0.00 0.00 5.36
6241 8614 2.680805 GCAATAACTAGTGGCCAGAGCA 60.681 50.000 5.11 0.00 42.56 4.26
6244 8617 0.764890 AACTAGTGGCCAGAGCACAA 59.235 50.000 5.11 0.00 42.56 3.33
6258 8631 3.616721 ACAACGGCGCCTCTCAGT 61.617 61.111 26.68 11.95 0.00 3.41
6259 8632 2.811317 CAACGGCGCCTCTCAGTC 60.811 66.667 26.68 0.00 0.00 3.51
6279 8652 1.004679 GCACGGGTCCGAACCTTAA 60.005 57.895 16.90 0.00 45.66 1.85
6323 8696 9.727627 CTGTCTCTCTTAATTAAAAATGCCATC 57.272 33.333 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 277 2.126888 CGGAAACCATGTGTGCGC 60.127 61.111 0.00 0.00 26.53 6.09
239 294 5.530519 TGCATAGAGTCGAATTGAACAAC 57.469 39.130 0.00 0.00 0.00 3.32
369 424 4.090354 GCGTTGTTAGTACGTATGCTTGAA 59.910 41.667 0.00 0.00 40.92 2.69
419 474 0.447011 GTGATTCACTGCTGCTGCTC 59.553 55.000 17.00 5.31 40.48 4.26
433 488 3.052036 GTGCATTTCGCTTGTTGTGATT 58.948 40.909 0.00 0.00 43.06 2.57
435 490 1.403323 TGTGCATTTCGCTTGTTGTGA 59.597 42.857 0.00 0.00 43.06 3.58
465 521 5.163248 TGTGCGATTCTCTATTATTTGGGGA 60.163 40.000 0.00 0.00 0.00 4.81
499 561 4.101119 CCCATCTCCTATTCCGTTACACTT 59.899 45.833 0.00 0.00 0.00 3.16
512 574 0.997307 TCCTCCCGTCCCATCTCCTA 60.997 60.000 0.00 0.00 0.00 2.94
1104 1192 3.423206 GCAGAGAGAAATGCGTTTTTGTG 59.577 43.478 5.17 5.09 31.87 3.33
1124 1212 3.479203 CCACCGGGATGGCTAGCA 61.479 66.667 18.24 2.97 43.94 3.49
1125 1213 3.161450 TCCACCGGGATGGCTAGC 61.161 66.667 6.04 6.04 43.94 3.42
1137 1225 1.172812 GGAATAAGCGGGCATCCACC 61.173 60.000 0.00 0.00 0.00 4.61
1138 1226 1.172812 GGGAATAAGCGGGCATCCAC 61.173 60.000 0.00 0.00 31.63 4.02
1139 1227 1.150536 GGGAATAAGCGGGCATCCA 59.849 57.895 0.00 0.00 31.63 3.41
1181 1277 2.665603 GGAGCGGACAGGAGCTTT 59.334 61.111 0.00 0.00 44.69 3.51
1264 1365 1.273324 GGAGGTGGAAGAGGAGGAAGA 60.273 57.143 0.00 0.00 0.00 2.87
1265 1366 1.199615 GGAGGTGGAAGAGGAGGAAG 58.800 60.000 0.00 0.00 0.00 3.46
1266 1367 0.252742 GGGAGGTGGAAGAGGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
1355 1471 0.532573 CGAGTAGCTGAAAGGAGGCA 59.467 55.000 0.00 0.00 0.00 4.75
1360 1484 2.724977 TGTGACGAGTAGCTGAAAGG 57.275 50.000 0.00 0.00 0.00 3.11
1386 1510 0.252239 TAGGAGGAGGCTGTGCTCAA 60.252 55.000 0.00 0.00 45.40 3.02
1606 1781 3.619233 ACCAACGTAACAGTTCAATGC 57.381 42.857 0.00 0.00 30.96 3.56
1697 1874 9.260002 GAAAAGAATTGAGCATGAAAGGTTTTA 57.740 29.630 0.00 0.00 0.00 1.52
1800 2056 7.962918 GCGTGTGAAATCTGAAATAACATAAGT 59.037 33.333 0.00 0.00 0.00 2.24
1851 2115 3.517901 AGTCGGACACCATCAAAATCCTA 59.482 43.478 11.27 0.00 0.00 2.94
2027 2295 5.371526 AGAGTGGACGAATGAAATGCATAT 58.628 37.500 0.00 0.00 35.78 1.78
2098 2366 3.721706 ACTGTAGCAGGGCTGGGC 61.722 66.667 0.07 0.00 40.10 5.36
2108 2376 1.207593 CGCCTTTGTGCACTGTAGC 59.792 57.895 19.41 14.46 0.00 3.58
2152 2420 0.036577 GAGTGATGAGCAGTGGCAGT 60.037 55.000 0.00 0.00 44.61 4.40
2154 2422 0.036671 CAGAGTGATGAGCAGTGGCA 60.037 55.000 0.00 0.00 44.61 4.92
2212 2480 5.523916 CCTCAAACAGAAACTCGGTATATGG 59.476 44.000 0.00 0.00 0.00 2.74
2220 2488 5.119279 CAGTACATCCTCAAACAGAAACTCG 59.881 44.000 0.00 0.00 0.00 4.18
2287 2555 6.727824 AGTAGCATAAGTTACTTTGCACAG 57.272 37.500 23.30 0.00 38.44 3.66
2552 2822 2.020720 TCGTGGCACAGTGTTGAAAAT 58.979 42.857 19.09 0.00 41.80 1.82
2843 3113 9.832445 ACCAATCTACTTATCACAACGATAATT 57.168 29.630 0.00 0.00 43.94 1.40
2849 3119 9.062674 CGATATACCAATCTACTTATCACAACG 57.937 37.037 0.00 0.00 0.00 4.10
2994 3264 7.309499 CCCACCTTTAACATACATGCAGTTAAA 60.309 37.037 20.26 20.26 42.25 1.52
3020 3293 3.991605 ATGCTGAATTACGAACGTGTC 57.008 42.857 10.14 5.55 0.00 3.67
3024 3297 4.684242 TGCCTATATGCTGAATTACGAACG 59.316 41.667 1.58 0.00 0.00 3.95
3045 3318 5.611796 TGACAGTGATGAAAACAGTATGC 57.388 39.130 0.00 0.00 42.53 3.14
3106 3379 7.472334 ACCAAAACATTCTATCAAGCTGAAT 57.528 32.000 0.00 0.00 0.00 2.57
3411 3759 8.450964 ACCAACAATCTAGATATTTTGAACACG 58.549 33.333 5.46 0.53 0.00 4.49
3570 3924 6.868339 GGGTTTTTAGAATTCAATGGACAGTG 59.132 38.462 8.44 0.00 0.00 3.66
3621 4021 7.230510 TGACAATTTTGGCTACTCTGTTAATGT 59.769 33.333 0.00 0.00 37.03 2.71
3659 4066 4.142609 AGGAGAGCGCTAATCATTTCAA 57.857 40.909 11.50 0.00 0.00 2.69
3660 4067 3.827008 AGGAGAGCGCTAATCATTTCA 57.173 42.857 11.50 0.00 0.00 2.69
3661 4068 4.122776 TCAAGGAGAGCGCTAATCATTTC 58.877 43.478 11.50 0.00 0.00 2.17
3662 4069 4.142609 TCAAGGAGAGCGCTAATCATTT 57.857 40.909 11.50 7.52 0.00 2.32
3663 4070 3.827008 TCAAGGAGAGCGCTAATCATT 57.173 42.857 11.50 13.28 0.00 2.57
3664 4071 3.118629 TGTTCAAGGAGAGCGCTAATCAT 60.119 43.478 11.50 6.68 0.00 2.45
3665 4072 2.233676 TGTTCAAGGAGAGCGCTAATCA 59.766 45.455 11.50 0.00 0.00 2.57
3746 4172 1.265365 GAAGAACCAGAAGCACACAGC 59.735 52.381 0.00 0.00 46.19 4.40
3873 4299 7.694388 AATAAAAACGAAACCAAAAGCTCTC 57.306 32.000 0.00 0.00 0.00 3.20
3960 4394 8.458843 GTTATAGTTAATTGCACTCCACACAAT 58.541 33.333 0.00 0.00 35.59 2.71
3966 4400 9.899661 AGTATTGTTATAGTTAATTGCACTCCA 57.100 29.630 0.00 0.00 0.00 3.86
3985 4419 6.428159 GGTCAAGTTTCATGTCTCAGTATTGT 59.572 38.462 0.00 0.00 0.00 2.71
4185 4621 7.060421 AGAACCTGAAAAGGAGTAATTTGTCA 58.940 34.615 0.00 0.00 0.00 3.58
4438 5980 4.437239 CACATCATCCCAACTGTAGAGTC 58.563 47.826 0.00 0.00 0.00 3.36
4626 6177 6.824958 ACAATATATGTAAGGACAGGTGGT 57.175 37.500 0.00 0.00 41.63 4.16
4724 6461 0.530211 TGCATGCAAAACTGTGGTGC 60.530 50.000 20.30 8.57 38.78 5.01
4748 6490 3.194861 CAACGTCAGTGACTTCCTTTCA 58.805 45.455 20.64 0.00 0.00 2.69
4749 6491 3.001330 CACAACGTCAGTGACTTCCTTTC 59.999 47.826 20.64 0.00 39.30 2.62
4782 6524 5.453903 GCTCCACATGTGAGGTATCTACAAT 60.454 44.000 27.46 0.00 0.00 2.71
5083 6826 6.323266 CCTAAAATAGATATCACGACCTCCG 58.677 44.000 5.32 0.00 45.44 4.63
5128 6878 1.476291 GGACCAGGAAACACCGAAAGT 60.476 52.381 0.00 0.00 44.74 2.66
5151 6901 6.640518 AGACTTGTTCTCAAAACAGTCACTA 58.359 36.000 15.87 0.00 34.15 2.74
5153 6903 5.803020 AGACTTGTTCTCAAAACAGTCAC 57.197 39.130 15.87 2.97 34.15 3.67
5235 7006 7.039784 ACTCACACCATTAACTTTATGCAACAT 60.040 33.333 0.00 0.00 0.00 2.71
5266 7037 3.900941 ACGAAAAGTTGGCAATGACATC 58.099 40.909 1.92 0.00 0.00 3.06
5305 7076 4.335315 ACGTTTTCTGCAATTCACTCTTGA 59.665 37.500 0.00 0.00 0.00 3.02
5309 7080 4.437820 GTCAACGTTTTCTGCAATTCACTC 59.562 41.667 0.00 0.00 0.00 3.51
5310 7081 4.142491 TGTCAACGTTTTCTGCAATTCACT 60.142 37.500 0.00 0.00 0.00 3.41
5313 7084 4.087085 CGATGTCAACGTTTTCTGCAATTC 59.913 41.667 0.00 0.00 0.00 2.17
5314 7085 3.974401 CGATGTCAACGTTTTCTGCAATT 59.026 39.130 0.00 0.00 0.00 2.32
5315 7086 3.249799 TCGATGTCAACGTTTTCTGCAAT 59.750 39.130 0.00 0.00 0.00 3.56
5316 7087 2.609916 TCGATGTCAACGTTTTCTGCAA 59.390 40.909 0.00 0.00 0.00 4.08
5317 7088 2.205911 TCGATGTCAACGTTTTCTGCA 58.794 42.857 0.00 0.00 0.00 4.41
5318 7089 2.941891 TCGATGTCAACGTTTTCTGC 57.058 45.000 0.00 0.00 0.00 4.26
5319 7090 3.799035 CCTTCGATGTCAACGTTTTCTG 58.201 45.455 0.00 0.00 0.00 3.02
5320 7091 2.223377 GCCTTCGATGTCAACGTTTTCT 59.777 45.455 0.00 0.00 0.00 2.52
5321 7092 2.223377 AGCCTTCGATGTCAACGTTTTC 59.777 45.455 0.00 0.00 0.00 2.29
5322 7093 2.218603 AGCCTTCGATGTCAACGTTTT 58.781 42.857 0.00 0.00 0.00 2.43
5323 7094 1.878953 AGCCTTCGATGTCAACGTTT 58.121 45.000 0.00 0.00 0.00 3.60
5324 7095 2.607187 CTAGCCTTCGATGTCAACGTT 58.393 47.619 0.00 0.00 0.00 3.99
5325 7096 1.135083 CCTAGCCTTCGATGTCAACGT 60.135 52.381 2.23 0.00 0.00 3.99
5327 7098 1.291132 GCCTAGCCTTCGATGTCAAC 58.709 55.000 0.00 0.00 0.00 3.18
5329 7100 0.461548 CTGCCTAGCCTTCGATGTCA 59.538 55.000 0.00 0.00 0.00 3.58
5330 7101 0.461961 ACTGCCTAGCCTTCGATGTC 59.538 55.000 0.00 0.00 0.00 3.06
5331 7102 0.176680 CACTGCCTAGCCTTCGATGT 59.823 55.000 0.00 0.00 0.00 3.06
5332 7103 0.531532 CCACTGCCTAGCCTTCGATG 60.532 60.000 0.00 0.00 0.00 3.84
5333 7104 1.826024 CCACTGCCTAGCCTTCGAT 59.174 57.895 0.00 0.00 0.00 3.59
5335 7106 2.512515 GCCACTGCCTAGCCTTCG 60.513 66.667 0.00 0.00 0.00 3.79
5336 7107 1.956629 TACGCCACTGCCTAGCCTTC 61.957 60.000 0.00 0.00 0.00 3.46
5337 7108 1.961180 CTACGCCACTGCCTAGCCTT 61.961 60.000 0.00 0.00 0.00 4.35
5340 7111 1.735376 TAGCTACGCCACTGCCTAGC 61.735 60.000 7.26 7.26 46.29 3.42
5341 7112 0.312416 CTAGCTACGCCACTGCCTAG 59.688 60.000 0.00 0.00 31.58 3.02
5343 7114 2.427245 CCTAGCTACGCCACTGCCT 61.427 63.158 0.00 0.00 0.00 4.75
5344 7115 2.107141 CCTAGCTACGCCACTGCC 59.893 66.667 0.00 0.00 0.00 4.85
5345 7116 2.107141 CCCTAGCTACGCCACTGC 59.893 66.667 0.00 0.00 0.00 4.40
5347 7118 2.058595 CACCCCTAGCTACGCCACT 61.059 63.158 0.00 0.00 0.00 4.00
5348 7119 2.499685 CACCCCTAGCTACGCCAC 59.500 66.667 0.00 0.00 0.00 5.01
5349 7120 2.762459 CCACCCCTAGCTACGCCA 60.762 66.667 0.00 0.00 0.00 5.69
5350 7121 4.237207 GCCACCCCTAGCTACGCC 62.237 72.222 0.00 0.00 0.00 5.68
5351 7122 4.237207 GGCCACCCCTAGCTACGC 62.237 72.222 0.00 0.00 0.00 4.42
5352 7123 2.140792 ATGGCCACCCCTAGCTACG 61.141 63.158 8.16 0.00 0.00 3.51
5353 7124 1.451936 CATGGCCACCCCTAGCTAC 59.548 63.158 8.16 0.00 0.00 3.58
5354 7125 1.770110 CCATGGCCACCCCTAGCTA 60.770 63.158 8.16 0.00 0.00 3.32
5356 7127 3.096495 TCCATGGCCACCCCTAGC 61.096 66.667 8.16 0.00 0.00 3.42
5357 7128 2.757124 GGTCCATGGCCACCCCTAG 61.757 68.421 8.16 0.00 0.00 3.02
5368 7139 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
5369 7140 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
5372 7143 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
5373 7144 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
5374 7145 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
5378 7149 1.133792 ACGCTATGGGGAAATTCCAGG 60.134 52.381 14.68 0.12 38.64 4.45
5379 7150 1.949525 CACGCTATGGGGAAATTCCAG 59.050 52.381 14.68 3.58 38.64 3.86
5382 7153 8.612619 CATTATATACACGCTATGGGGAAATTC 58.387 37.037 0.00 0.00 0.00 2.17
5383 7154 8.107095 ACATTATATACACGCTATGGGGAAATT 58.893 33.333 0.00 0.00 0.00 1.82
5384 7155 7.630082 ACATTATATACACGCTATGGGGAAAT 58.370 34.615 0.00 0.00 0.00 2.17
5386 7157 6.614694 ACATTATATACACGCTATGGGGAA 57.385 37.500 0.00 0.00 0.00 3.97
5387 7158 6.893554 ACTACATTATATACACGCTATGGGGA 59.106 38.462 0.00 0.00 0.00 4.81
5388 7159 7.108841 ACTACATTATATACACGCTATGGGG 57.891 40.000 0.00 0.00 0.00 4.96
5452 7223 7.470192 CCAGGGTGGTCCATTAATAGAAATAT 58.530 38.462 0.00 0.00 38.24 1.28
5453 7224 6.693045 GCCAGGGTGGTCCATTAATAGAAATA 60.693 42.308 0.00 0.00 40.46 1.40
5454 7225 5.705400 CCAGGGTGGTCCATTAATAGAAAT 58.295 41.667 0.00 0.00 38.24 2.17
5456 7227 3.117663 GCCAGGGTGGTCCATTAATAGAA 60.118 47.826 0.00 0.00 40.46 2.10
5458 7229 2.810400 CGCCAGGGTGGTCCATTAATAG 60.810 54.545 0.00 0.00 40.46 1.73
5459 7230 1.142060 CGCCAGGGTGGTCCATTAATA 59.858 52.381 0.00 0.00 40.46 0.98
5460 7231 0.106719 CGCCAGGGTGGTCCATTAAT 60.107 55.000 0.00 0.00 40.46 1.40
5461 7232 1.301623 CGCCAGGGTGGTCCATTAA 59.698 57.895 0.00 0.00 40.46 1.40
5462 7233 0.618107 TACGCCAGGGTGGTCCATTA 60.618 55.000 3.63 0.00 40.46 1.90
5463 7234 1.279025 ATACGCCAGGGTGGTCCATT 61.279 55.000 3.63 0.00 40.46 3.16
5464 7235 1.279025 AATACGCCAGGGTGGTCCAT 61.279 55.000 3.63 0.00 40.46 3.41
5465 7236 1.921346 AATACGCCAGGGTGGTCCA 60.921 57.895 3.63 0.00 40.46 4.02
5466 7237 1.451387 CAATACGCCAGGGTGGTCC 60.451 63.158 3.63 0.00 40.46 4.46
5467 7238 1.451387 CCAATACGCCAGGGTGGTC 60.451 63.158 3.63 0.00 40.46 4.02
5468 7239 2.674754 CCAATACGCCAGGGTGGT 59.325 61.111 3.63 0.00 40.46 4.16
5469 7240 2.124320 CCCAATACGCCAGGGTGG 60.124 66.667 3.63 0.00 41.55 4.61
5470 7241 2.828549 GCCCAATACGCCAGGGTG 60.829 66.667 0.00 0.00 44.69 4.61
5471 7242 3.015145 AGCCCAATACGCCAGGGT 61.015 61.111 0.00 0.00 44.69 4.34
5472 7243 2.516930 CAGCCCAATACGCCAGGG 60.517 66.667 0.00 0.00 45.68 4.45
5473 7244 2.516930 CCAGCCCAATACGCCAGG 60.517 66.667 0.00 0.00 0.00 4.45
5474 7245 2.324014 TAGCCAGCCCAATACGCCAG 62.324 60.000 0.00 0.00 0.00 4.85
5475 7246 2.371259 TAGCCAGCCCAATACGCCA 61.371 57.895 0.00 0.00 0.00 5.69
5476 7247 1.892391 GTAGCCAGCCCAATACGCC 60.892 63.158 0.00 0.00 0.00 5.68
5477 7248 2.244651 CGTAGCCAGCCCAATACGC 61.245 63.158 0.00 0.00 35.19 4.42
5478 7249 4.027755 CGTAGCCAGCCCAATACG 57.972 61.111 0.00 0.00 35.58 3.06
5496 7267 1.078143 GCAACCCTAGCCTCAGTGG 60.078 63.158 0.00 0.00 39.35 4.00
5497 7268 0.392193 CTGCAACCCTAGCCTCAGTG 60.392 60.000 0.00 0.00 0.00 3.66
5498 7269 0.545309 TCTGCAACCCTAGCCTCAGT 60.545 55.000 0.00 0.00 0.00 3.41
5499 7270 0.615331 TTCTGCAACCCTAGCCTCAG 59.385 55.000 0.00 0.00 0.00 3.35
5500 7271 1.064003 TTTCTGCAACCCTAGCCTCA 58.936 50.000 0.00 0.00 0.00 3.86
5501 7272 1.454201 GTTTCTGCAACCCTAGCCTC 58.546 55.000 0.00 0.00 0.00 4.70
5502 7273 3.652581 GTTTCTGCAACCCTAGCCT 57.347 52.632 0.00 0.00 0.00 4.58
5510 7281 3.303132 CGTAGAAGTGTGGTTTCTGCAAC 60.303 47.826 0.00 0.00 37.19 4.17
5511 7282 2.869801 CGTAGAAGTGTGGTTTCTGCAA 59.130 45.455 0.00 0.00 37.19 4.08
5512 7283 2.479837 CGTAGAAGTGTGGTTTCTGCA 58.520 47.619 4.46 0.00 37.19 4.41
5513 7284 1.798813 CCGTAGAAGTGTGGTTTCTGC 59.201 52.381 0.00 0.00 36.38 4.26
5514 7285 3.107642 ACCGTAGAAGTGTGGTTTCTG 57.892 47.619 0.00 0.00 36.38 3.02
5515 7286 3.832615 AACCGTAGAAGTGTGGTTTCT 57.167 42.857 0.00 0.00 41.80 2.52
5518 7289 3.375922 CACAAAACCGTAGAAGTGTGGTT 59.624 43.478 0.00 0.00 46.26 3.67
5519 7290 2.940410 CACAAAACCGTAGAAGTGTGGT 59.060 45.455 0.00 0.00 34.19 4.16
5520 7291 2.286772 GCACAAAACCGTAGAAGTGTGG 60.287 50.000 0.00 0.00 37.44 4.17
5521 7292 2.286772 GGCACAAAACCGTAGAAGTGTG 60.287 50.000 0.00 0.00 39.44 3.82
5522 7293 1.944709 GGCACAAAACCGTAGAAGTGT 59.055 47.619 0.00 0.00 0.00 3.55
5523 7294 1.944024 TGGCACAAAACCGTAGAAGTG 59.056 47.619 0.00 0.00 31.92 3.16
5524 7295 2.335316 TGGCACAAAACCGTAGAAGT 57.665 45.000 0.00 0.00 31.92 3.01
5537 7308 4.202202 CCTTAGAATGTGGTTTTTGGCACA 60.202 41.667 0.00 0.00 0.00 4.57
5538 7309 4.306600 CCTTAGAATGTGGTTTTTGGCAC 58.693 43.478 0.00 0.00 0.00 5.01
5539 7310 3.244044 GCCTTAGAATGTGGTTTTTGGCA 60.244 43.478 0.00 0.00 36.91 4.92
5540 7311 3.006859 AGCCTTAGAATGTGGTTTTTGGC 59.993 43.478 0.00 0.00 37.15 4.52
5541 7312 4.871933 AGCCTTAGAATGTGGTTTTTGG 57.128 40.909 0.00 0.00 0.00 3.28
5542 7313 8.831715 AAATTAGCCTTAGAATGTGGTTTTTG 57.168 30.769 0.00 0.00 0.00 2.44
5543 7314 9.845740 AAAAATTAGCCTTAGAATGTGGTTTTT 57.154 25.926 0.00 0.00 0.00 1.94
5544 7315 9.271828 CAAAAATTAGCCTTAGAATGTGGTTTT 57.728 29.630 0.00 0.00 0.00 2.43
5545 7316 7.877612 CCAAAAATTAGCCTTAGAATGTGGTTT 59.122 33.333 0.00 0.00 0.00 3.27
5546 7317 7.386059 CCAAAAATTAGCCTTAGAATGTGGTT 58.614 34.615 0.00 0.00 0.00 3.67
5547 7318 6.574269 GCCAAAAATTAGCCTTAGAATGTGGT 60.574 38.462 0.00 0.00 0.00 4.16
5548 7319 5.812127 GCCAAAAATTAGCCTTAGAATGTGG 59.188 40.000 0.00 0.00 0.00 4.17
5549 7320 6.397272 TGCCAAAAATTAGCCTTAGAATGTG 58.603 36.000 0.00 0.00 0.00 3.21
5550 7321 6.603940 TGCCAAAAATTAGCCTTAGAATGT 57.396 33.333 0.00 0.00 0.00 2.71
5551 7322 7.322664 TCTTGCCAAAAATTAGCCTTAGAATG 58.677 34.615 0.00 0.00 0.00 2.67
5552 7323 7.480760 TCTTGCCAAAAATTAGCCTTAGAAT 57.519 32.000 0.00 0.00 0.00 2.40
5553 7324 6.909550 TCTTGCCAAAAATTAGCCTTAGAA 57.090 33.333 0.00 0.00 0.00 2.10
5554 7325 6.572314 GCTTCTTGCCAAAAATTAGCCTTAGA 60.572 38.462 0.00 0.00 35.15 2.10
5555 7326 5.578336 GCTTCTTGCCAAAAATTAGCCTTAG 59.422 40.000 0.00 0.00 35.15 2.18
5556 7327 5.011533 TGCTTCTTGCCAAAAATTAGCCTTA 59.988 36.000 0.00 0.00 42.00 2.69
5557 7328 4.202346 TGCTTCTTGCCAAAAATTAGCCTT 60.202 37.500 0.00 0.00 42.00 4.35
5558 7329 3.324556 TGCTTCTTGCCAAAAATTAGCCT 59.675 39.130 0.00 0.00 42.00 4.58
5559 7330 3.433274 GTGCTTCTTGCCAAAAATTAGCC 59.567 43.478 0.00 0.00 42.00 3.93
5560 7331 4.309933 AGTGCTTCTTGCCAAAAATTAGC 58.690 39.130 0.00 0.00 42.00 3.09
5561 7332 6.681777 ACTAGTGCTTCTTGCCAAAAATTAG 58.318 36.000 0.00 0.00 42.00 1.73
5562 7333 6.294508 GGACTAGTGCTTCTTGCCAAAAATTA 60.295 38.462 7.20 0.00 42.00 1.40
5563 7334 5.509670 GGACTAGTGCTTCTTGCCAAAAATT 60.510 40.000 7.20 0.00 42.00 1.82
5564 7335 4.021981 GGACTAGTGCTTCTTGCCAAAAAT 60.022 41.667 7.20 0.00 42.00 1.82
5565 7336 3.317993 GGACTAGTGCTTCTTGCCAAAAA 59.682 43.478 7.20 0.00 42.00 1.94
5566 7337 2.884639 GGACTAGTGCTTCTTGCCAAAA 59.115 45.455 7.20 0.00 42.00 2.44
5567 7338 2.158682 TGGACTAGTGCTTCTTGCCAAA 60.159 45.455 15.92 0.00 42.00 3.28
5568 7339 1.419762 TGGACTAGTGCTTCTTGCCAA 59.580 47.619 15.92 0.00 42.00 4.52
5569 7340 1.055849 TGGACTAGTGCTTCTTGCCA 58.944 50.000 15.92 3.79 42.00 4.92
5570 7341 1.807142 GTTGGACTAGTGCTTCTTGCC 59.193 52.381 15.92 0.98 42.00 4.52
5571 7342 1.461127 CGTTGGACTAGTGCTTCTTGC 59.539 52.381 15.92 0.00 43.25 4.01
5572 7343 2.069273 CCGTTGGACTAGTGCTTCTTG 58.931 52.381 15.92 1.44 0.00 3.02
5573 7344 1.002087 CCCGTTGGACTAGTGCTTCTT 59.998 52.381 15.92 0.00 0.00 2.52
5574 7345 0.608640 CCCGTTGGACTAGTGCTTCT 59.391 55.000 15.92 0.00 0.00 2.85
5575 7346 0.606604 TCCCGTTGGACTAGTGCTTC 59.393 55.000 15.92 7.50 35.03 3.86
5576 7347 1.053424 TTCCCGTTGGACTAGTGCTT 58.947 50.000 15.92 0.00 41.57 3.91
5577 7348 0.320697 GTTCCCGTTGGACTAGTGCT 59.679 55.000 15.92 0.00 41.57 4.40
5578 7349 0.672711 GGTTCCCGTTGGACTAGTGC 60.673 60.000 7.56 7.56 41.57 4.40
5579 7350 0.682852 TGGTTCCCGTTGGACTAGTG 59.317 55.000 0.00 0.00 41.57 2.74
5580 7351 1.553704 GATGGTTCCCGTTGGACTAGT 59.446 52.381 0.00 0.00 41.57 2.57
5581 7352 1.831736 AGATGGTTCCCGTTGGACTAG 59.168 52.381 0.00 0.00 41.57 2.57
5582 7353 1.553248 CAGATGGTTCCCGTTGGACTA 59.447 52.381 0.00 0.00 41.57 2.59
5583 7354 0.324943 CAGATGGTTCCCGTTGGACT 59.675 55.000 0.00 0.00 41.57 3.85
5584 7355 0.036306 ACAGATGGTTCCCGTTGGAC 59.964 55.000 0.00 0.00 41.57 4.02
5585 7356 0.323629 GACAGATGGTTCCCGTTGGA 59.676 55.000 0.00 0.00 39.54 3.53
5586 7357 0.036164 TGACAGATGGTTCCCGTTGG 59.964 55.000 0.00 0.00 0.00 3.77
5587 7358 2.113860 ATGACAGATGGTTCCCGTTG 57.886 50.000 0.00 0.00 0.00 4.10
5588 7359 3.992943 TTATGACAGATGGTTCCCGTT 57.007 42.857 0.00 0.00 0.00 4.44
5589 7360 3.454447 TGATTATGACAGATGGTTCCCGT 59.546 43.478 0.00 0.00 0.00 5.28
5590 7361 4.071961 TGATTATGACAGATGGTTCCCG 57.928 45.455 0.00 0.00 0.00 5.14
5591 7362 4.217118 GCATGATTATGACAGATGGTTCCC 59.783 45.833 0.85 0.00 36.36 3.97
5592 7363 5.068636 AGCATGATTATGACAGATGGTTCC 58.931 41.667 0.85 0.00 36.36 3.62
5593 7364 5.761726 TGAGCATGATTATGACAGATGGTTC 59.238 40.000 0.85 0.00 36.36 3.62
5594 7365 5.687780 TGAGCATGATTATGACAGATGGTT 58.312 37.500 0.85 0.00 36.36 3.67
5595 7366 5.300411 TGAGCATGATTATGACAGATGGT 57.700 39.130 0.85 0.00 36.36 3.55
5596 7367 6.628919 TTTGAGCATGATTATGACAGATGG 57.371 37.500 0.85 0.00 36.36 3.51
5597 7368 7.595130 CCATTTTGAGCATGATTATGACAGATG 59.405 37.037 0.85 8.33 36.36 2.90
5598 7369 7.255836 CCCATTTTGAGCATGATTATGACAGAT 60.256 37.037 0.85 0.00 36.36 2.90
5599 7370 6.040054 CCCATTTTGAGCATGATTATGACAGA 59.960 38.462 0.85 0.00 36.36 3.41
5600 7371 6.213677 CCCATTTTGAGCATGATTATGACAG 58.786 40.000 0.85 0.00 36.36 3.51
5601 7372 5.452216 GCCCATTTTGAGCATGATTATGACA 60.452 40.000 0.85 0.00 36.36 3.58
5602 7373 4.986659 GCCCATTTTGAGCATGATTATGAC 59.013 41.667 0.85 0.00 36.36 3.06
5603 7374 4.650131 TGCCCATTTTGAGCATGATTATGA 59.350 37.500 0.85 0.00 36.36 2.15
5604 7375 4.951254 TGCCCATTTTGAGCATGATTATG 58.049 39.130 0.00 0.00 37.36 1.90
5605 7376 5.617528 TTGCCCATTTTGAGCATGATTAT 57.382 34.783 0.00 0.00 36.20 1.28
5606 7377 5.417754 TTTGCCCATTTTGAGCATGATTA 57.582 34.783 0.00 0.00 36.20 1.75
5607 7378 3.985019 TTGCCCATTTTGAGCATGATT 57.015 38.095 0.00 0.00 36.20 2.57
5608 7379 3.869065 CTTTGCCCATTTTGAGCATGAT 58.131 40.909 0.00 0.00 36.20 2.45
5609 7380 2.613474 GCTTTGCCCATTTTGAGCATGA 60.613 45.455 0.00 0.00 36.20 3.07
5610 7381 1.735571 GCTTTGCCCATTTTGAGCATG 59.264 47.619 0.00 0.00 36.20 4.06
5611 7382 1.626825 AGCTTTGCCCATTTTGAGCAT 59.373 42.857 0.00 0.00 36.20 3.79
5612 7383 1.050204 AGCTTTGCCCATTTTGAGCA 58.950 45.000 0.00 0.00 32.78 4.26
5613 7384 1.270465 ACAGCTTTGCCCATTTTGAGC 60.270 47.619 0.00 0.00 0.00 4.26
5614 7385 2.803956 CAACAGCTTTGCCCATTTTGAG 59.196 45.455 0.00 0.00 0.00 3.02
5615 7386 2.433604 TCAACAGCTTTGCCCATTTTGA 59.566 40.909 0.00 0.00 0.00 2.69
5616 7387 2.545106 GTCAACAGCTTTGCCCATTTTG 59.455 45.455 0.00 0.00 0.00 2.44
5617 7388 2.435437 AGTCAACAGCTTTGCCCATTTT 59.565 40.909 0.00 0.00 0.00 1.82
5618 7389 2.041701 AGTCAACAGCTTTGCCCATTT 58.958 42.857 0.00 0.00 0.00 2.32
5619 7390 1.342174 CAGTCAACAGCTTTGCCCATT 59.658 47.619 0.00 0.00 0.00 3.16
5620 7391 0.963962 CAGTCAACAGCTTTGCCCAT 59.036 50.000 0.00 0.00 0.00 4.00
5621 7392 1.108727 CCAGTCAACAGCTTTGCCCA 61.109 55.000 0.00 0.00 0.00 5.36
5622 7393 1.109323 ACCAGTCAACAGCTTTGCCC 61.109 55.000 0.00 0.00 0.00 5.36
5623 7394 0.031178 CACCAGTCAACAGCTTTGCC 59.969 55.000 0.00 0.00 0.00 4.52
5624 7395 0.031178 CCACCAGTCAACAGCTTTGC 59.969 55.000 0.00 0.00 0.00 3.68
5625 7396 1.392589 ACCACCAGTCAACAGCTTTG 58.607 50.000 0.00 0.00 0.00 2.77
5626 7397 2.143876 AACCACCAGTCAACAGCTTT 57.856 45.000 0.00 0.00 0.00 3.51
5627 7398 2.024414 GAAACCACCAGTCAACAGCTT 58.976 47.619 0.00 0.00 0.00 3.74
5628 7399 1.212935 AGAAACCACCAGTCAACAGCT 59.787 47.619 0.00 0.00 0.00 4.24
5629 7400 1.334869 CAGAAACCACCAGTCAACAGC 59.665 52.381 0.00 0.00 0.00 4.40
5630 7401 1.334869 GCAGAAACCACCAGTCAACAG 59.665 52.381 0.00 0.00 0.00 3.16
5631 7402 1.340502 TGCAGAAACCACCAGTCAACA 60.341 47.619 0.00 0.00 0.00 3.33
5632 7403 1.388547 TGCAGAAACCACCAGTCAAC 58.611 50.000 0.00 0.00 0.00 3.18
5633 7404 2.136298 TTGCAGAAACCACCAGTCAA 57.864 45.000 0.00 0.00 0.00 3.18
5634 7405 2.136298 TTTGCAGAAACCACCAGTCA 57.864 45.000 0.00 0.00 0.00 3.41
5635 7406 3.518634 TTTTTGCAGAAACCACCAGTC 57.481 42.857 0.00 0.00 0.00 3.51
5652 7423 5.056480 GGTTTTGTGCTGAGCCTAATTTTT 58.944 37.500 0.23 0.00 0.00 1.94
5653 7424 4.631131 GGTTTTGTGCTGAGCCTAATTTT 58.369 39.130 0.23 0.00 0.00 1.82
5654 7425 3.305335 CGGTTTTGTGCTGAGCCTAATTT 60.305 43.478 0.23 0.00 0.00 1.82
5655 7426 2.228822 CGGTTTTGTGCTGAGCCTAATT 59.771 45.455 0.23 0.00 0.00 1.40
5656 7427 1.812571 CGGTTTTGTGCTGAGCCTAAT 59.187 47.619 0.23 0.00 0.00 1.73
5657 7428 1.234821 CGGTTTTGTGCTGAGCCTAA 58.765 50.000 0.23 0.00 0.00 2.69
5658 7429 0.107831 ACGGTTTTGTGCTGAGCCTA 59.892 50.000 0.23 0.00 0.00 3.93
5659 7430 0.107831 TACGGTTTTGTGCTGAGCCT 59.892 50.000 0.23 0.00 0.00 4.58
5660 7431 0.517316 CTACGGTTTTGTGCTGAGCC 59.483 55.000 0.23 0.00 0.00 4.70
5661 7432 1.508632 TCTACGGTTTTGTGCTGAGC 58.491 50.000 0.00 0.00 0.00 4.26
5662 7433 3.131396 ACTTCTACGGTTTTGTGCTGAG 58.869 45.455 0.00 0.00 0.00 3.35
5663 7434 3.128349 GACTTCTACGGTTTTGTGCTGA 58.872 45.455 0.00 0.00 0.00 4.26
5664 7435 3.131396 AGACTTCTACGGTTTTGTGCTG 58.869 45.455 0.00 0.00 0.00 4.41
5665 7436 3.470645 AGACTTCTACGGTTTTGTGCT 57.529 42.857 0.00 0.00 0.00 4.40
5666 7437 3.558418 TGAAGACTTCTACGGTTTTGTGC 59.442 43.478 16.02 0.00 0.00 4.57
5667 7438 5.728351 TTGAAGACTTCTACGGTTTTGTG 57.272 39.130 16.02 0.00 0.00 3.33
5668 7439 5.820947 ACATTGAAGACTTCTACGGTTTTGT 59.179 36.000 16.02 6.20 0.00 2.83
5669 7440 6.018262 TGACATTGAAGACTTCTACGGTTTTG 60.018 38.462 16.02 5.63 0.00 2.44
5670 7441 6.053005 TGACATTGAAGACTTCTACGGTTTT 58.947 36.000 16.02 0.00 0.00 2.43
5671 7442 5.607477 TGACATTGAAGACTTCTACGGTTT 58.393 37.500 16.02 0.00 0.00 3.27
5672 7443 5.209818 TGACATTGAAGACTTCTACGGTT 57.790 39.130 16.02 0.00 0.00 4.44
5673 7444 4.866508 TGACATTGAAGACTTCTACGGT 57.133 40.909 16.02 10.33 0.00 4.83
5674 7445 5.639506 ACAATGACATTGAAGACTTCTACGG 59.360 40.000 30.23 7.49 42.83 4.02
5675 7446 6.712241 ACAATGACATTGAAGACTTCTACG 57.288 37.500 30.23 4.04 42.83 3.51
5676 7447 8.660373 CCTTACAATGACATTGAAGACTTCTAC 58.340 37.037 30.23 4.33 42.83 2.59
5677 7448 7.824289 CCCTTACAATGACATTGAAGACTTCTA 59.176 37.037 30.23 9.19 42.83 2.10
5678 7449 6.656693 CCCTTACAATGACATTGAAGACTTCT 59.343 38.462 30.23 11.12 42.83 2.85
5679 7450 6.655003 TCCCTTACAATGACATTGAAGACTTC 59.345 38.462 30.23 8.34 42.83 3.01
5680 7451 6.542821 TCCCTTACAATGACATTGAAGACTT 58.457 36.000 30.23 12.41 42.83 3.01
5681 7452 6.126863 TCCCTTACAATGACATTGAAGACT 57.873 37.500 30.23 13.06 42.83 3.24
5682 7453 6.817765 TTCCCTTACAATGACATTGAAGAC 57.182 37.500 30.23 0.00 42.83 3.01
5683 7454 7.831691 TTTTCCCTTACAATGACATTGAAGA 57.168 32.000 30.23 16.78 42.83 2.87
5826 8156 6.619874 GCATCAAGGAAGATTTTGCATTTGTG 60.620 38.462 0.00 0.00 0.00 3.33
5852 8182 0.036010 CACGAATGGAGCCTTCTGGT 60.036 55.000 0.00 0.00 35.27 4.00
5869 8199 3.990959 AATCTCTCAAGTTCTCCCCAC 57.009 47.619 0.00 0.00 0.00 4.61
5895 8225 4.875536 AGCCAAATTCAGGACAAAACAAAC 59.124 37.500 1.27 0.00 0.00 2.93
5942 8273 8.433126 CAAGAAGAATCAATTGCTCAAATCAAC 58.567 33.333 0.00 0.00 0.00 3.18
5945 8276 8.530269 AACAAGAAGAATCAATTGCTCAAATC 57.470 30.769 0.00 1.29 0.00 2.17
5993 8327 2.227194 GAGGTTTTGAAAAGAGCGGGA 58.773 47.619 0.00 0.00 0.00 5.14
6012 8346 3.332034 TCTGACTTCACAGATACGTCGA 58.668 45.455 0.00 0.00 41.21 4.20
6013 8347 3.741805 TCTGACTTCACAGATACGTCG 57.258 47.619 0.00 0.00 41.21 5.12
6060 8396 9.701098 AGTTATACAAGACACGTTGAATTTCTA 57.299 29.630 0.00 0.00 0.00 2.10
6093 8431 1.514678 GCACGGTGTTTCTCCATGCA 61.515 55.000 10.24 0.00 42.63 3.96
6112 8450 0.739112 GAGGTCGCCTCTGAAAGCAG 60.739 60.000 15.90 0.00 46.41 4.24
6124 8462 5.559799 GCTTCAGATATCATTTTGAGGTCGC 60.560 44.000 5.32 0.00 0.00 5.19
6126 8464 6.541641 ACTGCTTCAGATATCATTTTGAGGTC 59.458 38.462 5.32 0.00 35.18 3.85
6183 8521 7.278461 TCGAAACCTAAAATGTTGGATTGAA 57.722 32.000 0.00 0.00 0.00 2.69
6197 8535 6.483974 TGCACAAAATCTACTTCGAAACCTAA 59.516 34.615 0.00 0.00 0.00 2.69
6219 8557 2.680805 GCTCTGGCCACTAGTTATTGCA 60.681 50.000 0.00 0.00 0.00 4.08
6220 8558 1.943340 GCTCTGGCCACTAGTTATTGC 59.057 52.381 0.00 0.00 0.00 3.56
6226 8564 0.035458 GTTGTGCTCTGGCCACTAGT 59.965 55.000 0.00 0.00 37.74 2.57
6227 8565 1.016130 CGTTGTGCTCTGGCCACTAG 61.016 60.000 0.00 3.17 37.74 2.57
6228 8566 1.005037 CGTTGTGCTCTGGCCACTA 60.005 57.895 0.00 0.00 37.74 2.74
6241 8614 3.575351 GACTGAGAGGCGCCGTTGT 62.575 63.158 23.20 16.48 0.00 3.32
6270 8643 2.091588 CACACGTCGGAATTAAGGTTCG 59.908 50.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.