Multiple sequence alignment - TraesCS5A01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G123700 chr5A 100.000 6804 0 0 1 6804 270178780 270171977 0.000000e+00 12565.0
1 TraesCS5A01G123700 chr5A 84.091 88 8 5 6522 6608 639189330 639189412 5.660000e-11 80.5
2 TraesCS5A01G123700 chr5A 93.182 44 2 1 6117 6160 675451989 675452031 5.700000e-06 63.9
3 TraesCS5A01G123700 chr5D 95.951 5607 149 19 819 6391 209309984 209304422 0.000000e+00 9025.0
4 TraesCS5A01G123700 chr5D 83.777 413 33 18 406 795 209310374 209309973 1.800000e-95 361.0
5 TraesCS5A01G123700 chr5D 96.875 128 4 0 1 128 209310657 209310530 1.490000e-51 215.0
6 TraesCS5A01G123700 chr5D 90.385 104 10 0 3322 3425 209307348 209307245 3.310000e-28 137.0
7 TraesCS5A01G123700 chr5D 93.333 45 2 1 6124 6168 442203758 442203715 1.580000e-06 65.8
8 TraesCS5A01G123700 chr5B 96.802 3846 77 10 2290 6126 222365209 222361401 0.000000e+00 6379.0
9 TraesCS5A01G123700 chr5B 94.299 1719 63 14 1 1695 222368405 222366698 0.000000e+00 2599.0
10 TraesCS5A01G123700 chr5B 93.049 633 23 3 1675 2291 222366660 222366033 0.000000e+00 905.0
11 TraesCS5A01G123700 chr5B 93.145 248 12 5 6162 6406 222361231 222360986 6.490000e-95 359.0
12 TraesCS5A01G123700 chr5B 88.000 75 3 5 6537 6610 570315091 570315022 4.370000e-12 84.2
13 TraesCS5A01G123700 chr4A 81.349 252 45 2 1129 1379 501966750 501966500 3.220000e-48 204.0
14 TraesCS5A01G123700 chr4D 80.876 251 46 2 1130 1379 89427164 89426915 5.380000e-46 196.0
15 TraesCS5A01G123700 chr4D 81.522 92 10 6 6522 6610 508673150 508673063 1.220000e-07 69.4
16 TraesCS5A01G123700 chr4B 80.159 252 48 2 1129 1379 126327774 126327524 3.240000e-43 187.0
17 TraesCS5A01G123700 chr3D 77.848 316 35 22 1309 1615 442505301 442505590 5.460000e-36 163.0
18 TraesCS5A01G123700 chr3D 95.122 41 2 0 6117 6157 89637313 89637273 1.580000e-06 65.8
19 TraesCS5A01G123700 chr6D 84.615 91 10 1 6520 6610 461690208 461690122 3.380000e-13 87.9
20 TraesCS5A01G123700 chr6D 83.516 91 11 1 6523 6613 91845503 91845417 1.570000e-11 82.4
21 TraesCS5A01G123700 chr6D 85.135 74 4 4 6537 6609 148519554 148519621 1.220000e-07 69.4
22 TraesCS5A01G123700 chr1D 84.270 89 10 1 6522 6610 253197621 253197537 4.370000e-12 84.2
23 TraesCS5A01G123700 chr1D 90.196 51 2 3 6117 6164 295968784 295968834 5.700000e-06 63.9
24 TraesCS5A01G123700 chr2D 95.349 43 2 0 6118 6160 86080960 86081002 1.220000e-07 69.4
25 TraesCS5A01G123700 chr2A 95.349 43 2 0 6118 6160 86440590 86440632 1.220000e-07 69.4
26 TraesCS5A01G123700 chrUn 95.238 42 2 0 6124 6165 19234393 19234352 4.400000e-07 67.6
27 TraesCS5A01G123700 chr7A 82.143 84 9 3 6537 6619 195176550 195176628 4.400000e-07 67.6
28 TraesCS5A01G123700 chr3B 84.211 76 4 6 6537 6610 763058171 763058240 4.400000e-07 67.6
29 TraesCS5A01G123700 chr3B 93.182 44 2 1 6117 6160 132085544 132085502 5.700000e-06 63.9
30 TraesCS5A01G123700 chr1B 93.182 44 2 1 6117 6160 593785942 593785984 5.700000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G123700 chr5A 270171977 270178780 6803 True 12565.0 12565 100.00000 1 6804 1 chr5A.!!$R1 6803
1 TraesCS5A01G123700 chr5D 209304422 209310657 6235 True 2434.5 9025 91.74700 1 6391 4 chr5D.!!$R2 6390
2 TraesCS5A01G123700 chr5B 222360986 222368405 7419 True 2560.5 6379 94.32375 1 6406 4 chr5B.!!$R2 6405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 602 0.252239 TAGGAGGAGGCTGTGCTCAA 60.252 55.0 0.0 0.0 45.4 3.02 F
638 738 0.252742 GGGAGGTGGAAGAGGAGGAA 60.253 60.0 0.0 0.0 0.0 3.36 F
1392 1507 0.997307 TCCTCCCGTCCCATCTCCTA 60.997 60.0 0.0 0.0 0.0 2.94 F
2127 2314 0.246635 GGTCATATCCGCCGCAGTAT 59.753 55.0 0.0 0.0 0.0 2.12 F
3159 4171 1.420430 TCCTCCGTGTCCACTTCTTT 58.580 50.0 0.0 0.0 0.0 2.52 F
4931 5944 0.529833 CACAACAAGCACACCACCAA 59.470 50.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1585 0.604780 AACGAGCAGCAGCAGTGAAT 60.605 50.0 3.17 0.00 45.49 2.57 R
1485 1601 0.802994 ATGGCAATGCATCGCAAACG 60.803 50.0 12.49 0.00 43.62 3.60 R
3203 4215 0.250901 TGCTTGAAGCTTCTGTCCCC 60.251 55.0 26.09 9.84 42.97 4.81 R
3231 4243 0.252479 AGATGCAGCTGGGTTCTCAG 59.748 55.0 17.12 0.00 37.79 3.35 R
4939 5952 1.031235 TTGGTGGAGTGCATGTTGTG 58.969 50.0 0.00 0.00 0.00 3.33 R
6670 7825 0.094558 GTGTGTGTGTGTGTGTGACG 59.905 55.0 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.517901 AGTCGGACACCATCAAAATCCTA 59.482 43.478 11.27 0.00 0.00 2.94
104 105 7.962918 GCGTGTGAAATCTGAAATAACATAAGT 59.037 33.333 0.00 0.00 0.00 2.24
207 287 9.260002 GAAAAGAATTGAGCATGAAAGGTTTTA 57.740 29.630 0.00 0.00 0.00 1.52
298 380 3.619233 ACCAACGTAACAGTTCAATGC 57.381 42.857 0.00 0.00 30.96 3.56
384 466 4.994471 CACTCGCAGGTGCAGCCA 62.994 66.667 13.29 0.00 42.21 4.75
518 602 0.252239 TAGGAGGAGGCTGTGCTCAA 60.252 55.000 0.00 0.00 45.40 3.02
544 628 2.724977 TGTGACGAGTAGCTGAAAGG 57.275 50.000 0.00 0.00 0.00 3.11
547 631 1.819288 TGACGAGTAGCTGAAAGGAGG 59.181 52.381 0.00 0.00 0.00 4.30
548 632 0.533032 ACGAGTAGCTGAAAGGAGGC 59.467 55.000 0.00 0.00 0.00 4.70
549 633 0.532573 CGAGTAGCTGAAAGGAGGCA 59.467 55.000 0.00 0.00 0.00 4.75
638 738 0.252742 GGGAGGTGGAAGAGGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
639 739 1.199615 GGAGGTGGAAGAGGAGGAAG 58.800 60.000 0.00 0.00 0.00 3.46
640 740 1.273324 GGAGGTGGAAGAGGAGGAAGA 60.273 57.143 0.00 0.00 0.00 2.87
723 828 2.665603 GGAGCGGACAGGAGCTTT 59.334 61.111 0.00 0.00 44.69 3.51
765 878 1.150536 GGGAATAAGCGGGCATCCA 59.849 57.895 0.00 0.00 31.63 3.41
766 879 1.172812 GGGAATAAGCGGGCATCCAC 61.173 60.000 0.00 0.00 31.63 4.02
767 880 1.172812 GGAATAAGCGGGCATCCACC 61.173 60.000 0.00 0.00 0.00 4.61
779 892 3.161450 TCCACCGGGATGGCTAGC 61.161 66.667 6.04 6.04 43.94 3.42
780 893 3.479203 CCACCGGGATGGCTAGCA 61.479 66.667 18.24 2.97 43.94 3.49
800 913 3.423206 GCAGAGAGAAATGCGTTTTTGTG 59.577 43.478 5.17 5.09 31.87 3.33
1392 1507 0.997307 TCCTCCCGTCCCATCTCCTA 60.997 60.000 0.00 0.00 0.00 2.94
1405 1520 4.101119 CCCATCTCCTATTCCGTTACACTT 59.899 45.833 0.00 0.00 0.00 3.16
1439 1554 5.163248 TGTGCGATTCTCTATTATTTGGGGA 60.163 40.000 0.00 0.00 0.00 4.81
1469 1585 1.403323 TGTGCATTTCGCTTGTTGTGA 59.597 42.857 0.00 0.00 43.06 3.58
1471 1587 3.052036 GTGCATTTCGCTTGTTGTGATT 58.948 40.909 0.00 0.00 43.06 2.57
1485 1601 0.447011 GTGATTCACTGCTGCTGCTC 59.553 55.000 17.00 5.31 40.48 4.26
1535 1651 4.090354 GCGTTGTTAGTACGTATGCTTGAA 59.910 41.667 0.00 0.00 40.92 2.69
1665 1781 5.530519 TGCATAGAGTCGAATTGAACAAC 57.469 39.130 0.00 0.00 0.00 3.32
1682 1798 2.126888 CGGAAACCATGTGTGCGC 60.127 61.111 0.00 0.00 26.53 6.09
1933 2104 7.186570 AGTCATTCCTTCAAATTTTATGGGG 57.813 36.000 4.87 0.00 0.00 4.96
1953 2124 7.789202 TGGGGAAAATTCATGATGTTTCTTA 57.211 32.000 21.69 11.68 31.94 2.10
1992 2163 5.700832 TCGATAAAATATTAGGCAGTGCTGG 59.299 40.000 16.11 0.00 0.00 4.85
1993 2164 5.700832 CGATAAAATATTAGGCAGTGCTGGA 59.299 40.000 16.11 1.01 0.00 3.86
2005 2176 0.610232 GTGCTGGAGCCATGTTTCCT 60.610 55.000 12.42 0.00 41.18 3.36
2045 2216 5.988287 TGCTATCATGTGATTAGGTTGACA 58.012 37.500 0.19 0.00 36.05 3.58
2127 2314 0.246635 GGTCATATCCGCCGCAGTAT 59.753 55.000 0.00 0.00 0.00 2.12
2272 2459 7.902920 AACAATATTAGCATCCTCATTGGTT 57.097 32.000 0.00 0.00 37.07 3.67
2297 3309 6.016360 TCTCTCGAATTTCTTCAAATTTGGCA 60.016 34.615 17.90 4.75 41.47 4.92
2298 3310 6.690530 TCTCGAATTTCTTCAAATTTGGCAT 58.309 32.000 17.90 1.32 41.47 4.40
2404 3416 6.374333 TCAATAATGTAGGTGGAAAGAACAGC 59.626 38.462 0.00 0.00 36.64 4.40
2766 3778 2.679837 CAACACCAGTACCATCTGATGC 59.320 50.000 12.17 0.00 32.55 3.91
2837 3849 2.693591 GTGGTTGATGGGATACGAGAGA 59.306 50.000 0.00 0.00 37.60 3.10
3104 4116 6.998074 TGAAAGTGATGTCAAGGACAATAACT 59.002 34.615 2.87 4.97 45.96 2.24
3159 4171 1.420430 TCCTCCGTGTCCACTTCTTT 58.580 50.000 0.00 0.00 0.00 2.52
3203 4215 6.574350 ACCCTAAGTTCTCAAAGTATCATCG 58.426 40.000 0.00 0.00 0.00 3.84
3231 4243 4.329528 CAGAAGCTTCAAGCAGACTGTATC 59.670 45.833 27.57 0.00 45.56 2.24
3336 4348 2.097825 GAATGCAAGGCCAGAATCACT 58.902 47.619 5.01 0.00 0.00 3.41
3373 4385 0.846427 TTGATGCCCCTGGAACTCCT 60.846 55.000 0.00 0.00 36.82 3.69
3377 4389 1.201429 TGCCCCTGGAACTCCTTCTC 61.201 60.000 0.00 0.00 36.82 2.87
3573 4585 0.833287 GGCCCTGAGAGTGCTAATCA 59.167 55.000 0.00 0.00 0.00 2.57
3767 4779 7.639113 AACTTTTCAACTTTGTCTGACCATA 57.361 32.000 5.17 0.00 0.00 2.74
3843 4855 3.594603 TCTCCAGAACTCGAAACCATC 57.405 47.619 0.00 0.00 0.00 3.51
4204 5216 8.986477 AATTTTATTTCATGCCTTGTAGTCAC 57.014 30.769 0.00 0.00 0.00 3.67
4205 5217 7.759489 TTTTATTTCATGCCTTGTAGTCACT 57.241 32.000 0.00 0.00 0.00 3.41
4269 5281 4.460263 ACCAGTGAAGTCTTGCATGTAAA 58.540 39.130 0.00 0.00 0.00 2.01
4311 5323 7.624360 AGTATTTCTGTTTGTGTGTCTGAAA 57.376 32.000 0.00 0.00 35.06 2.69
4360 5372 7.883311 CCAGTTCAACTAAGGAGAAGGAAATAA 59.117 37.037 0.00 0.00 0.00 1.40
4411 5423 2.420408 GCTGCCAACAAATATGCCCATT 60.420 45.455 0.00 0.00 0.00 3.16
4436 5448 3.285484 AGATAGGTTTGCTTGCATGAGG 58.715 45.455 3.33 0.00 0.00 3.86
4491 5503 3.131933 TGCCTTGCTGCTTTAAAACTTCA 59.868 39.130 0.00 0.00 0.00 3.02
4691 5704 4.537135 TTGGCTCGATCACTTTAAGAGT 57.463 40.909 0.00 0.00 39.89 3.24
4794 5807 2.670414 GCCTTGTCGAGAAAGATGTCAG 59.330 50.000 8.95 0.00 0.00 3.51
4923 5936 3.983344 CCAAATTCTAGCACAACAAGCAC 59.017 43.478 0.00 0.00 0.00 4.40
4924 5937 4.499526 CCAAATTCTAGCACAACAAGCACA 60.500 41.667 0.00 0.00 0.00 4.57
4925 5938 3.904136 ATTCTAGCACAACAAGCACAC 57.096 42.857 0.00 0.00 0.00 3.82
4926 5939 1.593196 TCTAGCACAACAAGCACACC 58.407 50.000 0.00 0.00 0.00 4.16
4927 5940 1.134250 TCTAGCACAACAAGCACACCA 60.134 47.619 0.00 0.00 0.00 4.17
4928 5941 1.002468 CTAGCACAACAAGCACACCAC 60.002 52.381 0.00 0.00 0.00 4.16
4929 5942 1.226945 GCACAACAAGCACACCACC 60.227 57.895 0.00 0.00 0.00 4.61
4930 5943 1.943116 GCACAACAAGCACACCACCA 61.943 55.000 0.00 0.00 0.00 4.17
4931 5944 0.529833 CACAACAAGCACACCACCAA 59.470 50.000 0.00 0.00 0.00 3.67
4932 5945 1.067283 CACAACAAGCACACCACCAAA 60.067 47.619 0.00 0.00 0.00 3.28
4933 5946 1.830477 ACAACAAGCACACCACCAAAT 59.170 42.857 0.00 0.00 0.00 2.32
4934 5947 2.235898 ACAACAAGCACACCACCAAATT 59.764 40.909 0.00 0.00 0.00 1.82
4935 5948 2.865551 CAACAAGCACACCACCAAATTC 59.134 45.455 0.00 0.00 0.00 2.17
4936 5949 2.387757 ACAAGCACACCACCAAATTCT 58.612 42.857 0.00 0.00 0.00 2.40
4937 5950 3.561143 ACAAGCACACCACCAAATTCTA 58.439 40.909 0.00 0.00 0.00 2.10
4938 5951 3.569701 ACAAGCACACCACCAAATTCTAG 59.430 43.478 0.00 0.00 0.00 2.43
4939 5952 2.162681 AGCACACCACCAAATTCTAGC 58.837 47.619 0.00 0.00 0.00 3.42
4940 5953 1.885887 GCACACCACCAAATTCTAGCA 59.114 47.619 0.00 0.00 0.00 3.49
4941 5954 2.351738 GCACACCACCAAATTCTAGCAC 60.352 50.000 0.00 0.00 0.00 4.40
4942 5955 2.884012 CACACCACCAAATTCTAGCACA 59.116 45.455 0.00 0.00 0.00 4.57
4943 5956 3.317711 CACACCACCAAATTCTAGCACAA 59.682 43.478 0.00 0.00 0.00 3.33
4944 5957 3.317993 ACACCACCAAATTCTAGCACAAC 59.682 43.478 0.00 0.00 0.00 3.32
4945 5958 3.317711 CACCACCAAATTCTAGCACAACA 59.682 43.478 0.00 0.00 0.00 3.33
4946 5959 4.022068 CACCACCAAATTCTAGCACAACAT 60.022 41.667 0.00 0.00 0.00 2.71
4947 5960 4.022068 ACCACCAAATTCTAGCACAACATG 60.022 41.667 0.00 0.00 0.00 3.21
5098 6111 3.314357 GTGGTGACAAAGGTAGGACAAAC 59.686 47.826 0.00 0.00 46.06 2.93
5203 6216 3.192001 ACATCAGCATTTTCAAGCGTCAT 59.808 39.130 0.00 0.00 35.48 3.06
5598 6611 1.538047 GATGGCTCTGGCAAGAAACA 58.462 50.000 0.00 0.00 42.43 2.83
5718 6731 7.308830 GCAGTATTCCTTTGTTTCATCAGACTT 60.309 37.037 0.00 0.00 0.00 3.01
5823 6836 0.460811 TGAGCTGGTAATCGCAGCAG 60.461 55.000 13.33 9.74 44.92 4.24
5886 6899 1.416401 CTACCCCGTTGCCATACTGAT 59.584 52.381 0.00 0.00 0.00 2.90
5905 6918 2.021068 TAGCTGGCATGCTCCTCGTC 62.021 60.000 18.92 0.00 42.97 4.20
5907 6920 3.746949 CTGGCATGCTCCTCGTCCC 62.747 68.421 18.92 0.00 0.00 4.46
5918 6931 1.335810 TCCTCGTCCCGATTATGTTCG 59.664 52.381 0.00 0.00 34.61 3.95
6028 7042 1.203052 TCTTGTAAGGCTAACCCGACG 59.797 52.381 0.00 0.00 39.21 5.12
6046 7060 2.939103 GACGAGCTTCATTTAGCATGGT 59.061 45.455 1.62 1.62 43.68 3.55
6072 7086 4.967084 TTAGTTTGCTGAGGGTTCACTA 57.033 40.909 0.00 0.00 0.00 2.74
6073 7087 5.499004 TTAGTTTGCTGAGGGTTCACTAT 57.501 39.130 0.00 0.00 0.00 2.12
6075 7089 4.729868 AGTTTGCTGAGGGTTCACTATTT 58.270 39.130 0.00 0.00 0.00 1.40
6132 7153 1.002502 GGGCCTACCAAAGCGTCTT 60.003 57.895 0.84 0.00 39.85 3.01
6133 7154 0.251073 GGGCCTACCAAAGCGTCTTA 59.749 55.000 0.84 0.00 39.85 2.10
6135 7156 2.103601 GGGCCTACCAAAGCGTCTTATA 59.896 50.000 0.84 0.00 39.85 0.98
6136 7157 3.244457 GGGCCTACCAAAGCGTCTTATAT 60.244 47.826 0.84 0.00 39.85 0.86
6137 7158 4.386711 GGCCTACCAAAGCGTCTTATATT 58.613 43.478 0.00 0.00 35.26 1.28
6140 7161 6.199393 GCCTACCAAAGCGTCTTATATTTTG 58.801 40.000 0.00 0.00 0.00 2.44
6141 7162 6.037830 GCCTACCAAAGCGTCTTATATTTTGA 59.962 38.462 0.00 0.00 32.05 2.69
6142 7163 7.255139 GCCTACCAAAGCGTCTTATATTTTGAT 60.255 37.037 0.00 0.00 32.05 2.57
6143 7164 9.268268 CCTACCAAAGCGTCTTATATTTTGATA 57.732 33.333 0.00 0.00 32.05 2.15
6156 7177 8.716674 TTATATTTTGATACGGAGGGAGTACT 57.283 34.615 0.00 0.00 0.00 2.73
6186 7339 2.904434 AGGTTGAGTTTCTACATCGGGT 59.096 45.455 0.00 0.00 0.00 5.28
6213 7366 7.649306 CAGAGAAAAATAGTTGTTTCCAGTTGG 59.351 37.037 0.00 0.00 34.85 3.77
6261 7414 8.335356 TGTTGCTGATTCTTATATTTTCGCTAC 58.665 33.333 0.00 0.00 0.00 3.58
6270 7423 2.068837 ATTTTCGCTACGTCGGTTGA 57.931 45.000 0.00 0.00 0.00 3.18
6274 7427 1.081641 CGCTACGTCGGTTGACTGT 60.082 57.895 0.00 0.00 43.21 3.55
6375 7529 5.355596 CAGTGTTGCCTTTGGTAATCAAAA 58.644 37.500 0.00 0.00 43.88 2.44
6376 7530 5.463061 CAGTGTTGCCTTTGGTAATCAAAAG 59.537 40.000 0.00 0.00 43.88 2.27
6406 7561 3.818210 TGGTGCGTGTGAAATCTTATTGT 59.182 39.130 0.00 0.00 0.00 2.71
6407 7562 4.277174 TGGTGCGTGTGAAATCTTATTGTT 59.723 37.500 0.00 0.00 0.00 2.83
6408 7563 5.470437 TGGTGCGTGTGAAATCTTATTGTTA 59.530 36.000 0.00 0.00 0.00 2.41
6409 7564 6.021596 GGTGCGTGTGAAATCTTATTGTTAG 58.978 40.000 0.00 0.00 0.00 2.34
6410 7565 5.508224 GTGCGTGTGAAATCTTATTGTTAGC 59.492 40.000 0.00 0.00 0.00 3.09
6411 7566 5.028375 GCGTGTGAAATCTTATTGTTAGCC 58.972 41.667 0.00 0.00 0.00 3.93
6412 7567 5.163754 GCGTGTGAAATCTTATTGTTAGCCT 60.164 40.000 0.00 0.00 0.00 4.58
6413 7568 6.622896 GCGTGTGAAATCTTATTGTTAGCCTT 60.623 38.462 0.00 0.00 0.00 4.35
6414 7569 6.742718 CGTGTGAAATCTTATTGTTAGCCTTG 59.257 38.462 0.00 0.00 0.00 3.61
6415 7570 7.573096 CGTGTGAAATCTTATTGTTAGCCTTGT 60.573 37.037 0.00 0.00 0.00 3.16
6416 7571 7.538678 GTGTGAAATCTTATTGTTAGCCTTGTG 59.461 37.037 0.00 0.00 0.00 3.33
6417 7572 6.528072 GTGAAATCTTATTGTTAGCCTTGTGC 59.472 38.462 0.00 0.00 41.71 4.57
6418 7573 5.582689 AATCTTATTGTTAGCCTTGTGCC 57.417 39.130 0.00 0.00 42.71 5.01
6419 7574 3.006940 TCTTATTGTTAGCCTTGTGCCG 58.993 45.455 0.00 0.00 42.71 5.69
6420 7575 2.483014 TATTGTTAGCCTTGTGCCGT 57.517 45.000 0.00 0.00 42.71 5.68
6421 7576 2.483014 ATTGTTAGCCTTGTGCCGTA 57.517 45.000 0.00 0.00 42.71 4.02
6422 7577 1.803334 TTGTTAGCCTTGTGCCGTAG 58.197 50.000 0.00 0.00 42.71 3.51
6423 7578 0.970640 TGTTAGCCTTGTGCCGTAGA 59.029 50.000 0.00 0.00 42.71 2.59
6424 7579 1.345089 TGTTAGCCTTGTGCCGTAGAA 59.655 47.619 0.00 0.00 42.71 2.10
6425 7580 2.000447 GTTAGCCTTGTGCCGTAGAAG 59.000 52.381 0.00 0.00 42.71 2.85
6426 7581 1.263356 TAGCCTTGTGCCGTAGAAGT 58.737 50.000 0.00 0.00 42.71 3.01
6427 7582 0.396811 AGCCTTGTGCCGTAGAAGTT 59.603 50.000 0.00 0.00 42.71 2.66
6428 7583 0.796927 GCCTTGTGCCGTAGAAGTTC 59.203 55.000 0.00 0.00 0.00 3.01
6429 7584 1.608283 GCCTTGTGCCGTAGAAGTTCT 60.608 52.381 10.87 10.87 0.00 3.01
6430 7585 2.767505 CCTTGTGCCGTAGAAGTTCTT 58.232 47.619 11.40 0.00 0.00 2.52
6431 7586 3.139077 CCTTGTGCCGTAGAAGTTCTTT 58.861 45.455 11.40 0.00 0.00 2.52
6432 7587 3.058914 CCTTGTGCCGTAGAAGTTCTTTG 60.059 47.826 11.40 3.95 0.00 2.77
6433 7588 1.871039 TGTGCCGTAGAAGTTCTTTGC 59.129 47.619 11.40 11.65 0.00 3.68
6434 7589 1.136336 GTGCCGTAGAAGTTCTTTGCG 60.136 52.381 11.40 12.83 0.00 4.85
6435 7590 0.179222 GCCGTAGAAGTTCTTTGCGC 60.179 55.000 11.40 0.00 0.00 6.09
6436 7591 0.442699 CCGTAGAAGTTCTTTGCGCC 59.557 55.000 11.40 0.00 0.00 6.53
6437 7592 0.442699 CGTAGAAGTTCTTTGCGCCC 59.557 55.000 11.40 0.00 0.00 6.13
6438 7593 1.519408 GTAGAAGTTCTTTGCGCCCA 58.481 50.000 11.40 0.00 0.00 5.36
6439 7594 1.197036 GTAGAAGTTCTTTGCGCCCAC 59.803 52.381 11.40 0.00 0.00 4.61
6440 7595 1.172812 AGAAGTTCTTTGCGCCCACC 61.173 55.000 4.18 0.00 0.00 4.61
6441 7596 1.152756 AAGTTCTTTGCGCCCACCT 60.153 52.632 4.18 0.00 0.00 4.00
6442 7597 0.755327 AAGTTCTTTGCGCCCACCTT 60.755 50.000 4.18 0.00 0.00 3.50
6443 7598 0.755327 AGTTCTTTGCGCCCACCTTT 60.755 50.000 4.18 0.00 0.00 3.11
6444 7599 0.597377 GTTCTTTGCGCCCACCTTTG 60.597 55.000 4.18 0.00 0.00 2.77
6445 7600 1.040339 TTCTTTGCGCCCACCTTTGT 61.040 50.000 4.18 0.00 0.00 2.83
6446 7601 1.040339 TCTTTGCGCCCACCTTTGTT 61.040 50.000 4.18 0.00 0.00 2.83
6447 7602 0.671251 CTTTGCGCCCACCTTTGTTA 59.329 50.000 4.18 0.00 0.00 2.41
6448 7603 0.386113 TTTGCGCCCACCTTTGTTAC 59.614 50.000 4.18 0.00 0.00 2.50
6449 7604 0.466555 TTGCGCCCACCTTTGTTACT 60.467 50.000 4.18 0.00 0.00 2.24
6450 7605 0.397187 TGCGCCCACCTTTGTTACTA 59.603 50.000 4.18 0.00 0.00 1.82
6451 7606 1.003812 TGCGCCCACCTTTGTTACTAT 59.996 47.619 4.18 0.00 0.00 2.12
6452 7607 1.400494 GCGCCCACCTTTGTTACTATG 59.600 52.381 0.00 0.00 0.00 2.23
6453 7608 1.400494 CGCCCACCTTTGTTACTATGC 59.600 52.381 0.00 0.00 0.00 3.14
6454 7609 1.749063 GCCCACCTTTGTTACTATGCC 59.251 52.381 0.00 0.00 0.00 4.40
6455 7610 2.375146 CCCACCTTTGTTACTATGCCC 58.625 52.381 0.00 0.00 0.00 5.36
6456 7611 2.014128 CCACCTTTGTTACTATGCCCG 58.986 52.381 0.00 0.00 0.00 6.13
6457 7612 2.617021 CCACCTTTGTTACTATGCCCGT 60.617 50.000 0.00 0.00 0.00 5.28
6458 7613 2.418628 CACCTTTGTTACTATGCCCGTG 59.581 50.000 0.00 0.00 0.00 4.94
6459 7614 2.014128 CCTTTGTTACTATGCCCGTGG 58.986 52.381 0.00 0.00 0.00 4.94
6460 7615 2.355310 CCTTTGTTACTATGCCCGTGGA 60.355 50.000 0.00 0.00 0.00 4.02
6461 7616 2.389962 TTGTTACTATGCCCGTGGAC 57.610 50.000 0.00 0.00 0.00 4.02
6462 7617 0.538118 TGTTACTATGCCCGTGGACC 59.462 55.000 0.00 0.00 0.00 4.46
6463 7618 0.538118 GTTACTATGCCCGTGGACCA 59.462 55.000 0.00 0.00 0.00 4.02
6464 7619 1.140252 GTTACTATGCCCGTGGACCAT 59.860 52.381 0.00 0.00 0.00 3.55
6465 7620 1.045407 TACTATGCCCGTGGACCATC 58.955 55.000 0.00 0.00 0.00 3.51
6466 7621 0.980754 ACTATGCCCGTGGACCATCA 60.981 55.000 0.00 0.00 0.00 3.07
6467 7622 0.250038 CTATGCCCGTGGACCATCAG 60.250 60.000 0.00 0.00 0.00 2.90
6468 7623 0.689412 TATGCCCGTGGACCATCAGA 60.689 55.000 0.00 0.00 0.00 3.27
6469 7624 1.976132 ATGCCCGTGGACCATCAGAG 61.976 60.000 0.00 0.00 0.00 3.35
6470 7625 2.359169 GCCCGTGGACCATCAGAGA 61.359 63.158 0.00 0.00 0.00 3.10
6471 7626 1.690219 GCCCGTGGACCATCAGAGAT 61.690 60.000 0.00 0.00 0.00 2.75
6472 7627 0.105593 CCCGTGGACCATCAGAGATG 59.894 60.000 0.00 0.07 0.00 2.90
6473 7628 0.531532 CCGTGGACCATCAGAGATGC 60.532 60.000 0.00 0.00 0.00 3.91
6474 7629 0.463204 CGTGGACCATCAGAGATGCT 59.537 55.000 0.00 0.00 0.00 3.79
6475 7630 1.537776 CGTGGACCATCAGAGATGCTC 60.538 57.143 0.00 0.00 0.00 4.26
6476 7631 1.761784 GTGGACCATCAGAGATGCTCT 59.238 52.381 0.00 0.00 42.11 4.09
6477 7632 2.170187 GTGGACCATCAGAGATGCTCTT 59.830 50.000 0.00 0.00 38.99 2.85
6478 7633 2.169978 TGGACCATCAGAGATGCTCTTG 59.830 50.000 1.52 0.00 38.99 3.02
6479 7634 2.170187 GGACCATCAGAGATGCTCTTGT 59.830 50.000 1.52 0.00 38.99 3.16
6480 7635 3.370315 GGACCATCAGAGATGCTCTTGTT 60.370 47.826 1.52 0.00 38.99 2.83
6481 7636 3.607741 ACCATCAGAGATGCTCTTGTTG 58.392 45.455 1.52 0.00 38.99 3.33
6482 7637 2.943690 CCATCAGAGATGCTCTTGTTGG 59.056 50.000 1.52 0.00 38.99 3.77
6483 7638 3.370209 CCATCAGAGATGCTCTTGTTGGA 60.370 47.826 9.71 0.00 38.99 3.53
6484 7639 4.452825 CATCAGAGATGCTCTTGTTGGAT 58.547 43.478 0.00 0.00 38.99 3.41
6485 7640 4.134379 TCAGAGATGCTCTTGTTGGATC 57.866 45.455 0.00 0.00 38.99 3.36
6486 7641 3.773667 TCAGAGATGCTCTTGTTGGATCT 59.226 43.478 0.00 0.00 43.55 2.75
6487 7642 3.872182 CAGAGATGCTCTTGTTGGATCTG 59.128 47.826 2.67 0.00 41.51 2.90
6488 7643 3.518705 AGAGATGCTCTTGTTGGATCTGT 59.481 43.478 2.67 0.00 41.51 3.41
6489 7644 3.607741 AGATGCTCTTGTTGGATCTGTG 58.392 45.455 0.00 0.00 40.29 3.66
6490 7645 2.189594 TGCTCTTGTTGGATCTGTGG 57.810 50.000 0.00 0.00 0.00 4.17
6491 7646 1.699083 TGCTCTTGTTGGATCTGTGGA 59.301 47.619 0.00 0.00 0.00 4.02
6492 7647 2.306805 TGCTCTTGTTGGATCTGTGGAT 59.693 45.455 0.00 0.00 34.45 3.41
6493 7648 2.681848 GCTCTTGTTGGATCTGTGGATG 59.318 50.000 0.00 0.00 31.46 3.51
6494 7649 3.276857 CTCTTGTTGGATCTGTGGATGG 58.723 50.000 0.00 0.00 31.46 3.51
6495 7650 2.912295 TCTTGTTGGATCTGTGGATGGA 59.088 45.455 0.00 0.00 31.46 3.41
6496 7651 2.787473 TGTTGGATCTGTGGATGGAC 57.213 50.000 0.00 0.00 31.46 4.02
6497 7652 1.066215 TGTTGGATCTGTGGATGGACG 60.066 52.381 0.00 0.00 31.46 4.79
6498 7653 0.541392 TTGGATCTGTGGATGGACGG 59.459 55.000 0.00 0.00 31.46 4.79
6499 7654 0.325203 TGGATCTGTGGATGGACGGA 60.325 55.000 0.00 0.00 35.68 4.69
6500 7655 0.105039 GGATCTGTGGATGGACGGAC 59.895 60.000 0.00 0.00 34.01 4.79
6501 7656 1.115467 GATCTGTGGATGGACGGACT 58.885 55.000 0.00 0.00 34.01 3.85
6502 7657 1.482593 GATCTGTGGATGGACGGACTT 59.517 52.381 0.00 0.00 34.01 3.01
6503 7658 0.608130 TCTGTGGATGGACGGACTTG 59.392 55.000 0.00 0.00 0.00 3.16
6504 7659 0.391661 CTGTGGATGGACGGACTTGG 60.392 60.000 0.00 0.00 0.00 3.61
6505 7660 0.834261 TGTGGATGGACGGACTTGGA 60.834 55.000 0.00 0.00 0.00 3.53
6506 7661 0.541863 GTGGATGGACGGACTTGGAT 59.458 55.000 0.00 0.00 0.00 3.41
6507 7662 0.541392 TGGATGGACGGACTTGGATG 59.459 55.000 0.00 0.00 0.00 3.51
6508 7663 0.830648 GGATGGACGGACTTGGATGA 59.169 55.000 0.00 0.00 0.00 2.92
6509 7664 1.473434 GGATGGACGGACTTGGATGAC 60.473 57.143 0.00 0.00 0.00 3.06
6510 7665 0.541863 ATGGACGGACTTGGATGACC 59.458 55.000 0.00 0.00 0.00 4.02
6511 7666 1.221021 GGACGGACTTGGATGACCC 59.779 63.158 0.00 0.00 34.81 4.46
6512 7667 1.550130 GGACGGACTTGGATGACCCA 61.550 60.000 0.00 0.00 44.93 4.51
6513 7668 0.541863 GACGGACTTGGATGACCCAT 59.458 55.000 0.00 0.00 46.10 4.00
6514 7669 0.541863 ACGGACTTGGATGACCCATC 59.458 55.000 0.00 0.00 46.10 3.51
6515 7670 0.541392 CGGACTTGGATGACCCATCA 59.459 55.000 8.91 0.00 46.10 3.07
6516 7671 1.743772 CGGACTTGGATGACCCATCAC 60.744 57.143 8.91 0.39 46.10 3.06
6517 7672 1.281867 GGACTTGGATGACCCATCACA 59.718 52.381 8.91 2.66 46.10 3.58
6518 7673 2.290896 GGACTTGGATGACCCATCACAA 60.291 50.000 8.91 9.00 46.10 3.33
6519 7674 3.624777 GACTTGGATGACCCATCACAAT 58.375 45.455 8.91 2.90 46.10 2.71
6520 7675 4.385199 GGACTTGGATGACCCATCACAATA 60.385 45.833 8.91 0.00 46.10 1.90
6521 7676 4.785301 ACTTGGATGACCCATCACAATAG 58.215 43.478 8.91 3.69 46.10 1.73
6522 7677 4.228210 ACTTGGATGACCCATCACAATAGT 59.772 41.667 8.91 4.16 46.10 2.12
6523 7678 5.428457 ACTTGGATGACCCATCACAATAGTA 59.572 40.000 8.91 0.00 46.10 1.82
6524 7679 5.290493 TGGATGACCCATCACAATAGTAC 57.710 43.478 8.91 0.00 42.13 2.73
6525 7680 4.968719 TGGATGACCCATCACAATAGTACT 59.031 41.667 0.00 0.00 42.13 2.73
6526 7681 5.070446 TGGATGACCCATCACAATAGTACTC 59.930 44.000 0.00 0.00 42.13 2.59
6527 7682 5.305644 GGATGACCCATCACAATAGTACTCT 59.694 44.000 0.00 0.00 42.13 3.24
6528 7683 5.598416 TGACCCATCACAATAGTACTCTG 57.402 43.478 0.00 0.43 0.00 3.35
6529 7684 5.023452 TGACCCATCACAATAGTACTCTGT 58.977 41.667 0.00 1.16 0.00 3.41
6530 7685 5.127194 TGACCCATCACAATAGTACTCTGTC 59.873 44.000 0.00 0.00 0.00 3.51
6531 7686 5.273208 ACCCATCACAATAGTACTCTGTCT 58.727 41.667 0.00 0.00 0.00 3.41
6532 7687 5.127845 ACCCATCACAATAGTACTCTGTCTG 59.872 44.000 0.00 4.72 0.00 3.51
6533 7688 5.046529 CCATCACAATAGTACTCTGTCTGC 58.953 45.833 0.00 0.00 0.00 4.26
6534 7689 5.394553 CCATCACAATAGTACTCTGTCTGCA 60.395 44.000 0.00 0.00 0.00 4.41
6535 7690 5.921962 TCACAATAGTACTCTGTCTGCAT 57.078 39.130 0.00 0.00 0.00 3.96
6536 7691 7.428826 CATCACAATAGTACTCTGTCTGCATA 58.571 38.462 0.00 0.00 0.00 3.14
6537 7692 6.796426 TCACAATAGTACTCTGTCTGCATAC 58.204 40.000 0.00 0.00 0.00 2.39
6538 7693 6.603599 TCACAATAGTACTCTGTCTGCATACT 59.396 38.462 0.00 1.75 0.00 2.12
6539 7694 7.773690 TCACAATAGTACTCTGTCTGCATACTA 59.226 37.037 0.00 3.94 33.94 1.82
6540 7695 8.406297 CACAATAGTACTCTGTCTGCATACTAA 58.594 37.037 0.00 0.00 33.33 2.24
6541 7696 9.137459 ACAATAGTACTCTGTCTGCATACTAAT 57.863 33.333 0.00 0.00 33.33 1.73
6606 7761 9.635520 AACGATCTTATATTAGTTTACGATGGG 57.364 33.333 0.00 0.00 0.00 4.00
6607 7762 9.017509 ACGATCTTATATTAGTTTACGATGGGA 57.982 33.333 0.00 0.00 0.00 4.37
6608 7763 9.504710 CGATCTTATATTAGTTTACGATGGGAG 57.495 37.037 0.00 0.00 0.00 4.30
6611 7766 9.139734 TCTTATATTAGTTTACGATGGGAGTGT 57.860 33.333 0.00 0.00 0.00 3.55
6612 7767 9.760077 CTTATATTAGTTTACGATGGGAGTGTT 57.240 33.333 0.00 0.00 0.00 3.32
6615 7770 6.594788 TTAGTTTACGATGGGAGTGTTAGT 57.405 37.500 0.00 0.00 0.00 2.24
6616 7771 5.479124 AGTTTACGATGGGAGTGTTAGTT 57.521 39.130 0.00 0.00 0.00 2.24
6617 7772 6.594788 AGTTTACGATGGGAGTGTTAGTTA 57.405 37.500 0.00 0.00 0.00 2.24
6618 7773 6.628185 AGTTTACGATGGGAGTGTTAGTTAG 58.372 40.000 0.00 0.00 0.00 2.34
6619 7774 6.210185 AGTTTACGATGGGAGTGTTAGTTAGT 59.790 38.462 0.00 0.00 0.00 2.24
6620 7775 7.394359 AGTTTACGATGGGAGTGTTAGTTAGTA 59.606 37.037 0.00 0.00 0.00 1.82
6621 7776 5.831702 ACGATGGGAGTGTTAGTTAGTAG 57.168 43.478 0.00 0.00 0.00 2.57
6622 7777 5.259632 ACGATGGGAGTGTTAGTTAGTAGT 58.740 41.667 0.00 0.00 0.00 2.73
6623 7778 6.418101 ACGATGGGAGTGTTAGTTAGTAGTA 58.582 40.000 0.00 0.00 0.00 1.82
6624 7779 6.886459 ACGATGGGAGTGTTAGTTAGTAGTAA 59.114 38.462 0.00 0.00 0.00 2.24
6625 7780 7.394359 ACGATGGGAGTGTTAGTTAGTAGTAAA 59.606 37.037 0.00 0.00 0.00 2.01
6626 7781 7.914346 CGATGGGAGTGTTAGTTAGTAGTAAAG 59.086 40.741 0.00 0.00 0.00 1.85
6627 7782 7.472334 TGGGAGTGTTAGTTAGTAGTAAAGG 57.528 40.000 0.00 0.00 0.00 3.11
6628 7783 6.071165 TGGGAGTGTTAGTTAGTAGTAAAGGC 60.071 42.308 0.00 0.00 0.00 4.35
6629 7784 6.071165 GGGAGTGTTAGTTAGTAGTAAAGGCA 60.071 42.308 0.00 0.00 0.00 4.75
6630 7785 7.381323 GGAGTGTTAGTTAGTAGTAAAGGCAA 58.619 38.462 0.00 0.00 0.00 4.52
6631 7786 7.330454 GGAGTGTTAGTTAGTAGTAAAGGCAAC 59.670 40.741 0.00 0.00 0.00 4.17
6632 7787 7.729116 AGTGTTAGTTAGTAGTAAAGGCAACA 58.271 34.615 0.00 0.00 41.41 3.33
6633 7788 7.871463 AGTGTTAGTTAGTAGTAAAGGCAACAG 59.129 37.037 0.00 0.00 41.41 3.16
6634 7789 7.117379 GTGTTAGTTAGTAGTAAAGGCAACAGG 59.883 40.741 0.00 0.00 41.41 4.00
6635 7790 5.820404 AGTTAGTAGTAAAGGCAACAGGT 57.180 39.130 0.00 0.00 41.41 4.00
6636 7791 5.548406 AGTTAGTAGTAAAGGCAACAGGTG 58.452 41.667 0.00 0.00 41.41 4.00
6650 7805 4.804806 GGTGCCTACCCGTCAAAA 57.195 55.556 0.00 0.00 41.36 2.44
6651 7806 3.024431 GGTGCCTACCCGTCAAAAA 57.976 52.632 0.00 0.00 41.36 1.94
6677 7832 3.349006 CAGGTGCCTGCGTCACAC 61.349 66.667 5.19 0.00 37.24 3.82
6678 7833 3.860605 AGGTGCCTGCGTCACACA 61.861 61.111 5.40 0.00 36.00 3.72
6679 7834 3.649986 GGTGCCTGCGTCACACAC 61.650 66.667 5.40 0.00 36.00 3.82
6680 7835 2.894879 GTGCCTGCGTCACACACA 60.895 61.111 0.00 0.00 34.43 3.72
6681 7836 2.894879 TGCCTGCGTCACACACAC 60.895 61.111 0.00 0.00 0.00 3.82
6682 7837 2.894879 GCCTGCGTCACACACACA 60.895 61.111 0.00 0.00 0.00 3.72
6683 7838 3.014036 CCTGCGTCACACACACAC 58.986 61.111 0.00 0.00 0.00 3.82
6684 7839 1.813337 CCTGCGTCACACACACACA 60.813 57.895 0.00 0.00 0.00 3.72
6685 7840 1.348250 CTGCGTCACACACACACAC 59.652 57.895 0.00 0.00 0.00 3.82
6686 7841 1.357991 CTGCGTCACACACACACACA 61.358 55.000 0.00 0.00 0.00 3.72
6687 7842 1.060308 GCGTCACACACACACACAC 59.940 57.895 0.00 0.00 0.00 3.82
6688 7843 1.631144 GCGTCACACACACACACACA 61.631 55.000 0.00 0.00 0.00 3.72
6689 7844 0.094558 CGTCACACACACACACACAC 59.905 55.000 0.00 0.00 0.00 3.82
6690 7845 1.152510 GTCACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
6691 7846 1.136085 GTCACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
6692 7847 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6693 7848 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6694 7849 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
6695 7850 1.535028 CACACACACACACACACACTT 59.465 47.619 0.00 0.00 0.00 3.16
6696 7851 1.535028 ACACACACACACACACACTTG 59.465 47.619 0.00 0.00 0.00 3.16
6697 7852 1.135717 CACACACACACACACACTTGG 60.136 52.381 0.00 0.00 0.00 3.61
6698 7853 1.271108 ACACACACACACACACTTGGA 60.271 47.619 0.00 0.00 0.00 3.53
6699 7854 1.130373 CACACACACACACACTTGGAC 59.870 52.381 0.00 0.00 0.00 4.02
6700 7855 0.373370 CACACACACACACTTGGACG 59.627 55.000 0.00 0.00 0.00 4.79
6701 7856 0.248012 ACACACACACACTTGGACGA 59.752 50.000 0.00 0.00 0.00 4.20
6702 7857 0.650512 CACACACACACTTGGACGAC 59.349 55.000 0.00 0.00 0.00 4.34
6703 7858 0.804544 ACACACACACTTGGACGACG 60.805 55.000 0.00 0.00 0.00 5.12
6704 7859 0.526739 CACACACACTTGGACGACGA 60.527 55.000 0.00 0.00 0.00 4.20
6705 7860 0.173935 ACACACACTTGGACGACGAA 59.826 50.000 0.00 0.00 0.00 3.85
6706 7861 1.282817 CACACACTTGGACGACGAAA 58.717 50.000 0.00 0.00 0.00 3.46
6707 7862 1.864711 CACACACTTGGACGACGAAAT 59.135 47.619 0.00 0.00 0.00 2.17
6708 7863 1.864711 ACACACTTGGACGACGAAATG 59.135 47.619 0.00 0.00 0.00 2.32
6709 7864 2.131972 CACACTTGGACGACGAAATGA 58.868 47.619 0.00 0.00 0.00 2.57
6710 7865 2.096909 CACACTTGGACGACGAAATGAC 60.097 50.000 0.00 0.00 0.00 3.06
6711 7866 2.131972 CACTTGGACGACGAAATGACA 58.868 47.619 0.00 0.00 0.00 3.58
6712 7867 2.155732 CACTTGGACGACGAAATGACAG 59.844 50.000 0.00 0.00 0.00 3.51
6713 7868 1.126846 CTTGGACGACGAAATGACAGC 59.873 52.381 0.00 0.00 0.00 4.40
6714 7869 0.317160 TGGACGACGAAATGACAGCT 59.683 50.000 0.00 0.00 0.00 4.24
6715 7870 0.716108 GGACGACGAAATGACAGCTG 59.284 55.000 13.48 13.48 0.00 4.24
6716 7871 1.668919 GGACGACGAAATGACAGCTGA 60.669 52.381 23.35 0.00 0.00 4.26
6717 7872 2.263077 GACGACGAAATGACAGCTGAT 58.737 47.619 23.35 4.35 0.00 2.90
6718 7873 1.995484 ACGACGAAATGACAGCTGATG 59.005 47.619 23.35 4.00 0.00 3.07
6719 7874 2.262211 CGACGAAATGACAGCTGATGA 58.738 47.619 23.35 3.39 0.00 2.92
6720 7875 2.862536 CGACGAAATGACAGCTGATGAT 59.137 45.455 23.35 5.87 0.00 2.45
6721 7876 3.060674 CGACGAAATGACAGCTGATGATC 60.061 47.826 23.35 8.02 0.00 2.92
6722 7877 3.865446 ACGAAATGACAGCTGATGATCA 58.135 40.909 23.35 14.19 0.00 2.92
6723 7878 4.256110 ACGAAATGACAGCTGATGATCAA 58.744 39.130 23.35 0.00 0.00 2.57
6724 7879 4.696877 ACGAAATGACAGCTGATGATCAAA 59.303 37.500 23.35 0.00 0.00 2.69
6725 7880 5.356190 ACGAAATGACAGCTGATGATCAAAT 59.644 36.000 23.35 6.68 0.00 2.32
6726 7881 5.681543 CGAAATGACAGCTGATGATCAAATG 59.318 40.000 23.35 0.88 0.00 2.32
6727 7882 6.457799 CGAAATGACAGCTGATGATCAAATGA 60.458 38.462 23.35 0.00 0.00 2.57
6728 7883 6.769134 AATGACAGCTGATGATCAAATGAA 57.231 33.333 23.35 2.76 0.00 2.57
6729 7884 6.769134 ATGACAGCTGATGATCAAATGAAA 57.231 33.333 23.35 2.49 0.00 2.69
6730 7885 5.946298 TGACAGCTGATGATCAAATGAAAC 58.054 37.500 23.35 5.45 0.00 2.78
6731 7886 5.708697 TGACAGCTGATGATCAAATGAAACT 59.291 36.000 23.35 0.00 0.00 2.66
6732 7887 6.128090 TGACAGCTGATGATCAAATGAAACTC 60.128 38.462 23.35 1.12 0.00 3.01
6733 7888 5.944599 ACAGCTGATGATCAAATGAAACTCT 59.055 36.000 23.35 0.00 0.00 3.24
6734 7889 7.108194 ACAGCTGATGATCAAATGAAACTCTA 58.892 34.615 23.35 0.00 0.00 2.43
6735 7890 7.609146 ACAGCTGATGATCAAATGAAACTCTAA 59.391 33.333 23.35 0.00 0.00 2.10
6736 7891 8.622157 CAGCTGATGATCAAATGAAACTCTAAT 58.378 33.333 8.42 0.00 0.00 1.73
6737 7892 9.842775 AGCTGATGATCAAATGAAACTCTAATA 57.157 29.630 0.00 0.00 0.00 0.98
6750 7905 8.862325 TGAAACTCTAATATTTTTCCTGAGCA 57.138 30.769 0.00 0.00 0.00 4.26
6751 7906 8.950210 TGAAACTCTAATATTTTTCCTGAGCAG 58.050 33.333 0.00 0.00 0.00 4.24
6781 7936 6.952773 TTTTTGACAATGCTACAACTAGGT 57.047 33.333 0.00 0.00 0.00 3.08
6783 7938 7.429636 TTTTGACAATGCTACAACTAGGTAC 57.570 36.000 0.00 0.00 0.00 3.34
6784 7939 4.740268 TGACAATGCTACAACTAGGTACG 58.260 43.478 0.00 0.00 0.00 3.67
6785 7940 4.219070 TGACAATGCTACAACTAGGTACGT 59.781 41.667 0.00 0.00 0.00 3.57
6786 7941 5.415389 TGACAATGCTACAACTAGGTACGTA 59.585 40.000 0.00 0.00 0.00 3.57
6787 7942 5.644644 ACAATGCTACAACTAGGTACGTAC 58.355 41.667 17.56 17.56 0.00 3.67
6788 7943 5.416952 ACAATGCTACAACTAGGTACGTACT 59.583 40.000 24.07 13.10 0.00 2.73
6789 7944 6.071728 ACAATGCTACAACTAGGTACGTACTT 60.072 38.462 24.07 19.70 0.00 2.24
6790 7945 5.551760 TGCTACAACTAGGTACGTACTTC 57.448 43.478 24.07 9.57 0.00 3.01
6791 7946 5.003160 TGCTACAACTAGGTACGTACTTCA 58.997 41.667 24.07 6.59 0.00 3.02
6792 7947 5.649395 TGCTACAACTAGGTACGTACTTCAT 59.351 40.000 24.07 11.14 0.00 2.57
6793 7948 6.183360 TGCTACAACTAGGTACGTACTTCATC 60.183 42.308 24.07 8.13 0.00 2.92
6794 7949 6.038050 GCTACAACTAGGTACGTACTTCATCT 59.962 42.308 24.07 14.73 0.00 2.90
6795 7950 7.225538 GCTACAACTAGGTACGTACTTCATCTA 59.774 40.741 24.07 15.04 0.00 1.98
6796 7951 9.270640 CTACAACTAGGTACGTACTTCATCTAT 57.729 37.037 24.07 7.89 0.00 1.98
6798 7953 9.270640 ACAACTAGGTACGTACTTCATCTATAG 57.729 37.037 24.07 11.91 0.00 1.31
6799 7954 9.486497 CAACTAGGTACGTACTTCATCTATAGA 57.514 37.037 24.07 4.57 0.00 1.98
6800 7955 9.487790 AACTAGGTACGTACTTCATCTATAGAC 57.512 37.037 24.07 3.91 0.00 2.59
6801 7956 8.869109 ACTAGGTACGTACTTCATCTATAGACT 58.131 37.037 24.07 10.79 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 230 3.557595 GCTAGTGATTAGTCATGGTGTGC 59.442 47.826 0.00 0.00 36.60 4.57
340 422 6.177310 TCTCCTGTATGTCTCTAGGTCTAC 57.823 45.833 0.00 0.00 0.00 2.59
384 466 3.906879 GTTGTGGCCGCCGGTTTT 61.907 61.111 15.15 0.00 0.00 2.43
466 548 6.892658 TCTTGCAAGCAAACCTCTAATTTA 57.107 33.333 21.99 0.00 35.33 1.40
518 602 0.170561 GCTACTCGTCACATCACCGT 59.829 55.000 0.00 0.00 0.00 4.83
544 628 3.730761 CAACGCCAGCACTGCCTC 61.731 66.667 0.00 0.00 0.00 4.70
547 631 4.332637 CACCAACGCCAGCACTGC 62.333 66.667 0.00 0.00 0.00 4.40
548 632 3.663176 CCACCAACGCCAGCACTG 61.663 66.667 0.00 0.00 0.00 3.66
549 633 3.196207 ATCCACCAACGCCAGCACT 62.196 57.895 0.00 0.00 0.00 4.40
651 751 1.374252 CCTCCGTCGACCAAGGTTG 60.374 63.158 18.45 0.00 0.00 3.77
723 828 1.344953 CCGGATCATCAACCCCTCCA 61.345 60.000 0.00 0.00 0.00 3.86
765 878 2.041922 TCTGCTAGCCATCCCGGT 60.042 61.111 13.29 0.00 36.97 5.28
766 879 1.814772 CTCTCTGCTAGCCATCCCGG 61.815 65.000 13.29 0.00 38.11 5.73
767 880 0.825425 TCTCTCTGCTAGCCATCCCG 60.825 60.000 13.29 0.00 0.00 5.14
769 882 3.401182 CATTTCTCTCTGCTAGCCATCC 58.599 50.000 13.29 0.00 0.00 3.51
770 883 2.807392 GCATTTCTCTCTGCTAGCCATC 59.193 50.000 13.29 0.00 35.49 3.51
772 885 1.472201 CGCATTTCTCTCTGCTAGCCA 60.472 52.381 13.29 0.00 36.23 4.75
773 886 1.216122 CGCATTTCTCTCTGCTAGCC 58.784 55.000 13.29 0.00 36.23 3.93
774 887 1.933247 ACGCATTTCTCTCTGCTAGC 58.067 50.000 8.10 8.10 36.23 3.42
775 888 4.935885 AAAACGCATTTCTCTCTGCTAG 57.064 40.909 0.00 0.00 36.23 3.42
776 889 4.515191 ACAAAAACGCATTTCTCTCTGCTA 59.485 37.500 0.00 0.00 36.23 3.49
777 890 3.316308 ACAAAAACGCATTTCTCTCTGCT 59.684 39.130 0.00 0.00 36.23 4.24
778 891 3.423206 CACAAAAACGCATTTCTCTCTGC 59.577 43.478 0.00 0.00 35.02 4.26
779 892 3.423206 GCACAAAAACGCATTTCTCTCTG 59.577 43.478 0.00 0.00 0.00 3.35
780 893 3.316308 AGCACAAAAACGCATTTCTCTCT 59.684 39.130 0.00 0.00 0.00 3.10
815 928 1.896220 TGCCAAACGCATTTCTCTCT 58.104 45.000 0.00 0.00 44.64 3.10
1047 1162 2.759973 CCCTGGTAGCGGCAGAGA 60.760 66.667 1.45 0.00 0.00 3.10
1392 1507 4.773149 AGAGAGAAGGAAGTGTAACGGAAT 59.227 41.667 0.00 0.00 45.86 3.01
1405 1520 2.425312 GAGAATCGCACAGAGAGAAGGA 59.575 50.000 0.00 0.00 0.00 3.36
1469 1585 0.604780 AACGAGCAGCAGCAGTGAAT 60.605 50.000 3.17 0.00 45.49 2.57
1471 1587 1.227645 AAACGAGCAGCAGCAGTGA 60.228 52.632 3.17 0.00 45.49 3.41
1485 1601 0.802994 ATGGCAATGCATCGCAAACG 60.803 50.000 12.49 0.00 43.62 3.60
1535 1651 2.159531 CGTGCAATTCATGACCGTCAAT 60.160 45.455 5.07 0.00 33.49 2.57
1665 1781 2.126888 GCGCACACATGGTTTCCG 60.127 61.111 0.30 0.00 0.00 4.30
1682 1798 0.859788 AAAGAAAACACACGCACGCG 60.860 50.000 10.36 10.36 46.03 6.01
1688 1858 3.311322 TCTGGTGCTAAAGAAAACACACG 59.689 43.478 0.00 0.00 34.69 4.49
1719 1889 6.615088 TCTGAAGCAATATCAAAGCAAAGTC 58.385 36.000 0.00 0.00 0.00 3.01
1824 1994 7.609146 TCAAGCAGTGAAGATGTTATCAAATCT 59.391 33.333 0.00 0.00 34.58 2.40
1992 2163 5.654497 CCTAAAATTGAGGAAACATGGCTC 58.346 41.667 0.00 0.00 35.99 4.70
1993 2164 4.081476 GCCTAAAATTGAGGAAACATGGCT 60.081 41.667 0.00 0.00 35.99 4.75
2024 2195 7.765819 TGAACTGTCAACCTAATCACATGATAG 59.234 37.037 0.00 0.00 35.94 2.08
2127 2314 5.535753 ACAATATCATCTGACATGACCGA 57.464 39.130 0.00 0.00 0.00 4.69
2272 2459 6.016360 TGCCAAATTTGAAGAAATTCGAGAGA 60.016 34.615 19.86 0.00 40.27 3.10
2334 3346 5.316167 AGAGAAACCACAATAGCACATCAA 58.684 37.500 0.00 0.00 0.00 2.57
2404 3416 2.158900 AGCCATAAATGACCGGTCAGAG 60.159 50.000 37.98 24.74 43.61 3.35
2766 3778 9.953697 CATTTTTGGGATTATGGCATAATTTTG 57.046 29.630 28.26 15.22 35.68 2.44
2837 3849 4.099573 CCCACTAGGATACGAATTCAGTGT 59.900 45.833 14.94 8.53 46.39 3.55
3104 4116 2.964925 GTGTGTTGCTCGACCGCA 60.965 61.111 0.00 0.00 38.31 5.69
3159 4171 5.717654 AGGGTTTTACAGTTTTGTTCAGGAA 59.282 36.000 0.00 0.00 38.76 3.36
3203 4215 0.250901 TGCTTGAAGCTTCTGTCCCC 60.251 55.000 26.09 9.84 42.97 4.81
3231 4243 0.252479 AGATGCAGCTGGGTTCTCAG 59.748 55.000 17.12 0.00 37.79 3.35
3336 4348 3.295093 TCAACTTCCTTGTGATTGGCAA 58.705 40.909 0.68 0.68 0.00 4.52
3343 4355 1.547675 GGGGCATCAACTTCCTTGTGA 60.548 52.381 0.00 0.00 0.00 3.58
3573 4585 4.849813 TCATGACATGGAGAAACCTCAT 57.150 40.909 15.37 0.00 39.86 2.90
3767 4779 5.534207 TCTGCATGTTTTTCAGAATGGTT 57.466 34.783 0.00 0.00 34.30 3.67
3843 4855 2.419297 GGAACAGATGCAGGTCCAGTAG 60.419 54.545 3.70 0.00 0.00 2.57
4360 5372 9.139734 AGATATAAATCTGTTGGCAATGAATGT 57.860 29.630 1.92 0.00 41.08 2.71
4411 5423 6.712095 CCTCATGCAAGCAAACCTATCTATAA 59.288 38.462 0.00 0.00 0.00 0.98
4436 5448 7.436673 CAGAACTATGTTATCAGGCTACAAGAC 59.563 40.741 0.00 0.00 0.00 3.01
4794 5807 7.648142 TGAAAGTAACAAATGAACCAGATGAC 58.352 34.615 0.00 0.00 0.00 3.06
4923 5936 3.317711 TGTTGTGCTAGAATTTGGTGGTG 59.682 43.478 0.00 0.00 0.00 4.17
4924 5937 3.561143 TGTTGTGCTAGAATTTGGTGGT 58.439 40.909 0.00 0.00 0.00 4.16
4925 5938 4.487948 CATGTTGTGCTAGAATTTGGTGG 58.512 43.478 0.00 0.00 0.00 4.61
4939 5952 1.031235 TTGGTGGAGTGCATGTTGTG 58.969 50.000 0.00 0.00 0.00 3.33
4940 5953 1.774110 TTTGGTGGAGTGCATGTTGT 58.226 45.000 0.00 0.00 0.00 3.32
4941 5954 3.006110 AGAATTTGGTGGAGTGCATGTTG 59.994 43.478 0.00 0.00 0.00 3.33
4942 5955 3.233507 AGAATTTGGTGGAGTGCATGTT 58.766 40.909 0.00 0.00 0.00 2.71
4943 5956 2.880443 AGAATTTGGTGGAGTGCATGT 58.120 42.857 0.00 0.00 0.00 3.21
4944 5957 3.181493 GCTAGAATTTGGTGGAGTGCATG 60.181 47.826 0.00 0.00 0.00 4.06
4945 5958 3.019564 GCTAGAATTTGGTGGAGTGCAT 58.980 45.455 0.00 0.00 0.00 3.96
4946 5959 2.224744 TGCTAGAATTTGGTGGAGTGCA 60.225 45.455 0.00 0.00 0.00 4.57
4947 5960 2.162408 GTGCTAGAATTTGGTGGAGTGC 59.838 50.000 0.00 0.00 0.00 4.40
4948 5961 3.411446 TGTGCTAGAATTTGGTGGAGTG 58.589 45.455 0.00 0.00 0.00 3.51
4949 5962 3.788227 TGTGCTAGAATTTGGTGGAGT 57.212 42.857 0.00 0.00 0.00 3.85
5098 6111 1.893786 CTCCCTGTTCGGAGTCCTG 59.106 63.158 7.77 0.92 43.94 3.86
5221 6234 0.601558 TCTGGTGGTCAAGCTCGTAC 59.398 55.000 0.00 0.00 0.00 3.67
5598 6611 2.187958 TGACCCCGTCAATCTCTTGAT 58.812 47.619 0.00 0.00 43.08 2.57
5718 6731 2.644299 TCCTTGCTTTCATCCTCTTCCA 59.356 45.455 0.00 0.00 0.00 3.53
5823 6836 1.609072 AGAGAAAAGGAAAACAGGCGC 59.391 47.619 0.00 0.00 0.00 6.53
5886 6899 2.021068 GACGAGGAGCATGCCAGCTA 62.021 60.000 15.66 0.00 46.75 3.32
5905 6918 2.117137 CTGACGACGAACATAATCGGG 58.883 52.381 0.00 0.00 46.82 5.14
5918 6931 2.266554 CTGATTTGAGGAGCTGACGAC 58.733 52.381 0.00 0.00 0.00 4.34
6028 7042 5.573337 AAAGACCATGCTAAATGAAGCTC 57.427 39.130 0.00 0.00 43.19 4.09
6046 7060 5.067283 GTGAACCCTCAGCAAACTAAAAAGA 59.933 40.000 0.00 0.00 30.14 2.52
6072 7086 5.619981 GCAGTGCTCCAGTTTATTCGAAAAT 60.620 40.000 8.18 0.00 0.00 1.82
6073 7087 4.320202 GCAGTGCTCCAGTTTATTCGAAAA 60.320 41.667 8.18 0.00 0.00 2.29
6075 7089 2.742053 GCAGTGCTCCAGTTTATTCGAA 59.258 45.455 8.18 0.00 0.00 3.71
6126 7147 5.347907 CCCTCCGTATCAAAATATAAGACGC 59.652 44.000 0.00 0.00 0.00 5.19
6132 7153 9.986157 ATAGTACTCCCTCCGTATCAAAATATA 57.014 33.333 0.00 0.00 0.00 0.86
6133 7154 8.896722 ATAGTACTCCCTCCGTATCAAAATAT 57.103 34.615 0.00 0.00 0.00 1.28
6135 7156 8.750298 CATATAGTACTCCCTCCGTATCAAAAT 58.250 37.037 0.00 0.00 0.00 1.82
6136 7157 7.946219 TCATATAGTACTCCCTCCGTATCAAAA 59.054 37.037 0.00 0.00 0.00 2.44
6137 7158 7.464273 TCATATAGTACTCCCTCCGTATCAAA 58.536 38.462 0.00 0.00 0.00 2.69
6140 7161 9.275398 CTTATCATATAGTACTCCCTCCGTATC 57.725 40.741 0.00 0.00 0.00 2.24
6141 7162 8.219178 CCTTATCATATAGTACTCCCTCCGTAT 58.781 40.741 0.00 0.00 0.00 3.06
6142 7163 7.183475 ACCTTATCATATAGTACTCCCTCCGTA 59.817 40.741 0.00 0.00 0.00 4.02
6143 7164 6.011805 ACCTTATCATATAGTACTCCCTCCGT 60.012 42.308 0.00 0.00 0.00 4.69
6144 7165 6.424883 ACCTTATCATATAGTACTCCCTCCG 58.575 44.000 0.00 0.00 0.00 4.63
6186 7339 8.405531 CAACTGGAAACAACTATTTTTCTCTGA 58.594 33.333 0.00 0.00 42.06 3.27
6375 7529 1.752694 ACACGCACCAAACCAAGCT 60.753 52.632 0.00 0.00 0.00 3.74
6376 7530 1.588667 CACACGCACCAAACCAAGC 60.589 57.895 0.00 0.00 0.00 4.01
6377 7531 0.453793 TTCACACGCACCAAACCAAG 59.546 50.000 0.00 0.00 0.00 3.61
6406 7561 1.621814 ACTTCTACGGCACAAGGCTAA 59.378 47.619 0.00 0.00 44.01 3.09
6407 7562 1.263356 ACTTCTACGGCACAAGGCTA 58.737 50.000 0.00 0.00 44.01 3.93
6408 7563 0.396811 AACTTCTACGGCACAAGGCT 59.603 50.000 0.00 0.00 44.01 4.58
6409 7564 0.796927 GAACTTCTACGGCACAAGGC 59.203 55.000 0.00 0.00 43.74 4.35
6410 7565 2.457366 AGAACTTCTACGGCACAAGG 57.543 50.000 0.00 0.00 0.00 3.61
6411 7566 3.607078 GCAAAGAACTTCTACGGCACAAG 60.607 47.826 0.00 0.00 0.00 3.16
6412 7567 2.289547 GCAAAGAACTTCTACGGCACAA 59.710 45.455 0.00 0.00 0.00 3.33
6413 7568 1.871039 GCAAAGAACTTCTACGGCACA 59.129 47.619 0.00 0.00 0.00 4.57
6414 7569 1.136336 CGCAAAGAACTTCTACGGCAC 60.136 52.381 8.91 0.00 0.00 5.01
6415 7570 1.144969 CGCAAAGAACTTCTACGGCA 58.855 50.000 8.91 0.00 0.00 5.69
6416 7571 0.179222 GCGCAAAGAACTTCTACGGC 60.179 55.000 0.30 5.51 0.00 5.68
6417 7572 0.442699 GGCGCAAAGAACTTCTACGG 59.557 55.000 10.83 0.00 0.00 4.02
6418 7573 0.442699 GGGCGCAAAGAACTTCTACG 59.557 55.000 10.83 0.00 0.00 3.51
6419 7574 1.197036 GTGGGCGCAAAGAACTTCTAC 59.803 52.381 10.83 0.00 0.00 2.59
6420 7575 1.519408 GTGGGCGCAAAGAACTTCTA 58.481 50.000 10.83 0.00 0.00 2.10
6421 7576 1.172812 GGTGGGCGCAAAGAACTTCT 61.173 55.000 10.83 0.00 0.00 2.85
6422 7577 1.172812 AGGTGGGCGCAAAGAACTTC 61.173 55.000 10.83 0.00 0.00 3.01
6423 7578 0.755327 AAGGTGGGCGCAAAGAACTT 60.755 50.000 10.83 0.08 0.00 2.66
6424 7579 0.755327 AAAGGTGGGCGCAAAGAACT 60.755 50.000 10.83 0.00 0.00 3.01
6425 7580 0.597377 CAAAGGTGGGCGCAAAGAAC 60.597 55.000 10.83 0.00 0.00 3.01
6426 7581 1.040339 ACAAAGGTGGGCGCAAAGAA 61.040 50.000 10.83 0.00 0.00 2.52
6427 7582 1.040339 AACAAAGGTGGGCGCAAAGA 61.040 50.000 10.83 0.00 0.00 2.52
6428 7583 0.671251 TAACAAAGGTGGGCGCAAAG 59.329 50.000 10.83 0.00 0.00 2.77
6429 7584 0.386113 GTAACAAAGGTGGGCGCAAA 59.614 50.000 10.83 0.00 0.00 3.68
6430 7585 0.466555 AGTAACAAAGGTGGGCGCAA 60.467 50.000 10.83 0.00 0.00 4.85
6431 7586 0.397187 TAGTAACAAAGGTGGGCGCA 59.603 50.000 10.83 0.00 0.00 6.09
6432 7587 1.400494 CATAGTAACAAAGGTGGGCGC 59.600 52.381 0.00 0.00 0.00 6.53
6433 7588 1.400494 GCATAGTAACAAAGGTGGGCG 59.600 52.381 0.00 0.00 0.00 6.13
6434 7589 1.749063 GGCATAGTAACAAAGGTGGGC 59.251 52.381 0.00 0.00 0.00 5.36
6435 7590 2.375146 GGGCATAGTAACAAAGGTGGG 58.625 52.381 0.00 0.00 0.00 4.61
6436 7591 2.014128 CGGGCATAGTAACAAAGGTGG 58.986 52.381 0.00 0.00 0.00 4.61
6437 7592 2.418628 CACGGGCATAGTAACAAAGGTG 59.581 50.000 0.00 0.00 0.00 4.00
6438 7593 2.617021 CCACGGGCATAGTAACAAAGGT 60.617 50.000 0.00 0.00 0.00 3.50
6439 7594 2.014128 CCACGGGCATAGTAACAAAGG 58.986 52.381 0.00 0.00 0.00 3.11
6440 7595 2.676342 GTCCACGGGCATAGTAACAAAG 59.324 50.000 0.00 0.00 0.00 2.77
6441 7596 2.616001 GGTCCACGGGCATAGTAACAAA 60.616 50.000 0.00 0.00 0.00 2.83
6442 7597 1.065998 GGTCCACGGGCATAGTAACAA 60.066 52.381 0.00 0.00 0.00 2.83
6443 7598 0.538118 GGTCCACGGGCATAGTAACA 59.462 55.000 0.00 0.00 0.00 2.41
6444 7599 0.538118 TGGTCCACGGGCATAGTAAC 59.462 55.000 0.00 0.00 0.00 2.50
6445 7600 1.414919 GATGGTCCACGGGCATAGTAA 59.585 52.381 0.00 0.00 0.00 2.24
6446 7601 1.045407 GATGGTCCACGGGCATAGTA 58.955 55.000 0.00 0.00 0.00 1.82
6447 7602 0.980754 TGATGGTCCACGGGCATAGT 60.981 55.000 0.00 0.00 0.00 2.12
6448 7603 0.250038 CTGATGGTCCACGGGCATAG 60.250 60.000 0.00 0.00 0.00 2.23
6449 7604 0.689412 TCTGATGGTCCACGGGCATA 60.689 55.000 0.00 0.00 0.00 3.14
6450 7605 1.976132 CTCTGATGGTCCACGGGCAT 61.976 60.000 0.00 0.00 0.00 4.40
6451 7606 2.606213 TCTGATGGTCCACGGGCA 60.606 61.111 0.00 0.00 0.00 5.36
6452 7607 1.690219 ATCTCTGATGGTCCACGGGC 61.690 60.000 0.00 0.00 0.00 6.13
6453 7608 0.105593 CATCTCTGATGGTCCACGGG 59.894 60.000 0.00 0.00 0.00 5.28
6454 7609 0.531532 GCATCTCTGATGGTCCACGG 60.532 60.000 9.24 0.00 0.00 4.94
6455 7610 0.463204 AGCATCTCTGATGGTCCACG 59.537 55.000 6.45 0.00 0.00 4.94
6456 7611 2.237393 GAGCATCTCTGATGGTCCAC 57.763 55.000 21.90 5.26 39.77 4.02
6469 7624 2.681848 CCACAGATCCAACAAGAGCATC 59.318 50.000 0.00 0.00 0.00 3.91
6470 7625 2.306805 TCCACAGATCCAACAAGAGCAT 59.693 45.455 0.00 0.00 0.00 3.79
6471 7626 1.699083 TCCACAGATCCAACAAGAGCA 59.301 47.619 0.00 0.00 0.00 4.26
6472 7627 2.479566 TCCACAGATCCAACAAGAGC 57.520 50.000 0.00 0.00 0.00 4.09
6473 7628 3.054875 TCCATCCACAGATCCAACAAGAG 60.055 47.826 0.00 0.00 0.00 2.85
6474 7629 2.912295 TCCATCCACAGATCCAACAAGA 59.088 45.455 0.00 0.00 0.00 3.02
6475 7630 3.012518 GTCCATCCACAGATCCAACAAG 58.987 50.000 0.00 0.00 0.00 3.16
6476 7631 2.615240 CGTCCATCCACAGATCCAACAA 60.615 50.000 0.00 0.00 0.00 2.83
6477 7632 1.066215 CGTCCATCCACAGATCCAACA 60.066 52.381 0.00 0.00 0.00 3.33
6478 7633 1.656652 CGTCCATCCACAGATCCAAC 58.343 55.000 0.00 0.00 0.00 3.77
6479 7634 0.541392 CCGTCCATCCACAGATCCAA 59.459 55.000 0.00 0.00 0.00 3.53
6480 7635 0.325203 TCCGTCCATCCACAGATCCA 60.325 55.000 0.00 0.00 0.00 3.41
6481 7636 0.105039 GTCCGTCCATCCACAGATCC 59.895 60.000 0.00 0.00 0.00 3.36
6482 7637 1.115467 AGTCCGTCCATCCACAGATC 58.885 55.000 0.00 0.00 0.00 2.75
6483 7638 1.208052 CAAGTCCGTCCATCCACAGAT 59.792 52.381 0.00 0.00 0.00 2.90
6484 7639 0.608130 CAAGTCCGTCCATCCACAGA 59.392 55.000 0.00 0.00 0.00 3.41
6485 7640 0.391661 CCAAGTCCGTCCATCCACAG 60.392 60.000 0.00 0.00 0.00 3.66
6486 7641 0.834261 TCCAAGTCCGTCCATCCACA 60.834 55.000 0.00 0.00 0.00 4.17
6487 7642 0.541863 ATCCAAGTCCGTCCATCCAC 59.458 55.000 0.00 0.00 0.00 4.02
6488 7643 0.541392 CATCCAAGTCCGTCCATCCA 59.459 55.000 0.00 0.00 0.00 3.41
6489 7644 0.830648 TCATCCAAGTCCGTCCATCC 59.169 55.000 0.00 0.00 0.00 3.51
6490 7645 1.473434 GGTCATCCAAGTCCGTCCATC 60.473 57.143 0.00 0.00 0.00 3.51
6491 7646 0.541863 GGTCATCCAAGTCCGTCCAT 59.458 55.000 0.00 0.00 0.00 3.41
6492 7647 1.550130 GGGTCATCCAAGTCCGTCCA 61.550 60.000 0.00 0.00 35.00 4.02
6493 7648 1.221021 GGGTCATCCAAGTCCGTCC 59.779 63.158 0.00 0.00 35.00 4.79
6494 7649 1.980052 TGGGTCATCCAAGTCCGTC 59.020 57.895 0.00 0.00 43.84 4.79
6495 7650 4.225860 TGGGTCATCCAAGTCCGT 57.774 55.556 0.00 0.00 43.84 4.69
6503 7658 5.305644 AGAGTACTATTGTGATGGGTCATCC 59.694 44.000 0.00 0.00 39.87 3.51
6504 7659 6.183360 ACAGAGTACTATTGTGATGGGTCATC 60.183 42.308 10.75 1.28 40.88 2.92
6505 7660 5.663106 ACAGAGTACTATTGTGATGGGTCAT 59.337 40.000 10.75 0.00 36.60 3.06
6506 7661 5.023452 ACAGAGTACTATTGTGATGGGTCA 58.977 41.667 10.75 0.00 0.00 4.02
6507 7662 5.361285 AGACAGAGTACTATTGTGATGGGTC 59.639 44.000 15.16 5.07 0.00 4.46
6508 7663 5.127845 CAGACAGAGTACTATTGTGATGGGT 59.872 44.000 15.16 0.00 0.00 4.51
6509 7664 5.595885 CAGACAGAGTACTATTGTGATGGG 58.404 45.833 15.16 0.00 0.00 4.00
6510 7665 5.046529 GCAGACAGAGTACTATTGTGATGG 58.953 45.833 15.16 5.37 0.00 3.51
6511 7666 5.654497 TGCAGACAGAGTACTATTGTGATG 58.346 41.667 15.16 13.78 0.00 3.07
6512 7667 5.921962 TGCAGACAGAGTACTATTGTGAT 57.078 39.130 15.16 3.74 0.00 3.06
6513 7668 5.921962 ATGCAGACAGAGTACTATTGTGA 57.078 39.130 15.16 0.70 0.00 3.58
6514 7669 6.800543 AGTATGCAGACAGAGTACTATTGTG 58.199 40.000 14.90 5.16 0.00 3.33
6515 7670 8.521170 TTAGTATGCAGACAGAGTACTATTGT 57.479 34.615 14.90 11.23 30.52 2.71
6580 7735 9.635520 CCCATCGTAAACTAATATAAGATCGTT 57.364 33.333 0.00 0.00 0.00 3.85
6581 7736 9.017509 TCCCATCGTAAACTAATATAAGATCGT 57.982 33.333 0.00 0.00 0.00 3.73
6582 7737 9.504710 CTCCCATCGTAAACTAATATAAGATCG 57.495 37.037 0.00 0.00 0.00 3.69
6585 7740 9.139734 ACACTCCCATCGTAAACTAATATAAGA 57.860 33.333 0.00 0.00 0.00 2.10
6586 7741 9.760077 AACACTCCCATCGTAAACTAATATAAG 57.240 33.333 0.00 0.00 0.00 1.73
6589 7744 8.921205 ACTAACACTCCCATCGTAAACTAATAT 58.079 33.333 0.00 0.00 0.00 1.28
6590 7745 8.297470 ACTAACACTCCCATCGTAAACTAATA 57.703 34.615 0.00 0.00 0.00 0.98
6591 7746 7.179076 ACTAACACTCCCATCGTAAACTAAT 57.821 36.000 0.00 0.00 0.00 1.73
6592 7747 6.594788 ACTAACACTCCCATCGTAAACTAA 57.405 37.500 0.00 0.00 0.00 2.24
6593 7748 6.594788 AACTAACACTCCCATCGTAAACTA 57.405 37.500 0.00 0.00 0.00 2.24
6594 7749 5.479124 AACTAACACTCCCATCGTAAACT 57.521 39.130 0.00 0.00 0.00 2.66
6595 7750 6.393171 ACTAACTAACACTCCCATCGTAAAC 58.607 40.000 0.00 0.00 0.00 2.01
6596 7751 6.594788 ACTAACTAACACTCCCATCGTAAA 57.405 37.500 0.00 0.00 0.00 2.01
6597 7752 6.886459 ACTACTAACTAACACTCCCATCGTAA 59.114 38.462 0.00 0.00 0.00 3.18
6598 7753 6.418101 ACTACTAACTAACACTCCCATCGTA 58.582 40.000 0.00 0.00 0.00 3.43
6599 7754 5.259632 ACTACTAACTAACACTCCCATCGT 58.740 41.667 0.00 0.00 0.00 3.73
6600 7755 5.831702 ACTACTAACTAACACTCCCATCG 57.168 43.478 0.00 0.00 0.00 3.84
6601 7756 8.196103 CCTTTACTACTAACTAACACTCCCATC 58.804 40.741 0.00 0.00 0.00 3.51
6602 7757 7.364497 GCCTTTACTACTAACTAACACTCCCAT 60.364 40.741 0.00 0.00 0.00 4.00
6603 7758 6.071165 GCCTTTACTACTAACTAACACTCCCA 60.071 42.308 0.00 0.00 0.00 4.37
6604 7759 6.071165 TGCCTTTACTACTAACTAACACTCCC 60.071 42.308 0.00 0.00 0.00 4.30
6605 7760 6.928520 TGCCTTTACTACTAACTAACACTCC 58.071 40.000 0.00 0.00 0.00 3.85
6606 7761 7.869429 TGTTGCCTTTACTACTAACTAACACTC 59.131 37.037 0.00 0.00 0.00 3.51
6607 7762 7.729116 TGTTGCCTTTACTACTAACTAACACT 58.271 34.615 0.00 0.00 0.00 3.55
6608 7763 7.117379 CCTGTTGCCTTTACTACTAACTAACAC 59.883 40.741 0.00 0.00 0.00 3.32
6609 7764 7.156673 CCTGTTGCCTTTACTACTAACTAACA 58.843 38.462 0.00 0.00 0.00 2.41
6610 7765 7.117379 CACCTGTTGCCTTTACTACTAACTAAC 59.883 40.741 0.00 0.00 0.00 2.34
6611 7766 7.156673 CACCTGTTGCCTTTACTACTAACTAA 58.843 38.462 0.00 0.00 0.00 2.24
6612 7767 6.694447 CACCTGTTGCCTTTACTACTAACTA 58.306 40.000 0.00 0.00 0.00 2.24
6613 7768 5.548406 CACCTGTTGCCTTTACTACTAACT 58.452 41.667 0.00 0.00 0.00 2.24
6614 7769 4.153655 GCACCTGTTGCCTTTACTACTAAC 59.846 45.833 0.00 0.00 46.63 2.34
6615 7770 4.320870 GCACCTGTTGCCTTTACTACTAA 58.679 43.478 0.00 0.00 46.63 2.24
6616 7771 3.934068 GCACCTGTTGCCTTTACTACTA 58.066 45.455 0.00 0.00 46.63 1.82
6617 7772 2.779506 GCACCTGTTGCCTTTACTACT 58.220 47.619 0.00 0.00 46.63 2.57
6632 7787 0.475044 TTTTTGACGGGTAGGCACCT 59.525 50.000 0.00 0.00 45.04 4.00
6633 7788 3.024431 TTTTTGACGGGTAGGCACC 57.976 52.632 0.00 0.00 44.96 5.01
6657 7812 2.591429 TGACGCAGGCACCTGTTG 60.591 61.111 17.72 12.85 45.24 3.33
6658 7813 2.591715 GTGACGCAGGCACCTGTT 60.592 61.111 17.72 5.66 45.24 3.16
6659 7814 3.860605 TGTGACGCAGGCACCTGT 61.861 61.111 17.72 0.00 45.24 4.00
6660 7815 3.349006 GTGTGACGCAGGCACCTG 61.349 66.667 12.54 12.54 46.15 4.00
6661 7816 3.860605 TGTGTGACGCAGGCACCT 61.861 61.111 11.21 0.00 35.43 4.00
6662 7817 3.649986 GTGTGTGACGCAGGCACC 61.650 66.667 11.21 4.66 35.43 5.01
6663 7818 2.894879 TGTGTGTGACGCAGGCAC 60.895 61.111 0.00 7.48 33.08 5.01
6664 7819 2.894879 GTGTGTGTGACGCAGGCA 60.895 61.111 0.00 0.00 39.54 4.75
6665 7820 2.894879 TGTGTGTGTGACGCAGGC 60.895 61.111 0.00 0.00 39.54 4.85
6666 7821 1.813337 TGTGTGTGTGTGACGCAGG 60.813 57.895 0.00 0.00 45.80 4.85
6667 7822 1.348250 GTGTGTGTGTGTGACGCAG 59.652 57.895 0.00 0.00 45.80 5.18
6668 7823 1.374758 TGTGTGTGTGTGTGACGCA 60.375 52.632 0.00 0.00 42.96 5.24
6669 7824 1.060308 GTGTGTGTGTGTGTGACGC 59.940 57.895 0.00 0.00 35.45 5.19
6670 7825 0.094558 GTGTGTGTGTGTGTGTGACG 59.905 55.000 0.00 0.00 0.00 4.35
6671 7826 1.136085 GTGTGTGTGTGTGTGTGTGAC 60.136 52.381 0.00 0.00 0.00 3.67
6672 7827 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
6673 7828 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6674 7829 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6675 7830 1.155889 AGTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
6676 7831 1.535028 CAAGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
6677 7832 1.135717 CCAAGTGTGTGTGTGTGTGTG 60.136 52.381 0.00 0.00 0.00 3.82
6678 7833 1.164411 CCAAGTGTGTGTGTGTGTGT 58.836 50.000 0.00 0.00 0.00 3.72
6679 7834 1.130373 GTCCAAGTGTGTGTGTGTGTG 59.870 52.381 0.00 0.00 0.00 3.82
6680 7835 1.448985 GTCCAAGTGTGTGTGTGTGT 58.551 50.000 0.00 0.00 0.00 3.72
6681 7836 0.373370 CGTCCAAGTGTGTGTGTGTG 59.627 55.000 0.00 0.00 0.00 3.82
6682 7837 0.248012 TCGTCCAAGTGTGTGTGTGT 59.752 50.000 0.00 0.00 0.00 3.72
6683 7838 0.650512 GTCGTCCAAGTGTGTGTGTG 59.349 55.000 0.00 0.00 0.00 3.82
6684 7839 0.804544 CGTCGTCCAAGTGTGTGTGT 60.805 55.000 0.00 0.00 0.00 3.72
6685 7840 0.526739 TCGTCGTCCAAGTGTGTGTG 60.527 55.000 0.00 0.00 0.00 3.82
6686 7841 0.173935 TTCGTCGTCCAAGTGTGTGT 59.826 50.000 0.00 0.00 0.00 3.72
6687 7842 1.282817 TTTCGTCGTCCAAGTGTGTG 58.717 50.000 0.00 0.00 0.00 3.82
6688 7843 1.864711 CATTTCGTCGTCCAAGTGTGT 59.135 47.619 0.00 0.00 0.00 3.72
6689 7844 2.096909 GTCATTTCGTCGTCCAAGTGTG 60.097 50.000 0.00 0.00 0.00 3.82
6690 7845 2.132762 GTCATTTCGTCGTCCAAGTGT 58.867 47.619 0.00 0.00 0.00 3.55
6691 7846 2.131972 TGTCATTTCGTCGTCCAAGTG 58.868 47.619 0.00 0.00 0.00 3.16
6692 7847 2.404215 CTGTCATTTCGTCGTCCAAGT 58.596 47.619 0.00 0.00 0.00 3.16
6693 7848 1.126846 GCTGTCATTTCGTCGTCCAAG 59.873 52.381 0.00 0.00 0.00 3.61
6694 7849 1.144969 GCTGTCATTTCGTCGTCCAA 58.855 50.000 0.00 0.00 0.00 3.53
6695 7850 0.317160 AGCTGTCATTTCGTCGTCCA 59.683 50.000 0.00 0.00 0.00 4.02
6696 7851 0.716108 CAGCTGTCATTTCGTCGTCC 59.284 55.000 5.25 0.00 0.00 4.79
6697 7852 1.698165 TCAGCTGTCATTTCGTCGTC 58.302 50.000 14.67 0.00 0.00 4.20
6698 7853 1.995484 CATCAGCTGTCATTTCGTCGT 59.005 47.619 14.67 0.00 0.00 4.34
6699 7854 2.262211 TCATCAGCTGTCATTTCGTCG 58.738 47.619 14.67 0.00 0.00 5.12
6700 7855 3.867493 TGATCATCAGCTGTCATTTCGTC 59.133 43.478 14.67 3.61 0.00 4.20
6701 7856 3.865446 TGATCATCAGCTGTCATTTCGT 58.135 40.909 14.67 0.00 0.00 3.85
6702 7857 4.870221 TTGATCATCAGCTGTCATTTCG 57.130 40.909 14.67 0.00 0.00 3.46
6703 7858 6.792326 TCATTTGATCATCAGCTGTCATTTC 58.208 36.000 14.67 6.55 0.00 2.17
6704 7859 6.769134 TCATTTGATCATCAGCTGTCATTT 57.231 33.333 14.67 0.00 0.00 2.32
6705 7860 6.769134 TTCATTTGATCATCAGCTGTCATT 57.231 33.333 14.67 0.00 0.00 2.57
6706 7861 6.377429 AGTTTCATTTGATCATCAGCTGTCAT 59.623 34.615 14.67 4.03 0.00 3.06
6707 7862 5.708697 AGTTTCATTTGATCATCAGCTGTCA 59.291 36.000 14.67 7.16 0.00 3.58
6708 7863 6.093771 AGAGTTTCATTTGATCATCAGCTGTC 59.906 38.462 14.67 4.21 0.00 3.51
6709 7864 5.944599 AGAGTTTCATTTGATCATCAGCTGT 59.055 36.000 14.67 0.00 0.00 4.40
6710 7865 6.438259 AGAGTTTCATTTGATCATCAGCTG 57.562 37.500 7.63 7.63 0.00 4.24
6711 7866 8.749026 ATTAGAGTTTCATTTGATCATCAGCT 57.251 30.769 0.00 0.00 0.00 4.24
6724 7879 9.466497 TGCTCAGGAAAAATATTAGAGTTTCAT 57.534 29.630 10.84 3.22 32.72 2.57
6725 7880 8.862325 TGCTCAGGAAAAATATTAGAGTTTCA 57.138 30.769 10.84 0.00 32.72 2.69
6758 7913 6.952773 ACCTAGTTGTAGCATTGTCAAAAA 57.047 33.333 0.00 0.00 0.00 1.94
6759 7914 6.146510 CGTACCTAGTTGTAGCATTGTCAAAA 59.853 38.462 0.00 0.00 0.00 2.44
6760 7915 5.636121 CGTACCTAGTTGTAGCATTGTCAAA 59.364 40.000 0.00 0.00 0.00 2.69
6761 7916 5.165676 CGTACCTAGTTGTAGCATTGTCAA 58.834 41.667 0.00 0.00 0.00 3.18
6762 7917 4.219070 ACGTACCTAGTTGTAGCATTGTCA 59.781 41.667 0.00 0.00 0.00 3.58
6763 7918 4.741342 ACGTACCTAGTTGTAGCATTGTC 58.259 43.478 0.00 0.00 0.00 3.18
6764 7919 4.796038 ACGTACCTAGTTGTAGCATTGT 57.204 40.909 0.00 0.00 0.00 2.71
6765 7920 5.888105 AGTACGTACCTAGTTGTAGCATTG 58.112 41.667 21.80 0.00 0.00 2.82
6766 7921 6.151648 TGAAGTACGTACCTAGTTGTAGCATT 59.848 38.462 21.80 4.99 0.00 3.56
6767 7922 5.649395 TGAAGTACGTACCTAGTTGTAGCAT 59.351 40.000 21.80 0.00 0.00 3.79
6768 7923 5.003160 TGAAGTACGTACCTAGTTGTAGCA 58.997 41.667 21.80 1.96 0.00 3.49
6769 7924 5.551760 TGAAGTACGTACCTAGTTGTAGC 57.448 43.478 21.80 0.00 0.00 3.58
6770 7925 7.551035 AGATGAAGTACGTACCTAGTTGTAG 57.449 40.000 21.80 0.00 0.00 2.74
6772 7927 9.270640 CTATAGATGAAGTACGTACCTAGTTGT 57.729 37.037 21.80 5.33 0.00 3.32
6773 7928 9.486497 TCTATAGATGAAGTACGTACCTAGTTG 57.514 37.037 21.80 9.56 0.00 3.16
6774 7929 9.487790 GTCTATAGATGAAGTACGTACCTAGTT 57.512 37.037 21.80 9.75 0.00 2.24
6775 7930 8.869109 AGTCTATAGATGAAGTACGTACCTAGT 58.131 37.037 21.80 6.55 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.