Multiple sequence alignment - TraesCS5A01G123500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G123500 chr5A 100.000 2355 0 0 1 2355 269531924 269529570 0.000000e+00 4349.0
1 TraesCS5A01G123500 chr5A 92.539 1461 53 23 766 2186 172260158 172261602 0.000000e+00 2043.0
2 TraesCS5A01G123500 chr5A 93.333 270 16 2 438 705 172259875 172260144 4.720000e-107 398.0
3 TraesCS5A01G123500 chr7A 91.465 1488 76 20 438 1886 590779937 590778462 0.000000e+00 1997.0
4 TraesCS5A01G123500 chr7A 82.998 1094 125 30 437 1482 638826187 638827267 0.000000e+00 933.0
5 TraesCS5A01G123500 chr7A 93.501 477 22 5 1888 2355 590778371 590777895 0.000000e+00 701.0
6 TraesCS5A01G123500 chr7A 87.590 556 53 12 1479 2022 638827347 638827898 4.270000e-177 630.0
7 TraesCS5A01G123500 chr7A 87.045 440 53 1 3 438 380839865 380840304 5.850000e-136 494.0
8 TraesCS5A01G123500 chr7B 90.885 1503 64 29 765 2224 644267287 644268759 0.000000e+00 1949.0
9 TraesCS5A01G123500 chr7B 92.946 241 16 1 437 676 644267016 644267256 1.340000e-92 350.0
10 TraesCS5A01G123500 chr6A 84.561 1982 197 56 438 2354 593186447 593184510 0.000000e+00 1864.0
11 TraesCS5A01G123500 chr2D 90.661 696 52 9 1394 2080 93939536 93940227 0.000000e+00 913.0
12 TraesCS5A01G123500 chr2D 88.128 438 48 1 5 438 222929951 222929514 3.470000e-143 518.0
13 TraesCS5A01G123500 chrUn 83.963 873 95 28 438 1284 65561549 65562402 0.000000e+00 795.0
14 TraesCS5A01G123500 chrUn 83.314 869 103 23 438 1284 299502219 299503067 0.000000e+00 763.0
15 TraesCS5A01G123500 chr2B 83.199 869 103 24 438 1284 786810413 786811260 0.000000e+00 756.0
16 TraesCS5A01G123500 chr2B 87.955 440 49 1 3 438 446153003 446153442 1.250000e-142 516.0
17 TraesCS5A01G123500 chr2B 84.642 293 18 13 1219 1487 35524928 35525217 1.390000e-67 267.0
18 TraesCS5A01G123500 chr3A 82.648 876 100 28 438 1284 619694 620546 0.000000e+00 728.0
19 TraesCS5A01G123500 chr5B 89.091 440 44 1 3 438 181096525 181096964 5.720000e-151 544.0
20 TraesCS5A01G123500 chr1D 89.066 439 42 3 6 438 293305243 293304805 7.400000e-150 540.0
21 TraesCS5A01G123500 chr4B 81.285 716 78 37 1175 1844 630032383 630033088 1.600000e-146 529.0
22 TraesCS5A01G123500 chr4B 88.235 442 48 1 1 438 351077519 351077960 2.070000e-145 525.0
23 TraesCS5A01G123500 chr4B 87.872 437 43 3 6 438 327398580 327398150 2.700000e-139 505.0
24 TraesCS5A01G123500 chr4B 87.414 437 51 1 6 438 437692991 437692555 1.260000e-137 499.0
25 TraesCS5A01G123500 chr4B 88.802 384 32 9 1893 2269 630035526 630035905 5.930000e-126 460.0
26 TraesCS5A01G123500 chr4B 97.778 45 1 0 2311 2355 630035922 630035966 6.980000e-11 78.7
27 TraesCS5A01G123500 chr4A 86.889 450 52 4 1 444 291152870 291152422 4.520000e-137 497.0
28 TraesCS5A01G123500 chr5D 83.702 362 45 13 438 793 104359303 104359656 1.740000e-86 329.0
29 TraesCS5A01G123500 chr3B 77.681 345 56 14 438 774 131487370 131487039 8.590000e-45 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G123500 chr5A 269529570 269531924 2354 True 4349.0 4349 100.000000 1 2355 1 chr5A.!!$R1 2354
1 TraesCS5A01G123500 chr5A 172259875 172261602 1727 False 1220.5 2043 92.936000 438 2186 2 chr5A.!!$F1 1748
2 TraesCS5A01G123500 chr7A 590777895 590779937 2042 True 1349.0 1997 92.483000 438 2355 2 chr7A.!!$R1 1917
3 TraesCS5A01G123500 chr7A 638826187 638827898 1711 False 781.5 933 85.294000 437 2022 2 chr7A.!!$F2 1585
4 TraesCS5A01G123500 chr7B 644267016 644268759 1743 False 1149.5 1949 91.915500 437 2224 2 chr7B.!!$F1 1787
5 TraesCS5A01G123500 chr6A 593184510 593186447 1937 True 1864.0 1864 84.561000 438 2354 1 chr6A.!!$R1 1916
6 TraesCS5A01G123500 chr2D 93939536 93940227 691 False 913.0 913 90.661000 1394 2080 1 chr2D.!!$F1 686
7 TraesCS5A01G123500 chrUn 65561549 65562402 853 False 795.0 795 83.963000 438 1284 1 chrUn.!!$F1 846
8 TraesCS5A01G123500 chrUn 299502219 299503067 848 False 763.0 763 83.314000 438 1284 1 chrUn.!!$F2 846
9 TraesCS5A01G123500 chr2B 786810413 786811260 847 False 756.0 756 83.199000 438 1284 1 chr2B.!!$F3 846
10 TraesCS5A01G123500 chr3A 619694 620546 852 False 728.0 728 82.648000 438 1284 1 chr3A.!!$F1 846
11 TraesCS5A01G123500 chr4B 630032383 630035966 3583 False 355.9 529 89.288333 1175 2355 3 chr4B.!!$F2 1180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 339 0.036858 GAGCCAGTGAGGAAGGTGAC 60.037 60.0 0.0 0.0 41.22 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1760 0.03213 CTGCGGCGATACAGTATGGT 59.968 55.0 12.98 0.0 43.62 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.779475 ACGGACTGAAGCTGTTGG 57.221 55.556 0.00 0.00 0.00 3.77
18 19 1.598130 ACGGACTGAAGCTGTTGGC 60.598 57.895 0.00 0.00 42.19 4.52
19 20 1.597854 CGGACTGAAGCTGTTGGCA 60.598 57.895 0.00 0.00 44.79 4.92
20 21 1.572085 CGGACTGAAGCTGTTGGCAG 61.572 60.000 0.00 0.00 44.79 4.85
21 22 0.250467 GGACTGAAGCTGTTGGCAGA 60.250 55.000 0.00 0.00 45.28 4.26
22 23 1.155042 GACTGAAGCTGTTGGCAGAG 58.845 55.000 0.00 0.00 45.28 3.35
23 24 0.761187 ACTGAAGCTGTTGGCAGAGA 59.239 50.000 0.00 0.00 45.28 3.10
24 25 1.350351 ACTGAAGCTGTTGGCAGAGAT 59.650 47.619 0.00 0.00 45.28 2.75
25 26 2.568956 ACTGAAGCTGTTGGCAGAGATA 59.431 45.455 0.00 0.00 45.28 1.98
26 27 2.935201 CTGAAGCTGTTGGCAGAGATAC 59.065 50.000 0.00 0.00 45.28 2.24
27 28 2.302733 TGAAGCTGTTGGCAGAGATACA 59.697 45.455 0.00 0.00 45.28 2.29
28 29 2.393271 AGCTGTTGGCAGAGATACAC 57.607 50.000 0.00 0.00 45.28 2.90
29 30 1.625315 AGCTGTTGGCAGAGATACACA 59.375 47.619 0.00 0.00 45.28 3.72
30 31 2.005451 GCTGTTGGCAGAGATACACAG 58.995 52.381 8.50 8.50 45.28 3.66
31 32 2.625737 CTGTTGGCAGAGATACACAGG 58.374 52.381 5.53 0.00 45.28 4.00
32 33 1.278985 TGTTGGCAGAGATACACAGGG 59.721 52.381 0.00 0.00 0.00 4.45
33 34 0.911769 TTGGCAGAGATACACAGGGG 59.088 55.000 0.00 0.00 0.00 4.79
34 35 0.252696 TGGCAGAGATACACAGGGGT 60.253 55.000 0.00 0.00 0.00 4.95
35 36 0.466124 GGCAGAGATACACAGGGGTC 59.534 60.000 0.00 0.00 0.00 4.46
36 37 1.490574 GCAGAGATACACAGGGGTCT 58.509 55.000 0.00 0.00 0.00 3.85
37 38 1.137872 GCAGAGATACACAGGGGTCTG 59.862 57.143 0.00 0.00 46.10 3.51
45 46 4.767255 CAGGGGTCTGTGCGGCTC 62.767 72.222 0.00 0.00 36.30 4.70
47 48 4.459089 GGGGTCTGTGCGGCTCTC 62.459 72.222 0.00 0.00 0.00 3.20
48 49 3.695606 GGGTCTGTGCGGCTCTCA 61.696 66.667 0.00 0.00 0.00 3.27
49 50 2.433318 GGTCTGTGCGGCTCTCAC 60.433 66.667 0.00 0.00 35.14 3.51
50 51 2.340078 GTCTGTGCGGCTCTCACA 59.660 61.111 0.00 0.00 41.62 3.58
51 52 1.079543 GTCTGTGCGGCTCTCACAT 60.080 57.895 0.00 0.00 42.74 3.21
52 53 0.671781 GTCTGTGCGGCTCTCACATT 60.672 55.000 0.00 0.00 42.74 2.71
53 54 0.671472 TCTGTGCGGCTCTCACATTG 60.671 55.000 0.00 0.00 42.74 2.82
54 55 1.642037 CTGTGCGGCTCTCACATTGG 61.642 60.000 0.00 0.00 42.74 3.16
55 56 1.375908 GTGCGGCTCTCACATTGGA 60.376 57.895 0.00 0.00 34.73 3.53
56 57 0.745845 GTGCGGCTCTCACATTGGAT 60.746 55.000 0.00 0.00 34.73 3.41
57 58 0.462581 TGCGGCTCTCACATTGGATC 60.463 55.000 0.00 0.00 0.00 3.36
58 59 1.493950 GCGGCTCTCACATTGGATCG 61.494 60.000 0.00 0.00 0.00 3.69
59 60 0.103026 CGGCTCTCACATTGGATCGA 59.897 55.000 0.00 0.00 0.00 3.59
60 61 1.863267 GGCTCTCACATTGGATCGAG 58.137 55.000 0.00 0.00 0.00 4.04
61 62 1.410517 GGCTCTCACATTGGATCGAGA 59.589 52.381 0.00 0.00 33.60 4.04
63 64 2.741612 CTCTCACATTGGATCGAGAGC 58.258 52.381 9.28 0.00 43.52 4.09
64 65 1.410517 TCTCACATTGGATCGAGAGCC 59.589 52.381 0.00 0.00 37.40 4.70
65 66 0.465705 TCACATTGGATCGAGAGCCC 59.534 55.000 4.83 0.00 35.64 5.19
66 67 0.467384 CACATTGGATCGAGAGCCCT 59.533 55.000 4.83 0.00 35.64 5.19
67 68 0.467384 ACATTGGATCGAGAGCCCTG 59.533 55.000 4.83 5.38 35.64 4.45
68 69 0.250209 CATTGGATCGAGAGCCCTGG 60.250 60.000 4.83 0.00 35.64 4.45
69 70 0.692419 ATTGGATCGAGAGCCCTGGT 60.692 55.000 4.83 0.00 35.64 4.00
70 71 0.909610 TTGGATCGAGAGCCCTGGTT 60.910 55.000 4.83 0.00 35.64 3.67
71 72 1.144936 GGATCGAGAGCCCTGGTTG 59.855 63.158 0.00 0.00 0.00 3.77
72 73 1.144936 GATCGAGAGCCCTGGTTGG 59.855 63.158 0.00 0.00 0.00 3.77
73 74 1.306141 ATCGAGAGCCCTGGTTGGA 60.306 57.895 0.00 0.00 38.35 3.53
74 75 0.909610 ATCGAGAGCCCTGGTTGGAA 60.910 55.000 0.00 0.00 38.35 3.53
75 76 1.125093 TCGAGAGCCCTGGTTGGAAA 61.125 55.000 0.00 0.00 38.35 3.13
76 77 0.250727 CGAGAGCCCTGGTTGGAAAA 60.251 55.000 0.00 0.00 38.35 2.29
77 78 1.539157 GAGAGCCCTGGTTGGAAAAG 58.461 55.000 0.00 0.00 38.35 2.27
78 79 0.540597 AGAGCCCTGGTTGGAAAAGC 60.541 55.000 0.00 0.00 38.35 3.51
79 80 1.533994 AGCCCTGGTTGGAAAAGCC 60.534 57.895 0.00 0.00 38.35 4.35
80 81 1.533994 GCCCTGGTTGGAAAAGCCT 60.534 57.895 0.00 0.00 38.35 4.58
81 82 1.121407 GCCCTGGTTGGAAAAGCCTT 61.121 55.000 0.00 0.00 38.35 4.35
82 83 0.969149 CCCTGGTTGGAAAAGCCTTC 59.031 55.000 0.00 0.00 38.35 3.46
83 84 1.481242 CCCTGGTTGGAAAAGCCTTCT 60.481 52.381 0.00 0.00 38.35 2.85
84 85 1.615392 CCTGGTTGGAAAAGCCTTCTG 59.385 52.381 0.00 0.00 38.35 3.02
85 86 1.615392 CTGGTTGGAAAAGCCTTCTGG 59.385 52.381 0.00 0.00 37.63 3.86
98 99 3.372440 CCTTCTGGCAGGGTTTCTATT 57.628 47.619 15.73 0.00 0.00 1.73
99 100 3.019564 CCTTCTGGCAGGGTTTCTATTG 58.980 50.000 15.73 0.00 0.00 1.90
100 101 2.806945 TCTGGCAGGGTTTCTATTGG 57.193 50.000 15.73 0.00 0.00 3.16
101 102 1.106285 CTGGCAGGGTTTCTATTGGC 58.894 55.000 6.61 0.00 36.72 4.52
102 103 0.324275 TGGCAGGGTTTCTATTGGCC 60.324 55.000 0.00 0.00 40.29 5.36
103 104 1.043116 GGCAGGGTTTCTATTGGCCC 61.043 60.000 0.00 0.00 41.36 5.80
104 105 0.324275 GCAGGGTTTCTATTGGCCCA 60.324 55.000 0.00 0.00 43.42 5.36
105 106 1.474330 CAGGGTTTCTATTGGCCCAC 58.526 55.000 0.00 0.00 43.42 4.61
106 107 1.080638 AGGGTTTCTATTGGCCCACA 58.919 50.000 0.00 0.00 43.42 4.17
107 108 1.005924 AGGGTTTCTATTGGCCCACAG 59.994 52.381 0.00 0.00 43.42 3.66
108 109 0.817654 GGTTTCTATTGGCCCACAGC 59.182 55.000 0.00 0.00 42.60 4.40
118 119 3.736224 CCCACAGCCCTCCAGCAT 61.736 66.667 0.00 0.00 34.23 3.79
119 120 2.439701 CCACAGCCCTCCAGCATG 60.440 66.667 0.00 0.00 34.23 4.06
120 121 2.353958 CACAGCCCTCCAGCATGT 59.646 61.111 0.00 0.00 34.23 3.21
121 122 2.044555 CACAGCCCTCCAGCATGTG 61.045 63.158 0.00 0.00 36.38 3.21
122 123 2.226315 ACAGCCCTCCAGCATGTGA 61.226 57.895 0.00 0.00 34.23 3.58
123 124 1.451567 CAGCCCTCCAGCATGTGAG 60.452 63.158 0.00 0.00 34.50 3.51
124 125 2.827642 GCCCTCCAGCATGTGAGC 60.828 66.667 0.00 0.00 33.73 4.26
126 127 1.976132 GCCCTCCAGCATGTGAGCTA 61.976 60.000 0.00 0.00 44.54 3.32
127 128 0.179062 CCCTCCAGCATGTGAGCTAC 60.179 60.000 0.00 0.00 44.54 3.58
128 129 0.179062 CCTCCAGCATGTGAGCTACC 60.179 60.000 0.00 0.00 44.54 3.18
129 130 0.538584 CTCCAGCATGTGAGCTACCA 59.461 55.000 0.00 0.00 44.54 3.25
130 131 0.983467 TCCAGCATGTGAGCTACCAA 59.017 50.000 0.00 0.00 44.54 3.67
131 132 1.089920 CCAGCATGTGAGCTACCAAC 58.910 55.000 0.00 0.00 44.54 3.77
132 133 1.089920 CAGCATGTGAGCTACCAACC 58.910 55.000 0.00 0.00 44.54 3.77
133 134 0.692476 AGCATGTGAGCTACCAACCA 59.308 50.000 0.00 0.00 44.50 3.67
134 135 1.073763 AGCATGTGAGCTACCAACCAA 59.926 47.619 0.00 0.00 44.50 3.67
135 136 1.470098 GCATGTGAGCTACCAACCAAG 59.530 52.381 0.00 0.00 0.00 3.61
136 137 2.783135 CATGTGAGCTACCAACCAAGT 58.217 47.619 0.00 0.00 0.00 3.16
137 138 2.254546 TGTGAGCTACCAACCAAGTG 57.745 50.000 0.00 0.00 0.00 3.16
138 139 1.488812 TGTGAGCTACCAACCAAGTGT 59.511 47.619 0.00 0.00 0.00 3.55
139 140 1.873591 GTGAGCTACCAACCAAGTGTG 59.126 52.381 0.00 0.00 0.00 3.82
140 141 1.765904 TGAGCTACCAACCAAGTGTGA 59.234 47.619 0.00 0.00 0.00 3.58
141 142 2.171659 TGAGCTACCAACCAAGTGTGAA 59.828 45.455 0.00 0.00 0.00 3.18
142 143 2.808543 GAGCTACCAACCAAGTGTGAAG 59.191 50.000 0.00 0.00 0.00 3.02
143 144 1.266989 GCTACCAACCAAGTGTGAAGC 59.733 52.381 0.00 0.00 0.00 3.86
144 145 2.851195 CTACCAACCAAGTGTGAAGCT 58.149 47.619 0.00 0.00 0.00 3.74
145 146 2.143876 ACCAACCAAGTGTGAAGCTT 57.856 45.000 0.00 0.00 0.00 3.74
146 147 1.750778 ACCAACCAAGTGTGAAGCTTG 59.249 47.619 2.10 0.00 42.00 4.01
147 148 1.536709 CCAACCAAGTGTGAAGCTTGC 60.537 52.381 2.10 0.00 41.27 4.01
148 149 0.746659 AACCAAGTGTGAAGCTTGCC 59.253 50.000 2.10 0.00 41.27 4.52
149 150 0.395586 ACCAAGTGTGAAGCTTGCCA 60.396 50.000 2.10 0.00 41.27 4.92
150 151 0.313043 CCAAGTGTGAAGCTTGCCAG 59.687 55.000 2.10 0.00 41.27 4.85
151 152 1.027357 CAAGTGTGAAGCTTGCCAGT 58.973 50.000 2.10 0.00 37.18 4.00
152 153 1.406539 CAAGTGTGAAGCTTGCCAGTT 59.593 47.619 2.10 6.45 37.18 3.16
153 154 1.312815 AGTGTGAAGCTTGCCAGTTC 58.687 50.000 2.10 0.00 0.00 3.01
154 155 0.312102 GTGTGAAGCTTGCCAGTTCC 59.688 55.000 2.10 0.00 0.00 3.62
155 156 0.106769 TGTGAAGCTTGCCAGTTCCA 60.107 50.000 2.10 0.00 0.00 3.53
156 157 1.251251 GTGAAGCTTGCCAGTTCCAT 58.749 50.000 2.10 0.00 0.00 3.41
157 158 1.615392 GTGAAGCTTGCCAGTTCCATT 59.385 47.619 2.10 0.00 0.00 3.16
158 159 1.888512 TGAAGCTTGCCAGTTCCATTC 59.111 47.619 2.10 0.00 0.00 2.67
159 160 1.203287 GAAGCTTGCCAGTTCCATTCC 59.797 52.381 2.10 0.00 0.00 3.01
160 161 0.112995 AGCTTGCCAGTTCCATTCCA 59.887 50.000 0.00 0.00 0.00 3.53
161 162 0.968405 GCTTGCCAGTTCCATTCCAA 59.032 50.000 0.00 0.00 0.00 3.53
162 163 1.344114 GCTTGCCAGTTCCATTCCAAA 59.656 47.619 0.00 0.00 0.00 3.28
163 164 2.224257 GCTTGCCAGTTCCATTCCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
164 165 3.743899 GCTTGCCAGTTCCATTCCAAAAA 60.744 43.478 0.00 0.00 0.00 1.94
165 166 3.467374 TGCCAGTTCCATTCCAAAAAC 57.533 42.857 0.00 0.00 0.00 2.43
166 167 2.768527 TGCCAGTTCCATTCCAAAAACA 59.231 40.909 0.00 0.00 0.00 2.83
167 168 3.390639 TGCCAGTTCCATTCCAAAAACAT 59.609 39.130 0.00 0.00 0.00 2.71
168 169 4.141528 TGCCAGTTCCATTCCAAAAACATT 60.142 37.500 0.00 0.00 0.00 2.71
169 170 4.452114 GCCAGTTCCATTCCAAAAACATTC 59.548 41.667 0.00 0.00 0.00 2.67
170 171 5.609423 CCAGTTCCATTCCAAAAACATTCA 58.391 37.500 0.00 0.00 0.00 2.57
171 172 6.232692 CCAGTTCCATTCCAAAAACATTCAT 58.767 36.000 0.00 0.00 0.00 2.57
172 173 6.369615 CCAGTTCCATTCCAAAAACATTCATC 59.630 38.462 0.00 0.00 0.00 2.92
173 174 6.930164 CAGTTCCATTCCAAAAACATTCATCA 59.070 34.615 0.00 0.00 0.00 3.07
174 175 7.117236 CAGTTCCATTCCAAAAACATTCATCAG 59.883 37.037 0.00 0.00 0.00 2.90
175 176 5.481105 TCCATTCCAAAAACATTCATCAGC 58.519 37.500 0.00 0.00 0.00 4.26
176 177 4.632688 CCATTCCAAAAACATTCATCAGCC 59.367 41.667 0.00 0.00 0.00 4.85
177 178 4.952071 TTCCAAAAACATTCATCAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
178 179 4.524316 TCCAAAAACATTCATCAGCCAG 57.476 40.909 0.00 0.00 0.00 4.85
179 180 2.997986 CCAAAAACATTCATCAGCCAGC 59.002 45.455 0.00 0.00 0.00 4.85
180 181 3.306502 CCAAAAACATTCATCAGCCAGCT 60.307 43.478 0.00 0.00 0.00 4.24
181 182 3.863142 AAAACATTCATCAGCCAGCTC 57.137 42.857 0.00 0.00 0.00 4.09
182 183 2.502142 AACATTCATCAGCCAGCTCA 57.498 45.000 0.00 0.00 0.00 4.26
183 184 2.502142 ACATTCATCAGCCAGCTCAA 57.498 45.000 0.00 0.00 0.00 3.02
184 185 3.014304 ACATTCATCAGCCAGCTCAAT 57.986 42.857 0.00 0.00 0.00 2.57
185 186 2.950309 ACATTCATCAGCCAGCTCAATC 59.050 45.455 0.00 0.00 0.00 2.67
186 187 3.215151 CATTCATCAGCCAGCTCAATCT 58.785 45.455 0.00 0.00 0.00 2.40
187 188 2.616634 TCATCAGCCAGCTCAATCTC 57.383 50.000 0.00 0.00 0.00 2.75
188 189 2.117051 TCATCAGCCAGCTCAATCTCT 58.883 47.619 0.00 0.00 0.00 3.10
189 190 2.102757 TCATCAGCCAGCTCAATCTCTC 59.897 50.000 0.00 0.00 0.00 3.20
190 191 1.863325 TCAGCCAGCTCAATCTCTCT 58.137 50.000 0.00 0.00 0.00 3.10
191 192 3.023939 TCAGCCAGCTCAATCTCTCTA 57.976 47.619 0.00 0.00 0.00 2.43
192 193 2.957680 TCAGCCAGCTCAATCTCTCTAG 59.042 50.000 0.00 0.00 0.00 2.43
193 194 2.957680 CAGCCAGCTCAATCTCTCTAGA 59.042 50.000 0.00 0.00 35.80 2.43
194 195 2.958355 AGCCAGCTCAATCTCTCTAGAC 59.042 50.000 0.00 0.00 33.57 2.59
195 196 2.287547 GCCAGCTCAATCTCTCTAGACG 60.288 54.545 0.00 0.00 33.57 4.18
196 197 3.210227 CCAGCTCAATCTCTCTAGACGA 58.790 50.000 0.00 0.00 33.57 4.20
197 198 3.003275 CCAGCTCAATCTCTCTAGACGAC 59.997 52.174 0.00 0.00 33.57 4.34
198 199 3.003275 CAGCTCAATCTCTCTAGACGACC 59.997 52.174 0.00 0.00 33.57 4.79
199 200 2.292292 GCTCAATCTCTCTAGACGACCC 59.708 54.545 0.00 0.00 33.57 4.46
200 201 2.882137 CTCAATCTCTCTAGACGACCCC 59.118 54.545 0.00 0.00 33.57 4.95
201 202 2.510382 TCAATCTCTCTAGACGACCCCT 59.490 50.000 0.00 0.00 33.57 4.79
202 203 3.053544 TCAATCTCTCTAGACGACCCCTT 60.054 47.826 0.00 0.00 33.57 3.95
203 204 3.673543 ATCTCTCTAGACGACCCCTTT 57.326 47.619 0.00 0.00 33.57 3.11
204 205 2.724454 TCTCTCTAGACGACCCCTTTG 58.276 52.381 0.00 0.00 0.00 2.77
205 206 2.041350 TCTCTCTAGACGACCCCTTTGT 59.959 50.000 0.00 0.00 0.00 2.83
206 207 2.424246 CTCTCTAGACGACCCCTTTGTC 59.576 54.545 0.00 0.00 38.80 3.18
207 208 1.477295 CTCTAGACGACCCCTTTGTCC 59.523 57.143 0.00 0.00 39.29 4.02
208 209 1.076677 TCTAGACGACCCCTTTGTCCT 59.923 52.381 0.00 0.00 39.29 3.85
209 210 1.204941 CTAGACGACCCCTTTGTCCTG 59.795 57.143 0.00 0.00 39.29 3.86
210 211 1.003718 GACGACCCCTTTGTCCTGG 60.004 63.158 0.00 0.00 32.84 4.45
211 212 2.359975 CGACCCCTTTGTCCTGGC 60.360 66.667 0.00 0.00 31.35 4.85
212 213 2.035783 GACCCCTTTGTCCTGGCC 59.964 66.667 0.00 0.00 0.00 5.36
213 214 2.780924 ACCCCTTTGTCCTGGCCA 60.781 61.111 4.71 4.71 0.00 5.36
214 215 2.155197 GACCCCTTTGTCCTGGCCAT 62.155 60.000 5.51 0.00 0.00 4.40
215 216 1.079073 CCCCTTTGTCCTGGCCATT 59.921 57.895 5.51 0.00 0.00 3.16
216 217 0.972471 CCCCTTTGTCCTGGCCATTC 60.972 60.000 5.51 0.00 0.00 2.67
217 218 0.040204 CCCTTTGTCCTGGCCATTCT 59.960 55.000 5.51 0.00 0.00 2.40
218 219 1.467920 CCTTTGTCCTGGCCATTCTC 58.532 55.000 5.51 0.00 0.00 2.87
219 220 1.272092 CCTTTGTCCTGGCCATTCTCA 60.272 52.381 5.51 0.36 0.00 3.27
220 221 2.089980 CTTTGTCCTGGCCATTCTCAG 58.910 52.381 5.51 0.00 0.00 3.35
221 222 1.067295 TTGTCCTGGCCATTCTCAGT 58.933 50.000 5.51 0.00 0.00 3.41
222 223 0.615331 TGTCCTGGCCATTCTCAGTC 59.385 55.000 5.51 0.00 0.00 3.51
223 224 0.908198 GTCCTGGCCATTCTCAGTCT 59.092 55.000 5.51 0.00 0.00 3.24
224 225 0.907486 TCCTGGCCATTCTCAGTCTG 59.093 55.000 5.51 0.00 0.00 3.51
225 226 0.107312 CCTGGCCATTCTCAGTCTGG 60.107 60.000 5.51 0.00 0.00 3.86
226 227 0.107312 CTGGCCATTCTCAGTCTGGG 60.107 60.000 5.51 0.00 0.00 4.45
227 228 1.225704 GGCCATTCTCAGTCTGGGG 59.774 63.158 0.00 0.00 0.00 4.96
228 229 1.225704 GCCATTCTCAGTCTGGGGG 59.774 63.158 0.00 0.00 0.00 5.40
229 230 1.225704 CCATTCTCAGTCTGGGGGC 59.774 63.158 0.00 0.00 0.00 5.80
230 231 1.277580 CCATTCTCAGTCTGGGGGCT 61.278 60.000 0.00 0.00 0.00 5.19
231 232 0.179936 CATTCTCAGTCTGGGGGCTC 59.820 60.000 0.00 0.00 0.00 4.70
232 233 1.333636 ATTCTCAGTCTGGGGGCTCG 61.334 60.000 0.00 0.00 0.00 5.03
233 234 2.363018 CTCAGTCTGGGGGCTCGA 60.363 66.667 0.00 0.00 0.00 4.04
234 235 1.760086 CTCAGTCTGGGGGCTCGAT 60.760 63.158 0.00 0.00 0.00 3.59
235 236 0.468214 CTCAGTCTGGGGGCTCGATA 60.468 60.000 0.00 0.00 0.00 2.92
236 237 0.188587 TCAGTCTGGGGGCTCGATAT 59.811 55.000 0.00 0.00 0.00 1.63
237 238 0.605589 CAGTCTGGGGGCTCGATATC 59.394 60.000 0.00 0.00 0.00 1.63
238 239 0.485099 AGTCTGGGGGCTCGATATCT 59.515 55.000 0.34 0.00 0.00 1.98
239 240 1.133009 AGTCTGGGGGCTCGATATCTT 60.133 52.381 0.34 0.00 0.00 2.40
240 241 1.001406 GTCTGGGGGCTCGATATCTTG 59.999 57.143 0.34 0.00 0.00 3.02
241 242 0.322975 CTGGGGGCTCGATATCTTGG 59.677 60.000 0.34 0.00 0.00 3.61
242 243 1.127567 TGGGGGCTCGATATCTTGGG 61.128 60.000 0.34 0.00 0.00 4.12
243 244 1.003233 GGGGCTCGATATCTTGGGC 60.003 63.158 0.34 0.00 0.00 5.36
244 245 1.003233 GGGCTCGATATCTTGGGCC 60.003 63.158 11.94 11.94 38.92 5.80
245 246 1.003233 GGCTCGATATCTTGGGCCC 60.003 63.158 17.59 17.59 34.19 5.80
246 247 1.003233 GCTCGATATCTTGGGCCCC 60.003 63.158 22.27 0.85 0.00 5.80
247 248 1.484444 GCTCGATATCTTGGGCCCCT 61.484 60.000 22.27 3.63 0.00 4.79
248 249 1.059913 CTCGATATCTTGGGCCCCTT 58.940 55.000 22.27 3.42 0.00 3.95
249 250 1.421646 CTCGATATCTTGGGCCCCTTT 59.578 52.381 22.27 3.83 0.00 3.11
250 251 1.420138 TCGATATCTTGGGCCCCTTTC 59.580 52.381 22.27 6.75 0.00 2.62
251 252 1.545651 CGATATCTTGGGCCCCTTTCC 60.546 57.143 22.27 1.18 0.00 3.13
252 253 0.860457 ATATCTTGGGCCCCTTTCCC 59.140 55.000 22.27 0.00 44.17 3.97
253 254 1.293683 TATCTTGGGCCCCTTTCCCC 61.294 60.000 22.27 0.00 43.24 4.81
254 255 4.759205 CTTGGGCCCCTTTCCCCG 62.759 72.222 22.27 0.00 44.58 5.73
258 259 3.097162 GGCCCCTTTCCCCGAGAT 61.097 66.667 0.00 0.00 0.00 2.75
259 260 2.193248 GCCCCTTTCCCCGAGATG 59.807 66.667 0.00 0.00 0.00 2.90
260 261 2.680370 GCCCCTTTCCCCGAGATGT 61.680 63.158 0.00 0.00 0.00 3.06
261 262 1.527370 CCCCTTTCCCCGAGATGTC 59.473 63.158 0.00 0.00 0.00 3.06
262 263 1.144057 CCCTTTCCCCGAGATGTCG 59.856 63.158 5.06 5.06 46.39 4.35
271 272 2.992089 CGAGATGTCGGGGGATTTG 58.008 57.895 3.96 0.00 42.87 2.32
272 273 0.464036 CGAGATGTCGGGGGATTTGA 59.536 55.000 3.96 0.00 42.87 2.69
273 274 1.134521 CGAGATGTCGGGGGATTTGAA 60.135 52.381 3.96 0.00 42.87 2.69
274 275 2.485479 CGAGATGTCGGGGGATTTGAAT 60.485 50.000 3.96 0.00 42.87 2.57
275 276 3.555966 GAGATGTCGGGGGATTTGAATT 58.444 45.455 0.00 0.00 0.00 2.17
276 277 3.555966 AGATGTCGGGGGATTTGAATTC 58.444 45.455 0.00 0.00 0.00 2.17
277 278 3.203040 AGATGTCGGGGGATTTGAATTCT 59.797 43.478 7.05 0.00 0.00 2.40
278 279 3.449746 TGTCGGGGGATTTGAATTCTT 57.550 42.857 7.05 0.00 0.00 2.52
279 280 3.088532 TGTCGGGGGATTTGAATTCTTG 58.911 45.455 7.05 0.00 0.00 3.02
280 281 3.089284 GTCGGGGGATTTGAATTCTTGT 58.911 45.455 7.05 0.00 0.00 3.16
281 282 4.263550 TGTCGGGGGATTTGAATTCTTGTA 60.264 41.667 7.05 0.00 0.00 2.41
282 283 4.887655 GTCGGGGGATTTGAATTCTTGTAT 59.112 41.667 7.05 0.00 0.00 2.29
283 284 4.887071 TCGGGGGATTTGAATTCTTGTATG 59.113 41.667 7.05 0.00 0.00 2.39
284 285 4.644685 CGGGGGATTTGAATTCTTGTATGT 59.355 41.667 7.05 0.00 0.00 2.29
285 286 5.825679 CGGGGGATTTGAATTCTTGTATGTA 59.174 40.000 7.05 0.00 0.00 2.29
286 287 6.017109 CGGGGGATTTGAATTCTTGTATGTAG 60.017 42.308 7.05 0.00 0.00 2.74
287 288 6.239036 GGGGGATTTGAATTCTTGTATGTAGC 60.239 42.308 7.05 0.00 0.00 3.58
288 289 6.321181 GGGGATTTGAATTCTTGTATGTAGCA 59.679 38.462 7.05 0.00 0.00 3.49
289 290 7.147915 GGGGATTTGAATTCTTGTATGTAGCAA 60.148 37.037 7.05 0.00 0.00 3.91
290 291 8.416329 GGGATTTGAATTCTTGTATGTAGCAAT 58.584 33.333 7.05 0.00 0.00 3.56
291 292 9.807649 GGATTTGAATTCTTGTATGTAGCAATT 57.192 29.630 7.05 0.00 0.00 2.32
294 295 9.624697 TTTGAATTCTTGTATGTAGCAATTGAC 57.375 29.630 10.34 0.00 0.00 3.18
295 296 8.334263 TGAATTCTTGTATGTAGCAATTGACA 57.666 30.769 10.34 6.00 0.00 3.58
296 297 8.791675 TGAATTCTTGTATGTAGCAATTGACAA 58.208 29.630 10.34 8.64 0.00 3.18
297 298 9.282247 GAATTCTTGTATGTAGCAATTGACAAG 57.718 33.333 20.99 20.99 43.20 3.16
298 299 7.744087 TTCTTGTATGTAGCAATTGACAAGT 57.256 32.000 23.76 6.87 42.68 3.16
299 300 7.744087 TCTTGTATGTAGCAATTGACAAGTT 57.256 32.000 23.76 6.34 42.68 2.66
300 301 8.165239 TCTTGTATGTAGCAATTGACAAGTTT 57.835 30.769 23.76 6.07 42.68 2.66
301 302 9.278978 TCTTGTATGTAGCAATTGACAAGTTTA 57.721 29.630 23.76 10.89 42.68 2.01
302 303 9.891828 CTTGTATGTAGCAATTGACAAGTTTAA 57.108 29.630 19.67 4.28 39.14 1.52
307 308 9.816354 ATGTAGCAATTGACAAGTTTAAAAAGT 57.184 25.926 10.34 0.00 0.00 2.66
308 309 9.081997 TGTAGCAATTGACAAGTTTAAAAAGTG 57.918 29.630 10.34 0.00 0.00 3.16
309 310 7.538303 AGCAATTGACAAGTTTAAAAAGTGG 57.462 32.000 10.34 0.00 0.00 4.00
310 311 6.037062 AGCAATTGACAAGTTTAAAAAGTGGC 59.963 34.615 10.34 0.00 0.00 5.01
311 312 6.714492 CAATTGACAAGTTTAAAAAGTGGCC 58.286 36.000 0.00 0.00 0.00 5.36
312 313 5.669164 TTGACAAGTTTAAAAAGTGGCCT 57.331 34.783 3.32 0.00 0.00 5.19
313 314 5.004922 TGACAAGTTTAAAAAGTGGCCTG 57.995 39.130 3.32 0.00 0.00 4.85
314 315 4.707448 TGACAAGTTTAAAAAGTGGCCTGA 59.293 37.500 3.32 0.00 0.00 3.86
315 316 5.163561 TGACAAGTTTAAAAAGTGGCCTGAG 60.164 40.000 3.32 0.00 0.00 3.35
316 317 4.099419 ACAAGTTTAAAAAGTGGCCTGAGG 59.901 41.667 3.32 0.00 0.00 3.86
317 318 3.910989 AGTTTAAAAAGTGGCCTGAGGT 58.089 40.909 3.32 0.00 0.00 3.85
318 319 3.636764 AGTTTAAAAAGTGGCCTGAGGTG 59.363 43.478 3.32 0.00 0.00 4.00
319 320 2.286365 TAAAAAGTGGCCTGAGGTGG 57.714 50.000 3.32 0.00 0.00 4.61
320 321 0.555769 AAAAAGTGGCCTGAGGTGGA 59.444 50.000 3.32 0.00 0.00 4.02
321 322 0.111253 AAAAGTGGCCTGAGGTGGAG 59.889 55.000 3.32 0.00 0.00 3.86
322 323 2.417558 AAAGTGGCCTGAGGTGGAGC 62.418 60.000 3.32 0.00 0.00 4.70
323 324 4.416738 GTGGCCTGAGGTGGAGCC 62.417 72.222 3.32 0.00 45.96 4.70
325 326 4.106925 GGCCTGAGGTGGAGCCAG 62.107 72.222 0.00 0.00 45.07 4.85
326 327 3.325753 GCCTGAGGTGGAGCCAGT 61.326 66.667 0.00 0.00 40.61 4.00
327 328 2.667418 CCTGAGGTGGAGCCAGTG 59.333 66.667 0.00 0.00 40.61 3.66
328 329 1.915266 CCTGAGGTGGAGCCAGTGA 60.915 63.158 0.00 0.00 40.61 3.41
329 330 1.595882 CTGAGGTGGAGCCAGTGAG 59.404 63.158 0.00 0.00 40.61 3.51
330 331 1.897225 CTGAGGTGGAGCCAGTGAGG 61.897 65.000 0.00 0.00 40.61 3.86
331 332 1.610673 GAGGTGGAGCCAGTGAGGA 60.611 63.158 0.00 0.00 41.22 3.71
332 333 1.152030 AGGTGGAGCCAGTGAGGAA 60.152 57.895 0.00 0.00 41.22 3.36
333 334 1.197430 AGGTGGAGCCAGTGAGGAAG 61.197 60.000 0.00 0.00 41.22 3.46
334 335 1.298014 GTGGAGCCAGTGAGGAAGG 59.702 63.158 0.00 0.00 41.22 3.46
335 336 1.152030 TGGAGCCAGTGAGGAAGGT 60.152 57.895 0.00 0.00 41.22 3.50
336 337 1.298014 GGAGCCAGTGAGGAAGGTG 59.702 63.158 0.00 0.00 41.22 4.00
337 338 1.194781 GGAGCCAGTGAGGAAGGTGA 61.195 60.000 0.00 0.00 41.22 4.02
338 339 0.036858 GAGCCAGTGAGGAAGGTGAC 60.037 60.000 0.00 0.00 41.22 3.67
339 340 1.003233 GCCAGTGAGGAAGGTGACC 60.003 63.158 0.00 0.00 41.22 4.02
340 341 1.293498 CCAGTGAGGAAGGTGACCG 59.707 63.158 0.00 0.00 41.22 4.79
341 342 1.374758 CAGTGAGGAAGGTGACCGC 60.375 63.158 0.00 0.00 0.00 5.68
342 343 1.837051 AGTGAGGAAGGTGACCGCA 60.837 57.895 0.00 0.00 35.08 5.69
343 344 1.668151 GTGAGGAAGGTGACCGCAC 60.668 63.158 0.00 0.00 46.71 5.34
344 345 2.137528 TGAGGAAGGTGACCGCACA 61.138 57.895 0.00 0.00 46.96 4.57
345 346 1.070786 GAGGAAGGTGACCGCACAA 59.929 57.895 0.00 0.00 46.96 3.33
346 347 0.321653 GAGGAAGGTGACCGCACAAT 60.322 55.000 0.00 0.00 46.96 2.71
347 348 0.321653 AGGAAGGTGACCGCACAATC 60.322 55.000 0.00 0.00 46.96 2.67
348 349 0.605319 GGAAGGTGACCGCACAATCA 60.605 55.000 0.00 0.00 46.96 2.57
349 350 0.798776 GAAGGTGACCGCACAATCAG 59.201 55.000 0.00 0.00 46.96 2.90
350 351 1.237285 AAGGTGACCGCACAATCAGC 61.237 55.000 0.00 0.00 46.96 4.26
351 352 1.672356 GGTGACCGCACAATCAGCT 60.672 57.895 0.00 0.00 46.96 4.24
352 353 1.499056 GTGACCGCACAATCAGCTG 59.501 57.895 7.63 7.63 44.51 4.24
353 354 1.071299 TGACCGCACAATCAGCTGT 59.929 52.632 14.67 0.00 31.98 4.40
354 355 0.950555 TGACCGCACAATCAGCTGTC 60.951 55.000 14.67 0.63 43.64 3.51
355 356 0.950555 GACCGCACAATCAGCTGTCA 60.951 55.000 14.67 0.00 43.10 3.58
356 357 0.534877 ACCGCACAATCAGCTGTCAA 60.535 50.000 14.67 0.00 0.00 3.18
357 358 0.110056 CCGCACAATCAGCTGTCAAC 60.110 55.000 14.67 0.00 0.00 3.18
358 359 0.870393 CGCACAATCAGCTGTCAACT 59.130 50.000 14.67 0.00 0.00 3.16
359 360 1.265095 CGCACAATCAGCTGTCAACTT 59.735 47.619 14.67 0.00 0.00 2.66
360 361 2.663879 CGCACAATCAGCTGTCAACTTC 60.664 50.000 14.67 0.00 0.00 3.01
361 362 2.551459 GCACAATCAGCTGTCAACTTCT 59.449 45.455 14.67 0.00 0.00 2.85
362 363 3.004106 GCACAATCAGCTGTCAACTTCTT 59.996 43.478 14.67 0.00 0.00 2.52
363 364 4.534168 CACAATCAGCTGTCAACTTCTTG 58.466 43.478 14.67 8.16 0.00 3.02
364 365 4.274214 CACAATCAGCTGTCAACTTCTTGA 59.726 41.667 14.67 0.00 33.76 3.02
365 366 4.883585 ACAATCAGCTGTCAACTTCTTGAA 59.116 37.500 14.67 0.00 38.17 2.69
366 367 5.357878 ACAATCAGCTGTCAACTTCTTGAAA 59.642 36.000 14.67 0.00 38.17 2.69
367 368 5.686159 ATCAGCTGTCAACTTCTTGAAAG 57.314 39.130 14.67 0.00 42.71 2.62
368 369 3.879295 TCAGCTGTCAACTTCTTGAAAGG 59.121 43.478 14.67 0.00 40.83 3.11
369 370 3.879295 CAGCTGTCAACTTCTTGAAAGGA 59.121 43.478 5.25 0.00 40.83 3.36
370 371 4.518211 CAGCTGTCAACTTCTTGAAAGGAT 59.482 41.667 5.25 0.00 40.83 3.24
371 372 5.009410 CAGCTGTCAACTTCTTGAAAGGATT 59.991 40.000 5.25 0.00 40.83 3.01
372 373 5.009410 AGCTGTCAACTTCTTGAAAGGATTG 59.991 40.000 3.39 0.00 40.83 2.67
373 374 5.766222 CTGTCAACTTCTTGAAAGGATTGG 58.234 41.667 0.00 0.00 37.90 3.16
374 375 5.200483 TGTCAACTTCTTGAAAGGATTGGT 58.800 37.500 0.00 0.00 38.17 3.67
375 376 5.067674 TGTCAACTTCTTGAAAGGATTGGTG 59.932 40.000 0.00 0.00 38.17 4.17
376 377 5.067805 GTCAACTTCTTGAAAGGATTGGTGT 59.932 40.000 0.00 0.00 38.17 4.16
377 378 5.067674 TCAACTTCTTGAAAGGATTGGTGTG 59.932 40.000 0.00 0.00 33.20 3.82
378 379 3.319122 ACTTCTTGAAAGGATTGGTGTGC 59.681 43.478 0.00 0.00 0.00 4.57
379 380 2.238521 TCTTGAAAGGATTGGTGTGCC 58.761 47.619 0.00 0.00 0.00 5.01
380 381 0.958091 TTGAAAGGATTGGTGTGCCG 59.042 50.000 0.00 0.00 37.67 5.69
381 382 0.893270 TGAAAGGATTGGTGTGCCGG 60.893 55.000 0.00 0.00 37.67 6.13
382 383 0.893727 GAAAGGATTGGTGTGCCGGT 60.894 55.000 1.90 0.00 37.67 5.28
383 384 0.469144 AAAGGATTGGTGTGCCGGTT 60.469 50.000 1.90 0.00 37.67 4.44
384 385 0.469144 AAGGATTGGTGTGCCGGTTT 60.469 50.000 1.90 0.00 37.67 3.27
385 386 1.178534 AGGATTGGTGTGCCGGTTTG 61.179 55.000 1.90 0.00 37.67 2.93
386 387 1.288752 GATTGGTGTGCCGGTTTGG 59.711 57.895 1.90 0.00 42.50 3.28
387 388 1.152652 ATTGGTGTGCCGGTTTGGA 60.153 52.632 1.90 0.00 42.00 3.53
388 389 1.178534 ATTGGTGTGCCGGTTTGGAG 61.179 55.000 1.90 0.00 42.00 3.86
389 390 2.203294 GGTGTGCCGGTTTGGAGT 60.203 61.111 1.90 0.00 42.00 3.85
390 391 1.071814 GGTGTGCCGGTTTGGAGTA 59.928 57.895 1.90 0.00 42.00 2.59
391 392 1.232621 GGTGTGCCGGTTTGGAGTAC 61.233 60.000 1.90 0.00 42.00 2.73
392 393 1.071814 TGTGCCGGTTTGGAGTACC 59.928 57.895 1.90 0.00 42.00 3.34
393 394 1.673337 GTGCCGGTTTGGAGTACCC 60.673 63.158 1.90 0.00 42.00 3.69
394 395 2.148052 TGCCGGTTTGGAGTACCCA 61.148 57.895 1.90 0.00 44.93 4.51
403 404 2.391926 TGGAGTACCCAACAGAGTGA 57.608 50.000 1.01 0.00 43.29 3.41
404 405 2.902608 TGGAGTACCCAACAGAGTGAT 58.097 47.619 1.01 0.00 43.29 3.06
405 406 3.248024 TGGAGTACCCAACAGAGTGATT 58.752 45.455 1.01 0.00 43.29 2.57
406 407 4.422057 TGGAGTACCCAACAGAGTGATTA 58.578 43.478 1.01 0.00 43.29 1.75
407 408 4.222145 TGGAGTACCCAACAGAGTGATTAC 59.778 45.833 1.01 0.00 43.29 1.89
408 409 4.466726 GGAGTACCCAACAGAGTGATTACT 59.533 45.833 0.00 0.00 35.69 2.24
409 410 5.407407 AGTACCCAACAGAGTGATTACTG 57.593 43.478 0.00 0.00 37.25 2.74
410 411 5.084519 AGTACCCAACAGAGTGATTACTGA 58.915 41.667 0.00 0.00 37.25 3.41
411 412 4.273148 ACCCAACAGAGTGATTACTGAC 57.727 45.455 0.00 0.00 37.25 3.51
412 413 3.646162 ACCCAACAGAGTGATTACTGACA 59.354 43.478 0.00 0.00 37.25 3.58
413 414 4.102524 ACCCAACAGAGTGATTACTGACAA 59.897 41.667 0.00 0.00 37.25 3.18
414 415 4.452455 CCCAACAGAGTGATTACTGACAAC 59.548 45.833 0.00 0.00 37.25 3.32
415 416 4.150627 CCAACAGAGTGATTACTGACAACG 59.849 45.833 0.00 0.00 37.25 4.10
416 417 3.914312 ACAGAGTGATTACTGACAACGG 58.086 45.455 0.00 0.00 37.25 4.44
417 418 2.668457 CAGAGTGATTACTGACAACGGC 59.332 50.000 0.00 0.00 37.25 5.68
418 419 2.299013 AGAGTGATTACTGACAACGGCA 59.701 45.455 0.00 0.00 37.25 5.69
419 420 2.412089 GAGTGATTACTGACAACGGCAC 59.588 50.000 0.00 0.00 37.25 5.01
420 421 1.463444 GTGATTACTGACAACGGCACC 59.537 52.381 0.00 0.00 0.00 5.01
421 422 0.719465 GATTACTGACAACGGCACCG 59.281 55.000 7.71 7.71 46.03 4.94
422 423 0.319083 ATTACTGACAACGGCACCGA 59.681 50.000 17.40 0.00 42.83 4.69
423 424 0.319211 TTACTGACAACGGCACCGAG 60.319 55.000 17.40 10.23 42.83 4.63
424 425 1.457823 TACTGACAACGGCACCGAGT 61.458 55.000 17.40 13.48 42.83 4.18
425 426 1.594293 CTGACAACGGCACCGAGTT 60.594 57.895 17.40 0.00 42.83 3.01
426 427 1.557443 CTGACAACGGCACCGAGTTC 61.557 60.000 17.40 8.64 42.83 3.01
427 428 1.593209 GACAACGGCACCGAGTTCA 60.593 57.895 17.40 0.00 42.83 3.18
428 429 0.949105 GACAACGGCACCGAGTTCAT 60.949 55.000 17.40 0.00 42.83 2.57
429 430 1.227999 ACAACGGCACCGAGTTCATG 61.228 55.000 17.40 7.06 42.83 3.07
430 431 0.948623 CAACGGCACCGAGTTCATGA 60.949 55.000 17.40 0.00 42.83 3.07
431 432 0.670546 AACGGCACCGAGTTCATGAG 60.671 55.000 17.40 0.00 42.83 2.90
432 433 2.456119 CGGCACCGAGTTCATGAGC 61.456 63.158 2.01 0.50 42.83 4.26
433 434 1.078848 GGCACCGAGTTCATGAGCT 60.079 57.895 12.36 12.36 0.00 4.09
434 435 1.364626 GGCACCGAGTTCATGAGCTG 61.365 60.000 17.57 6.09 0.00 4.24
435 436 1.975363 GCACCGAGTTCATGAGCTGC 61.975 60.000 17.57 10.98 0.00 5.25
652 654 3.311486 TGTGTGTCGCTGATTCATGTA 57.689 42.857 0.00 0.00 0.00 2.29
653 655 3.658709 TGTGTGTCGCTGATTCATGTAA 58.341 40.909 0.00 0.00 0.00 2.41
665 667 7.589587 CGCTGATTCATGTAAACACAAAAAGTA 59.410 33.333 0.00 0.00 0.00 2.24
720 726 1.448540 CGCGGAAAGAGAGCCATGT 60.449 57.895 0.00 0.00 0.00 3.21
752 758 0.820074 AAACACCCGATTCGCACCAA 60.820 50.000 0.00 0.00 0.00 3.67
759 765 0.871722 CGATTCGCACCAAACCAGAA 59.128 50.000 0.00 0.00 0.00 3.02
794 817 2.283966 CACCAGACCCTCGACCCT 60.284 66.667 0.00 0.00 0.00 4.34
818 851 2.092968 CCTGTTCGATCCCCAATCTCAA 60.093 50.000 0.00 0.00 31.68 3.02
819 852 3.434167 CCTGTTCGATCCCCAATCTCAAT 60.434 47.826 0.00 0.00 31.68 2.57
821 854 3.455910 TGTTCGATCCCCAATCTCAATCT 59.544 43.478 0.00 0.00 31.68 2.40
823 856 3.308401 TCGATCCCCAATCTCAATCTCA 58.692 45.455 0.00 0.00 31.68 3.27
826 859 2.850833 TCCCCAATCTCAATCTCACCT 58.149 47.619 0.00 0.00 0.00 4.00
853 898 0.613572 TCTATCTCGCCACCCACACA 60.614 55.000 0.00 0.00 0.00 3.72
854 899 0.460284 CTATCTCGCCACCCACACAC 60.460 60.000 0.00 0.00 0.00 3.82
855 900 1.895020 TATCTCGCCACCCACACACC 61.895 60.000 0.00 0.00 0.00 4.16
1016 1069 2.418910 CGATGGAGGAGCACCGTCT 61.419 63.158 0.00 0.00 40.21 4.18
1053 1109 2.990479 GTCCGCCACCAAGGATCT 59.010 61.111 0.00 0.00 41.22 2.75
1107 1163 4.814294 GATCCGCCGCACCGACTT 62.814 66.667 0.00 0.00 0.00 3.01
1317 1401 0.179000 CCAGGTCTAGGTCATGGCAC 59.821 60.000 0.00 0.00 30.29 5.01
1376 1461 1.134280 AGTCGCTCATTGGATGGGAAG 60.134 52.381 0.00 0.00 30.24 3.46
1388 1473 3.780294 TGGATGGGAAGTGCTACTGTATT 59.220 43.478 0.00 0.00 0.00 1.89
1389 1474 4.130118 GGATGGGAAGTGCTACTGTATTG 58.870 47.826 0.00 0.00 0.00 1.90
1390 1475 4.141711 GGATGGGAAGTGCTACTGTATTGA 60.142 45.833 0.00 0.00 0.00 2.57
1391 1476 4.202245 TGGGAAGTGCTACTGTATTGAC 57.798 45.455 0.00 0.00 0.00 3.18
1393 1478 3.532542 GGAAGTGCTACTGTATTGACCC 58.467 50.000 0.00 0.00 0.00 4.46
1394 1479 3.532542 GAAGTGCTACTGTATTGACCCC 58.467 50.000 0.00 0.00 0.00 4.95
1420 1526 7.094762 CCCTAAAGAAAGGAGTATCAACACAAC 60.095 40.741 0.00 0.00 39.15 3.32
1594 1790 2.296190 TGTATCGCCGCAGAGACAATAT 59.704 45.455 9.27 0.00 39.11 1.28
1790 2019 3.724508 TGGCGACACATGTGAATTTTT 57.275 38.095 31.94 8.57 33.40 1.94
1848 2089 7.829725 TGGAAGGAATGTTCATAAAGATTGTG 58.170 34.615 0.00 0.00 29.13 3.33
2194 4955 1.260544 ATGAAGGCCCAGTTGCTTTC 58.739 50.000 0.00 1.45 44.83 2.62
2202 4963 1.068895 CCCAGTTGCTTTCATGCACAA 59.931 47.619 0.00 0.00 43.20 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.598130 GCCAACAGCTTCAGTCCGT 60.598 57.895 0.00 0.00 38.99 4.69
2 3 0.250467 TCTGCCAACAGCTTCAGTCC 60.250 55.000 0.00 0.00 44.10 3.85
3 4 1.155042 CTCTGCCAACAGCTTCAGTC 58.845 55.000 0.00 0.00 44.10 3.51
4 5 0.761187 TCTCTGCCAACAGCTTCAGT 59.239 50.000 0.00 0.00 44.10 3.41
5 6 2.110901 ATCTCTGCCAACAGCTTCAG 57.889 50.000 0.00 0.00 44.10 3.02
6 7 2.302733 TGTATCTCTGCCAACAGCTTCA 59.697 45.455 0.00 0.00 44.10 3.02
7 8 2.675348 GTGTATCTCTGCCAACAGCTTC 59.325 50.000 0.00 0.00 44.10 3.86
8 9 2.038952 TGTGTATCTCTGCCAACAGCTT 59.961 45.455 0.00 0.00 44.10 3.74
9 10 1.625315 TGTGTATCTCTGCCAACAGCT 59.375 47.619 0.00 0.00 44.10 4.24
10 11 2.005451 CTGTGTATCTCTGCCAACAGC 58.995 52.381 0.00 0.00 44.10 4.40
11 12 2.625737 CCTGTGTATCTCTGCCAACAG 58.374 52.381 0.00 0.00 45.95 3.16
12 13 1.278985 CCCTGTGTATCTCTGCCAACA 59.721 52.381 0.00 0.00 0.00 3.33
13 14 1.407437 CCCCTGTGTATCTCTGCCAAC 60.407 57.143 0.00 0.00 0.00 3.77
14 15 0.911769 CCCCTGTGTATCTCTGCCAA 59.088 55.000 0.00 0.00 0.00 4.52
15 16 0.252696 ACCCCTGTGTATCTCTGCCA 60.253 55.000 0.00 0.00 0.00 4.92
16 17 0.466124 GACCCCTGTGTATCTCTGCC 59.534 60.000 0.00 0.00 0.00 4.85
17 18 1.137872 CAGACCCCTGTGTATCTCTGC 59.862 57.143 0.00 0.00 35.70 4.26
28 29 4.767255 GAGCCGCACAGACCCCTG 62.767 72.222 0.00 0.00 45.76 4.45
30 31 4.459089 GAGAGCCGCACAGACCCC 62.459 72.222 0.00 0.00 0.00 4.95
31 32 3.695606 TGAGAGCCGCACAGACCC 61.696 66.667 0.00 0.00 0.00 4.46
32 33 2.433318 GTGAGAGCCGCACAGACC 60.433 66.667 0.00 0.00 34.45 3.85
33 34 0.671781 AATGTGAGAGCCGCACAGAC 60.672 55.000 14.67 0.00 45.99 3.51
34 35 0.671472 CAATGTGAGAGCCGCACAGA 60.671 55.000 14.67 0.00 45.99 3.41
35 36 1.642037 CCAATGTGAGAGCCGCACAG 61.642 60.000 14.67 5.20 45.99 3.66
36 37 1.672030 CCAATGTGAGAGCCGCACA 60.672 57.895 12.50 12.50 46.72 4.57
37 38 0.745845 ATCCAATGTGAGAGCCGCAC 60.746 55.000 0.00 2.87 38.22 5.34
38 39 0.462581 GATCCAATGTGAGAGCCGCA 60.463 55.000 0.00 0.00 39.93 5.69
39 40 1.493950 CGATCCAATGTGAGAGCCGC 61.494 60.000 0.00 0.00 0.00 6.53
40 41 0.103026 TCGATCCAATGTGAGAGCCG 59.897 55.000 0.00 0.00 0.00 5.52
41 42 1.410517 TCTCGATCCAATGTGAGAGCC 59.589 52.381 0.00 0.00 32.80 4.70
42 43 2.741612 CTCTCGATCCAATGTGAGAGC 58.258 52.381 9.28 0.00 45.45 4.09
44 45 1.410517 GGCTCTCGATCCAATGTGAGA 59.589 52.381 0.00 0.13 36.18 3.27
45 46 1.539929 GGGCTCTCGATCCAATGTGAG 60.540 57.143 0.00 0.00 0.00 3.51
46 47 0.465705 GGGCTCTCGATCCAATGTGA 59.534 55.000 0.00 0.00 0.00 3.58
47 48 0.467384 AGGGCTCTCGATCCAATGTG 59.533 55.000 0.00 0.00 0.00 3.21
48 49 0.467384 CAGGGCTCTCGATCCAATGT 59.533 55.000 0.00 0.00 0.00 2.71
49 50 0.250209 CCAGGGCTCTCGATCCAATG 60.250 60.000 0.00 0.00 0.00 2.82
50 51 0.692419 ACCAGGGCTCTCGATCCAAT 60.692 55.000 0.00 0.00 0.00 3.16
51 52 0.909610 AACCAGGGCTCTCGATCCAA 60.910 55.000 0.00 0.00 0.00 3.53
52 53 1.306141 AACCAGGGCTCTCGATCCA 60.306 57.895 0.00 0.00 0.00 3.41
53 54 1.144936 CAACCAGGGCTCTCGATCC 59.855 63.158 0.00 0.00 0.00 3.36
54 55 1.144936 CCAACCAGGGCTCTCGATC 59.855 63.158 0.00 0.00 0.00 3.69
55 56 0.909610 TTCCAACCAGGGCTCTCGAT 60.910 55.000 0.00 0.00 38.24 3.59
56 57 1.125093 TTTCCAACCAGGGCTCTCGA 61.125 55.000 0.00 0.00 38.24 4.04
57 58 0.250727 TTTTCCAACCAGGGCTCTCG 60.251 55.000 0.00 0.00 38.24 4.04
58 59 1.539157 CTTTTCCAACCAGGGCTCTC 58.461 55.000 0.00 0.00 38.24 3.20
59 60 0.540597 GCTTTTCCAACCAGGGCTCT 60.541 55.000 0.00 0.00 38.24 4.09
60 61 1.536073 GGCTTTTCCAACCAGGGCTC 61.536 60.000 0.00 0.00 38.24 4.70
61 62 1.533994 GGCTTTTCCAACCAGGGCT 60.534 57.895 0.00 0.00 38.24 5.19
62 63 1.121407 AAGGCTTTTCCAACCAGGGC 61.121 55.000 0.00 0.00 38.24 5.19
63 64 0.969149 GAAGGCTTTTCCAACCAGGG 59.031 55.000 0.00 0.00 38.24 4.45
64 65 1.615392 CAGAAGGCTTTTCCAACCAGG 59.385 52.381 0.00 0.00 37.29 4.45
65 66 1.615392 CCAGAAGGCTTTTCCAACCAG 59.385 52.381 0.00 0.00 37.29 4.00
66 67 1.703411 CCAGAAGGCTTTTCCAACCA 58.297 50.000 0.00 0.00 37.29 3.67
78 79 3.019564 CAATAGAAACCCTGCCAGAAGG 58.980 50.000 0.00 0.00 37.05 3.46
79 80 3.019564 CCAATAGAAACCCTGCCAGAAG 58.980 50.000 0.00 0.00 0.00 2.85
80 81 2.883888 GCCAATAGAAACCCTGCCAGAA 60.884 50.000 0.00 0.00 0.00 3.02
81 82 1.340991 GCCAATAGAAACCCTGCCAGA 60.341 52.381 0.00 0.00 0.00 3.86
82 83 1.106285 GCCAATAGAAACCCTGCCAG 58.894 55.000 0.00 0.00 0.00 4.85
83 84 0.324275 GGCCAATAGAAACCCTGCCA 60.324 55.000 0.00 0.00 37.36 4.92
84 85 1.043116 GGGCCAATAGAAACCCTGCC 61.043 60.000 4.39 0.00 39.42 4.85
85 86 0.324275 TGGGCCAATAGAAACCCTGC 60.324 55.000 2.13 0.00 43.25 4.85
86 87 1.272425 TGTGGGCCAATAGAAACCCTG 60.272 52.381 8.40 0.00 43.25 4.45
87 88 1.005924 CTGTGGGCCAATAGAAACCCT 59.994 52.381 8.40 0.00 43.25 4.34
88 89 1.474330 CTGTGGGCCAATAGAAACCC 58.526 55.000 8.40 0.00 43.14 4.11
89 90 0.817654 GCTGTGGGCCAATAGAAACC 59.182 55.000 19.92 1.66 34.27 3.27
101 102 3.736224 ATGCTGGAGGGCTGTGGG 61.736 66.667 0.00 0.00 0.00 4.61
102 103 2.439701 CATGCTGGAGGGCTGTGG 60.440 66.667 0.00 0.00 0.00 4.17
103 104 2.044555 CACATGCTGGAGGGCTGTG 61.045 63.158 0.00 0.00 36.19 3.66
104 105 2.194388 CTCACATGCTGGAGGGCTGT 62.194 60.000 0.00 0.00 0.00 4.40
105 106 1.451567 CTCACATGCTGGAGGGCTG 60.452 63.158 0.00 0.00 0.00 4.85
106 107 2.996395 CTCACATGCTGGAGGGCT 59.004 61.111 0.00 0.00 0.00 5.19
107 108 1.976132 TAGCTCACATGCTGGAGGGC 61.976 60.000 10.52 0.29 43.87 5.19
108 109 0.179062 GTAGCTCACATGCTGGAGGG 60.179 60.000 10.52 0.00 43.87 4.30
109 110 0.179062 GGTAGCTCACATGCTGGAGG 60.179 60.000 10.52 0.00 43.87 4.30
110 111 0.538584 TGGTAGCTCACATGCTGGAG 59.461 55.000 0.00 0.00 43.87 3.86
111 112 0.983467 TTGGTAGCTCACATGCTGGA 59.017 50.000 0.00 0.00 43.87 3.86
112 113 1.089920 GTTGGTAGCTCACATGCTGG 58.910 55.000 0.00 0.00 43.87 4.85
113 114 1.089920 GGTTGGTAGCTCACATGCTG 58.910 55.000 0.00 0.00 43.87 4.41
114 115 0.692476 TGGTTGGTAGCTCACATGCT 59.308 50.000 0.00 0.00 46.11 3.79
115 116 1.470098 CTTGGTTGGTAGCTCACATGC 59.530 52.381 0.00 0.00 0.00 4.06
116 117 2.485426 CACTTGGTTGGTAGCTCACATG 59.515 50.000 0.00 0.00 0.00 3.21
117 118 2.106511 ACACTTGGTTGGTAGCTCACAT 59.893 45.455 0.00 0.00 0.00 3.21
118 119 1.488812 ACACTTGGTTGGTAGCTCACA 59.511 47.619 0.00 0.00 0.00 3.58
119 120 1.873591 CACACTTGGTTGGTAGCTCAC 59.126 52.381 0.00 0.00 0.00 3.51
120 121 1.765904 TCACACTTGGTTGGTAGCTCA 59.234 47.619 0.00 0.00 0.00 4.26
121 122 2.543777 TCACACTTGGTTGGTAGCTC 57.456 50.000 0.00 0.00 0.00 4.09
122 123 2.851195 CTTCACACTTGGTTGGTAGCT 58.149 47.619 0.00 0.00 0.00 3.32
123 124 1.266989 GCTTCACACTTGGTTGGTAGC 59.733 52.381 0.00 0.00 0.00 3.58
124 125 2.851195 AGCTTCACACTTGGTTGGTAG 58.149 47.619 0.00 0.00 0.00 3.18
125 126 2.948979 CAAGCTTCACACTTGGTTGGTA 59.051 45.455 0.00 0.00 40.68 3.25
126 127 1.750778 CAAGCTTCACACTTGGTTGGT 59.249 47.619 0.00 0.00 40.68 3.67
127 128 1.536709 GCAAGCTTCACACTTGGTTGG 60.537 52.381 0.00 0.00 43.81 3.77
128 129 1.536709 GGCAAGCTTCACACTTGGTTG 60.537 52.381 0.00 0.00 43.81 3.77
129 130 0.746659 GGCAAGCTTCACACTTGGTT 59.253 50.000 0.00 0.00 43.81 3.67
130 131 0.395586 TGGCAAGCTTCACACTTGGT 60.396 50.000 0.00 0.00 43.81 3.67
131 132 0.313043 CTGGCAAGCTTCACACTTGG 59.687 55.000 0.00 0.00 43.81 3.61
132 133 1.027357 ACTGGCAAGCTTCACACTTG 58.973 50.000 0.00 0.00 45.88 3.16
133 134 1.678101 GAACTGGCAAGCTTCACACTT 59.322 47.619 0.00 0.00 0.00 3.16
134 135 1.312815 GAACTGGCAAGCTTCACACT 58.687 50.000 0.00 0.00 0.00 3.55
135 136 0.312102 GGAACTGGCAAGCTTCACAC 59.688 55.000 0.00 0.00 0.00 3.82
136 137 0.106769 TGGAACTGGCAAGCTTCACA 60.107 50.000 0.00 0.00 0.00 3.58
137 138 1.251251 ATGGAACTGGCAAGCTTCAC 58.749 50.000 0.00 0.00 0.00 3.18
138 139 1.888512 GAATGGAACTGGCAAGCTTCA 59.111 47.619 0.00 0.00 0.00 3.02
139 140 1.203287 GGAATGGAACTGGCAAGCTTC 59.797 52.381 0.00 0.00 0.00 3.86
140 141 1.260544 GGAATGGAACTGGCAAGCTT 58.739 50.000 0.00 0.00 0.00 3.74
141 142 0.112995 TGGAATGGAACTGGCAAGCT 59.887 50.000 0.00 0.00 0.00 3.74
142 143 0.968405 TTGGAATGGAACTGGCAAGC 59.032 50.000 0.00 0.00 0.00 4.01
143 144 3.749665 TTTTGGAATGGAACTGGCAAG 57.250 42.857 0.00 0.00 0.00 4.01
144 145 3.198635 TGTTTTTGGAATGGAACTGGCAA 59.801 39.130 0.00 0.00 0.00 4.52
145 146 2.768527 TGTTTTTGGAATGGAACTGGCA 59.231 40.909 0.00 0.00 0.00 4.92
146 147 3.467374 TGTTTTTGGAATGGAACTGGC 57.533 42.857 0.00 0.00 0.00 4.85
147 148 5.609423 TGAATGTTTTTGGAATGGAACTGG 58.391 37.500 0.00 0.00 0.00 4.00
148 149 6.930164 TGATGAATGTTTTTGGAATGGAACTG 59.070 34.615 0.00 0.00 0.00 3.16
149 150 7.065120 TGATGAATGTTTTTGGAATGGAACT 57.935 32.000 0.00 0.00 0.00 3.01
150 151 6.128472 GCTGATGAATGTTTTTGGAATGGAAC 60.128 38.462 0.00 0.00 0.00 3.62
151 152 5.933463 GCTGATGAATGTTTTTGGAATGGAA 59.067 36.000 0.00 0.00 0.00 3.53
152 153 5.481105 GCTGATGAATGTTTTTGGAATGGA 58.519 37.500 0.00 0.00 0.00 3.41
153 154 4.632688 GGCTGATGAATGTTTTTGGAATGG 59.367 41.667 0.00 0.00 0.00 3.16
154 155 5.239351 TGGCTGATGAATGTTTTTGGAATG 58.761 37.500 0.00 0.00 0.00 2.67
155 156 5.484715 CTGGCTGATGAATGTTTTTGGAAT 58.515 37.500 0.00 0.00 0.00 3.01
156 157 4.800249 GCTGGCTGATGAATGTTTTTGGAA 60.800 41.667 0.00 0.00 0.00 3.53
157 158 3.306225 GCTGGCTGATGAATGTTTTTGGA 60.306 43.478 0.00 0.00 0.00 3.53
158 159 2.997986 GCTGGCTGATGAATGTTTTTGG 59.002 45.455 0.00 0.00 0.00 3.28
159 160 3.921677 AGCTGGCTGATGAATGTTTTTG 58.078 40.909 0.00 0.00 0.00 2.44
160 161 3.575256 TGAGCTGGCTGATGAATGTTTTT 59.425 39.130 0.00 0.00 0.00 1.94
161 162 3.159472 TGAGCTGGCTGATGAATGTTTT 58.841 40.909 0.00 0.00 0.00 2.43
162 163 2.799017 TGAGCTGGCTGATGAATGTTT 58.201 42.857 0.00 0.00 0.00 2.83
163 164 2.502142 TGAGCTGGCTGATGAATGTT 57.498 45.000 0.00 0.00 0.00 2.71
164 165 2.502142 TTGAGCTGGCTGATGAATGT 57.498 45.000 0.00 0.00 0.00 2.71
165 166 3.215151 AGATTGAGCTGGCTGATGAATG 58.785 45.455 0.00 0.00 0.00 2.67
166 167 3.136809 AGAGATTGAGCTGGCTGATGAAT 59.863 43.478 0.00 0.00 0.00 2.57
167 168 2.504585 AGAGATTGAGCTGGCTGATGAA 59.495 45.455 0.00 0.00 0.00 2.57
168 169 2.102757 GAGAGATTGAGCTGGCTGATGA 59.897 50.000 0.00 0.00 0.00 2.92
169 170 2.103432 AGAGAGATTGAGCTGGCTGATG 59.897 50.000 0.00 0.00 0.00 3.07
170 171 2.400573 AGAGAGATTGAGCTGGCTGAT 58.599 47.619 0.00 0.00 0.00 2.90
171 172 1.863325 AGAGAGATTGAGCTGGCTGA 58.137 50.000 0.00 0.00 0.00 4.26
172 173 2.957680 TCTAGAGAGATTGAGCTGGCTG 59.042 50.000 0.00 0.00 0.00 4.85
173 174 2.958355 GTCTAGAGAGATTGAGCTGGCT 59.042 50.000 0.00 0.00 33.14 4.75
174 175 2.287547 CGTCTAGAGAGATTGAGCTGGC 60.288 54.545 0.00 0.00 33.14 4.85
175 176 3.003275 GTCGTCTAGAGAGATTGAGCTGG 59.997 52.174 0.00 0.00 33.14 4.85
176 177 3.003275 GGTCGTCTAGAGAGATTGAGCTG 59.997 52.174 0.00 0.00 35.86 4.24
177 178 3.211045 GGTCGTCTAGAGAGATTGAGCT 58.789 50.000 0.00 0.00 35.86 4.09
178 179 2.292292 GGGTCGTCTAGAGAGATTGAGC 59.708 54.545 0.00 0.00 37.02 4.26
179 180 2.882137 GGGGTCGTCTAGAGAGATTGAG 59.118 54.545 0.00 0.00 33.14 3.02
180 181 2.510382 AGGGGTCGTCTAGAGAGATTGA 59.490 50.000 0.00 0.00 33.14 2.57
181 182 2.938838 AGGGGTCGTCTAGAGAGATTG 58.061 52.381 0.00 0.00 33.14 2.67
182 183 3.673543 AAGGGGTCGTCTAGAGAGATT 57.326 47.619 0.00 0.00 33.14 2.40
183 184 3.292460 CAAAGGGGTCGTCTAGAGAGAT 58.708 50.000 0.00 0.00 33.14 2.75
184 185 2.041350 ACAAAGGGGTCGTCTAGAGAGA 59.959 50.000 0.00 0.00 0.00 3.10
185 186 2.424246 GACAAAGGGGTCGTCTAGAGAG 59.576 54.545 0.00 0.00 0.00 3.20
186 187 2.444421 GACAAAGGGGTCGTCTAGAGA 58.556 52.381 0.00 0.00 0.00 3.10
187 188 1.477295 GGACAAAGGGGTCGTCTAGAG 59.523 57.143 0.00 0.00 38.70 2.43
188 189 1.076677 AGGACAAAGGGGTCGTCTAGA 59.923 52.381 0.00 0.00 38.70 2.43
189 190 1.204941 CAGGACAAAGGGGTCGTCTAG 59.795 57.143 0.00 0.00 38.70 2.43
190 191 1.263356 CAGGACAAAGGGGTCGTCTA 58.737 55.000 0.00 0.00 38.70 2.59
191 192 1.481056 CCAGGACAAAGGGGTCGTCT 61.481 60.000 0.00 0.00 38.70 4.18
192 193 1.003718 CCAGGACAAAGGGGTCGTC 60.004 63.158 0.00 0.00 38.70 4.20
193 194 3.157680 CCAGGACAAAGGGGTCGT 58.842 61.111 0.00 0.00 38.70 4.34
194 195 2.359975 GCCAGGACAAAGGGGTCG 60.360 66.667 0.00 0.00 38.70 4.79
195 196 2.035783 GGCCAGGACAAAGGGGTC 59.964 66.667 0.00 0.00 37.06 4.46
196 197 1.739608 AATGGCCAGGACAAAGGGGT 61.740 55.000 13.05 0.00 0.00 4.95
197 198 0.972471 GAATGGCCAGGACAAAGGGG 60.972 60.000 13.05 0.00 0.00 4.79
198 199 0.040204 AGAATGGCCAGGACAAAGGG 59.960 55.000 13.05 0.00 0.00 3.95
199 200 1.272092 TGAGAATGGCCAGGACAAAGG 60.272 52.381 13.05 0.00 0.00 3.11
200 201 2.089980 CTGAGAATGGCCAGGACAAAG 58.910 52.381 13.05 0.22 0.00 2.77
201 202 1.425066 ACTGAGAATGGCCAGGACAAA 59.575 47.619 13.05 0.00 34.85 2.83
202 203 1.003580 GACTGAGAATGGCCAGGACAA 59.996 52.381 13.05 0.00 34.85 3.18
203 204 0.615331 GACTGAGAATGGCCAGGACA 59.385 55.000 13.05 0.00 34.85 4.02
204 205 0.908198 AGACTGAGAATGGCCAGGAC 59.092 55.000 13.05 4.94 34.85 3.85
205 206 0.907486 CAGACTGAGAATGGCCAGGA 59.093 55.000 13.05 0.00 34.85 3.86
206 207 0.107312 CCAGACTGAGAATGGCCAGG 60.107 60.000 13.05 0.00 34.85 4.45
207 208 0.107312 CCCAGACTGAGAATGGCCAG 60.107 60.000 13.05 0.00 36.53 4.85
208 209 1.565390 CCCCAGACTGAGAATGGCCA 61.565 60.000 8.56 8.56 32.46 5.36
209 210 1.225704 CCCCAGACTGAGAATGGCC 59.774 63.158 3.32 0.00 32.46 5.36
210 211 1.225704 CCCCCAGACTGAGAATGGC 59.774 63.158 3.32 0.00 32.46 4.40
211 212 1.225704 GCCCCCAGACTGAGAATGG 59.774 63.158 3.32 0.00 0.00 3.16
212 213 0.179936 GAGCCCCCAGACTGAGAATG 59.820 60.000 3.32 0.00 0.00 2.67
213 214 1.333636 CGAGCCCCCAGACTGAGAAT 61.334 60.000 3.32 0.00 0.00 2.40
214 215 1.984570 CGAGCCCCCAGACTGAGAA 60.985 63.158 3.32 0.00 0.00 2.87
215 216 2.230189 ATCGAGCCCCCAGACTGAGA 62.230 60.000 3.32 0.00 0.00 3.27
216 217 0.468214 TATCGAGCCCCCAGACTGAG 60.468 60.000 3.32 0.00 0.00 3.35
217 218 0.188587 ATATCGAGCCCCCAGACTGA 59.811 55.000 3.32 0.00 0.00 3.41
218 219 0.605589 GATATCGAGCCCCCAGACTG 59.394 60.000 0.00 0.00 0.00 3.51
219 220 0.485099 AGATATCGAGCCCCCAGACT 59.515 55.000 0.00 0.00 0.00 3.24
220 221 1.001406 CAAGATATCGAGCCCCCAGAC 59.999 57.143 0.00 0.00 0.00 3.51
221 222 1.342074 CAAGATATCGAGCCCCCAGA 58.658 55.000 0.00 0.00 0.00 3.86
222 223 0.322975 CCAAGATATCGAGCCCCCAG 59.677 60.000 0.00 0.00 0.00 4.45
223 224 1.127567 CCCAAGATATCGAGCCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
224 225 1.679898 CCCAAGATATCGAGCCCCC 59.320 63.158 0.00 0.00 0.00 5.40
225 226 1.003233 GCCCAAGATATCGAGCCCC 60.003 63.158 0.00 0.00 0.00 5.80
226 227 1.003233 GGCCCAAGATATCGAGCCC 60.003 63.158 14.01 2.99 34.23 5.19
227 228 1.003233 GGGCCCAAGATATCGAGCC 60.003 63.158 19.95 15.73 39.73 4.70
228 229 1.003233 GGGGCCCAAGATATCGAGC 60.003 63.158 26.86 0.00 0.00 5.03
229 230 1.059913 AAGGGGCCCAAGATATCGAG 58.940 55.000 27.72 0.00 0.00 4.04
230 231 1.420138 GAAAGGGGCCCAAGATATCGA 59.580 52.381 27.72 0.00 0.00 3.59
231 232 1.545651 GGAAAGGGGCCCAAGATATCG 60.546 57.143 27.72 0.00 0.00 2.92
232 233 1.203063 GGGAAAGGGGCCCAAGATATC 60.203 57.143 27.72 12.14 45.31 1.63
233 234 0.860457 GGGAAAGGGGCCCAAGATAT 59.140 55.000 27.72 0.00 45.31 1.63
234 235 2.328051 GGGAAAGGGGCCCAAGATA 58.672 57.895 27.72 0.00 45.31 1.98
235 236 3.109596 GGGAAAGGGGCCCAAGAT 58.890 61.111 27.72 7.30 45.31 2.40
241 242 3.097162 ATCTCGGGGAAAGGGGCC 61.097 66.667 0.00 0.00 0.00 5.80
242 243 2.193248 CATCTCGGGGAAAGGGGC 59.807 66.667 0.00 0.00 0.00 5.80
243 244 1.527370 GACATCTCGGGGAAAGGGG 59.473 63.158 0.00 0.00 0.00 4.79
244 245 1.144057 CGACATCTCGGGGAAAGGG 59.856 63.158 0.00 0.00 36.16 3.95
245 246 4.835927 CGACATCTCGGGGAAAGG 57.164 61.111 0.00 0.00 36.16 3.11
253 254 0.464036 TCAAATCCCCCGACATCTCG 59.536 55.000 0.00 0.00 39.83 4.04
254 255 2.710096 TTCAAATCCCCCGACATCTC 57.290 50.000 0.00 0.00 0.00 2.75
255 256 3.203040 AGAATTCAAATCCCCCGACATCT 59.797 43.478 8.44 0.00 0.00 2.90
256 257 3.555966 AGAATTCAAATCCCCCGACATC 58.444 45.455 8.44 0.00 0.00 3.06
257 258 3.669939 AGAATTCAAATCCCCCGACAT 57.330 42.857 8.44 0.00 0.00 3.06
258 259 3.088532 CAAGAATTCAAATCCCCCGACA 58.911 45.455 8.44 0.00 0.00 4.35
259 260 3.089284 ACAAGAATTCAAATCCCCCGAC 58.911 45.455 8.44 0.00 0.00 4.79
260 261 3.449746 ACAAGAATTCAAATCCCCCGA 57.550 42.857 8.44 0.00 0.00 5.14
261 262 4.644685 ACATACAAGAATTCAAATCCCCCG 59.355 41.667 8.44 0.00 0.00 5.73
262 263 6.239036 GCTACATACAAGAATTCAAATCCCCC 60.239 42.308 8.44 0.00 0.00 5.40
263 264 6.321181 TGCTACATACAAGAATTCAAATCCCC 59.679 38.462 8.44 0.00 0.00 4.81
264 265 7.333528 TGCTACATACAAGAATTCAAATCCC 57.666 36.000 8.44 0.00 0.00 3.85
265 266 9.807649 AATTGCTACATACAAGAATTCAAATCC 57.192 29.630 8.44 0.00 0.00 3.01
268 269 9.624697 GTCAATTGCTACATACAAGAATTCAAA 57.375 29.630 8.44 0.00 0.00 2.69
269 270 8.791675 TGTCAATTGCTACATACAAGAATTCAA 58.208 29.630 8.44 0.00 0.00 2.69
270 271 8.334263 TGTCAATTGCTACATACAAGAATTCA 57.666 30.769 8.44 0.00 0.00 2.57
271 272 9.282247 CTTGTCAATTGCTACATACAAGAATTC 57.718 33.333 21.89 0.00 44.03 2.17
272 273 8.796475 ACTTGTCAATTGCTACATACAAGAATT 58.204 29.630 28.33 13.22 44.03 2.17
273 274 8.340618 ACTTGTCAATTGCTACATACAAGAAT 57.659 30.769 28.33 13.72 44.03 2.40
274 275 7.744087 ACTTGTCAATTGCTACATACAAGAA 57.256 32.000 28.33 5.35 44.03 2.52
275 276 7.744087 AACTTGTCAATTGCTACATACAAGA 57.256 32.000 28.33 5.21 44.03 3.02
276 277 9.891828 TTAAACTTGTCAATTGCTACATACAAG 57.108 29.630 23.49 23.49 45.76 3.16
281 282 9.816354 ACTTTTTAAACTTGTCAATTGCTACAT 57.184 25.926 0.00 0.00 0.00 2.29
282 283 9.081997 CACTTTTTAAACTTGTCAATTGCTACA 57.918 29.630 0.00 0.00 0.00 2.74
283 284 8.539674 CCACTTTTTAAACTTGTCAATTGCTAC 58.460 33.333 0.00 0.00 0.00 3.58
284 285 7.223777 GCCACTTTTTAAACTTGTCAATTGCTA 59.776 33.333 0.00 0.00 0.00 3.49
285 286 6.037062 GCCACTTTTTAAACTTGTCAATTGCT 59.963 34.615 0.00 0.00 0.00 3.91
286 287 6.191661 GCCACTTTTTAAACTTGTCAATTGC 58.808 36.000 0.00 0.00 0.00 3.56
287 288 6.538381 AGGCCACTTTTTAAACTTGTCAATTG 59.462 34.615 5.01 0.00 0.00 2.32
288 289 6.538381 CAGGCCACTTTTTAAACTTGTCAATT 59.462 34.615 5.01 0.00 0.00 2.32
289 290 6.048509 CAGGCCACTTTTTAAACTTGTCAAT 58.951 36.000 5.01 0.00 0.00 2.57
290 291 5.186021 TCAGGCCACTTTTTAAACTTGTCAA 59.814 36.000 5.01 0.00 0.00 3.18
291 292 4.707448 TCAGGCCACTTTTTAAACTTGTCA 59.293 37.500 5.01 0.00 0.00 3.58
292 293 5.257082 TCAGGCCACTTTTTAAACTTGTC 57.743 39.130 5.01 0.00 0.00 3.18
293 294 4.099419 CCTCAGGCCACTTTTTAAACTTGT 59.901 41.667 5.01 0.00 0.00 3.16
294 295 4.099419 ACCTCAGGCCACTTTTTAAACTTG 59.901 41.667 5.01 0.00 0.00 3.16
295 296 4.099419 CACCTCAGGCCACTTTTTAAACTT 59.901 41.667 5.01 0.00 0.00 2.66
296 297 3.636764 CACCTCAGGCCACTTTTTAAACT 59.363 43.478 5.01 0.00 0.00 2.66
297 298 3.243737 CCACCTCAGGCCACTTTTTAAAC 60.244 47.826 5.01 0.00 0.00 2.01
298 299 2.962421 CCACCTCAGGCCACTTTTTAAA 59.038 45.455 5.01 0.00 0.00 1.52
299 300 2.175931 TCCACCTCAGGCCACTTTTTAA 59.824 45.455 5.01 0.00 0.00 1.52
300 301 1.777878 TCCACCTCAGGCCACTTTTTA 59.222 47.619 5.01 0.00 0.00 1.52
301 302 0.555769 TCCACCTCAGGCCACTTTTT 59.444 50.000 5.01 0.00 0.00 1.94
302 303 0.111253 CTCCACCTCAGGCCACTTTT 59.889 55.000 5.01 0.00 0.00 2.27
303 304 1.763770 CTCCACCTCAGGCCACTTT 59.236 57.895 5.01 0.00 0.00 2.66
304 305 2.900106 GCTCCACCTCAGGCCACTT 61.900 63.158 5.01 0.00 0.00 3.16
305 306 3.325753 GCTCCACCTCAGGCCACT 61.326 66.667 5.01 0.00 0.00 4.00
306 307 4.416738 GGCTCCACCTCAGGCCAC 62.417 72.222 5.01 0.00 43.59 5.01
308 309 4.106925 CTGGCTCCACCTCAGGCC 62.107 72.222 0.00 0.00 44.31 5.19
309 310 3.325753 ACTGGCTCCACCTCAGGC 61.326 66.667 0.00 0.00 40.22 4.85
310 311 1.897225 CTCACTGGCTCCACCTCAGG 61.897 65.000 0.00 0.00 40.22 3.86
311 312 1.595882 CTCACTGGCTCCACCTCAG 59.404 63.158 0.00 0.00 40.22 3.35
312 313 1.915266 CCTCACTGGCTCCACCTCA 60.915 63.158 0.00 0.00 40.22 3.86
313 314 1.194781 TTCCTCACTGGCTCCACCTC 61.195 60.000 0.00 0.00 40.22 3.85
314 315 1.152030 TTCCTCACTGGCTCCACCT 60.152 57.895 0.00 0.00 40.22 4.00
315 316 1.298014 CTTCCTCACTGGCTCCACC 59.702 63.158 0.00 0.00 39.84 4.61
316 317 1.298014 CCTTCCTCACTGGCTCCAC 59.702 63.158 0.00 0.00 35.26 4.02
317 318 1.152030 ACCTTCCTCACTGGCTCCA 60.152 57.895 0.00 0.00 35.26 3.86
318 319 1.194781 TCACCTTCCTCACTGGCTCC 61.195 60.000 0.00 0.00 35.26 4.70
319 320 0.036858 GTCACCTTCCTCACTGGCTC 60.037 60.000 0.00 0.00 35.26 4.70
320 321 1.484444 GGTCACCTTCCTCACTGGCT 61.484 60.000 0.00 0.00 35.26 4.75
321 322 1.003233 GGTCACCTTCCTCACTGGC 60.003 63.158 0.00 0.00 35.26 4.85
322 323 1.293498 CGGTCACCTTCCTCACTGG 59.707 63.158 0.00 0.00 37.10 4.00
323 324 1.374758 GCGGTCACCTTCCTCACTG 60.375 63.158 0.00 0.00 0.00 3.66
324 325 1.837051 TGCGGTCACCTTCCTCACT 60.837 57.895 0.00 0.00 0.00 3.41
325 326 1.668151 GTGCGGTCACCTTCCTCAC 60.668 63.158 0.00 0.00 37.24 3.51
326 327 1.691195 TTGTGCGGTCACCTTCCTCA 61.691 55.000 0.00 0.00 42.46 3.86
327 328 0.321653 ATTGTGCGGTCACCTTCCTC 60.322 55.000 0.00 0.00 42.46 3.71
328 329 0.321653 GATTGTGCGGTCACCTTCCT 60.322 55.000 0.00 0.00 42.46 3.36
329 330 0.605319 TGATTGTGCGGTCACCTTCC 60.605 55.000 0.00 0.00 42.46 3.46
330 331 0.798776 CTGATTGTGCGGTCACCTTC 59.201 55.000 0.00 0.00 42.46 3.46
331 332 1.237285 GCTGATTGTGCGGTCACCTT 61.237 55.000 0.00 0.00 42.46 3.50
332 333 1.672356 GCTGATTGTGCGGTCACCT 60.672 57.895 0.00 0.00 42.46 4.00
333 334 1.672356 AGCTGATTGTGCGGTCACC 60.672 57.895 0.00 0.00 42.46 4.02
334 335 1.230635 ACAGCTGATTGTGCGGTCAC 61.231 55.000 23.35 0.00 43.40 3.67
335 336 1.071299 ACAGCTGATTGTGCGGTCA 59.929 52.632 23.35 0.00 33.96 4.02
336 337 1.790387 GACAGCTGATTGTGCGGTC 59.210 57.895 23.35 0.00 44.97 4.79
337 338 0.534877 TTGACAGCTGATTGTGCGGT 60.535 50.000 23.35 0.00 41.14 5.68
338 339 0.110056 GTTGACAGCTGATTGTGCGG 60.110 55.000 23.35 0.00 35.28 5.69
339 340 0.870393 AGTTGACAGCTGATTGTGCG 59.130 50.000 23.35 0.00 35.28 5.34
340 341 2.551459 AGAAGTTGACAGCTGATTGTGC 59.449 45.455 23.35 5.24 0.00 4.57
341 342 4.274214 TCAAGAAGTTGACAGCTGATTGTG 59.726 41.667 23.35 5.68 37.79 3.33
342 343 4.454678 TCAAGAAGTTGACAGCTGATTGT 58.545 39.130 23.35 0.00 37.79 2.71
343 344 5.428496 TTCAAGAAGTTGACAGCTGATTG 57.572 39.130 23.35 11.07 42.60 2.67
344 345 5.009410 CCTTTCAAGAAGTTGACAGCTGATT 59.991 40.000 23.35 6.65 42.60 2.57
345 346 4.518211 CCTTTCAAGAAGTTGACAGCTGAT 59.482 41.667 23.35 4.35 42.60 2.90
346 347 3.879295 CCTTTCAAGAAGTTGACAGCTGA 59.121 43.478 23.35 0.00 42.60 4.26
347 348 3.879295 TCCTTTCAAGAAGTTGACAGCTG 59.121 43.478 13.48 13.48 42.60 4.24
348 349 4.156455 TCCTTTCAAGAAGTTGACAGCT 57.844 40.909 0.00 0.00 42.60 4.24
349 350 5.218139 CAATCCTTTCAAGAAGTTGACAGC 58.782 41.667 0.00 0.00 42.60 4.40
350 351 5.300286 ACCAATCCTTTCAAGAAGTTGACAG 59.700 40.000 0.00 0.00 42.60 3.51
351 352 5.067674 CACCAATCCTTTCAAGAAGTTGACA 59.932 40.000 0.00 0.00 42.60 3.58
352 353 5.067805 ACACCAATCCTTTCAAGAAGTTGAC 59.932 40.000 0.00 0.00 42.60 3.18
353 354 5.067674 CACACCAATCCTTTCAAGAAGTTGA 59.932 40.000 0.00 0.00 41.13 3.18
354 355 5.284079 CACACCAATCCTTTCAAGAAGTTG 58.716 41.667 0.00 0.00 34.67 3.16
355 356 4.202151 GCACACCAATCCTTTCAAGAAGTT 60.202 41.667 0.00 0.00 0.00 2.66
356 357 3.319122 GCACACCAATCCTTTCAAGAAGT 59.681 43.478 0.00 0.00 0.00 3.01
357 358 3.305608 GGCACACCAATCCTTTCAAGAAG 60.306 47.826 0.00 0.00 35.26 2.85
358 359 2.627699 GGCACACCAATCCTTTCAAGAA 59.372 45.455 0.00 0.00 35.26 2.52
359 360 2.238521 GGCACACCAATCCTTTCAAGA 58.761 47.619 0.00 0.00 35.26 3.02
360 361 1.068333 CGGCACACCAATCCTTTCAAG 60.068 52.381 0.00 0.00 34.57 3.02
361 362 0.958091 CGGCACACCAATCCTTTCAA 59.042 50.000 0.00 0.00 34.57 2.69
362 363 0.893270 CCGGCACACCAATCCTTTCA 60.893 55.000 0.00 0.00 34.57 2.69
363 364 0.893727 ACCGGCACACCAATCCTTTC 60.894 55.000 0.00 0.00 34.57 2.62
364 365 0.469144 AACCGGCACACCAATCCTTT 60.469 50.000 0.00 0.00 34.57 3.11
365 366 0.469144 AAACCGGCACACCAATCCTT 60.469 50.000 0.00 0.00 34.57 3.36
366 367 1.152830 AAACCGGCACACCAATCCT 59.847 52.632 0.00 0.00 34.57 3.24
367 368 1.288752 CAAACCGGCACACCAATCC 59.711 57.895 0.00 0.00 34.57 3.01
368 369 1.175983 TCCAAACCGGCACACCAATC 61.176 55.000 0.00 0.00 34.57 2.67
369 370 1.152652 TCCAAACCGGCACACCAAT 60.153 52.632 0.00 0.00 34.57 3.16
370 371 1.826054 CTCCAAACCGGCACACCAA 60.826 57.895 0.00 0.00 34.57 3.67
371 372 1.697082 TACTCCAAACCGGCACACCA 61.697 55.000 0.00 0.00 34.57 4.17
372 373 1.071814 TACTCCAAACCGGCACACC 59.928 57.895 0.00 0.00 33.14 4.16
373 374 1.232621 GGTACTCCAAACCGGCACAC 61.233 60.000 0.00 0.00 33.14 3.82
374 375 1.071814 GGTACTCCAAACCGGCACA 59.928 57.895 0.00 0.00 33.14 4.57
375 376 1.673337 GGGTACTCCAAACCGGCAC 60.673 63.158 0.00 0.00 37.93 5.01
376 377 2.148052 TGGGTACTCCAAACCGGCA 61.148 57.895 0.00 0.00 43.84 5.69
377 378 2.751688 TGGGTACTCCAAACCGGC 59.248 61.111 0.00 0.00 43.84 6.13
383 384 9.360911 CAGTAATCACTCTGTTGGGTACTCCAA 62.361 44.444 10.67 10.67 42.45 3.53
384 385 2.391926 TCACTCTGTTGGGTACTCCA 57.608 50.000 0.00 0.00 45.43 3.86
385 386 3.983044 AATCACTCTGTTGGGTACTCC 57.017 47.619 0.00 0.00 0.00 3.85
386 387 5.185249 TCAGTAATCACTCTGTTGGGTACTC 59.815 44.000 0.00 0.00 30.46 2.59
387 388 5.047235 GTCAGTAATCACTCTGTTGGGTACT 60.047 44.000 0.00 0.00 30.46 2.73
388 389 5.169295 GTCAGTAATCACTCTGTTGGGTAC 58.831 45.833 0.00 0.00 30.46 3.34
389 390 4.836175 TGTCAGTAATCACTCTGTTGGGTA 59.164 41.667 0.00 0.00 30.46 3.69
390 391 3.646162 TGTCAGTAATCACTCTGTTGGGT 59.354 43.478 0.00 0.00 30.46 4.51
391 392 4.271696 TGTCAGTAATCACTCTGTTGGG 57.728 45.455 0.00 0.00 30.46 4.12
392 393 4.150627 CGTTGTCAGTAATCACTCTGTTGG 59.849 45.833 0.00 0.00 30.46 3.77
393 394 4.150627 CCGTTGTCAGTAATCACTCTGTTG 59.849 45.833 0.00 0.00 30.46 3.33
394 395 4.307432 CCGTTGTCAGTAATCACTCTGTT 58.693 43.478 0.00 0.00 30.46 3.16
395 396 3.861131 GCCGTTGTCAGTAATCACTCTGT 60.861 47.826 0.00 0.00 30.46 3.41
396 397 2.668457 GCCGTTGTCAGTAATCACTCTG 59.332 50.000 0.00 0.00 30.46 3.35
397 398 2.299013 TGCCGTTGTCAGTAATCACTCT 59.701 45.455 0.00 0.00 30.46 3.24
398 399 2.412089 GTGCCGTTGTCAGTAATCACTC 59.588 50.000 0.00 0.00 30.46 3.51
399 400 2.413837 GTGCCGTTGTCAGTAATCACT 58.586 47.619 0.00 0.00 34.42 3.41
400 401 1.463444 GGTGCCGTTGTCAGTAATCAC 59.537 52.381 0.00 0.00 0.00 3.06
401 402 1.803334 GGTGCCGTTGTCAGTAATCA 58.197 50.000 0.00 0.00 0.00 2.57
402 403 0.719465 CGGTGCCGTTGTCAGTAATC 59.281 55.000 1.93 0.00 34.35 1.75
403 404 0.319083 TCGGTGCCGTTGTCAGTAAT 59.681 50.000 10.60 0.00 40.74 1.89
404 405 0.319211 CTCGGTGCCGTTGTCAGTAA 60.319 55.000 10.60 0.00 40.74 2.24
405 406 1.287815 CTCGGTGCCGTTGTCAGTA 59.712 57.895 10.60 0.00 40.74 2.74
406 407 2.029073 CTCGGTGCCGTTGTCAGT 59.971 61.111 10.60 0.00 40.74 3.41
407 408 1.557443 GAACTCGGTGCCGTTGTCAG 61.557 60.000 10.60 2.85 40.74 3.51
408 409 1.593209 GAACTCGGTGCCGTTGTCA 60.593 57.895 10.60 0.00 40.74 3.58
409 410 0.949105 ATGAACTCGGTGCCGTTGTC 60.949 55.000 10.60 6.83 40.74 3.18
410 411 1.070786 ATGAACTCGGTGCCGTTGT 59.929 52.632 10.60 8.12 40.74 3.32
411 412 0.948623 TCATGAACTCGGTGCCGTTG 60.949 55.000 10.60 7.53 40.74 4.10
412 413 0.670546 CTCATGAACTCGGTGCCGTT 60.671 55.000 10.60 0.00 40.74 4.44
413 414 1.079819 CTCATGAACTCGGTGCCGT 60.080 57.895 10.60 0.00 40.74 5.68
414 415 2.456119 GCTCATGAACTCGGTGCCG 61.456 63.158 3.94 3.94 41.35 5.69
415 416 1.078848 AGCTCATGAACTCGGTGCC 60.079 57.895 0.00 0.00 0.00 5.01
416 417 1.975363 GCAGCTCATGAACTCGGTGC 61.975 60.000 17.56 17.56 42.50 5.01
417 418 0.671472 TGCAGCTCATGAACTCGGTG 60.671 55.000 7.34 7.34 0.00 4.94
418 419 0.671781 GTGCAGCTCATGAACTCGGT 60.672 55.000 0.00 0.00 34.17 4.69
419 420 0.671472 TGTGCAGCTCATGAACTCGG 60.671 55.000 0.00 0.00 38.44 4.63
420 421 0.441533 GTGTGCAGCTCATGAACTCG 59.558 55.000 0.00 0.00 38.44 4.18
421 422 1.805869 AGTGTGCAGCTCATGAACTC 58.194 50.000 0.00 0.00 38.44 3.01
422 423 2.037641 TGTAGTGTGCAGCTCATGAACT 59.962 45.455 0.00 0.00 38.44 3.01
423 424 2.158449 GTGTAGTGTGCAGCTCATGAAC 59.842 50.000 0.00 0.00 38.06 3.18
424 425 2.416747 GTGTAGTGTGCAGCTCATGAA 58.583 47.619 0.00 0.00 0.00 2.57
425 426 1.338105 GGTGTAGTGTGCAGCTCATGA 60.338 52.381 0.00 0.00 0.00 3.07
426 427 1.081892 GGTGTAGTGTGCAGCTCATG 58.918 55.000 0.00 0.00 0.00 3.07
427 428 0.686789 TGGTGTAGTGTGCAGCTCAT 59.313 50.000 0.00 0.00 35.60 2.90
428 429 0.249868 GTGGTGTAGTGTGCAGCTCA 60.250 55.000 0.00 0.00 35.60 4.26
429 430 1.284982 CGTGGTGTAGTGTGCAGCTC 61.285 60.000 0.00 0.00 35.60 4.09
430 431 1.300931 CGTGGTGTAGTGTGCAGCT 60.301 57.895 0.00 0.00 35.60 4.24
431 432 1.300620 TCGTGGTGTAGTGTGCAGC 60.301 57.895 0.00 0.00 35.19 5.25
432 433 0.249280 TGTCGTGGTGTAGTGTGCAG 60.249 55.000 0.00 0.00 0.00 4.41
433 434 0.528901 GTGTCGTGGTGTAGTGTGCA 60.529 55.000 0.00 0.00 0.00 4.57
434 435 0.249322 AGTGTCGTGGTGTAGTGTGC 60.249 55.000 0.00 0.00 0.00 4.57
435 436 2.033675 TGTAGTGTCGTGGTGTAGTGTG 59.966 50.000 0.00 0.00 0.00 3.82
557 559 5.483811 TGAGTTTTGGCGACAGATAATGTA 58.516 37.500 0.00 0.00 44.17 2.29
620 622 2.343544 GCGACACACAAATAGACGGTAC 59.656 50.000 0.00 0.00 0.00 3.34
652 654 3.974871 ACGCCGATACTTTTTGTGTTT 57.025 38.095 0.00 0.00 0.00 2.83
653 655 3.974871 AACGCCGATACTTTTTGTGTT 57.025 38.095 0.00 0.00 0.00 3.32
665 667 1.745489 GGCTGAAGGAAACGCCGAT 60.745 57.895 0.00 0.00 43.43 4.18
730 736 1.969064 TGCGAATCGGGTGTTTGGG 60.969 57.895 4.35 0.00 0.00 4.12
781 802 2.037527 GGTCAGGGTCGAGGGTCT 59.962 66.667 0.00 0.00 0.00 3.85
794 817 1.209504 GATTGGGGATCGAACAGGTCA 59.790 52.381 0.00 0.00 0.00 4.02
818 851 5.047021 CGAGATAGAGAGAGAGAGGTGAGAT 60.047 48.000 0.00 0.00 0.00 2.75
819 852 4.280929 CGAGATAGAGAGAGAGAGGTGAGA 59.719 50.000 0.00 0.00 0.00 3.27
821 854 3.244078 GCGAGATAGAGAGAGAGAGGTGA 60.244 52.174 0.00 0.00 0.00 4.02
823 856 2.038557 GGCGAGATAGAGAGAGAGAGGT 59.961 54.545 0.00 0.00 0.00 3.85
826 859 2.224426 GGTGGCGAGATAGAGAGAGAGA 60.224 54.545 0.00 0.00 0.00 3.10
853 898 1.556475 GGTTAGGGTTAGGGTCAGGGT 60.556 57.143 0.00 0.00 0.00 4.34
854 899 1.210538 GGTTAGGGTTAGGGTCAGGG 58.789 60.000 0.00 0.00 0.00 4.45
855 900 1.210538 GGGTTAGGGTTAGGGTCAGG 58.789 60.000 0.00 0.00 0.00 3.86
856 901 0.828677 CGGGTTAGGGTTAGGGTCAG 59.171 60.000 0.00 0.00 0.00 3.51
857 902 0.413037 TCGGGTTAGGGTTAGGGTCA 59.587 55.000 0.00 0.00 0.00 4.02
858 903 0.826715 GTCGGGTTAGGGTTAGGGTC 59.173 60.000 0.00 0.00 0.00 4.46
958 1011 0.686769 GCGGACTAAGGGAAGGGAGA 60.687 60.000 0.00 0.00 0.00 3.71
1107 1163 2.947532 CGGGCTGCTCCTCAACAGA 61.948 63.158 0.00 0.00 35.90 3.41
1252 1326 6.127897 GCAAGGCATACCATCTATAAACCATC 60.128 42.308 0.00 0.00 39.06 3.51
1317 1401 2.058829 GAACAACGCCACACCACTGG 62.059 60.000 0.00 0.00 0.00 4.00
1364 1449 2.578021 ACAGTAGCACTTCCCATCCAAT 59.422 45.455 0.00 0.00 0.00 3.16
1376 1461 2.327200 GGGGGTCAATACAGTAGCAC 57.673 55.000 0.00 0.00 0.00 4.40
1393 1478 5.880887 GTGTTGATACTCCTTTCTTTAGGGG 59.119 44.000 0.00 0.00 41.89 4.79
1394 1479 6.472887 TGTGTTGATACTCCTTTCTTTAGGG 58.527 40.000 0.00 0.00 35.90 3.53
1396 1481 8.378172 TGTTGTGTTGATACTCCTTTCTTTAG 57.622 34.615 0.00 0.00 0.00 1.85
1397 1482 8.918202 ATGTTGTGTTGATACTCCTTTCTTTA 57.082 30.769 0.00 0.00 0.00 1.85
1401 1487 7.667043 TGTATGTTGTGTTGATACTCCTTTC 57.333 36.000 0.00 0.00 0.00 2.62
1566 1760 0.032130 CTGCGGCGATACAGTATGGT 59.968 55.000 12.98 0.00 43.62 3.55
1594 1790 6.825610 AGTTATTTTTCACAATCCCTGCAAA 58.174 32.000 0.00 0.00 0.00 3.68
1723 1951 6.942532 TTCTTTGAGAAATTGTAGCAGTGT 57.057 33.333 0.00 0.00 29.99 3.55
1814 2055 7.976414 ATGAACATTCCTTCCATCCATTTAA 57.024 32.000 0.00 0.00 0.00 1.52
2188 4949 3.573538 AGTAATGGTTGTGCATGAAAGCA 59.426 39.130 12.16 12.16 43.35 3.91
2194 4955 7.087409 TCTTATTGAGTAATGGTTGTGCATG 57.913 36.000 0.00 0.00 0.00 4.06
2270 5031 4.578928 GGCAACTTACAAGAAGACCTTTCA 59.421 41.667 0.00 0.00 31.42 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.