Multiple sequence alignment - TraesCS5A01G122400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G122400 chr5A 100.000 3756 0 0 1 3756 267003634 267007389 0.000000e+00 6937.0
1 TraesCS5A01G122400 chr5A 100.000 229 0 0 3992 4220 267007625 267007853 1.400000e-114 424.0
2 TraesCS5A01G122400 chr5D 93.962 3710 149 27 3 3666 207177169 207180849 0.000000e+00 5541.0
3 TraesCS5A01G122400 chr5D 93.846 65 1 3 4157 4220 61306571 61306509 1.250000e-15 95.3
4 TraesCS5A01G122400 chr5D 88.158 76 3 2 3686 3755 207180850 207180925 7.520000e-13 86.1
5 TraesCS5A01G122400 chr5B 95.208 2692 83 17 549 3224 220583076 220580415 0.000000e+00 4215.0
6 TraesCS5A01G122400 chr5B 86.747 332 14 16 3210 3528 220580396 220580082 4.040000e-90 342.0
7 TraesCS5A01G122400 chr5B 87.940 199 14 2 3561 3755 220573116 220572924 4.250000e-55 226.0
8 TraesCS5A01G122400 chr5B 88.372 86 10 0 3992 4077 220572843 220572758 2.080000e-18 104.0
9 TraesCS5A01G122400 chr4D 82.885 1338 200 20 1890 3202 88906030 88904697 0.000000e+00 1175.0
10 TraesCS5A01G122400 chr4D 98.214 56 0 1 4165 4220 117778848 117778794 3.470000e-16 97.1
11 TraesCS5A01G122400 chr4A 82.728 1349 204 17 1879 3202 501639604 501638260 0.000000e+00 1173.0
12 TraesCS5A01G122400 chr4A 98.182 55 1 0 4166 4220 531776824 531776878 3.470000e-16 97.1
13 TraesCS5A01G122400 chr4B 82.362 1338 207 21 1890 3202 125681273 125679940 0.000000e+00 1136.0
14 TraesCS5A01G122400 chr3D 100.000 54 0 0 4167 4220 431830162 431830109 2.680000e-17 100.0
15 TraesCS5A01G122400 chr3D 88.000 75 5 2 1336 1407 286722817 286722744 7.520000e-13 86.1
16 TraesCS5A01G122400 chr7D 98.182 55 1 0 4166 4220 214134454 214134508 3.470000e-16 97.1
17 TraesCS5A01G122400 chr7D 87.179 78 6 2 1333 1407 174810339 174810415 7.520000e-13 86.1
18 TraesCS5A01G122400 chr2A 95.000 60 1 2 4161 4220 619074761 619074704 4.490000e-15 93.5
19 TraesCS5A01G122400 chr3A 97.917 48 1 0 4173 4220 501209803 501209756 2.700000e-12 84.2
20 TraesCS5A01G122400 chr3A 97.917 48 1 0 4173 4220 501211071 501211024 2.700000e-12 84.2
21 TraesCS5A01G122400 chr3A 97.917 48 1 0 4173 4220 501214874 501214827 2.700000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G122400 chr5A 267003634 267007853 4219 False 3680.50 6937 100.0000 1 4220 2 chr5A.!!$F1 4219
1 TraesCS5A01G122400 chr5D 207177169 207180925 3756 False 2813.55 5541 91.0600 3 3755 2 chr5D.!!$F1 3752
2 TraesCS5A01G122400 chr5B 220580082 220583076 2994 True 2278.50 4215 90.9775 549 3528 2 chr5B.!!$R2 2979
3 TraesCS5A01G122400 chr4D 88904697 88906030 1333 True 1175.00 1175 82.8850 1890 3202 1 chr4D.!!$R1 1312
4 TraesCS5A01G122400 chr4A 501638260 501639604 1344 True 1173.00 1173 82.7280 1879 3202 1 chr4A.!!$R1 1323
5 TraesCS5A01G122400 chr4B 125679940 125681273 1333 True 1136.00 1136 82.3620 1890 3202 1 chr4B.!!$R1 1312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 640 0.321919 AGTAGTCAGTGTACGGCCGA 60.322 55.0 35.9 13.31 0.00 5.54 F
1214 1238 0.659957 GCCATTCTCTTGCCACGATC 59.340 55.0 0.0 0.00 0.00 3.69 F
1778 1805 0.318762 AAGACGGAGACCTGCAAGTC 59.681 55.0 7.4 7.40 37.01 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1789 1.251527 ATCGACTTGCAGGTCTCCGT 61.252 55.0 24.46 6.87 34.38 4.69 R
2731 2779 0.035036 TACCGCCCGTTGTTCATCAA 59.965 50.0 0.00 0.00 0.00 2.57 R
3680 3774 0.319211 ACTTCGACGCCGTCAATGAA 60.319 50.0 18.40 11.42 37.05 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.424566 GGACGAAGCGCCCGTACA 62.425 66.667 24.53 0.00 40.38 2.90
45 46 2.677971 GTACATGCTGTGCGGTAGG 58.322 57.895 0.00 0.00 0.00 3.18
59 60 0.614134 GGTAGGGACACCGACTCCTT 60.614 60.000 0.00 0.00 41.59 3.36
70 71 1.289380 GACTCCTTCTTGACGCGGT 59.711 57.895 12.47 0.00 0.00 5.68
71 72 1.006102 ACTCCTTCTTGACGCGGTG 60.006 57.895 12.47 0.00 0.00 4.94
129 131 4.184439 TGTGCGACAGGGACACTA 57.816 55.556 0.00 0.00 42.55 2.74
143 145 2.099427 GGACACTAGCTCCTCCTTAACG 59.901 54.545 0.00 0.00 0.00 3.18
155 157 4.973055 TTAACGTGGCGGCGCAGT 62.973 61.111 34.36 25.49 34.88 4.40
195 197 3.499737 CGCAACGGTCTCATGGCC 61.500 66.667 0.00 0.00 0.00 5.36
200 202 4.812476 CGGTCTCATGGCCGCGAA 62.812 66.667 8.23 0.00 41.53 4.70
206 208 3.957535 CATGGCCGCGAAGATGCC 61.958 66.667 8.23 12.71 44.37 4.40
213 215 3.272334 GCGAAGATGCCGCCGAAT 61.272 61.111 0.00 0.00 46.22 3.34
261 263 2.974698 GCTCAAGCTGCCACACGT 60.975 61.111 0.00 0.00 38.21 4.49
273 275 0.677288 CCACACGTACTCCTTGTCCA 59.323 55.000 0.00 0.00 0.00 4.02
274 276 1.604693 CCACACGTACTCCTTGTCCAC 60.605 57.143 0.00 0.00 0.00 4.02
275 277 1.067974 CACACGTACTCCTTGTCCACA 59.932 52.381 0.00 0.00 0.00 4.17
300 304 3.605946 CTCAGCTAGGAGGAGGTGT 57.394 57.895 2.86 0.00 43.83 4.16
328 332 2.166130 TTGCTCCTCGCCATCGTCAA 62.166 55.000 0.00 0.00 38.05 3.18
405 409 2.815308 GCCATGATCCGGACGACT 59.185 61.111 6.12 0.00 0.00 4.18
406 410 1.144057 GCCATGATCCGGACGACTT 59.856 57.895 6.12 0.00 0.00 3.01
407 411 0.462047 GCCATGATCCGGACGACTTT 60.462 55.000 6.12 0.00 0.00 2.66
408 412 1.290203 CCATGATCCGGACGACTTTG 58.710 55.000 6.12 0.00 0.00 2.77
410 414 1.134818 CATGATCCGGACGACTTTGGA 60.135 52.381 6.12 0.00 34.45 3.53
421 426 1.692411 GACTTTGGAAACCACCTGCT 58.308 50.000 0.00 0.00 30.78 4.24
438 443 1.302832 CTGGCACTGAGAACCACCC 60.303 63.158 0.00 0.00 0.00 4.61
450 455 1.645402 AACCACCCTGAGCCACAACT 61.645 55.000 0.00 0.00 0.00 3.16
464 469 1.205417 CACAACTGGATTTGCCCATCC 59.795 52.381 4.57 4.57 43.03 3.51
487 492 2.646175 GGTGTGCGTAGGAGAGGCA 61.646 63.158 0.00 0.00 46.42 4.75
519 524 1.227383 GGAGATGGGGTTTGCCGAT 59.773 57.895 0.00 0.00 34.97 4.18
621 626 3.350219 ACCGGCATGAATTCAAGTAGT 57.650 42.857 13.09 4.59 0.00 2.73
626 631 4.201753 CGGCATGAATTCAAGTAGTCAGTG 60.202 45.833 13.09 3.93 0.00 3.66
628 633 5.874810 GGCATGAATTCAAGTAGTCAGTGTA 59.125 40.000 13.09 0.00 0.00 2.90
629 634 6.183360 GGCATGAATTCAAGTAGTCAGTGTAC 60.183 42.308 13.09 0.00 0.00 2.90
630 635 6.454318 GCATGAATTCAAGTAGTCAGTGTACG 60.454 42.308 13.09 0.00 0.00 3.67
633 638 1.542915 TCAAGTAGTCAGTGTACGGCC 59.457 52.381 0.00 0.00 0.00 6.13
635 640 0.321919 AGTAGTCAGTGTACGGCCGA 60.322 55.000 35.90 13.31 0.00 5.54
636 641 0.737219 GTAGTCAGTGTACGGCCGAT 59.263 55.000 35.90 18.92 0.00 4.18
654 672 2.825532 CGATGAGGGTTTTGGGTGAAAT 59.174 45.455 0.00 0.00 0.00 2.17
655 673 3.258123 CGATGAGGGTTTTGGGTGAAATT 59.742 43.478 0.00 0.00 0.00 1.82
690 708 5.204673 GTCTACATGACGGACATTTGAAC 57.795 43.478 0.00 0.00 37.07 3.18
691 709 4.688879 GTCTACATGACGGACATTTGAACA 59.311 41.667 0.00 0.00 37.07 3.18
692 710 5.351465 GTCTACATGACGGACATTTGAACAT 59.649 40.000 0.00 0.00 37.07 2.71
744 762 6.528423 CGATTTATGGGATTTTAAACGTGCAA 59.472 34.615 0.00 0.00 0.00 4.08
778 796 5.005394 CGGACATTTGATACACGAGTAAAGG 59.995 44.000 0.00 0.00 33.13 3.11
787 805 6.830324 TGATACACGAGTAAAGGTACACCTAT 59.170 38.462 0.25 0.00 38.01 2.57
828 846 2.234300 ACGTACCATCCTATTTGGCG 57.766 50.000 0.00 0.00 37.81 5.69
835 853 2.099098 CCATCCTATTTGGCGGTTTCAC 59.901 50.000 0.00 0.00 35.26 3.18
920 944 6.830324 GGGAAAGGGATTTACGTAGGTTTATT 59.170 38.462 0.00 0.00 0.00 1.40
921 945 7.992608 GGGAAAGGGATTTACGTAGGTTTATTA 59.007 37.037 0.00 0.00 0.00 0.98
976 1000 4.567558 TCGTTGATACAACGTGTTTGAACT 59.432 37.500 27.40 0.00 43.47 3.01
1000 1024 1.135527 CGGTGGAGACATTTAGGCGTA 59.864 52.381 0.00 0.00 46.14 4.42
1002 1026 3.131396 GGTGGAGACATTTAGGCGTATG 58.869 50.000 0.00 0.00 46.14 2.39
1044 1068 3.096489 GCCATAAGCAGAGTCAGAGAG 57.904 52.381 0.00 0.00 42.97 3.20
1045 1069 2.692557 GCCATAAGCAGAGTCAGAGAGA 59.307 50.000 0.00 0.00 42.97 3.10
1046 1070 3.490761 GCCATAAGCAGAGTCAGAGAGAC 60.491 52.174 0.00 0.00 44.25 3.36
1047 1071 6.789549 GCCATAAGCAGAGTCAGAGAGACG 62.790 54.167 0.00 0.00 46.67 4.18
1169 1193 2.742053 CGGACCACCAACAACTATTGAG 59.258 50.000 0.00 0.00 35.59 3.02
1209 1233 0.811219 CGATCGCCATTCTCTTGCCA 60.811 55.000 0.26 0.00 0.00 4.92
1214 1238 0.659957 GCCATTCTCTTGCCACGATC 59.340 55.000 0.00 0.00 0.00 3.69
1407 1434 2.766400 GGAGGAGTGCGAGGACGAG 61.766 68.421 0.00 0.00 42.66 4.18
1676 1703 2.358737 GGCCAGCAGCAAGTACGT 60.359 61.111 0.00 0.00 46.50 3.57
1762 1789 4.441695 CGCTGCTCGAGCCCAAGA 62.442 66.667 33.23 14.43 46.01 3.02
1767 1794 2.492090 CTCGAGCCCAAGACGGAG 59.508 66.667 0.00 0.00 36.56 4.63
1778 1805 0.318762 AAGACGGAGACCTGCAAGTC 59.681 55.000 7.40 7.40 37.01 3.01
1897 1924 3.740397 CGTACACGCCGGAGACCA 61.740 66.667 13.83 0.00 0.00 4.02
2127 2154 1.811266 CATCAACGTGGGCCTCTCG 60.811 63.158 4.53 9.87 38.22 4.04
2731 2779 1.224039 GCCCTGAGCAGCATCTTCT 59.776 57.895 0.00 0.00 42.97 2.85
3395 3487 9.503399 AGAAAAGAATGTTACTCTAAATCGGTT 57.497 29.630 0.00 0.00 0.00 4.44
3442 3534 3.388308 CGTTTCTCAGGGCAGATAGATG 58.612 50.000 0.00 0.00 0.00 2.90
3453 3545 7.841222 TCAGGGCAGATAGATGTATGTATGTAT 59.159 37.037 0.00 0.00 0.00 2.29
3528 3622 9.121517 CTTGCGAATCATATGTATTTTTCATCC 57.878 33.333 1.90 0.00 0.00 3.51
3565 3659 8.078596 GGAGTAATACAAATGCTGGAATTCATC 58.921 37.037 7.93 0.00 0.00 2.92
3574 3668 3.503363 TGCTGGAATTCATCGGCATTATC 59.497 43.478 12.55 0.00 34.22 1.75
3587 3681 2.100584 GGCATTATCGCATTGTTTCCCA 59.899 45.455 0.00 0.00 0.00 4.37
3605 3699 7.094075 TGTTTCCCAAGATGAGAGAAATTCATG 60.094 37.037 0.00 0.00 35.50 3.07
3610 3704 6.266323 CAAGATGAGAGAAATTCATGCCAAG 58.734 40.000 0.00 0.00 35.50 3.61
3614 3708 5.072055 TGAGAGAAATTCATGCCAAGAACA 58.928 37.500 0.00 0.00 0.00 3.18
3636 3730 5.647658 ACATGCAGGTTTTAGAATTCATCGA 59.352 36.000 8.44 0.00 0.00 3.59
3640 3734 6.150976 TGCAGGTTTTAGAATTCATCGACAAT 59.849 34.615 8.44 0.00 0.00 2.71
3642 3736 7.542130 GCAGGTTTTAGAATTCATCGACAATTT 59.458 33.333 8.44 0.97 0.00 1.82
3668 3762 9.694137 TTTTTGTCTCCGTTTTAGAAAAAGAAA 57.306 25.926 2.73 0.00 32.99 2.52
3669 3763 9.694137 TTTTGTCTCCGTTTTAGAAAAAGAAAA 57.306 25.926 2.73 0.00 32.99 2.29
3670 3764 9.863845 TTTGTCTCCGTTTTAGAAAAAGAAAAT 57.136 25.926 2.73 0.00 28.99 1.82
3671 3765 9.511144 TTGTCTCCGTTTTAGAAAAAGAAAATC 57.489 29.630 2.73 0.00 30.46 2.17
3672 3766 8.899771 TGTCTCCGTTTTAGAAAAAGAAAATCT 58.100 29.630 2.73 0.00 30.46 2.40
3673 3767 9.170584 GTCTCCGTTTTAGAAAAAGAAAATCTG 57.829 33.333 2.73 0.00 30.46 2.90
3674 3768 9.116067 TCTCCGTTTTAGAAAAAGAAAATCTGA 57.884 29.630 2.73 0.00 30.46 3.27
3675 3769 9.170584 CTCCGTTTTAGAAAAAGAAAATCTGAC 57.829 33.333 2.73 0.00 30.46 3.51
3676 3770 8.679100 TCCGTTTTAGAAAAAGAAAATCTGACA 58.321 29.630 2.73 0.00 30.46 3.58
3677 3771 9.296400 CCGTTTTAGAAAAAGAAAATCTGACAA 57.704 29.630 2.73 0.00 30.46 3.18
3715 3809 3.188460 TCGAAGTTTGCTCCTATGTTTGC 59.812 43.478 0.00 0.00 0.00 3.68
3717 3811 4.479619 GAAGTTTGCTCCTATGTTTGCTG 58.520 43.478 0.00 0.00 0.00 4.41
3718 3812 3.754965 AGTTTGCTCCTATGTTTGCTGA 58.245 40.909 0.00 0.00 0.00 4.26
3719 3813 3.755378 AGTTTGCTCCTATGTTTGCTGAG 59.245 43.478 0.00 0.00 0.00 3.35
3720 3814 3.701205 TTGCTCCTATGTTTGCTGAGA 57.299 42.857 0.00 0.00 0.00 3.27
3721 3815 3.701205 TGCTCCTATGTTTGCTGAGAA 57.299 42.857 0.00 0.00 0.00 2.87
3723 3817 4.397420 TGCTCCTATGTTTGCTGAGAAAA 58.603 39.130 0.00 0.00 0.00 2.29
3724 3818 5.012239 TGCTCCTATGTTTGCTGAGAAAAT 58.988 37.500 0.00 0.00 0.00 1.82
3729 3829 9.727627 CTCCTATGTTTGCTGAGAAAATAAATC 57.272 33.333 0.00 0.00 0.00 2.17
3742 3842 9.123902 TGAGAAAATAAATCCATCGTCATCATT 57.876 29.630 0.00 0.00 0.00 2.57
3755 3855 3.614092 GTCATCATTCTCCCTGAGCAAA 58.386 45.455 0.00 0.00 0.00 3.68
4012 4112 2.561569 AGCCACAACAATATCTACGCC 58.438 47.619 0.00 0.00 0.00 5.68
4013 4113 2.093181 AGCCACAACAATATCTACGCCA 60.093 45.455 0.00 0.00 0.00 5.69
4014 4114 2.680841 GCCACAACAATATCTACGCCAA 59.319 45.455 0.00 0.00 0.00 4.52
4015 4115 3.315191 GCCACAACAATATCTACGCCAAT 59.685 43.478 0.00 0.00 0.00 3.16
4016 4116 4.554723 GCCACAACAATATCTACGCCAATC 60.555 45.833 0.00 0.00 0.00 2.67
4017 4117 4.574421 CCACAACAATATCTACGCCAATCA 59.426 41.667 0.00 0.00 0.00 2.57
4018 4118 5.501715 CACAACAATATCTACGCCAATCAC 58.498 41.667 0.00 0.00 0.00 3.06
4019 4119 5.294306 CACAACAATATCTACGCCAATCACT 59.706 40.000 0.00 0.00 0.00 3.41
4020 4120 5.523916 ACAACAATATCTACGCCAATCACTC 59.476 40.000 0.00 0.00 0.00 3.51
4021 4121 5.276461 ACAATATCTACGCCAATCACTCA 57.724 39.130 0.00 0.00 0.00 3.41
4022 4122 5.670485 ACAATATCTACGCCAATCACTCAA 58.330 37.500 0.00 0.00 0.00 3.02
4023 4123 5.523916 ACAATATCTACGCCAATCACTCAAC 59.476 40.000 0.00 0.00 0.00 3.18
4024 4124 2.380084 TCTACGCCAATCACTCAACC 57.620 50.000 0.00 0.00 0.00 3.77
4025 4125 1.621317 TCTACGCCAATCACTCAACCA 59.379 47.619 0.00 0.00 0.00 3.67
4026 4126 1.732259 CTACGCCAATCACTCAACCAC 59.268 52.381 0.00 0.00 0.00 4.16
4027 4127 0.889186 ACGCCAATCACTCAACCACC 60.889 55.000 0.00 0.00 0.00 4.61
4028 4128 0.606401 CGCCAATCACTCAACCACCT 60.606 55.000 0.00 0.00 0.00 4.00
4029 4129 0.883833 GCCAATCACTCAACCACCTG 59.116 55.000 0.00 0.00 0.00 4.00
4030 4130 0.883833 CCAATCACTCAACCACCTGC 59.116 55.000 0.00 0.00 0.00 4.85
4031 4131 1.608055 CAATCACTCAACCACCTGCA 58.392 50.000 0.00 0.00 0.00 4.41
4032 4132 1.955778 CAATCACTCAACCACCTGCAA 59.044 47.619 0.00 0.00 0.00 4.08
4033 4133 1.609208 ATCACTCAACCACCTGCAAC 58.391 50.000 0.00 0.00 0.00 4.17
4034 4134 0.813610 TCACTCAACCACCTGCAACG 60.814 55.000 0.00 0.00 0.00 4.10
4035 4135 0.813610 CACTCAACCACCTGCAACGA 60.814 55.000 0.00 0.00 0.00 3.85
4036 4136 0.107410 ACTCAACCACCTGCAACGAA 60.107 50.000 0.00 0.00 0.00 3.85
4037 4137 0.588252 CTCAACCACCTGCAACGAAG 59.412 55.000 0.00 0.00 0.00 3.79
4038 4138 0.817634 TCAACCACCTGCAACGAAGG 60.818 55.000 0.00 0.00 40.93 3.46
4039 4139 1.528309 AACCACCTGCAACGAAGGG 60.528 57.895 0.00 0.00 39.30 3.95
4040 4140 2.113139 CCACCTGCAACGAAGGGT 59.887 61.111 0.00 0.00 39.30 4.34
4041 4141 1.373435 CCACCTGCAACGAAGGGTA 59.627 57.895 0.00 0.00 39.30 3.69
4042 4142 0.673644 CCACCTGCAACGAAGGGTAG 60.674 60.000 0.00 0.00 39.30 3.18
4043 4143 1.003718 ACCTGCAACGAAGGGTAGC 60.004 57.895 0.00 0.00 39.30 3.58
4044 4144 1.003839 CCTGCAACGAAGGGTAGCA 60.004 57.895 0.00 0.00 0.00 3.49
4045 4145 1.298859 CCTGCAACGAAGGGTAGCAC 61.299 60.000 0.00 0.00 0.00 4.40
4046 4146 0.602638 CTGCAACGAAGGGTAGCACA 60.603 55.000 0.00 0.00 0.00 4.57
4047 4147 0.179043 TGCAACGAAGGGTAGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
4048 4148 0.237498 GCAACGAAGGGTAGCACAAC 59.763 55.000 0.00 0.00 0.00 3.32
4049 4149 1.878953 CAACGAAGGGTAGCACAACT 58.121 50.000 0.00 0.00 0.00 3.16
4050 4150 1.798813 CAACGAAGGGTAGCACAACTC 59.201 52.381 0.00 0.00 0.00 3.01
4051 4151 1.339097 ACGAAGGGTAGCACAACTCT 58.661 50.000 0.00 0.00 0.00 3.24
4052 4152 1.000955 ACGAAGGGTAGCACAACTCTG 59.999 52.381 0.00 0.00 28.06 3.35
4053 4153 1.272490 CGAAGGGTAGCACAACTCTGA 59.728 52.381 0.00 0.00 28.06 3.27
4054 4154 2.093973 CGAAGGGTAGCACAACTCTGAT 60.094 50.000 0.00 0.00 28.06 2.90
4055 4155 3.617531 CGAAGGGTAGCACAACTCTGATT 60.618 47.826 0.00 0.00 28.06 2.57
4056 4156 4.327680 GAAGGGTAGCACAACTCTGATTT 58.672 43.478 0.00 0.00 28.06 2.17
4057 4157 4.373156 AGGGTAGCACAACTCTGATTTT 57.627 40.909 0.00 0.00 0.00 1.82
4058 4158 5.499004 AGGGTAGCACAACTCTGATTTTA 57.501 39.130 0.00 0.00 0.00 1.52
4059 4159 5.876357 AGGGTAGCACAACTCTGATTTTAA 58.124 37.500 0.00 0.00 0.00 1.52
4060 4160 6.303839 AGGGTAGCACAACTCTGATTTTAAA 58.696 36.000 0.00 0.00 0.00 1.52
4061 4161 6.431234 AGGGTAGCACAACTCTGATTTTAAAG 59.569 38.462 0.00 0.00 0.00 1.85
4062 4162 6.430000 GGGTAGCACAACTCTGATTTTAAAGA 59.570 38.462 0.00 0.00 0.00 2.52
4063 4163 7.361286 GGGTAGCACAACTCTGATTTTAAAGAG 60.361 40.741 1.15 1.15 44.57 2.85
4064 4164 7.387948 GGTAGCACAACTCTGATTTTAAAGAGA 59.612 37.037 8.56 2.25 42.15 3.10
4065 4165 7.432350 AGCACAACTCTGATTTTAAAGAGAG 57.568 36.000 14.72 14.72 42.15 3.20
4066 4166 6.072783 AGCACAACTCTGATTTTAAAGAGAGC 60.073 38.462 15.64 10.53 42.15 4.09
4067 4167 6.072783 GCACAACTCTGATTTTAAAGAGAGCT 60.073 38.462 15.64 0.00 42.15 4.09
4068 4168 7.296660 CACAACTCTGATTTTAAAGAGAGCTG 58.703 38.462 15.64 15.69 42.15 4.24
4069 4169 6.072783 ACAACTCTGATTTTAAAGAGAGCTGC 60.073 38.462 16.55 0.00 42.15 5.25
4070 4170 4.629200 ACTCTGATTTTAAAGAGAGCTGCG 59.371 41.667 15.64 0.00 42.15 5.18
4071 4171 4.820897 TCTGATTTTAAAGAGAGCTGCGA 58.179 39.130 0.00 0.00 0.00 5.10
4072 4172 5.237815 TCTGATTTTAAAGAGAGCTGCGAA 58.762 37.500 0.00 0.00 0.00 4.70
4073 4173 5.349817 TCTGATTTTAAAGAGAGCTGCGAAG 59.650 40.000 0.00 0.00 0.00 3.79
4074 4174 5.237815 TGATTTTAAAGAGAGCTGCGAAGA 58.762 37.500 0.00 0.00 0.00 2.87
4075 4175 5.700832 TGATTTTAAAGAGAGCTGCGAAGAA 59.299 36.000 0.00 0.00 0.00 2.52
4076 4176 5.597813 TTTTAAAGAGAGCTGCGAAGAAG 57.402 39.130 0.00 0.00 0.00 2.85
4077 4177 4.521130 TTAAAGAGAGCTGCGAAGAAGA 57.479 40.909 0.00 0.00 0.00 2.87
4078 4178 3.393089 AAAGAGAGCTGCGAAGAAGAA 57.607 42.857 0.00 0.00 0.00 2.52
4079 4179 2.362169 AGAGAGCTGCGAAGAAGAAC 57.638 50.000 0.00 0.00 0.00 3.01
4080 4180 1.892474 AGAGAGCTGCGAAGAAGAACT 59.108 47.619 0.00 0.00 0.00 3.01
4081 4181 3.085533 AGAGAGCTGCGAAGAAGAACTA 58.914 45.455 0.00 0.00 0.00 2.24
4082 4182 3.699038 AGAGAGCTGCGAAGAAGAACTAT 59.301 43.478 0.00 0.00 0.00 2.12
4083 4183 4.884744 AGAGAGCTGCGAAGAAGAACTATA 59.115 41.667 0.00 0.00 0.00 1.31
4084 4184 4.927422 AGAGCTGCGAAGAAGAACTATAC 58.073 43.478 0.00 0.00 0.00 1.47
4085 4185 4.399618 AGAGCTGCGAAGAAGAACTATACA 59.600 41.667 0.00 0.00 0.00 2.29
4086 4186 5.073311 AGCTGCGAAGAAGAACTATACAA 57.927 39.130 0.00 0.00 0.00 2.41
4087 4187 5.479306 AGCTGCGAAGAAGAACTATACAAA 58.521 37.500 0.00 0.00 0.00 2.83
4088 4188 5.578727 AGCTGCGAAGAAGAACTATACAAAG 59.421 40.000 0.00 0.00 0.00 2.77
4089 4189 5.725316 GCTGCGAAGAAGAACTATACAAAGC 60.725 44.000 0.00 0.00 0.00 3.51
4090 4190 5.479306 TGCGAAGAAGAACTATACAAAGCT 58.521 37.500 0.00 0.00 0.00 3.74
4091 4191 5.348724 TGCGAAGAAGAACTATACAAAGCTG 59.651 40.000 0.00 0.00 0.00 4.24
4092 4192 5.220491 GCGAAGAAGAACTATACAAAGCTGG 60.220 44.000 0.00 0.00 0.00 4.85
4093 4193 5.869888 CGAAGAAGAACTATACAAAGCTGGT 59.130 40.000 0.00 0.00 0.00 4.00
4094 4194 6.183360 CGAAGAAGAACTATACAAAGCTGGTG 60.183 42.308 1.72 0.00 0.00 4.17
4095 4195 4.938226 AGAAGAACTATACAAAGCTGGTGC 59.062 41.667 1.72 0.00 40.05 5.01
4096 4196 3.610911 AGAACTATACAAAGCTGGTGCC 58.389 45.455 1.72 0.00 40.80 5.01
4097 4197 2.024176 ACTATACAAAGCTGGTGCCG 57.976 50.000 1.72 0.00 40.80 5.69
4098 4198 1.278127 ACTATACAAAGCTGGTGCCGT 59.722 47.619 1.72 0.00 40.80 5.68
4099 4199 1.665679 CTATACAAAGCTGGTGCCGTG 59.334 52.381 1.72 0.00 40.80 4.94
4100 4200 0.960364 ATACAAAGCTGGTGCCGTGG 60.960 55.000 1.72 0.00 40.80 4.94
4101 4201 2.046009 TACAAAGCTGGTGCCGTGGA 62.046 55.000 1.72 0.00 40.80 4.02
4102 4202 1.973281 CAAAGCTGGTGCCGTGGAT 60.973 57.895 0.00 0.00 40.80 3.41
4103 4203 1.973281 AAAGCTGGTGCCGTGGATG 60.973 57.895 0.00 0.00 40.80 3.51
4104 4204 2.410322 AAAGCTGGTGCCGTGGATGA 62.410 55.000 0.00 0.00 40.80 2.92
4105 4205 2.124570 GCTGGTGCCGTGGATGAT 60.125 61.111 0.00 0.00 0.00 2.45
4106 4206 2.182842 GCTGGTGCCGTGGATGATC 61.183 63.158 0.00 0.00 0.00 2.92
4107 4207 1.221566 CTGGTGCCGTGGATGATCA 59.778 57.895 0.00 0.00 0.00 2.92
4108 4208 1.078497 TGGTGCCGTGGATGATCAC 60.078 57.895 0.00 0.00 0.00 3.06
4109 4209 1.819632 GGTGCCGTGGATGATCACC 60.820 63.158 0.00 2.22 40.13 4.02
4110 4210 1.221840 GTGCCGTGGATGATCACCT 59.778 57.895 0.00 0.00 34.36 4.00
4111 4211 0.464036 GTGCCGTGGATGATCACCTA 59.536 55.000 0.00 0.00 34.36 3.08
4112 4212 1.134521 GTGCCGTGGATGATCACCTAA 60.135 52.381 0.00 0.00 34.36 2.69
4113 4213 1.134521 TGCCGTGGATGATCACCTAAC 60.135 52.381 0.00 0.00 34.36 2.34
4114 4214 1.134521 GCCGTGGATGATCACCTAACA 60.135 52.381 0.00 0.00 34.36 2.41
4115 4215 2.826428 CCGTGGATGATCACCTAACAG 58.174 52.381 0.00 0.00 34.36 3.16
4116 4216 2.430694 CCGTGGATGATCACCTAACAGA 59.569 50.000 0.00 0.00 34.36 3.41
4117 4217 3.448686 CGTGGATGATCACCTAACAGAC 58.551 50.000 0.00 0.00 34.36 3.51
4118 4218 3.738281 CGTGGATGATCACCTAACAGACC 60.738 52.174 0.00 0.00 34.36 3.85
4119 4219 3.197766 GTGGATGATCACCTAACAGACCA 59.802 47.826 0.00 0.00 0.00 4.02
4120 4220 3.197766 TGGATGATCACCTAACAGACCAC 59.802 47.826 0.00 0.00 0.00 4.16
4121 4221 3.432326 GGATGATCACCTAACAGACCACC 60.432 52.174 0.00 0.00 0.00 4.61
4122 4222 2.902608 TGATCACCTAACAGACCACCT 58.097 47.619 0.00 0.00 0.00 4.00
4132 4232 4.736896 GACCACCTGTCGCCCGTC 62.737 72.222 0.00 0.00 33.49 4.79
4134 4234 4.082523 CCACCTGTCGCCCGTCAT 62.083 66.667 0.00 0.00 0.00 3.06
4135 4235 2.047274 CACCTGTCGCCCGTCATT 60.047 61.111 0.00 0.00 0.00 2.57
4136 4236 2.047274 ACCTGTCGCCCGTCATTG 60.047 61.111 0.00 0.00 0.00 2.82
4137 4237 2.047274 CCTGTCGCCCGTCATTGT 60.047 61.111 0.00 0.00 0.00 2.71
4138 4238 1.671054 CCTGTCGCCCGTCATTGTT 60.671 57.895 0.00 0.00 0.00 2.83
4139 4239 0.390603 CCTGTCGCCCGTCATTGTTA 60.391 55.000 0.00 0.00 0.00 2.41
4140 4240 0.719465 CTGTCGCCCGTCATTGTTAC 59.281 55.000 0.00 0.00 0.00 2.50
4141 4241 0.671163 TGTCGCCCGTCATTGTTACC 60.671 55.000 0.00 0.00 0.00 2.85
4142 4242 0.671163 GTCGCCCGTCATTGTTACCA 60.671 55.000 0.00 0.00 0.00 3.25
4143 4243 0.671163 TCGCCCGTCATTGTTACCAC 60.671 55.000 0.00 0.00 0.00 4.16
4144 4244 0.951525 CGCCCGTCATTGTTACCACA 60.952 55.000 0.00 0.00 0.00 4.17
4145 4245 1.459450 GCCCGTCATTGTTACCACAT 58.541 50.000 0.00 0.00 31.06 3.21
4146 4246 1.132262 GCCCGTCATTGTTACCACATG 59.868 52.381 0.00 0.00 31.06 3.21
4147 4247 1.742831 CCCGTCATTGTTACCACATGG 59.257 52.381 0.00 0.00 42.17 3.66
4148 4248 2.616765 CCCGTCATTGTTACCACATGGA 60.617 50.000 4.53 0.00 38.94 3.41
4149 4249 3.278574 CCGTCATTGTTACCACATGGAT 58.721 45.455 4.53 0.00 38.94 3.41
4150 4250 3.312421 CCGTCATTGTTACCACATGGATC 59.688 47.826 4.53 0.00 38.94 3.36
4151 4251 3.312421 CGTCATTGTTACCACATGGATCC 59.688 47.826 4.20 4.20 38.94 3.36
4152 4252 3.632145 GTCATTGTTACCACATGGATCCC 59.368 47.826 9.90 0.00 38.94 3.85
4153 4253 2.411628 TTGTTACCACATGGATCCCG 57.588 50.000 9.90 2.64 38.94 5.14
4154 4254 0.107410 TGTTACCACATGGATCCCGC 60.107 55.000 9.90 0.00 38.94 6.13
4155 4255 0.180406 GTTACCACATGGATCCCGCT 59.820 55.000 9.90 0.00 38.94 5.52
4156 4256 0.180171 TTACCACATGGATCCCGCTG 59.820 55.000 9.90 6.90 38.94 5.18
4157 4257 2.324014 TACCACATGGATCCCGCTGC 62.324 60.000 9.90 0.00 38.94 5.25
4158 4258 2.124612 CACATGGATCCCGCTGCA 60.125 61.111 9.90 0.00 0.00 4.41
4159 4259 2.184830 CACATGGATCCCGCTGCAG 61.185 63.158 10.11 10.11 0.00 4.41
4160 4260 2.191375 CATGGATCCCGCTGCAGT 59.809 61.111 16.64 0.00 0.00 4.40
4161 4261 1.337384 ACATGGATCCCGCTGCAGTA 61.337 55.000 16.64 0.00 0.00 2.74
4162 4262 0.179048 CATGGATCCCGCTGCAGTAA 60.179 55.000 16.64 0.00 0.00 2.24
4163 4263 0.179045 ATGGATCCCGCTGCAGTAAC 60.179 55.000 16.64 0.00 0.00 2.50
4164 4264 1.264749 TGGATCCCGCTGCAGTAACT 61.265 55.000 16.64 0.00 0.00 2.24
4165 4265 0.750850 GGATCCCGCTGCAGTAACTA 59.249 55.000 16.64 0.00 0.00 2.24
4166 4266 1.138266 GGATCCCGCTGCAGTAACTAA 59.862 52.381 16.64 0.00 0.00 2.24
4167 4267 2.202566 GATCCCGCTGCAGTAACTAAC 58.797 52.381 16.64 0.00 0.00 2.34
4168 4268 0.970640 TCCCGCTGCAGTAACTAACA 59.029 50.000 16.64 0.00 0.00 2.41
4169 4269 1.345089 TCCCGCTGCAGTAACTAACAA 59.655 47.619 16.64 0.00 0.00 2.83
4170 4270 2.147958 CCCGCTGCAGTAACTAACAAA 58.852 47.619 16.64 0.00 0.00 2.83
4171 4271 2.095919 CCCGCTGCAGTAACTAACAAAC 60.096 50.000 16.64 0.00 0.00 2.93
4172 4272 2.806244 CCGCTGCAGTAACTAACAAACT 59.194 45.455 16.64 0.00 0.00 2.66
4173 4273 3.363970 CCGCTGCAGTAACTAACAAACTG 60.364 47.826 16.64 0.00 42.80 3.16
4174 4274 3.493129 CGCTGCAGTAACTAACAAACTGA 59.507 43.478 16.64 0.00 42.59 3.41
4175 4275 4.025229 CGCTGCAGTAACTAACAAACTGAA 60.025 41.667 16.64 0.00 42.59 3.02
4176 4276 5.444122 GCTGCAGTAACTAACAAACTGAAG 58.556 41.667 16.64 5.69 45.90 3.02
4177 4277 5.560953 GCTGCAGTAACTAACAAACTGAAGG 60.561 44.000 16.64 0.22 44.11 3.46
4178 4278 5.676552 TGCAGTAACTAACAAACTGAAGGA 58.323 37.500 5.91 0.00 42.59 3.36
4179 4279 6.116806 TGCAGTAACTAACAAACTGAAGGAA 58.883 36.000 5.91 0.00 42.59 3.36
4180 4280 6.600032 TGCAGTAACTAACAAACTGAAGGAAA 59.400 34.615 5.91 0.00 42.59 3.13
4181 4281 7.284489 TGCAGTAACTAACAAACTGAAGGAAAT 59.716 33.333 5.91 0.00 42.59 2.17
4182 4282 8.780249 GCAGTAACTAACAAACTGAAGGAAATA 58.220 33.333 5.91 0.00 42.59 1.40
4185 4285 9.556030 GTAACTAACAAACTGAAGGAAATATGC 57.444 33.333 0.00 0.00 0.00 3.14
4186 4286 7.158099 ACTAACAAACTGAAGGAAATATGCC 57.842 36.000 0.00 0.00 0.00 4.40
4187 4287 5.405935 AACAAACTGAAGGAAATATGCCC 57.594 39.130 0.00 0.00 0.00 5.36
4188 4288 4.677182 ACAAACTGAAGGAAATATGCCCT 58.323 39.130 0.00 0.00 0.00 5.19
4189 4289 4.463891 ACAAACTGAAGGAAATATGCCCTG 59.536 41.667 0.00 0.00 32.12 4.45
4190 4290 3.303351 ACTGAAGGAAATATGCCCTGG 57.697 47.619 0.00 0.00 32.12 4.45
4191 4291 2.852449 ACTGAAGGAAATATGCCCTGGA 59.148 45.455 0.00 0.00 32.12 3.86
4192 4292 3.117738 ACTGAAGGAAATATGCCCTGGAG 60.118 47.826 0.00 0.70 32.12 3.86
4193 4293 2.175499 TGAAGGAAATATGCCCTGGAGG 59.825 50.000 0.00 0.00 39.47 4.30
4207 4307 5.520376 CCCTGGAGGCAATAATAAAGTTG 57.480 43.478 0.00 0.00 0.00 3.16
4208 4308 4.956075 CCCTGGAGGCAATAATAAAGTTGT 59.044 41.667 0.00 0.00 0.00 3.32
4209 4309 5.422012 CCCTGGAGGCAATAATAAAGTTGTT 59.578 40.000 0.00 0.00 0.00 2.83
4210 4310 6.605594 CCCTGGAGGCAATAATAAAGTTGTTA 59.394 38.462 0.00 0.00 0.00 2.41
4211 4311 7.287696 CCCTGGAGGCAATAATAAAGTTGTTAT 59.712 37.037 0.00 0.00 0.00 1.89
4212 4312 8.695456 CCTGGAGGCAATAATAAAGTTGTTATT 58.305 33.333 0.00 1.27 35.65 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.032071 GTCCAACCAGTGTCCCCG 59.968 66.667 0.00 0.00 0.00 5.73
1 2 2.032071 CGTCCAACCAGTGTCCCC 59.968 66.667 0.00 0.00 0.00 4.81
31 32 2.290287 TGTCCCTACCGCACAGCAT 61.290 57.895 0.00 0.00 0.00 3.79
45 46 0.966920 TCAAGAAGGAGTCGGTGTCC 59.033 55.000 0.00 0.00 0.00 4.02
101 103 1.266989 CTGTCGCACACTCTGTACAGA 59.733 52.381 23.80 23.80 37.83 3.41
103 105 0.313987 CCTGTCGCACACTCTGTACA 59.686 55.000 0.00 0.00 0.00 2.90
104 106 0.388649 CCCTGTCGCACACTCTGTAC 60.389 60.000 0.00 0.00 0.00 2.90
129 131 1.597461 GCCACGTTAAGGAGGAGCT 59.403 57.895 14.76 0.00 0.00 4.09
155 157 0.968901 ACTACGAGTCGGCATTCCCA 60.969 55.000 18.30 0.00 0.00 4.37
159 161 1.992170 GTCAACTACGAGTCGGCATT 58.008 50.000 18.30 4.56 0.00 3.56
200 202 4.529219 TGCGATTCGGCGGCATCT 62.529 61.111 10.53 0.00 35.06 2.90
206 208 1.059369 CTTTGACTGCGATTCGGCG 59.941 57.895 8.34 0.00 35.06 6.46
260 262 1.779569 CACGTGTGGACAAGGAGTAC 58.220 55.000 7.58 0.00 0.00 2.73
273 275 2.650116 CCTAGCTGAGGCCACGTGT 61.650 63.158 15.65 0.00 38.96 4.49
274 276 2.185350 CCTAGCTGAGGCCACGTG 59.815 66.667 9.08 9.08 38.96 4.49
275 277 2.037367 TCCTAGCTGAGGCCACGT 59.963 61.111 5.01 0.00 46.25 4.49
286 290 1.348036 ACAACAACACCTCCTCCTAGC 59.652 52.381 0.00 0.00 0.00 3.42
295 299 1.476488 GGAGCAACAACAACAACACCT 59.524 47.619 0.00 0.00 0.00 4.00
297 301 2.791158 CGAGGAGCAACAACAACAACAC 60.791 50.000 0.00 0.00 0.00 3.32
298 302 1.400142 CGAGGAGCAACAACAACAACA 59.600 47.619 0.00 0.00 0.00 3.33
299 303 2.105323 CGAGGAGCAACAACAACAAC 57.895 50.000 0.00 0.00 0.00 3.32
328 332 4.219288 GCTCAATGAGAAGGTGGTGATTTT 59.781 41.667 15.38 0.00 0.00 1.82
395 399 0.249996 GGTTTCCAAAGTCGTCCGGA 60.250 55.000 0.00 0.00 0.00 5.14
405 409 2.819477 CCAGCAGGTGGTTTCCAAA 58.181 52.632 10.82 0.00 42.17 3.28
406 410 4.597032 CCAGCAGGTGGTTTCCAA 57.403 55.556 10.82 0.00 42.17 3.53
421 426 1.770110 AGGGTGGTTCTCAGTGCCA 60.770 57.895 0.00 0.00 0.00 4.92
423 428 0.321122 CTCAGGGTGGTTCTCAGTGC 60.321 60.000 0.00 0.00 0.00 4.40
438 443 1.068055 GCAAATCCAGTTGTGGCTCAG 60.068 52.381 0.00 0.00 44.60 3.35
450 455 1.381599 GCAGGGATGGGCAAATCCA 60.382 57.895 17.31 0.71 46.94 3.41
477 482 0.840288 TGCCACCTTTGCCTCTCCTA 60.840 55.000 0.00 0.00 0.00 2.94
487 492 0.773644 ATCTCCACTGTGCCACCTTT 59.226 50.000 1.29 0.00 0.00 3.11
573 578 3.923864 TGACTGGTCACCGCGCTT 61.924 61.111 5.56 0.00 34.14 4.68
597 602 3.950397 ACTTGAATTCATGCCGGTTAGA 58.050 40.909 18.52 0.00 0.00 2.10
613 618 1.542915 GGCCGTACACTGACTACTTGA 59.457 52.381 0.00 0.00 0.00 3.02
621 626 1.663379 CCTCATCGGCCGTACACTGA 61.663 60.000 27.15 18.46 0.00 3.41
626 631 0.392060 AAAACCCTCATCGGCCGTAC 60.392 55.000 27.15 0.00 0.00 3.67
628 633 1.674322 CAAAACCCTCATCGGCCGT 60.674 57.895 27.15 10.00 0.00 5.68
629 634 2.406616 CCAAAACCCTCATCGGCCG 61.407 63.158 22.12 22.12 0.00 6.13
630 635 2.052104 CCCAAAACCCTCATCGGCC 61.052 63.158 0.00 0.00 0.00 6.13
633 638 1.904287 TTCACCCAAAACCCTCATCG 58.096 50.000 0.00 0.00 0.00 3.84
635 640 3.244526 GCAATTTCACCCAAAACCCTCAT 60.245 43.478 0.00 0.00 0.00 2.90
636 641 2.103941 GCAATTTCACCCAAAACCCTCA 59.896 45.455 0.00 0.00 0.00 3.86
654 672 1.974875 TAGACGCCCGACTGAGCAA 60.975 57.895 3.10 0.00 0.00 3.91
655 673 2.360726 TAGACGCCCGACTGAGCA 60.361 61.111 3.10 0.00 0.00 4.26
687 705 0.672401 TTGGAGGTTCGCGGATGTTC 60.672 55.000 6.13 0.00 0.00 3.18
688 706 0.953960 GTTGGAGGTTCGCGGATGTT 60.954 55.000 6.13 0.00 0.00 2.71
689 707 1.375523 GTTGGAGGTTCGCGGATGT 60.376 57.895 6.13 0.00 0.00 3.06
690 708 2.106683 GGTTGGAGGTTCGCGGATG 61.107 63.158 6.13 0.00 0.00 3.51
691 709 2.267961 GGTTGGAGGTTCGCGGAT 59.732 61.111 6.13 0.00 0.00 4.18
692 710 4.367023 CGGTTGGAGGTTCGCGGA 62.367 66.667 6.13 0.00 0.00 5.54
744 762 5.885352 TGTATCAAATGTCCGTGGATTGATT 59.115 36.000 17.02 4.06 40.26 2.57
778 796 7.197486 CGTAACAAACGTTAGATAGGTGTAC 57.803 40.000 0.00 0.01 46.72 2.90
814 832 2.099098 GTGAAACCGCCAAATAGGATGG 59.901 50.000 0.00 0.00 41.22 3.51
828 846 5.807011 GCCAACTATTGATCAATGTGAAACC 59.193 40.000 27.59 9.34 34.36 3.27
835 853 2.358582 TGCCGCCAACTATTGATCAATG 59.641 45.455 27.59 19.53 32.50 2.82
926 950 8.839310 AATGCTACACCTACATTATGATTCTC 57.161 34.615 0.00 0.00 32.42 2.87
976 1000 1.338674 CCTAAATGTCTCCACCGTGCA 60.339 52.381 0.00 0.00 0.00 4.57
1000 1024 1.597797 CCAACGCCCTGCATCAACAT 61.598 55.000 0.00 0.00 0.00 2.71
1002 1026 1.926511 CTCCAACGCCCTGCATCAAC 61.927 60.000 0.00 0.00 0.00 3.18
1043 1067 2.372172 ACCATTTGAAAGGGTCTCGTCT 59.628 45.455 8.65 0.00 0.00 4.18
1044 1068 2.484264 CACCATTTGAAAGGGTCTCGTC 59.516 50.000 11.78 0.00 31.03 4.20
1045 1069 2.504367 CACCATTTGAAAGGGTCTCGT 58.496 47.619 11.78 0.00 31.03 4.18
1046 1070 1.812571 CCACCATTTGAAAGGGTCTCG 59.187 52.381 11.78 0.92 31.03 4.04
1047 1071 3.084786 CTCCACCATTTGAAAGGGTCTC 58.915 50.000 11.78 0.00 31.03 3.36
1209 1233 2.732619 GGGGAAAGAGCCGGATCGT 61.733 63.158 15.18 8.54 0.00 3.73
1214 1238 2.044946 CTTGGGGGAAAGAGCCGG 60.045 66.667 0.00 0.00 0.00 6.13
1547 1574 3.982372 TTCTCCGTGTGCGCGATCC 62.982 63.158 12.10 0.00 36.67 3.36
1762 1789 1.251527 ATCGACTTGCAGGTCTCCGT 61.252 55.000 24.46 6.87 34.38 4.69
1767 1794 2.186076 CGTCTTATCGACTTGCAGGTC 58.814 52.381 18.45 18.45 40.59 3.85
1778 1805 1.949631 GAAGGCGGCCGTCTTATCG 60.950 63.158 42.33 7.78 40.49 2.92
2127 2154 2.179517 CAGAGGTCGTGCTCCGTC 59.820 66.667 0.00 0.00 37.94 4.79
2731 2779 0.035036 TACCGCCCGTTGTTCATCAA 59.965 50.000 0.00 0.00 0.00 2.57
3395 3487 9.595823 GCAGTAAGTAAATACATCACCTCTTAA 57.404 33.333 0.00 0.00 0.00 1.85
3396 3488 7.919091 CGCAGTAAGTAAATACATCACCTCTTA 59.081 37.037 0.00 0.00 0.00 2.10
3506 3600 8.239314 CAGGGGATGAAAAATACATATGATTCG 58.761 37.037 10.38 0.00 0.00 3.34
3528 3622 3.950397 TGTATTACTCCAGCAAACAGGG 58.050 45.455 0.00 0.00 0.00 4.45
3565 3659 2.384382 GGAAACAATGCGATAATGCCG 58.616 47.619 0.00 0.00 0.00 5.69
3574 3668 2.749076 TCTCATCTTGGGAAACAATGCG 59.251 45.455 0.00 0.00 38.65 4.73
3587 3681 6.185511 TCTTGGCATGAATTTCTCTCATCTT 58.814 36.000 0.00 0.00 30.99 2.40
3605 3699 2.531522 AAAACCTGCATGTTCTTGGC 57.468 45.000 7.87 0.00 0.00 4.52
3610 3704 6.470235 CGATGAATTCTAAAACCTGCATGTTC 59.530 38.462 7.87 0.00 0.00 3.18
3614 3708 5.647658 TGTCGATGAATTCTAAAACCTGCAT 59.352 36.000 7.05 0.00 0.00 3.96
3642 3736 9.694137 TTTCTTTTTCTAAAACGGAGACAAAAA 57.306 25.926 0.00 0.00 0.00 1.94
3666 3760 6.146021 GCCGTCAATGAAAATTGTCAGATTTT 59.854 34.615 4.31 5.80 40.80 1.82
3667 3761 5.634859 GCCGTCAATGAAAATTGTCAGATTT 59.365 36.000 4.31 0.00 33.49 2.17
3668 3762 5.163513 GCCGTCAATGAAAATTGTCAGATT 58.836 37.500 4.31 0.00 33.49 2.40
3669 3763 4.672542 CGCCGTCAATGAAAATTGTCAGAT 60.673 41.667 4.31 0.00 33.49 2.90
3670 3764 3.364864 CGCCGTCAATGAAAATTGTCAGA 60.365 43.478 4.31 0.00 33.49 3.27
3671 3765 2.910482 CGCCGTCAATGAAAATTGTCAG 59.090 45.455 4.31 0.00 33.49 3.51
3672 3766 2.292016 ACGCCGTCAATGAAAATTGTCA 59.708 40.909 0.00 0.00 33.49 3.58
3673 3767 2.908626 GACGCCGTCAATGAAAATTGTC 59.091 45.455 13.23 0.00 33.49 3.18
3674 3768 2.664424 CGACGCCGTCAATGAAAATTGT 60.664 45.455 18.40 0.00 33.49 2.71
3675 3769 1.904412 CGACGCCGTCAATGAAAATTG 59.096 47.619 18.40 0.00 32.09 2.32
3676 3770 1.801771 TCGACGCCGTCAATGAAAATT 59.198 42.857 18.40 0.00 37.05 1.82
3677 3771 1.434555 TCGACGCCGTCAATGAAAAT 58.565 45.000 18.40 0.00 37.05 1.82
3678 3772 1.193650 CTTCGACGCCGTCAATGAAAA 59.806 47.619 18.40 0.70 37.05 2.29
3679 3773 0.787787 CTTCGACGCCGTCAATGAAA 59.212 50.000 18.40 2.39 37.05 2.69
3680 3774 0.319211 ACTTCGACGCCGTCAATGAA 60.319 50.000 18.40 11.42 37.05 2.57
3681 3775 0.319211 AACTTCGACGCCGTCAATGA 60.319 50.000 18.40 3.52 37.05 2.57
3682 3776 0.511221 AAACTTCGACGCCGTCAATG 59.489 50.000 18.40 3.61 37.05 2.82
3683 3777 0.511221 CAAACTTCGACGCCGTCAAT 59.489 50.000 18.40 0.00 37.05 2.57
3684 3778 1.928653 CAAACTTCGACGCCGTCAA 59.071 52.632 18.40 9.62 37.05 3.18
3715 3809 8.146479 TGATGACGATGGATTTATTTTCTCAG 57.854 34.615 0.00 0.00 0.00 3.35
3717 3811 9.604626 GAATGATGACGATGGATTTATTTTCTC 57.395 33.333 0.00 0.00 0.00 2.87
3718 3812 9.347240 AGAATGATGACGATGGATTTATTTTCT 57.653 29.630 0.00 0.00 0.00 2.52
3719 3813 9.604626 GAGAATGATGACGATGGATTTATTTTC 57.395 33.333 0.00 0.00 0.00 2.29
3720 3814 8.571336 GGAGAATGATGACGATGGATTTATTTT 58.429 33.333 0.00 0.00 0.00 1.82
3721 3815 7.175641 GGGAGAATGATGACGATGGATTTATTT 59.824 37.037 0.00 0.00 0.00 1.40
3723 3817 6.013032 AGGGAGAATGATGACGATGGATTTAT 60.013 38.462 0.00 0.00 0.00 1.40
3724 3818 5.307976 AGGGAGAATGATGACGATGGATTTA 59.692 40.000 0.00 0.00 0.00 1.40
3729 3829 2.366590 TCAGGGAGAATGATGACGATGG 59.633 50.000 0.00 0.00 0.00 3.51
3991 4091 2.943033 GGCGTAGATATTGTTGTGGCTT 59.057 45.455 0.00 0.00 0.00 4.35
3992 4092 2.093181 TGGCGTAGATATTGTTGTGGCT 60.093 45.455 0.00 0.00 0.00 4.75
3993 4093 2.285083 TGGCGTAGATATTGTTGTGGC 58.715 47.619 0.00 0.00 0.00 5.01
3994 4094 4.574421 TGATTGGCGTAGATATTGTTGTGG 59.426 41.667 0.00 0.00 0.00 4.17
3995 4095 5.294306 AGTGATTGGCGTAGATATTGTTGTG 59.706 40.000 0.00 0.00 0.00 3.33
3996 4096 5.428253 AGTGATTGGCGTAGATATTGTTGT 58.572 37.500 0.00 0.00 0.00 3.32
3997 4097 5.523552 TGAGTGATTGGCGTAGATATTGTTG 59.476 40.000 0.00 0.00 0.00 3.33
3998 4098 5.670485 TGAGTGATTGGCGTAGATATTGTT 58.330 37.500 0.00 0.00 0.00 2.83
3999 4099 5.276461 TGAGTGATTGGCGTAGATATTGT 57.724 39.130 0.00 0.00 0.00 2.71
4000 4100 5.050091 GGTTGAGTGATTGGCGTAGATATTG 60.050 44.000 0.00 0.00 0.00 1.90
4001 4101 5.057149 GGTTGAGTGATTGGCGTAGATATT 58.943 41.667 0.00 0.00 0.00 1.28
4002 4102 4.100963 TGGTTGAGTGATTGGCGTAGATAT 59.899 41.667 0.00 0.00 0.00 1.63
4003 4103 3.449377 TGGTTGAGTGATTGGCGTAGATA 59.551 43.478 0.00 0.00 0.00 1.98
4004 4104 2.236146 TGGTTGAGTGATTGGCGTAGAT 59.764 45.455 0.00 0.00 0.00 1.98
4005 4105 1.621317 TGGTTGAGTGATTGGCGTAGA 59.379 47.619 0.00 0.00 0.00 2.59
4006 4106 1.732259 GTGGTTGAGTGATTGGCGTAG 59.268 52.381 0.00 0.00 0.00 3.51
4007 4107 1.609580 GGTGGTTGAGTGATTGGCGTA 60.610 52.381 0.00 0.00 0.00 4.42
4008 4108 0.889186 GGTGGTTGAGTGATTGGCGT 60.889 55.000 0.00 0.00 0.00 5.68
4009 4109 0.606401 AGGTGGTTGAGTGATTGGCG 60.606 55.000 0.00 0.00 0.00 5.69
4010 4110 0.883833 CAGGTGGTTGAGTGATTGGC 59.116 55.000 0.00 0.00 0.00 4.52
4011 4111 0.883833 GCAGGTGGTTGAGTGATTGG 59.116 55.000 0.00 0.00 0.00 3.16
4012 4112 1.608055 TGCAGGTGGTTGAGTGATTG 58.392 50.000 0.00 0.00 0.00 2.67
4013 4113 1.956477 GTTGCAGGTGGTTGAGTGATT 59.044 47.619 0.00 0.00 0.00 2.57
4014 4114 1.609208 GTTGCAGGTGGTTGAGTGAT 58.391 50.000 0.00 0.00 0.00 3.06
4015 4115 0.813610 CGTTGCAGGTGGTTGAGTGA 60.814 55.000 0.00 0.00 0.00 3.41
4016 4116 0.813610 TCGTTGCAGGTGGTTGAGTG 60.814 55.000 0.00 0.00 0.00 3.51
4017 4117 0.107410 TTCGTTGCAGGTGGTTGAGT 60.107 50.000 0.00 0.00 0.00 3.41
4018 4118 0.588252 CTTCGTTGCAGGTGGTTGAG 59.412 55.000 0.00 0.00 0.00 3.02
4019 4119 0.817634 CCTTCGTTGCAGGTGGTTGA 60.818 55.000 0.00 0.00 0.00 3.18
4020 4120 1.654220 CCTTCGTTGCAGGTGGTTG 59.346 57.895 0.00 0.00 0.00 3.77
4021 4121 1.528309 CCCTTCGTTGCAGGTGGTT 60.528 57.895 0.00 0.00 0.00 3.67
4022 4122 1.412453 TACCCTTCGTTGCAGGTGGT 61.412 55.000 3.43 1.29 33.70 4.16
4023 4123 0.673644 CTACCCTTCGTTGCAGGTGG 60.674 60.000 3.43 0.00 33.70 4.61
4024 4124 1.298859 GCTACCCTTCGTTGCAGGTG 61.299 60.000 3.43 0.00 42.09 4.00
4025 4125 1.003718 GCTACCCTTCGTTGCAGGT 60.004 57.895 0.00 0.00 42.09 4.00
4026 4126 1.003839 TGCTACCCTTCGTTGCAGG 60.004 57.895 0.00 0.00 46.27 4.85
4027 4127 4.693532 TGCTACCCTTCGTTGCAG 57.306 55.556 0.00 0.00 46.27 4.41
4029 4129 0.237498 GTTGTGCTACCCTTCGTTGC 59.763 55.000 0.00 0.00 42.73 4.17
4030 4130 1.798813 GAGTTGTGCTACCCTTCGTTG 59.201 52.381 0.00 0.00 0.00 4.10
4031 4131 1.692519 AGAGTTGTGCTACCCTTCGTT 59.307 47.619 0.00 0.00 0.00 3.85
4032 4132 1.000955 CAGAGTTGTGCTACCCTTCGT 59.999 52.381 0.00 0.00 0.00 3.85
4033 4133 1.272490 TCAGAGTTGTGCTACCCTTCG 59.728 52.381 0.00 0.00 0.00 3.79
4034 4134 3.618690 ATCAGAGTTGTGCTACCCTTC 57.381 47.619 0.00 0.00 0.00 3.46
4035 4135 4.373156 AAATCAGAGTTGTGCTACCCTT 57.627 40.909 0.00 0.00 0.00 3.95
4036 4136 4.373156 AAAATCAGAGTTGTGCTACCCT 57.627 40.909 0.00 0.00 0.00 4.34
4037 4137 6.430000 TCTTTAAAATCAGAGTTGTGCTACCC 59.570 38.462 0.00 0.00 0.00 3.69
4038 4138 7.387948 TCTCTTTAAAATCAGAGTTGTGCTACC 59.612 37.037 2.61 0.00 38.20 3.18
4039 4139 8.311650 TCTCTTTAAAATCAGAGTTGTGCTAC 57.688 34.615 2.61 0.00 38.20 3.58
4040 4140 7.118390 GCTCTCTTTAAAATCAGAGTTGTGCTA 59.882 37.037 15.13 0.00 38.20 3.49
4041 4141 6.072783 GCTCTCTTTAAAATCAGAGTTGTGCT 60.073 38.462 15.13 0.00 38.20 4.40
4042 4142 6.072783 AGCTCTCTTTAAAATCAGAGTTGTGC 60.073 38.462 15.13 9.86 38.20 4.57
4043 4143 7.296660 CAGCTCTCTTTAAAATCAGAGTTGTG 58.703 38.462 18.06 11.32 38.64 3.33
4044 4144 6.072783 GCAGCTCTCTTTAAAATCAGAGTTGT 60.073 38.462 22.59 8.97 42.86 3.32
4045 4145 6.313252 GCAGCTCTCTTTAAAATCAGAGTTG 58.687 40.000 20.12 20.12 43.42 3.16
4046 4146 5.121454 CGCAGCTCTCTTTAAAATCAGAGTT 59.879 40.000 15.13 9.62 38.20 3.01
4047 4147 4.629200 CGCAGCTCTCTTTAAAATCAGAGT 59.371 41.667 15.13 5.03 38.20 3.24
4048 4148 4.867047 TCGCAGCTCTCTTTAAAATCAGAG 59.133 41.667 11.61 11.61 38.35 3.35
4049 4149 4.820897 TCGCAGCTCTCTTTAAAATCAGA 58.179 39.130 0.00 0.00 0.00 3.27
4050 4150 5.349817 TCTTCGCAGCTCTCTTTAAAATCAG 59.650 40.000 0.00 0.00 0.00 2.90
4051 4151 5.237815 TCTTCGCAGCTCTCTTTAAAATCA 58.762 37.500 0.00 0.00 0.00 2.57
4052 4152 5.786401 TCTTCGCAGCTCTCTTTAAAATC 57.214 39.130 0.00 0.00 0.00 2.17
4053 4153 5.934625 TCTTCTTCGCAGCTCTCTTTAAAAT 59.065 36.000 0.00 0.00 0.00 1.82
4054 4154 5.297547 TCTTCTTCGCAGCTCTCTTTAAAA 58.702 37.500 0.00 0.00 0.00 1.52
4055 4155 4.883083 TCTTCTTCGCAGCTCTCTTTAAA 58.117 39.130 0.00 0.00 0.00 1.52
4056 4156 4.521130 TCTTCTTCGCAGCTCTCTTTAA 57.479 40.909 0.00 0.00 0.00 1.52
4057 4157 4.021894 AGTTCTTCTTCGCAGCTCTCTTTA 60.022 41.667 0.00 0.00 0.00 1.85
4058 4158 3.063485 GTTCTTCTTCGCAGCTCTCTTT 58.937 45.455 0.00 0.00 0.00 2.52
4059 4159 2.298729 AGTTCTTCTTCGCAGCTCTCTT 59.701 45.455 0.00 0.00 0.00 2.85
4060 4160 1.892474 AGTTCTTCTTCGCAGCTCTCT 59.108 47.619 0.00 0.00 0.00 3.10
4061 4161 2.362169 AGTTCTTCTTCGCAGCTCTC 57.638 50.000 0.00 0.00 0.00 3.20
4062 4162 4.399618 TGTATAGTTCTTCTTCGCAGCTCT 59.600 41.667 0.00 0.00 0.00 4.09
4063 4163 4.673441 TGTATAGTTCTTCTTCGCAGCTC 58.327 43.478 0.00 0.00 0.00 4.09
4064 4164 4.720649 TGTATAGTTCTTCTTCGCAGCT 57.279 40.909 0.00 0.00 0.00 4.24
4065 4165 5.725316 GCTTTGTATAGTTCTTCTTCGCAGC 60.725 44.000 0.00 0.00 0.00 5.25
4066 4166 5.578727 AGCTTTGTATAGTTCTTCTTCGCAG 59.421 40.000 0.00 0.00 0.00 5.18
4067 4167 5.348724 CAGCTTTGTATAGTTCTTCTTCGCA 59.651 40.000 0.00 0.00 0.00 5.10
4068 4168 5.220491 CCAGCTTTGTATAGTTCTTCTTCGC 60.220 44.000 0.00 0.00 0.00 4.70
4069 4169 5.869888 ACCAGCTTTGTATAGTTCTTCTTCG 59.130 40.000 0.00 0.00 0.00 3.79
4070 4170 6.402658 GCACCAGCTTTGTATAGTTCTTCTTC 60.403 42.308 0.00 0.00 37.91 2.87
4071 4171 5.412904 GCACCAGCTTTGTATAGTTCTTCTT 59.587 40.000 0.00 0.00 37.91 2.52
4072 4172 4.938226 GCACCAGCTTTGTATAGTTCTTCT 59.062 41.667 0.00 0.00 37.91 2.85
4073 4173 4.095036 GGCACCAGCTTTGTATAGTTCTTC 59.905 45.833 0.00 0.00 41.70 2.87
4074 4174 4.010349 GGCACCAGCTTTGTATAGTTCTT 58.990 43.478 0.00 0.00 41.70 2.52
4075 4175 3.610911 GGCACCAGCTTTGTATAGTTCT 58.389 45.455 0.00 0.00 41.70 3.01
4076 4176 2.351726 CGGCACCAGCTTTGTATAGTTC 59.648 50.000 0.00 0.00 41.70 3.01
4077 4177 2.290071 ACGGCACCAGCTTTGTATAGTT 60.290 45.455 0.00 0.00 41.70 2.24
4078 4178 1.278127 ACGGCACCAGCTTTGTATAGT 59.722 47.619 0.00 0.00 41.70 2.12
4079 4179 1.665679 CACGGCACCAGCTTTGTATAG 59.334 52.381 0.00 0.00 41.70 1.31
4080 4180 1.677518 CCACGGCACCAGCTTTGTATA 60.678 52.381 0.00 0.00 41.70 1.47
4081 4181 0.960364 CCACGGCACCAGCTTTGTAT 60.960 55.000 0.00 0.00 41.70 2.29
4082 4182 1.599518 CCACGGCACCAGCTTTGTA 60.600 57.895 0.00 0.00 41.70 2.41
4083 4183 2.697147 ATCCACGGCACCAGCTTTGT 62.697 55.000 0.00 0.00 41.70 2.83
4084 4184 1.973281 ATCCACGGCACCAGCTTTG 60.973 57.895 0.00 0.00 41.70 2.77
4085 4185 1.973281 CATCCACGGCACCAGCTTT 60.973 57.895 0.00 0.00 41.70 3.51
4086 4186 2.202236 ATCATCCACGGCACCAGCTT 62.202 55.000 0.00 0.00 41.70 3.74
4087 4187 2.599645 GATCATCCACGGCACCAGCT 62.600 60.000 0.00 0.00 41.70 4.24
4088 4188 2.124570 ATCATCCACGGCACCAGC 60.125 61.111 0.00 0.00 41.10 4.85
4089 4189 1.091771 GTGATCATCCACGGCACCAG 61.092 60.000 0.00 0.00 0.00 4.00
4090 4190 1.078497 GTGATCATCCACGGCACCA 60.078 57.895 0.00 0.00 0.00 4.17
4091 4191 1.819632 GGTGATCATCCACGGCACC 60.820 63.158 0.00 0.00 41.77 5.01
4092 4192 0.464036 TAGGTGATCATCCACGGCAC 59.536 55.000 1.24 0.00 37.91 5.01
4093 4193 1.134521 GTTAGGTGATCATCCACGGCA 60.135 52.381 1.24 0.00 37.91 5.69
4094 4194 1.134521 TGTTAGGTGATCATCCACGGC 60.135 52.381 1.24 0.00 37.91 5.68
4095 4195 2.430694 TCTGTTAGGTGATCATCCACGG 59.569 50.000 1.24 5.41 37.91 4.94
4096 4196 3.448686 GTCTGTTAGGTGATCATCCACG 58.551 50.000 1.24 0.00 37.91 4.94
4097 4197 3.197766 TGGTCTGTTAGGTGATCATCCAC 59.802 47.826 1.24 0.39 36.37 4.02
4098 4198 3.197766 GTGGTCTGTTAGGTGATCATCCA 59.802 47.826 1.24 0.00 0.00 3.41
4099 4199 3.432326 GGTGGTCTGTTAGGTGATCATCC 60.432 52.174 1.24 4.30 0.00 3.51
4100 4200 3.452627 AGGTGGTCTGTTAGGTGATCATC 59.547 47.826 0.00 0.00 0.00 2.92
4101 4201 3.198635 CAGGTGGTCTGTTAGGTGATCAT 59.801 47.826 0.00 0.00 38.64 2.45
4102 4202 2.567169 CAGGTGGTCTGTTAGGTGATCA 59.433 50.000 0.00 0.00 38.64 2.92
4103 4203 3.252974 CAGGTGGTCTGTTAGGTGATC 57.747 52.381 0.00 0.00 38.64 2.92
4115 4215 4.736896 GACGGGCGACAGGTGGTC 62.737 72.222 0.00 0.00 43.36 4.02
4117 4217 3.605749 AATGACGGGCGACAGGTGG 62.606 63.158 0.00 0.00 0.00 4.61
4118 4218 2.047274 AATGACGGGCGACAGGTG 60.047 61.111 0.00 0.00 0.00 4.00
4119 4219 2.047274 CAATGACGGGCGACAGGT 60.047 61.111 0.00 0.00 0.00 4.00
4120 4220 0.390603 TAACAATGACGGGCGACAGG 60.391 55.000 0.00 0.00 0.00 4.00
4121 4221 0.719465 GTAACAATGACGGGCGACAG 59.281 55.000 0.00 0.00 0.00 3.51
4122 4222 0.671163 GGTAACAATGACGGGCGACA 60.671 55.000 0.00 0.00 0.00 4.35
4123 4223 2.084013 GGTAACAATGACGGGCGAC 58.916 57.895 0.00 0.00 0.00 5.19
4124 4224 4.602159 GGTAACAATGACGGGCGA 57.398 55.556 0.00 0.00 0.00 5.54
4136 4236 0.180406 AGCGGGATCCATGTGGTAAC 59.820 55.000 15.23 0.00 36.34 2.50
4137 4237 0.180171 CAGCGGGATCCATGTGGTAA 59.820 55.000 15.23 0.00 36.34 2.85
4138 4238 1.829456 CAGCGGGATCCATGTGGTA 59.171 57.895 15.23 0.00 36.34 3.25
4139 4239 2.591753 CAGCGGGATCCATGTGGT 59.408 61.111 15.23 2.67 36.34 4.16
4140 4240 2.903855 GCAGCGGGATCCATGTGG 60.904 66.667 15.23 3.32 0.00 4.17
4141 4241 2.124612 TGCAGCGGGATCCATGTG 60.125 61.111 15.23 8.06 0.00 3.21
4142 4242 1.337384 TACTGCAGCGGGATCCATGT 61.337 55.000 15.27 3.70 0.00 3.21
4143 4243 0.179048 TTACTGCAGCGGGATCCATG 60.179 55.000 15.27 10.16 0.00 3.66
4144 4244 0.179045 GTTACTGCAGCGGGATCCAT 60.179 55.000 15.27 0.00 0.00 3.41
4145 4245 1.220749 GTTACTGCAGCGGGATCCA 59.779 57.895 15.27 0.00 0.00 3.41
4146 4246 0.750850 TAGTTACTGCAGCGGGATCC 59.249 55.000 15.27 1.92 0.00 3.36
4147 4247 2.202566 GTTAGTTACTGCAGCGGGATC 58.797 52.381 15.27 0.00 0.00 3.36
4148 4248 1.553248 TGTTAGTTACTGCAGCGGGAT 59.447 47.619 15.27 0.00 0.00 3.85
4149 4249 0.970640 TGTTAGTTACTGCAGCGGGA 59.029 50.000 15.27 0.00 0.00 5.14
4150 4250 1.803334 TTGTTAGTTACTGCAGCGGG 58.197 50.000 15.27 0.00 0.00 6.13
4151 4251 2.806244 AGTTTGTTAGTTACTGCAGCGG 59.194 45.455 15.27 0.00 0.00 5.52
4152 4252 3.493129 TCAGTTTGTTAGTTACTGCAGCG 59.507 43.478 15.27 0.00 39.24 5.18
4153 4253 5.418310 TTCAGTTTGTTAGTTACTGCAGC 57.582 39.130 15.27 0.00 39.24 5.25
4154 4254 5.758296 TCCTTCAGTTTGTTAGTTACTGCAG 59.242 40.000 13.48 13.48 39.24 4.41
4155 4255 5.676552 TCCTTCAGTTTGTTAGTTACTGCA 58.323 37.500 0.00 0.00 39.24 4.41
4156 4256 6.613755 TTCCTTCAGTTTGTTAGTTACTGC 57.386 37.500 0.00 0.00 39.24 4.40
4159 4259 9.556030 GCATATTTCCTTCAGTTTGTTAGTTAC 57.444 33.333 0.00 0.00 0.00 2.50
4160 4260 8.736244 GGCATATTTCCTTCAGTTTGTTAGTTA 58.264 33.333 0.00 0.00 0.00 2.24
4161 4261 7.309805 GGGCATATTTCCTTCAGTTTGTTAGTT 60.310 37.037 0.00 0.00 0.00 2.24
4162 4262 6.152831 GGGCATATTTCCTTCAGTTTGTTAGT 59.847 38.462 0.00 0.00 0.00 2.24
4163 4263 6.378280 AGGGCATATTTCCTTCAGTTTGTTAG 59.622 38.462 0.00 0.00 0.00 2.34
4164 4264 6.152661 CAGGGCATATTTCCTTCAGTTTGTTA 59.847 38.462 0.00 0.00 0.00 2.41
4165 4265 5.047092 CAGGGCATATTTCCTTCAGTTTGTT 60.047 40.000 0.00 0.00 0.00 2.83
4166 4266 4.463891 CAGGGCATATTTCCTTCAGTTTGT 59.536 41.667 0.00 0.00 0.00 2.83
4167 4267 4.142093 CCAGGGCATATTTCCTTCAGTTTG 60.142 45.833 0.00 0.00 0.00 2.93
4168 4268 4.026052 CCAGGGCATATTTCCTTCAGTTT 58.974 43.478 0.00 0.00 0.00 2.66
4169 4269 3.269381 TCCAGGGCATATTTCCTTCAGTT 59.731 43.478 0.00 0.00 0.00 3.16
4170 4270 2.852449 TCCAGGGCATATTTCCTTCAGT 59.148 45.455 0.00 0.00 0.00 3.41
4171 4271 3.484407 CTCCAGGGCATATTTCCTTCAG 58.516 50.000 0.00 0.00 0.00 3.02
4172 4272 2.175499 CCTCCAGGGCATATTTCCTTCA 59.825 50.000 0.00 0.00 0.00 3.02
4173 4273 2.868899 CCTCCAGGGCATATTTCCTTC 58.131 52.381 0.00 0.00 0.00 3.46
4185 4285 4.956075 ACAACTTTATTATTGCCTCCAGGG 59.044 41.667 0.00 0.00 35.18 4.45
4186 4286 6.530019 AACAACTTTATTATTGCCTCCAGG 57.470 37.500 0.00 0.00 38.53 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.