Multiple sequence alignment - TraesCS5A01G121800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G121800 chr5A 100.000 3260 0 0 1 3260 264420168 264423427 0.000000e+00 6021.0
1 TraesCS5A01G121800 chr5D 93.899 2688 82 25 509 3146 205994940 205997595 0.000000e+00 3980.0
2 TraesCS5A01G121800 chr5D 88.421 95 7 4 3132 3223 205997752 205997845 9.560000e-21 111.0
3 TraesCS5A01G121800 chr5B 92.627 2292 78 31 692 2938 206103069 206100824 0.000000e+00 3212.0
4 TraesCS5A01G121800 chr5B 93.855 179 9 2 516 693 206107844 206107667 5.360000e-68 268.0
5 TraesCS5A01G121800 chr7A 98.214 448 8 0 1 448 26995105 26995552 0.000000e+00 784.0
6 TraesCS5A01G121800 chr4A 97.391 460 10 2 1 458 140358647 140358188 0.000000e+00 782.0
7 TraesCS5A01G121800 chr4A 93.304 448 14 2 1 448 729740154 729740585 0.000000e+00 647.0
8 TraesCS5A01G121800 chr4A 91.509 212 18 0 1311 1522 530122135 530122346 3.180000e-75 292.0
9 TraesCS5A01G121800 chr4A 86.275 51 4 3 3134 3182 47711984 47712033 6.000000e-03 52.8
10 TraesCS5A01G121800 chr4A 100.000 28 0 0 1814 1841 530122677 530122704 6.000000e-03 52.8
11 TraesCS5A01G121800 chr1A 96.896 451 12 2 1 451 134279533 134279085 0.000000e+00 754.0
12 TraesCS5A01G121800 chr1A 96.009 451 16 2 1 451 134300020 134299572 0.000000e+00 732.0
13 TraesCS5A01G121800 chr1A 95.787 451 17 2 1 451 134289778 134289330 0.000000e+00 726.0
14 TraesCS5A01G121800 chr1A 97.865 281 6 0 1 281 134309945 134309665 1.360000e-133 486.0
15 TraesCS5A01G121800 chr1A 92.778 180 12 1 269 448 540454773 540454951 3.230000e-65 259.0
16 TraesCS5A01G121800 chr1A 80.769 78 13 2 3083 3158 19062079 19062156 3.510000e-05 60.2
17 TraesCS5A01G121800 chr4D 96.998 433 10 2 18 450 96578037 96577608 0.000000e+00 725.0
18 TraesCS5A01G121800 chr4D 91.284 218 19 0 1311 1528 65577852 65577635 6.840000e-77 298.0
19 TraesCS5A01G121800 chr4D 100.000 28 0 0 1814 1841 65577310 65577283 6.000000e-03 52.8
20 TraesCS5A01G121800 chr7B 92.650 449 29 3 1 448 136881745 136881300 0.000000e+00 643.0
21 TraesCS5A01G121800 chr4B 90.826 218 20 0 1311 1528 96272103 96271886 3.180000e-75 292.0
22 TraesCS5A01G121800 chr4B 84.211 57 6 2 1814 1867 96271561 96271505 6.000000e-03 52.8
23 TraesCS5A01G121800 chr6D 89.474 209 22 0 1326 1534 393936197 393935989 6.940000e-67 265.0
24 TraesCS5A01G121800 chr6A 89.474 209 22 0 1326 1534 540145649 540145441 6.940000e-67 265.0
25 TraesCS5A01G121800 chr6B 87.838 222 24 2 1316 1534 589129246 589129025 1.160000e-64 257.0
26 TraesCS5A01G121800 chr3B 88.172 186 22 0 1327 1512 718850346 718850531 4.230000e-54 222.0
27 TraesCS5A01G121800 chr1B 78.302 106 20 3 3087 3189 141109141 141109036 7.550000e-07 65.8
28 TraesCS5A01G121800 chr7D 80.460 87 14 3 3091 3176 295043473 295043389 2.720000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G121800 chr5A 264420168 264423427 3259 False 6021.0 6021 100.000 1 3260 1 chr5A.!!$F1 3259
1 TraesCS5A01G121800 chr5D 205994940 205997845 2905 False 2045.5 3980 91.160 509 3223 2 chr5D.!!$F1 2714
2 TraesCS5A01G121800 chr5B 206100824 206103069 2245 True 3212.0 3212 92.627 692 2938 1 chr5B.!!$R1 2246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.038709 TTTTGCTCAATTTCCCGCCG 60.039 50.0 0.0 0.0 0.0 6.46 F
760 762 0.793617 TCTCTCTCCCCTTCCCTGTT 59.206 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1801 0.179111 CGTTAGGATCTTGCCGCTCA 60.179 55.0 0.00 0.00 0.00 4.26 R
2577 2642 0.613853 CCTGAGTCGGGACCCACTAA 60.614 60.0 13.26 5.72 29.82 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.658179 TCAAGTATAGCATGCATAGTTTAGC 57.342 36.000 21.98 0.00 0.00 3.09
25 26 7.216494 TCAAGTATAGCATGCATAGTTTAGCA 58.784 34.615 21.98 0.00 45.92 3.49
26 27 7.386025 TCAAGTATAGCATGCATAGTTTAGCAG 59.614 37.037 21.98 11.31 44.94 4.24
27 28 6.763355 AGTATAGCATGCATAGTTTAGCAGT 58.237 36.000 21.98 0.00 44.94 4.40
28 29 7.896811 AGTATAGCATGCATAGTTTAGCAGTA 58.103 34.615 21.98 0.00 44.94 2.74
29 30 8.031864 AGTATAGCATGCATAGTTTAGCAGTAG 58.968 37.037 21.98 0.00 44.94 2.57
30 31 5.028549 AGCATGCATAGTTTAGCAGTAGT 57.971 39.130 21.98 0.00 44.94 2.73
31 32 6.161855 AGCATGCATAGTTTAGCAGTAGTA 57.838 37.500 21.98 0.00 44.94 1.82
32 33 6.582636 AGCATGCATAGTTTAGCAGTAGTAA 58.417 36.000 21.98 0.00 44.94 2.24
33 34 7.220030 AGCATGCATAGTTTAGCAGTAGTAAT 58.780 34.615 21.98 0.00 44.94 1.89
34 35 8.367911 AGCATGCATAGTTTAGCAGTAGTAATA 58.632 33.333 21.98 0.00 44.94 0.98
35 36 9.155975 GCATGCATAGTTTAGCAGTAGTAATAT 57.844 33.333 14.21 0.00 44.94 1.28
60 61 8.839310 TTCTTTTGTCAATTTTTCCAAACAGA 57.161 26.923 0.00 0.00 0.00 3.41
61 62 9.447157 TTCTTTTGTCAATTTTTCCAAACAGAT 57.553 25.926 0.00 0.00 0.00 2.90
67 68 9.585099 TGTCAATTTTTCCAAACAGATATATGC 57.415 29.630 0.00 0.00 0.00 3.14
68 69 9.585099 GTCAATTTTTCCAAACAGATATATGCA 57.415 29.630 0.00 0.00 0.00 3.96
69 70 9.806203 TCAATTTTTCCAAACAGATATATGCAG 57.194 29.630 0.00 0.00 0.00 4.41
70 71 8.545420 CAATTTTTCCAAACAGATATATGCAGC 58.455 33.333 0.00 0.00 0.00 5.25
71 72 6.772360 TTTTCCAAACAGATATATGCAGCA 57.228 33.333 0.00 0.00 0.00 4.41
72 73 6.772360 TTTCCAAACAGATATATGCAGCAA 57.228 33.333 0.00 0.00 0.00 3.91
73 74 5.756195 TCCAAACAGATATATGCAGCAAC 57.244 39.130 0.00 0.00 0.00 4.17
74 75 4.580167 TCCAAACAGATATATGCAGCAACC 59.420 41.667 0.00 0.00 0.00 3.77
75 76 4.338964 CCAAACAGATATATGCAGCAACCA 59.661 41.667 0.00 0.00 0.00 3.67
76 77 5.163530 CCAAACAGATATATGCAGCAACCAA 60.164 40.000 0.00 0.00 0.00 3.67
77 78 6.331845 CAAACAGATATATGCAGCAACCAAA 58.668 36.000 0.00 0.00 0.00 3.28
78 79 6.528537 AACAGATATATGCAGCAACCAAAA 57.471 33.333 0.00 0.00 0.00 2.44
79 80 6.140303 ACAGATATATGCAGCAACCAAAAG 57.860 37.500 0.00 0.00 0.00 2.27
80 81 5.887598 ACAGATATATGCAGCAACCAAAAGA 59.112 36.000 0.00 0.00 0.00 2.52
81 82 6.548622 ACAGATATATGCAGCAACCAAAAGAT 59.451 34.615 0.00 0.00 0.00 2.40
82 83 6.861572 CAGATATATGCAGCAACCAAAAGATG 59.138 38.462 0.00 0.00 0.00 2.90
83 84 6.774170 AGATATATGCAGCAACCAAAAGATGA 59.226 34.615 0.00 0.00 0.00 2.92
84 85 5.664294 ATATGCAGCAACCAAAAGATGAA 57.336 34.783 0.00 0.00 0.00 2.57
85 86 4.546829 ATGCAGCAACCAAAAGATGAAT 57.453 36.364 0.00 0.00 0.00 2.57
86 87 4.339872 TGCAGCAACCAAAAGATGAATT 57.660 36.364 0.00 0.00 0.00 2.17
87 88 5.465532 TGCAGCAACCAAAAGATGAATTA 57.534 34.783 0.00 0.00 0.00 1.40
88 89 5.851720 TGCAGCAACCAAAAGATGAATTAA 58.148 33.333 0.00 0.00 0.00 1.40
89 90 6.286758 TGCAGCAACCAAAAGATGAATTAAA 58.713 32.000 0.00 0.00 0.00 1.52
90 91 6.424509 TGCAGCAACCAAAAGATGAATTAAAG 59.575 34.615 0.00 0.00 0.00 1.85
91 92 6.128472 GCAGCAACCAAAAGATGAATTAAAGG 60.128 38.462 0.00 0.00 0.00 3.11
92 93 7.153985 CAGCAACCAAAAGATGAATTAAAGGA 58.846 34.615 0.00 0.00 0.00 3.36
93 94 7.330208 CAGCAACCAAAAGATGAATTAAAGGAG 59.670 37.037 0.00 0.00 0.00 3.69
94 95 7.233348 AGCAACCAAAAGATGAATTAAAGGAGA 59.767 33.333 0.00 0.00 0.00 3.71
95 96 7.329471 GCAACCAAAAGATGAATTAAAGGAGAC 59.671 37.037 0.00 0.00 0.00 3.36
96 97 8.359642 CAACCAAAAGATGAATTAAAGGAGACA 58.640 33.333 0.00 0.00 0.00 3.41
97 98 7.886338 ACCAAAAGATGAATTAAAGGAGACAC 58.114 34.615 0.00 0.00 0.00 3.67
98 99 7.505585 ACCAAAAGATGAATTAAAGGAGACACA 59.494 33.333 0.00 0.00 0.00 3.72
99 100 8.359642 CCAAAAGATGAATTAAAGGAGACACAA 58.640 33.333 0.00 0.00 0.00 3.33
100 101 9.748708 CAAAAGATGAATTAAAGGAGACACAAA 57.251 29.630 0.00 0.00 0.00 2.83
101 102 9.750125 AAAAGATGAATTAAAGGAGACACAAAC 57.250 29.630 0.00 0.00 0.00 2.93
102 103 8.463930 AAGATGAATTAAAGGAGACACAAACA 57.536 30.769 0.00 0.00 0.00 2.83
103 104 8.641498 AGATGAATTAAAGGAGACACAAACAT 57.359 30.769 0.00 0.00 0.00 2.71
104 105 8.734386 AGATGAATTAAAGGAGACACAAACATC 58.266 33.333 0.00 0.00 0.00 3.06
105 106 7.815840 TGAATTAAAGGAGACACAAACATCA 57.184 32.000 0.00 0.00 0.00 3.07
106 107 8.231692 TGAATTAAAGGAGACACAAACATCAA 57.768 30.769 0.00 0.00 0.00 2.57
107 108 8.134895 TGAATTAAAGGAGACACAAACATCAAC 58.865 33.333 0.00 0.00 0.00 3.18
108 109 7.581213 ATTAAAGGAGACACAAACATCAACA 57.419 32.000 0.00 0.00 0.00 3.33
109 110 5.505173 AAAGGAGACACAAACATCAACAG 57.495 39.130 0.00 0.00 0.00 3.16
110 111 4.422073 AGGAGACACAAACATCAACAGA 57.578 40.909 0.00 0.00 0.00 3.41
111 112 4.780815 AGGAGACACAAACATCAACAGAA 58.219 39.130 0.00 0.00 0.00 3.02
112 113 4.818546 AGGAGACACAAACATCAACAGAAG 59.181 41.667 0.00 0.00 0.00 2.85
113 114 4.023707 GGAGACACAAACATCAACAGAAGG 60.024 45.833 0.00 0.00 0.00 3.46
114 115 4.780815 AGACACAAACATCAACAGAAGGA 58.219 39.130 0.00 0.00 0.00 3.36
115 116 5.192927 AGACACAAACATCAACAGAAGGAA 58.807 37.500 0.00 0.00 0.00 3.36
116 117 5.652014 AGACACAAACATCAACAGAAGGAAA 59.348 36.000 0.00 0.00 0.00 3.13
117 118 6.322201 AGACACAAACATCAACAGAAGGAAAT 59.678 34.615 0.00 0.00 0.00 2.17
118 119 7.502226 AGACACAAACATCAACAGAAGGAAATA 59.498 33.333 0.00 0.00 0.00 1.40
119 120 8.181904 ACACAAACATCAACAGAAGGAAATAT 57.818 30.769 0.00 0.00 0.00 1.28
120 121 8.084073 ACACAAACATCAACAGAAGGAAATATG 58.916 33.333 0.00 0.00 0.00 1.78
121 122 7.543172 CACAAACATCAACAGAAGGAAATATGG 59.457 37.037 0.00 0.00 0.00 2.74
122 123 6.780457 AACATCAACAGAAGGAAATATGGG 57.220 37.500 0.00 0.00 0.00 4.00
123 124 6.078456 ACATCAACAGAAGGAAATATGGGA 57.922 37.500 0.00 0.00 0.00 4.37
124 125 6.125029 ACATCAACAGAAGGAAATATGGGAG 58.875 40.000 0.00 0.00 0.00 4.30
125 126 5.116084 TCAACAGAAGGAAATATGGGAGG 57.884 43.478 0.00 0.00 0.00 4.30
126 127 4.788075 TCAACAGAAGGAAATATGGGAGGA 59.212 41.667 0.00 0.00 0.00 3.71
127 128 5.252863 TCAACAGAAGGAAATATGGGAGGAA 59.747 40.000 0.00 0.00 0.00 3.36
128 129 5.379706 ACAGAAGGAAATATGGGAGGAAG 57.620 43.478 0.00 0.00 0.00 3.46
129 130 4.140536 CAGAAGGAAATATGGGAGGAAGC 58.859 47.826 0.00 0.00 0.00 3.86
130 131 4.050757 AGAAGGAAATATGGGAGGAAGCT 58.949 43.478 0.00 0.00 0.00 3.74
131 132 4.480166 AGAAGGAAATATGGGAGGAAGCTT 59.520 41.667 0.00 0.00 0.00 3.74
132 133 4.888626 AGGAAATATGGGAGGAAGCTTT 57.111 40.909 0.00 0.00 0.00 3.51
133 134 5.212472 AGGAAATATGGGAGGAAGCTTTT 57.788 39.130 0.00 0.00 0.00 2.27
134 135 5.204292 AGGAAATATGGGAGGAAGCTTTTC 58.796 41.667 0.00 1.62 0.00 2.29
135 136 4.956075 GGAAATATGGGAGGAAGCTTTTCA 59.044 41.667 0.00 0.00 0.00 2.69
136 137 5.163509 GGAAATATGGGAGGAAGCTTTTCAC 60.164 44.000 0.00 3.69 0.00 3.18
137 138 2.978156 ATGGGAGGAAGCTTTTCACA 57.022 45.000 16.28 16.28 0.00 3.58
138 139 2.746279 TGGGAGGAAGCTTTTCACAA 57.254 45.000 12.79 0.26 0.00 3.33
139 140 3.025322 TGGGAGGAAGCTTTTCACAAA 57.975 42.857 12.79 0.00 0.00 2.83
140 141 3.575805 TGGGAGGAAGCTTTTCACAAAT 58.424 40.909 12.79 0.00 0.00 2.32
141 142 4.735369 TGGGAGGAAGCTTTTCACAAATA 58.265 39.130 12.79 0.00 0.00 1.40
142 143 4.522789 TGGGAGGAAGCTTTTCACAAATAC 59.477 41.667 12.79 0.00 0.00 1.89
143 144 4.767409 GGGAGGAAGCTTTTCACAAATACT 59.233 41.667 0.00 0.00 0.00 2.12
144 145 5.944007 GGGAGGAAGCTTTTCACAAATACTA 59.056 40.000 0.00 0.00 0.00 1.82
145 146 6.603599 GGGAGGAAGCTTTTCACAAATACTAT 59.396 38.462 0.00 0.00 0.00 2.12
146 147 7.415653 GGGAGGAAGCTTTTCACAAATACTATG 60.416 40.741 0.00 0.00 0.00 2.23
147 148 7.121315 GGAGGAAGCTTTTCACAAATACTATGT 59.879 37.037 0.00 0.00 0.00 2.29
148 149 8.409358 AGGAAGCTTTTCACAAATACTATGTT 57.591 30.769 0.00 0.00 0.00 2.71
149 150 8.515414 AGGAAGCTTTTCACAAATACTATGTTC 58.485 33.333 0.00 0.00 0.00 3.18
150 151 7.481798 GGAAGCTTTTCACAAATACTATGTTCG 59.518 37.037 0.00 0.00 0.00 3.95
151 152 7.435068 AGCTTTTCACAAATACTATGTTCGT 57.565 32.000 0.00 0.00 0.00 3.85
152 153 8.542497 AGCTTTTCACAAATACTATGTTCGTA 57.458 30.769 0.00 0.00 0.00 3.43
153 154 8.995220 AGCTTTTCACAAATACTATGTTCGTAA 58.005 29.630 0.00 0.00 0.00 3.18
154 155 9.769093 GCTTTTCACAAATACTATGTTCGTAAT 57.231 29.630 0.00 0.00 0.00 1.89
171 172 9.907576 TGTTCGTAATGTTTAAATTTTTGCTTG 57.092 25.926 0.00 0.00 0.00 4.01
192 193 9.109393 TGCTTGATATATAAAACTCTGACAACC 57.891 33.333 0.00 0.00 0.00 3.77
193 194 9.109393 GCTTGATATATAAAACTCTGACAACCA 57.891 33.333 0.00 0.00 0.00 3.67
195 196 8.958119 TGATATATAAAACTCTGACAACCACC 57.042 34.615 0.00 0.00 0.00 4.61
196 197 7.990886 TGATATATAAAACTCTGACAACCACCC 59.009 37.037 0.00 0.00 0.00 4.61
197 198 4.724279 ATAAAACTCTGACAACCACCCT 57.276 40.909 0.00 0.00 0.00 4.34
198 199 2.640316 AAACTCTGACAACCACCCTC 57.360 50.000 0.00 0.00 0.00 4.30
199 200 1.807814 AACTCTGACAACCACCCTCT 58.192 50.000 0.00 0.00 0.00 3.69
200 201 1.343069 ACTCTGACAACCACCCTCTC 58.657 55.000 0.00 0.00 0.00 3.20
201 202 1.342074 CTCTGACAACCACCCTCTCA 58.658 55.000 0.00 0.00 0.00 3.27
202 203 1.905215 CTCTGACAACCACCCTCTCAT 59.095 52.381 0.00 0.00 0.00 2.90
203 204 3.099905 CTCTGACAACCACCCTCTCATA 58.900 50.000 0.00 0.00 0.00 2.15
204 205 3.708631 CTCTGACAACCACCCTCTCATAT 59.291 47.826 0.00 0.00 0.00 1.78
205 206 4.104086 TCTGACAACCACCCTCTCATATT 58.896 43.478 0.00 0.00 0.00 1.28
206 207 4.536090 TCTGACAACCACCCTCTCATATTT 59.464 41.667 0.00 0.00 0.00 1.40
207 208 5.724370 TCTGACAACCACCCTCTCATATTTA 59.276 40.000 0.00 0.00 0.00 1.40
208 209 6.386927 TCTGACAACCACCCTCTCATATTTAT 59.613 38.462 0.00 0.00 0.00 1.40
209 210 6.969043 TGACAACCACCCTCTCATATTTATT 58.031 36.000 0.00 0.00 0.00 1.40
210 211 6.828273 TGACAACCACCCTCTCATATTTATTG 59.172 38.462 0.00 0.00 0.00 1.90
211 212 5.594317 ACAACCACCCTCTCATATTTATTGC 59.406 40.000 0.00 0.00 0.00 3.56
212 213 5.387113 ACCACCCTCTCATATTTATTGCA 57.613 39.130 0.00 0.00 0.00 4.08
213 214 5.133221 ACCACCCTCTCATATTTATTGCAC 58.867 41.667 0.00 0.00 0.00 4.57
214 215 5.103940 ACCACCCTCTCATATTTATTGCACT 60.104 40.000 0.00 0.00 0.00 4.40
215 216 5.240183 CCACCCTCTCATATTTATTGCACTG 59.760 44.000 0.00 0.00 0.00 3.66
216 217 5.824624 CACCCTCTCATATTTATTGCACTGT 59.175 40.000 0.00 0.00 0.00 3.55
217 218 6.319658 CACCCTCTCATATTTATTGCACTGTT 59.680 38.462 0.00 0.00 0.00 3.16
218 219 6.891908 ACCCTCTCATATTTATTGCACTGTTT 59.108 34.615 0.00 0.00 0.00 2.83
219 220 8.052748 ACCCTCTCATATTTATTGCACTGTTTA 58.947 33.333 0.00 0.00 0.00 2.01
220 221 8.562892 CCCTCTCATATTTATTGCACTGTTTAG 58.437 37.037 0.00 0.00 0.00 1.85
221 222 9.330063 CCTCTCATATTTATTGCACTGTTTAGA 57.670 33.333 0.00 0.00 0.00 2.10
223 224 9.665719 TCTCATATTTATTGCACTGTTTAGACA 57.334 29.630 0.00 0.00 0.00 3.41
232 233 7.754069 TTGCACTGTTTAGACAAGAAATTTG 57.246 32.000 0.00 0.00 34.85 2.32
233 234 6.272318 TGCACTGTTTAGACAAGAAATTTGG 58.728 36.000 0.00 0.00 34.85 3.28
234 235 6.096141 TGCACTGTTTAGACAAGAAATTTGGA 59.904 34.615 0.00 0.00 34.85 3.53
235 236 6.638468 GCACTGTTTAGACAAGAAATTTGGAG 59.362 38.462 0.00 0.00 34.85 3.86
236 237 7.468631 GCACTGTTTAGACAAGAAATTTGGAGA 60.469 37.037 0.00 0.00 34.85 3.71
237 238 8.405531 CACTGTTTAGACAAGAAATTTGGAGAA 58.594 33.333 0.00 0.00 34.85 2.87
238 239 8.966868 ACTGTTTAGACAAGAAATTTGGAGAAA 58.033 29.630 0.00 0.00 34.85 2.52
239 240 9.455847 CTGTTTAGACAAGAAATTTGGAGAAAG 57.544 33.333 0.00 0.00 34.85 2.62
240 241 7.920682 TGTTTAGACAAGAAATTTGGAGAAAGC 59.079 33.333 0.00 0.00 31.49 3.51
241 242 5.113502 AGACAAGAAATTTGGAGAAAGCG 57.886 39.130 0.00 0.00 0.00 4.68
242 243 4.821805 AGACAAGAAATTTGGAGAAAGCGA 59.178 37.500 0.00 0.00 0.00 4.93
243 244 5.299279 AGACAAGAAATTTGGAGAAAGCGAA 59.701 36.000 0.00 0.00 0.00 4.70
244 245 5.901552 ACAAGAAATTTGGAGAAAGCGAAA 58.098 33.333 0.00 0.00 0.00 3.46
245 246 6.337356 ACAAGAAATTTGGAGAAAGCGAAAA 58.663 32.000 0.00 0.00 0.00 2.29
246 247 6.255670 ACAAGAAATTTGGAGAAAGCGAAAAC 59.744 34.615 0.00 0.00 0.00 2.43
247 248 5.901552 AGAAATTTGGAGAAAGCGAAAACA 58.098 33.333 0.00 0.00 0.00 2.83
248 249 6.515832 AGAAATTTGGAGAAAGCGAAAACAT 58.484 32.000 0.00 0.00 0.00 2.71
249 250 6.421801 AGAAATTTGGAGAAAGCGAAAACATG 59.578 34.615 0.00 0.00 0.00 3.21
250 251 3.641437 TTGGAGAAAGCGAAAACATGG 57.359 42.857 0.00 0.00 0.00 3.66
251 252 2.857483 TGGAGAAAGCGAAAACATGGA 58.143 42.857 0.00 0.00 0.00 3.41
252 253 2.813754 TGGAGAAAGCGAAAACATGGAG 59.186 45.455 0.00 0.00 0.00 3.86
253 254 3.074412 GGAGAAAGCGAAAACATGGAGA 58.926 45.455 0.00 0.00 0.00 3.71
254 255 3.502211 GGAGAAAGCGAAAACATGGAGAA 59.498 43.478 0.00 0.00 0.00 2.87
255 256 4.023193 GGAGAAAGCGAAAACATGGAGAAA 60.023 41.667 0.00 0.00 0.00 2.52
256 257 5.507315 GGAGAAAGCGAAAACATGGAGAAAA 60.507 40.000 0.00 0.00 0.00 2.29
257 258 5.523369 AGAAAGCGAAAACATGGAGAAAAG 58.477 37.500 0.00 0.00 0.00 2.27
258 259 3.923017 AGCGAAAACATGGAGAAAAGG 57.077 42.857 0.00 0.00 0.00 3.11
259 260 2.558359 AGCGAAAACATGGAGAAAAGGG 59.442 45.455 0.00 0.00 0.00 3.95
260 261 2.556622 GCGAAAACATGGAGAAAAGGGA 59.443 45.455 0.00 0.00 0.00 4.20
261 262 3.193479 GCGAAAACATGGAGAAAAGGGAT 59.807 43.478 0.00 0.00 0.00 3.85
262 263 4.737054 CGAAAACATGGAGAAAAGGGATG 58.263 43.478 0.00 0.00 0.00 3.51
263 264 4.458989 CGAAAACATGGAGAAAAGGGATGA 59.541 41.667 0.00 0.00 0.00 2.92
264 265 5.126061 CGAAAACATGGAGAAAAGGGATGAT 59.874 40.000 0.00 0.00 0.00 2.45
265 266 6.350445 CGAAAACATGGAGAAAAGGGATGATT 60.350 38.462 0.00 0.00 0.00 2.57
266 267 5.927281 AACATGGAGAAAAGGGATGATTG 57.073 39.130 0.00 0.00 0.00 2.67
267 268 4.939255 ACATGGAGAAAAGGGATGATTGT 58.061 39.130 0.00 0.00 0.00 2.71
268 269 6.078456 ACATGGAGAAAAGGGATGATTGTA 57.922 37.500 0.00 0.00 0.00 2.41
269 270 6.493166 ACATGGAGAAAAGGGATGATTGTAA 58.507 36.000 0.00 0.00 0.00 2.41
270 271 6.953520 ACATGGAGAAAAGGGATGATTGTAAA 59.046 34.615 0.00 0.00 0.00 2.01
271 272 7.454380 ACATGGAGAAAAGGGATGATTGTAAAA 59.546 33.333 0.00 0.00 0.00 1.52
272 273 7.466746 TGGAGAAAAGGGATGATTGTAAAAG 57.533 36.000 0.00 0.00 0.00 2.27
273 274 7.237982 TGGAGAAAAGGGATGATTGTAAAAGA 58.762 34.615 0.00 0.00 0.00 2.52
274 275 7.728083 TGGAGAAAAGGGATGATTGTAAAAGAA 59.272 33.333 0.00 0.00 0.00 2.52
275 276 8.246871 GGAGAAAAGGGATGATTGTAAAAGAAG 58.753 37.037 0.00 0.00 0.00 2.85
276 277 8.127150 AGAAAAGGGATGATTGTAAAAGAAGG 57.873 34.615 0.00 0.00 0.00 3.46
277 278 7.730332 AGAAAAGGGATGATTGTAAAAGAAGGT 59.270 33.333 0.00 0.00 0.00 3.50
278 279 7.855784 AAAGGGATGATTGTAAAAGAAGGTT 57.144 32.000 0.00 0.00 0.00 3.50
279 280 7.468141 AAGGGATGATTGTAAAAGAAGGTTC 57.532 36.000 0.00 0.00 0.00 3.62
280 281 6.794534 AGGGATGATTGTAAAAGAAGGTTCT 58.205 36.000 0.00 0.00 39.74 3.01
282 283 8.390921 AGGGATGATTGTAAAAGAAGGTTCTTA 58.609 33.333 5.41 0.00 46.22 2.10
283 284 9.020731 GGGATGATTGTAAAAGAAGGTTCTTAA 57.979 33.333 5.41 0.00 46.22 1.85
324 325 7.429636 TTCCACTATAAATAAAGGTATGCGC 57.570 36.000 0.00 0.00 0.00 6.09
325 326 6.765403 TCCACTATAAATAAAGGTATGCGCT 58.235 36.000 9.73 0.00 0.00 5.92
326 327 7.221450 TCCACTATAAATAAAGGTATGCGCTT 58.779 34.615 9.73 4.59 0.00 4.68
327 328 8.369424 TCCACTATAAATAAAGGTATGCGCTTA 58.631 33.333 9.73 3.30 0.00 3.09
328 329 8.995220 CCACTATAAATAAAGGTATGCGCTTAA 58.005 33.333 9.73 0.00 0.00 1.85
333 334 7.801716 AAATAAAGGTATGCGCTTAATCTGA 57.198 32.000 9.73 1.45 0.00 3.27
334 335 7.801716 AATAAAGGTATGCGCTTAATCTGAA 57.198 32.000 9.73 1.35 0.00 3.02
335 336 7.986085 ATAAAGGTATGCGCTTAATCTGAAT 57.014 32.000 9.73 3.43 0.00 2.57
336 337 5.679734 AAGGTATGCGCTTAATCTGAATG 57.320 39.130 9.73 0.00 0.00 2.67
337 338 4.960938 AGGTATGCGCTTAATCTGAATGA 58.039 39.130 9.73 0.00 0.00 2.57
338 339 5.555017 AGGTATGCGCTTAATCTGAATGAT 58.445 37.500 9.73 0.00 36.89 2.45
339 340 6.701340 AGGTATGCGCTTAATCTGAATGATA 58.299 36.000 9.73 0.00 34.45 2.15
340 341 7.161404 AGGTATGCGCTTAATCTGAATGATAA 58.839 34.615 9.73 0.00 34.45 1.75
341 342 7.826252 AGGTATGCGCTTAATCTGAATGATAAT 59.174 33.333 9.73 0.00 34.45 1.28
342 343 7.907045 GGTATGCGCTTAATCTGAATGATAATG 59.093 37.037 9.73 0.00 34.45 1.90
343 344 6.866010 TGCGCTTAATCTGAATGATAATGT 57.134 33.333 9.73 0.00 34.45 2.71
344 345 7.263100 TGCGCTTAATCTGAATGATAATGTT 57.737 32.000 9.73 0.00 34.45 2.71
345 346 7.355017 TGCGCTTAATCTGAATGATAATGTTC 58.645 34.615 9.73 0.00 34.45 3.18
346 347 7.227314 TGCGCTTAATCTGAATGATAATGTTCT 59.773 33.333 9.73 0.00 34.45 3.01
347 348 8.072567 GCGCTTAATCTGAATGATAATGTTCTT 58.927 33.333 0.00 0.00 34.45 2.52
348 349 9.941664 CGCTTAATCTGAATGATAATGTTCTTT 57.058 29.630 0.00 0.00 34.45 2.52
423 424 2.162319 TTTTTGCTCAATTTCCCGCC 57.838 45.000 0.00 0.00 0.00 6.13
424 425 0.038709 TTTTGCTCAATTTCCCGCCG 60.039 50.000 0.00 0.00 0.00 6.46
425 426 2.485188 TTTGCTCAATTTCCCGCCGC 62.485 55.000 0.00 0.00 0.00 6.53
426 427 3.439540 GCTCAATTTCCCGCCGCA 61.440 61.111 0.00 0.00 0.00 5.69
427 428 2.988688 GCTCAATTTCCCGCCGCAA 61.989 57.895 0.00 0.00 0.00 4.85
428 429 1.154035 CTCAATTTCCCGCCGCAAC 60.154 57.895 0.00 0.00 0.00 4.17
429 430 2.503809 CAATTTCCCGCCGCAACG 60.504 61.111 0.00 0.00 0.00 4.10
430 431 4.413800 AATTTCCCGCCGCAACGC 62.414 61.111 0.00 0.00 0.00 4.84
442 443 2.414179 CAACGCGCGGGGTATCTA 59.586 61.111 35.22 0.00 0.00 1.98
443 444 1.947642 CAACGCGCGGGGTATCTAC 60.948 63.158 35.22 0.00 0.00 2.59
444 445 2.123428 AACGCGCGGGGTATCTACT 61.123 57.895 35.22 5.42 0.00 2.57
445 446 0.819259 AACGCGCGGGGTATCTACTA 60.819 55.000 35.22 0.00 0.00 1.82
446 447 1.233285 ACGCGCGGGGTATCTACTAG 61.233 60.000 35.22 0.47 0.00 2.57
447 448 1.233285 CGCGCGGGGTATCTACTAGT 61.233 60.000 24.84 0.00 0.00 2.57
448 449 0.957362 GCGCGGGGTATCTACTAGTT 59.043 55.000 8.83 0.00 0.00 2.24
449 450 1.339291 GCGCGGGGTATCTACTAGTTT 59.661 52.381 8.83 0.00 0.00 2.66
450 451 2.554032 GCGCGGGGTATCTACTAGTTTA 59.446 50.000 8.83 0.00 0.00 2.01
451 452 3.610349 GCGCGGGGTATCTACTAGTTTAC 60.610 52.174 8.83 1.36 0.00 2.01
452 453 3.817647 CGCGGGGTATCTACTAGTTTACT 59.182 47.826 0.00 0.00 0.00 2.24
453 454 4.997395 CGCGGGGTATCTACTAGTTTACTA 59.003 45.833 0.00 0.00 0.00 1.82
454 455 5.645497 CGCGGGGTATCTACTAGTTTACTAT 59.355 44.000 0.00 0.00 0.00 2.12
455 456 6.818644 CGCGGGGTATCTACTAGTTTACTATA 59.181 42.308 0.00 0.00 0.00 1.31
456 457 7.497249 CGCGGGGTATCTACTAGTTTACTATAT 59.503 40.741 0.00 0.00 0.00 0.86
457 458 9.183368 GCGGGGTATCTACTAGTTTACTATATT 57.817 37.037 0.00 0.00 0.00 1.28
476 477 9.383519 ACTATATTTTGTCAGACACATACAAGG 57.616 33.333 1.52 0.00 34.80 3.61
477 478 4.829064 TTTTGTCAGACACATACAAGGC 57.171 40.909 1.52 0.00 34.80 4.35
478 479 3.769739 TTGTCAGACACATACAAGGCT 57.230 42.857 1.52 0.00 33.90 4.58
479 480 3.769739 TGTCAGACACATACAAGGCTT 57.230 42.857 0.00 0.00 0.00 4.35
480 481 4.882842 TGTCAGACACATACAAGGCTTA 57.117 40.909 0.00 0.00 0.00 3.09
481 482 4.566004 TGTCAGACACATACAAGGCTTAC 58.434 43.478 0.00 0.00 0.00 2.34
482 483 4.039852 TGTCAGACACATACAAGGCTTACA 59.960 41.667 0.00 0.00 0.00 2.41
483 484 4.627467 GTCAGACACATACAAGGCTTACAG 59.373 45.833 0.00 0.00 0.00 2.74
484 485 4.283467 TCAGACACATACAAGGCTTACAGT 59.717 41.667 0.00 0.00 0.00 3.55
485 486 4.389992 CAGACACATACAAGGCTTACAGTG 59.610 45.833 15.31 15.31 0.00 3.66
486 487 4.040461 AGACACATACAAGGCTTACAGTGT 59.960 41.667 19.82 19.82 41.17 3.55
487 488 4.315803 ACACATACAAGGCTTACAGTGTC 58.684 43.478 16.26 0.00 34.18 3.67
488 489 3.367932 CACATACAAGGCTTACAGTGTCG 59.632 47.826 0.00 0.00 0.00 4.35
489 490 3.006537 ACATACAAGGCTTACAGTGTCGT 59.993 43.478 0.00 0.00 0.00 4.34
490 491 1.865865 ACAAGGCTTACAGTGTCGTG 58.134 50.000 0.00 0.00 0.00 4.35
491 492 1.411246 ACAAGGCTTACAGTGTCGTGA 59.589 47.619 0.00 0.00 0.00 4.35
492 493 2.037251 ACAAGGCTTACAGTGTCGTGAT 59.963 45.455 0.00 0.00 0.00 3.06
493 494 3.257375 ACAAGGCTTACAGTGTCGTGATA 59.743 43.478 0.00 0.00 0.00 2.15
494 495 4.242475 CAAGGCTTACAGTGTCGTGATAA 58.758 43.478 0.00 0.00 0.00 1.75
495 496 4.530710 AGGCTTACAGTGTCGTGATAAA 57.469 40.909 0.00 0.00 0.00 1.40
496 497 5.086104 AGGCTTACAGTGTCGTGATAAAT 57.914 39.130 0.00 0.00 0.00 1.40
497 498 6.216801 AGGCTTACAGTGTCGTGATAAATA 57.783 37.500 0.00 0.00 0.00 1.40
498 499 6.817184 AGGCTTACAGTGTCGTGATAAATAT 58.183 36.000 0.00 0.00 0.00 1.28
499 500 7.272978 AGGCTTACAGTGTCGTGATAAATATT 58.727 34.615 0.00 0.00 0.00 1.28
500 501 7.769044 AGGCTTACAGTGTCGTGATAAATATTT 59.231 33.333 0.00 5.89 0.00 1.40
501 502 8.062448 GGCTTACAGTGTCGTGATAAATATTTC 58.938 37.037 3.39 0.00 0.00 2.17
502 503 8.600625 GCTTACAGTGTCGTGATAAATATTTCA 58.399 33.333 3.39 0.00 0.00 2.69
505 506 8.547967 ACAGTGTCGTGATAAATATTTCAACT 57.452 30.769 3.39 0.00 0.00 3.16
506 507 8.999431 ACAGTGTCGTGATAAATATTTCAACTT 58.001 29.630 3.39 0.00 0.00 2.66
507 508 9.825972 CAGTGTCGTGATAAATATTTCAACTTT 57.174 29.630 3.39 0.00 0.00 2.66
510 511 9.605955 TGTCGTGATAAATATTTCAACTTTGTG 57.394 29.630 3.39 0.00 0.00 3.33
528 529 8.213518 ACTTTGTGTTGGCTATGTCTATAATG 57.786 34.615 0.00 0.00 0.00 1.90
529 530 6.618287 TTGTGTTGGCTATGTCTATAATGC 57.382 37.500 0.00 0.00 0.00 3.56
559 560 9.725019 CATTAATTAGACATAATCAGCCACCTA 57.275 33.333 0.00 0.00 31.02 3.08
577 578 5.286438 CACCTACCATCGACGAATCAATTA 58.714 41.667 0.00 0.00 0.00 1.40
656 658 3.943671 TGTGGAAAAGGAAAGGAGACA 57.056 42.857 0.00 0.00 0.00 3.41
657 659 4.453480 TGTGGAAAAGGAAAGGAGACAT 57.547 40.909 0.00 0.00 0.00 3.06
740 742 4.043100 GAAACCCCACCCCTCCCG 62.043 72.222 0.00 0.00 0.00 5.14
741 743 4.932605 AAACCCCACCCCTCCCGT 62.933 66.667 0.00 0.00 0.00 5.28
760 762 0.793617 TCTCTCTCCCCTTCCCTGTT 59.206 55.000 0.00 0.00 0.00 3.16
776 790 2.103094 CCTGTTTGTCTGTCTGTCTCCA 59.897 50.000 0.00 0.00 0.00 3.86
793 807 1.231641 CATCTCTCCCCTCCTCCGT 59.768 63.158 0.00 0.00 0.00 4.69
1158 1204 1.206132 CACCACCCATTCTACTACGCA 59.794 52.381 0.00 0.00 0.00 5.24
1230 1276 2.173758 TTGGGTCGCTCGCCATAACA 62.174 55.000 5.44 0.00 0.00 2.41
1701 1747 2.481471 GCCCCAGGACGCAAATAGC 61.481 63.158 0.00 0.00 40.87 2.97
1710 1756 2.478033 CGCAAATAGCCCCGGTTCC 61.478 63.158 0.00 0.00 41.38 3.62
2105 2151 1.553706 GGTGGAGGTACGGAAGAAGA 58.446 55.000 0.00 0.00 0.00 2.87
2106 2152 1.477295 GGTGGAGGTACGGAAGAAGAG 59.523 57.143 0.00 0.00 0.00 2.85
2107 2153 1.135053 GTGGAGGTACGGAAGAAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
2108 2154 1.183549 GGAGGTACGGAAGAAGAGCA 58.816 55.000 0.00 0.00 0.00 4.26
2109 2155 1.135333 GGAGGTACGGAAGAAGAGCAG 59.865 57.143 0.00 0.00 0.00 4.24
2110 2156 0.533032 AGGTACGGAAGAAGAGCAGC 59.467 55.000 0.00 0.00 0.00 5.25
2111 2157 0.246635 GGTACGGAAGAAGAGCAGCA 59.753 55.000 0.00 0.00 0.00 4.41
2112 2158 1.634702 GTACGGAAGAAGAGCAGCAG 58.365 55.000 0.00 0.00 0.00 4.24
2113 2159 0.108615 TACGGAAGAAGAGCAGCAGC 60.109 55.000 0.00 0.00 42.56 5.25
2148 2200 0.183492 AGGAGCAAGACCAGCAACAA 59.817 50.000 0.00 0.00 0.00 2.83
2239 2291 0.105778 CGGAGAAGAGGAAGGCCATC 59.894 60.000 5.01 0.92 36.29 3.51
2242 2294 1.884926 GAAGAGGAAGGCCATCGCG 60.885 63.158 5.01 0.00 36.29 5.87
2297 2349 5.139727 TGAAAAACTCTGAATCCACCATGT 58.860 37.500 0.00 0.00 0.00 3.21
2351 2416 0.111253 ATCGAATCCTGGGATTGGCC 59.889 55.000 18.27 0.00 43.98 5.36
2449 2514 5.179045 ACTGAATGCAAGAACAAGACTTG 57.821 39.130 13.77 13.77 44.92 3.16
2577 2642 1.406887 GGGTGCGATGATTGGTAGTGT 60.407 52.381 0.00 0.00 0.00 3.55
2663 2728 2.404265 TGATTTGTGCTGCAACTTCG 57.596 45.000 2.77 0.00 36.72 3.79
2664 2729 1.001487 TGATTTGTGCTGCAACTTCGG 60.001 47.619 2.77 0.00 36.72 4.30
2701 2766 3.979948 TCACCATTGTTTTCATGTGCTG 58.020 40.909 0.00 0.00 0.00 4.41
2761 2826 2.098117 GTGCTTGTGTCTCTTGCTGTTT 59.902 45.455 0.00 0.00 0.00 2.83
2762 2827 2.355756 TGCTTGTGTCTCTTGCTGTTTC 59.644 45.455 0.00 0.00 0.00 2.78
2763 2828 2.287248 GCTTGTGTCTCTTGCTGTTTCC 60.287 50.000 0.00 0.00 0.00 3.13
2794 2863 2.613691 GGCAATGATCCTGCTTTTGTG 58.386 47.619 14.52 0.00 39.82 3.33
2876 2945 9.965902 AGAAACATATTTCCTCTCATTTGTAGT 57.034 29.630 0.00 0.00 44.66 2.73
3020 3110 1.522668 CGTTTGATGCAGACCCTTCA 58.477 50.000 0.00 0.00 0.00 3.02
3055 3145 9.469807 TTTTTAAACACAATACAAATCGCAGAT 57.530 25.926 0.00 0.00 45.12 2.90
3073 3163 7.771183 TCGCAGATGCTCATATACATATACAA 58.229 34.615 2.95 0.00 39.32 2.41
3080 3170 8.379428 TGCTCATATACATATACAATCACCCT 57.621 34.615 0.00 0.00 0.00 4.34
3096 3194 7.073725 ACAATCACCCTTATGAATATACACCCT 59.926 37.037 0.00 0.00 30.82 4.34
3105 3203 9.480861 CTTATGAATATACACCCTCCTCTATGA 57.519 37.037 0.00 0.00 0.00 2.15
3114 3212 2.553466 CCCTCCTCTATGAGTACCTCCG 60.553 59.091 0.00 0.00 0.00 4.63
3125 3223 0.960286 GTACCTCCGAGATACTGGGC 59.040 60.000 0.00 0.00 29.20 5.36
3126 3224 0.536687 TACCTCCGAGATACTGGGCG 60.537 60.000 0.00 0.00 29.20 6.13
3127 3225 2.565645 CCTCCGAGATACTGGGCGG 61.566 68.421 0.00 0.00 44.83 6.13
3128 3226 3.214250 CTCCGAGATACTGGGCGGC 62.214 68.421 0.00 0.00 43.26 6.53
3129 3227 3.536917 CCGAGATACTGGGCGGCA 61.537 66.667 12.47 0.00 37.08 5.69
3130 3228 2.737180 CGAGATACTGGGCGGCAT 59.263 61.111 12.47 0.00 0.00 4.40
3131 3229 1.532604 CCGAGATACTGGGCGGCATA 61.533 60.000 12.47 0.00 37.08 3.14
3133 3231 1.066858 CGAGATACTGGGCGGCATAAT 60.067 52.381 12.47 0.00 0.00 1.28
3179 3451 7.568199 TCATAGATGTCTCGTAGTTGATGAA 57.432 36.000 0.00 0.00 0.00 2.57
3181 3453 7.915923 TCATAGATGTCTCGTAGTTGATGAAAC 59.084 37.037 0.00 0.00 39.24 2.78
3182 3454 6.025749 AGATGTCTCGTAGTTGATGAAACA 57.974 37.500 0.00 0.00 41.61 2.83
3199 3472 4.821805 TGAAACATCTCCTTCAAAGACCAC 59.178 41.667 0.00 0.00 0.00 4.16
3201 3474 2.711009 ACATCTCCTTCAAAGACCACCA 59.289 45.455 0.00 0.00 0.00 4.17
3213 3486 4.670896 AAGACCACCACCAGAAAATTTG 57.329 40.909 0.00 0.00 0.00 2.32
3214 3487 3.909732 AGACCACCACCAGAAAATTTGA 58.090 40.909 0.00 0.00 0.00 2.69
3223 3496 9.054922 CACCACCAGAAAATTTGAAATAAATGT 57.945 29.630 0.00 0.00 0.00 2.71
3237 3510 8.393395 TGAAATAAATGTAGAAAAATGCGAGC 57.607 30.769 0.00 0.00 0.00 5.03
3238 3511 7.487829 TGAAATAAATGTAGAAAAATGCGAGCC 59.512 33.333 0.00 0.00 0.00 4.70
3239 3512 4.782019 AAATGTAGAAAAATGCGAGCCA 57.218 36.364 0.00 0.00 0.00 4.75
3240 3513 4.989279 AATGTAGAAAAATGCGAGCCAT 57.011 36.364 0.00 0.00 35.06 4.40
3241 3514 3.763097 TGTAGAAAAATGCGAGCCATG 57.237 42.857 0.00 0.00 33.49 3.66
3242 3515 3.081061 TGTAGAAAAATGCGAGCCATGT 58.919 40.909 0.00 0.00 33.49 3.21
3243 3516 2.642139 AGAAAAATGCGAGCCATGTG 57.358 45.000 0.00 0.00 33.49 3.21
3244 3517 2.161855 AGAAAAATGCGAGCCATGTGA 58.838 42.857 0.00 0.00 33.49 3.58
3245 3518 2.163010 AGAAAAATGCGAGCCATGTGAG 59.837 45.455 0.00 0.00 33.49 3.51
3246 3519 1.538047 AAAATGCGAGCCATGTGAGT 58.462 45.000 0.00 0.00 33.49 3.41
3247 3520 1.538047 AAATGCGAGCCATGTGAGTT 58.462 45.000 0.00 0.00 33.49 3.01
3248 3521 1.089920 AATGCGAGCCATGTGAGTTC 58.910 50.000 0.00 0.00 33.49 3.01
3249 3522 0.745845 ATGCGAGCCATGTGAGTTCC 60.746 55.000 0.00 0.00 31.48 3.62
3250 3523 2.456119 GCGAGCCATGTGAGTTCCG 61.456 63.158 0.00 0.00 0.00 4.30
3251 3524 2.456119 CGAGCCATGTGAGTTCCGC 61.456 63.158 0.00 0.00 0.00 5.54
3252 3525 1.375908 GAGCCATGTGAGTTCCGCA 60.376 57.895 0.00 0.00 39.93 5.69
3253 3526 0.955428 GAGCCATGTGAGTTCCGCAA 60.955 55.000 0.00 0.00 38.96 4.85
3254 3527 0.537143 AGCCATGTGAGTTCCGCAAA 60.537 50.000 0.00 0.00 38.96 3.68
3255 3528 0.387239 GCCATGTGAGTTCCGCAAAC 60.387 55.000 0.00 0.00 38.96 2.93
3256 3529 0.240945 CCATGTGAGTTCCGCAAACC 59.759 55.000 0.00 0.00 38.76 3.27
3257 3530 0.240945 CATGTGAGTTCCGCAAACCC 59.759 55.000 0.00 0.00 38.76 4.11
3258 3531 0.110486 ATGTGAGTTCCGCAAACCCT 59.890 50.000 0.00 0.00 38.76 4.34
3259 3532 0.106918 TGTGAGTTCCGCAAACCCTT 60.107 50.000 0.00 0.00 38.76 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.216494 TGCTAAACTATGCATGCTATACTTGA 58.784 34.615 20.33 0.00 33.94 3.02
1 2 7.172190 ACTGCTAAACTATGCATGCTATACTTG 59.828 37.037 20.33 6.35 38.59 3.16
2 3 7.220030 ACTGCTAAACTATGCATGCTATACTT 58.780 34.615 20.33 9.39 38.59 2.24
3 4 6.763355 ACTGCTAAACTATGCATGCTATACT 58.237 36.000 20.33 1.71 38.59 2.12
4 5 7.815068 ACTACTGCTAAACTATGCATGCTATAC 59.185 37.037 20.33 3.42 38.59 1.47
5 6 7.896811 ACTACTGCTAAACTATGCATGCTATA 58.103 34.615 20.33 13.37 38.59 1.31
6 7 6.763355 ACTACTGCTAAACTATGCATGCTAT 58.237 36.000 20.33 12.94 38.59 2.97
7 8 6.161855 ACTACTGCTAAACTATGCATGCTA 57.838 37.500 20.33 5.73 38.59 3.49
8 9 5.028549 ACTACTGCTAAACTATGCATGCT 57.971 39.130 20.33 7.07 38.59 3.79
9 10 6.844696 TTACTACTGCTAAACTATGCATGC 57.155 37.500 11.82 11.82 38.59 4.06
34 35 9.447157 TCTGTTTGGAAAAATTGACAAAAGAAT 57.553 25.926 0.00 0.00 34.95 2.40
35 36 8.839310 TCTGTTTGGAAAAATTGACAAAAGAA 57.161 26.923 0.00 0.00 34.95 2.52
41 42 9.585099 GCATATATCTGTTTGGAAAAATTGACA 57.415 29.630 0.00 0.00 0.00 3.58
42 43 9.585099 TGCATATATCTGTTTGGAAAAATTGAC 57.415 29.630 0.00 0.00 0.00 3.18
43 44 9.806203 CTGCATATATCTGTTTGGAAAAATTGA 57.194 29.630 0.00 0.00 0.00 2.57
44 45 8.545420 GCTGCATATATCTGTTTGGAAAAATTG 58.455 33.333 0.00 0.00 0.00 2.32
45 46 8.259411 TGCTGCATATATCTGTTTGGAAAAATT 58.741 29.630 0.00 0.00 0.00 1.82
46 47 7.784037 TGCTGCATATATCTGTTTGGAAAAAT 58.216 30.769 0.00 0.00 0.00 1.82
47 48 7.167924 TGCTGCATATATCTGTTTGGAAAAA 57.832 32.000 0.00 0.00 0.00 1.94
48 49 6.772360 TGCTGCATATATCTGTTTGGAAAA 57.228 33.333 0.00 0.00 0.00 2.29
49 50 6.405731 GGTTGCTGCATATATCTGTTTGGAAA 60.406 38.462 1.84 0.00 0.00 3.13
50 51 5.067674 GGTTGCTGCATATATCTGTTTGGAA 59.932 40.000 1.84 0.00 0.00 3.53
51 52 4.580167 GGTTGCTGCATATATCTGTTTGGA 59.420 41.667 1.84 0.00 0.00 3.53
52 53 4.338964 TGGTTGCTGCATATATCTGTTTGG 59.661 41.667 1.84 0.00 0.00 3.28
53 54 5.503662 TGGTTGCTGCATATATCTGTTTG 57.496 39.130 1.84 0.00 0.00 2.93
54 55 6.528537 TTTGGTTGCTGCATATATCTGTTT 57.471 33.333 1.84 0.00 0.00 2.83
55 56 6.377996 TCTTTTGGTTGCTGCATATATCTGTT 59.622 34.615 1.84 0.00 0.00 3.16
56 57 5.887598 TCTTTTGGTTGCTGCATATATCTGT 59.112 36.000 1.84 0.00 0.00 3.41
57 58 6.381481 TCTTTTGGTTGCTGCATATATCTG 57.619 37.500 1.84 0.00 0.00 2.90
58 59 6.774170 TCATCTTTTGGTTGCTGCATATATCT 59.226 34.615 1.84 0.00 0.00 1.98
59 60 6.973843 TCATCTTTTGGTTGCTGCATATATC 58.026 36.000 1.84 0.00 0.00 1.63
60 61 6.964807 TCATCTTTTGGTTGCTGCATATAT 57.035 33.333 1.84 0.00 0.00 0.86
61 62 6.772360 TTCATCTTTTGGTTGCTGCATATA 57.228 33.333 1.84 0.00 0.00 0.86
62 63 5.664294 TTCATCTTTTGGTTGCTGCATAT 57.336 34.783 1.84 0.00 0.00 1.78
63 64 5.664294 ATTCATCTTTTGGTTGCTGCATA 57.336 34.783 1.84 0.00 0.00 3.14
64 65 4.546829 ATTCATCTTTTGGTTGCTGCAT 57.453 36.364 1.84 0.00 0.00 3.96
65 66 4.339872 AATTCATCTTTTGGTTGCTGCA 57.660 36.364 0.00 0.00 0.00 4.41
66 67 6.128472 CCTTTAATTCATCTTTTGGTTGCTGC 60.128 38.462 0.00 0.00 0.00 5.25
67 68 7.153985 TCCTTTAATTCATCTTTTGGTTGCTG 58.846 34.615 0.00 0.00 0.00 4.41
68 69 7.233348 TCTCCTTTAATTCATCTTTTGGTTGCT 59.767 33.333 0.00 0.00 0.00 3.91
69 70 7.329471 GTCTCCTTTAATTCATCTTTTGGTTGC 59.671 37.037 0.00 0.00 0.00 4.17
70 71 8.359642 TGTCTCCTTTAATTCATCTTTTGGTTG 58.640 33.333 0.00 0.00 0.00 3.77
71 72 8.360390 GTGTCTCCTTTAATTCATCTTTTGGTT 58.640 33.333 0.00 0.00 0.00 3.67
72 73 7.505585 TGTGTCTCCTTTAATTCATCTTTTGGT 59.494 33.333 0.00 0.00 0.00 3.67
73 74 7.885297 TGTGTCTCCTTTAATTCATCTTTTGG 58.115 34.615 0.00 0.00 0.00 3.28
74 75 9.748708 TTTGTGTCTCCTTTAATTCATCTTTTG 57.251 29.630 0.00 0.00 0.00 2.44
75 76 9.750125 GTTTGTGTCTCCTTTAATTCATCTTTT 57.250 29.630 0.00 0.00 0.00 2.27
76 77 8.912988 TGTTTGTGTCTCCTTTAATTCATCTTT 58.087 29.630 0.00 0.00 0.00 2.52
77 78 8.463930 TGTTTGTGTCTCCTTTAATTCATCTT 57.536 30.769 0.00 0.00 0.00 2.40
78 79 8.641498 ATGTTTGTGTCTCCTTTAATTCATCT 57.359 30.769 0.00 0.00 0.00 2.90
79 80 8.514594 TGATGTTTGTGTCTCCTTTAATTCATC 58.485 33.333 0.00 0.00 0.00 2.92
80 81 8.408043 TGATGTTTGTGTCTCCTTTAATTCAT 57.592 30.769 0.00 0.00 0.00 2.57
81 82 7.815840 TGATGTTTGTGTCTCCTTTAATTCA 57.184 32.000 0.00 0.00 0.00 2.57
82 83 8.134895 TGTTGATGTTTGTGTCTCCTTTAATTC 58.865 33.333 0.00 0.00 0.00 2.17
83 84 8.006298 TGTTGATGTTTGTGTCTCCTTTAATT 57.994 30.769 0.00 0.00 0.00 1.40
84 85 7.502226 TCTGTTGATGTTTGTGTCTCCTTTAAT 59.498 33.333 0.00 0.00 0.00 1.40
85 86 6.826231 TCTGTTGATGTTTGTGTCTCCTTTAA 59.174 34.615 0.00 0.00 0.00 1.52
86 87 6.353323 TCTGTTGATGTTTGTGTCTCCTTTA 58.647 36.000 0.00 0.00 0.00 1.85
87 88 5.192927 TCTGTTGATGTTTGTGTCTCCTTT 58.807 37.500 0.00 0.00 0.00 3.11
88 89 4.780815 TCTGTTGATGTTTGTGTCTCCTT 58.219 39.130 0.00 0.00 0.00 3.36
89 90 4.422073 TCTGTTGATGTTTGTGTCTCCT 57.578 40.909 0.00 0.00 0.00 3.69
90 91 4.023707 CCTTCTGTTGATGTTTGTGTCTCC 60.024 45.833 0.00 0.00 0.00 3.71
91 92 4.816385 TCCTTCTGTTGATGTTTGTGTCTC 59.184 41.667 0.00 0.00 0.00 3.36
92 93 4.780815 TCCTTCTGTTGATGTTTGTGTCT 58.219 39.130 0.00 0.00 0.00 3.41
93 94 5.499139 TTCCTTCTGTTGATGTTTGTGTC 57.501 39.130 0.00 0.00 0.00 3.67
94 95 5.913137 TTTCCTTCTGTTGATGTTTGTGT 57.087 34.783 0.00 0.00 0.00 3.72
95 96 7.543172 CCATATTTCCTTCTGTTGATGTTTGTG 59.457 37.037 0.00 0.00 0.00 3.33
96 97 7.309990 CCCATATTTCCTTCTGTTGATGTTTGT 60.310 37.037 0.00 0.00 0.00 2.83
97 98 7.037438 CCCATATTTCCTTCTGTTGATGTTTG 58.963 38.462 0.00 0.00 0.00 2.93
98 99 6.953520 TCCCATATTTCCTTCTGTTGATGTTT 59.046 34.615 0.00 0.00 0.00 2.83
99 100 6.493166 TCCCATATTTCCTTCTGTTGATGTT 58.507 36.000 0.00 0.00 0.00 2.71
100 101 6.078456 TCCCATATTTCCTTCTGTTGATGT 57.922 37.500 0.00 0.00 0.00 3.06
101 102 5.533903 CCTCCCATATTTCCTTCTGTTGATG 59.466 44.000 0.00 0.00 0.00 3.07
102 103 5.433051 TCCTCCCATATTTCCTTCTGTTGAT 59.567 40.000 0.00 0.00 0.00 2.57
103 104 4.788075 TCCTCCCATATTTCCTTCTGTTGA 59.212 41.667 0.00 0.00 0.00 3.18
104 105 5.116084 TCCTCCCATATTTCCTTCTGTTG 57.884 43.478 0.00 0.00 0.00 3.33
105 106 5.760131 CTTCCTCCCATATTTCCTTCTGTT 58.240 41.667 0.00 0.00 0.00 3.16
106 107 4.385754 GCTTCCTCCCATATTTCCTTCTGT 60.386 45.833 0.00 0.00 0.00 3.41
107 108 4.140536 GCTTCCTCCCATATTTCCTTCTG 58.859 47.826 0.00 0.00 0.00 3.02
108 109 4.050757 AGCTTCCTCCCATATTTCCTTCT 58.949 43.478 0.00 0.00 0.00 2.85
109 110 4.445557 AGCTTCCTCCCATATTTCCTTC 57.554 45.455 0.00 0.00 0.00 3.46
110 111 4.888626 AAGCTTCCTCCCATATTTCCTT 57.111 40.909 0.00 0.00 0.00 3.36
111 112 4.888626 AAAGCTTCCTCCCATATTTCCT 57.111 40.909 0.00 0.00 0.00 3.36
112 113 4.956075 TGAAAAGCTTCCTCCCATATTTCC 59.044 41.667 0.00 0.00 0.00 3.13
113 114 5.418840 TGTGAAAAGCTTCCTCCCATATTTC 59.581 40.000 0.00 0.00 0.00 2.17
114 115 5.332743 TGTGAAAAGCTTCCTCCCATATTT 58.667 37.500 0.00 0.00 0.00 1.40
115 116 4.934356 TGTGAAAAGCTTCCTCCCATATT 58.066 39.130 0.00 0.00 0.00 1.28
116 117 4.591321 TGTGAAAAGCTTCCTCCCATAT 57.409 40.909 0.00 0.00 0.00 1.78
117 118 4.380843 TTGTGAAAAGCTTCCTCCCATA 57.619 40.909 0.00 0.00 0.00 2.74
118 119 2.978156 TGTGAAAAGCTTCCTCCCAT 57.022 45.000 0.00 0.00 0.00 4.00
119 120 2.746279 TTGTGAAAAGCTTCCTCCCA 57.254 45.000 0.00 0.00 0.00 4.37
120 121 4.767409 AGTATTTGTGAAAAGCTTCCTCCC 59.233 41.667 0.00 0.00 0.00 4.30
121 122 5.966742 AGTATTTGTGAAAAGCTTCCTCC 57.033 39.130 0.00 0.00 0.00 4.30
122 123 8.045176 ACATAGTATTTGTGAAAAGCTTCCTC 57.955 34.615 0.00 0.00 0.00 3.71
123 124 8.409358 AACATAGTATTTGTGAAAAGCTTCCT 57.591 30.769 0.00 0.00 0.00 3.36
124 125 7.481798 CGAACATAGTATTTGTGAAAAGCTTCC 59.518 37.037 0.00 0.00 0.00 3.46
125 126 8.015658 ACGAACATAGTATTTGTGAAAAGCTTC 58.984 33.333 0.00 0.00 0.00 3.86
126 127 7.871853 ACGAACATAGTATTTGTGAAAAGCTT 58.128 30.769 0.00 0.00 0.00 3.74
127 128 7.435068 ACGAACATAGTATTTGTGAAAAGCT 57.565 32.000 0.00 0.00 0.00 3.74
128 129 9.769093 ATTACGAACATAGTATTTGTGAAAAGC 57.231 29.630 0.00 0.00 0.00 3.51
145 146 9.907576 CAAGCAAAAATTTAAACATTACGAACA 57.092 25.926 0.00 0.00 0.00 3.18
166 167 9.109393 GGTTGTCAGAGTTTTATATATCAAGCA 57.891 33.333 0.00 0.00 32.42 3.91
167 168 9.109393 TGGTTGTCAGAGTTTTATATATCAAGC 57.891 33.333 0.00 0.00 0.00 4.01
169 170 9.391006 GGTGGTTGTCAGAGTTTTATATATCAA 57.609 33.333 0.00 0.00 0.00 2.57
170 171 7.990886 GGGTGGTTGTCAGAGTTTTATATATCA 59.009 37.037 0.00 0.00 0.00 2.15
171 172 8.211629 AGGGTGGTTGTCAGAGTTTTATATATC 58.788 37.037 0.00 0.00 0.00 1.63
172 173 8.102484 AGGGTGGTTGTCAGAGTTTTATATAT 57.898 34.615 0.00 0.00 0.00 0.86
173 174 7.402071 AGAGGGTGGTTGTCAGAGTTTTATATA 59.598 37.037 0.00 0.00 0.00 0.86
174 175 6.215636 AGAGGGTGGTTGTCAGAGTTTTATAT 59.784 38.462 0.00 0.00 0.00 0.86
175 176 5.546499 AGAGGGTGGTTGTCAGAGTTTTATA 59.454 40.000 0.00 0.00 0.00 0.98
176 177 4.351111 AGAGGGTGGTTGTCAGAGTTTTAT 59.649 41.667 0.00 0.00 0.00 1.40
177 178 3.714798 AGAGGGTGGTTGTCAGAGTTTTA 59.285 43.478 0.00 0.00 0.00 1.52
178 179 2.509964 AGAGGGTGGTTGTCAGAGTTTT 59.490 45.455 0.00 0.00 0.00 2.43
179 180 2.104963 GAGAGGGTGGTTGTCAGAGTTT 59.895 50.000 0.00 0.00 0.00 2.66
180 181 1.694696 GAGAGGGTGGTTGTCAGAGTT 59.305 52.381 0.00 0.00 0.00 3.01
181 182 1.343069 GAGAGGGTGGTTGTCAGAGT 58.657 55.000 0.00 0.00 0.00 3.24
182 183 1.342074 TGAGAGGGTGGTTGTCAGAG 58.658 55.000 0.00 0.00 0.00 3.35
183 184 2.030027 ATGAGAGGGTGGTTGTCAGA 57.970 50.000 0.00 0.00 0.00 3.27
184 185 4.494091 AATATGAGAGGGTGGTTGTCAG 57.506 45.455 0.00 0.00 0.00 3.51
185 186 4.927267 AAATATGAGAGGGTGGTTGTCA 57.073 40.909 0.00 0.00 0.00 3.58
186 187 6.238759 GCAATAAATATGAGAGGGTGGTTGTC 60.239 42.308 0.00 0.00 0.00 3.18
187 188 5.594317 GCAATAAATATGAGAGGGTGGTTGT 59.406 40.000 0.00 0.00 0.00 3.32
188 189 5.593909 TGCAATAAATATGAGAGGGTGGTTG 59.406 40.000 0.00 0.00 0.00 3.77
189 190 5.594317 GTGCAATAAATATGAGAGGGTGGTT 59.406 40.000 0.00 0.00 0.00 3.67
190 191 5.103940 AGTGCAATAAATATGAGAGGGTGGT 60.104 40.000 0.00 0.00 0.00 4.16
191 192 5.240183 CAGTGCAATAAATATGAGAGGGTGG 59.760 44.000 0.00 0.00 0.00 4.61
192 193 5.824624 ACAGTGCAATAAATATGAGAGGGTG 59.175 40.000 0.00 0.00 0.00 4.61
193 194 6.006275 ACAGTGCAATAAATATGAGAGGGT 57.994 37.500 0.00 0.00 0.00 4.34
194 195 6.949352 AACAGTGCAATAAATATGAGAGGG 57.051 37.500 0.00 0.00 0.00 4.30
195 196 9.330063 TCTAAACAGTGCAATAAATATGAGAGG 57.670 33.333 0.00 0.00 0.00 3.69
197 198 9.665719 TGTCTAAACAGTGCAATAAATATGAGA 57.334 29.630 0.00 0.00 0.00 3.27
206 207 9.462174 CAAATTTCTTGTCTAAACAGTGCAATA 57.538 29.630 0.00 0.00 36.57 1.90
207 208 7.439056 CCAAATTTCTTGTCTAAACAGTGCAAT 59.561 33.333 0.00 0.00 36.57 3.56
208 209 6.756074 CCAAATTTCTTGTCTAAACAGTGCAA 59.244 34.615 0.00 0.00 36.57 4.08
209 210 6.096141 TCCAAATTTCTTGTCTAAACAGTGCA 59.904 34.615 0.00 0.00 36.57 4.57
210 211 6.503524 TCCAAATTTCTTGTCTAAACAGTGC 58.496 36.000 0.00 0.00 36.57 4.40
211 212 7.930217 TCTCCAAATTTCTTGTCTAAACAGTG 58.070 34.615 0.00 0.00 36.57 3.66
212 213 8.519799 TTCTCCAAATTTCTTGTCTAAACAGT 57.480 30.769 0.00 0.00 36.57 3.55
213 214 9.455847 CTTTCTCCAAATTTCTTGTCTAAACAG 57.544 33.333 0.00 0.00 36.57 3.16
214 215 7.920682 GCTTTCTCCAAATTTCTTGTCTAAACA 59.079 33.333 0.00 0.00 0.00 2.83
215 216 7.113544 CGCTTTCTCCAAATTTCTTGTCTAAAC 59.886 37.037 0.00 0.00 0.00 2.01
216 217 7.012894 TCGCTTTCTCCAAATTTCTTGTCTAAA 59.987 33.333 0.00 0.00 0.00 1.85
217 218 6.485313 TCGCTTTCTCCAAATTTCTTGTCTAA 59.515 34.615 0.00 0.00 0.00 2.10
218 219 5.995282 TCGCTTTCTCCAAATTTCTTGTCTA 59.005 36.000 0.00 0.00 0.00 2.59
219 220 4.821805 TCGCTTTCTCCAAATTTCTTGTCT 59.178 37.500 0.00 0.00 0.00 3.41
220 221 5.108385 TCGCTTTCTCCAAATTTCTTGTC 57.892 39.130 0.00 0.00 0.00 3.18
221 222 5.514274 TTCGCTTTCTCCAAATTTCTTGT 57.486 34.783 0.00 0.00 0.00 3.16
222 223 6.255453 TGTTTTCGCTTTCTCCAAATTTCTTG 59.745 34.615 0.00 0.00 0.00 3.02
223 224 6.337356 TGTTTTCGCTTTCTCCAAATTTCTT 58.663 32.000 0.00 0.00 0.00 2.52
224 225 5.901552 TGTTTTCGCTTTCTCCAAATTTCT 58.098 33.333 0.00 0.00 0.00 2.52
225 226 6.346838 CCATGTTTTCGCTTTCTCCAAATTTC 60.347 38.462 0.00 0.00 0.00 2.17
226 227 5.466393 CCATGTTTTCGCTTTCTCCAAATTT 59.534 36.000 0.00 0.00 0.00 1.82
227 228 4.990426 CCATGTTTTCGCTTTCTCCAAATT 59.010 37.500 0.00 0.00 0.00 1.82
228 229 4.280677 TCCATGTTTTCGCTTTCTCCAAAT 59.719 37.500 0.00 0.00 0.00 2.32
229 230 3.634448 TCCATGTTTTCGCTTTCTCCAAA 59.366 39.130 0.00 0.00 0.00 3.28
230 231 3.218453 TCCATGTTTTCGCTTTCTCCAA 58.782 40.909 0.00 0.00 0.00 3.53
231 232 2.813754 CTCCATGTTTTCGCTTTCTCCA 59.186 45.455 0.00 0.00 0.00 3.86
232 233 3.074412 TCTCCATGTTTTCGCTTTCTCC 58.926 45.455 0.00 0.00 0.00 3.71
233 234 4.749245 TTCTCCATGTTTTCGCTTTCTC 57.251 40.909 0.00 0.00 0.00 2.87
234 235 5.507985 CCTTTTCTCCATGTTTTCGCTTTCT 60.508 40.000 0.00 0.00 0.00 2.52
235 236 4.681483 CCTTTTCTCCATGTTTTCGCTTTC 59.319 41.667 0.00 0.00 0.00 2.62
236 237 4.501400 CCCTTTTCTCCATGTTTTCGCTTT 60.501 41.667 0.00 0.00 0.00 3.51
237 238 3.005791 CCCTTTTCTCCATGTTTTCGCTT 59.994 43.478 0.00 0.00 0.00 4.68
238 239 2.558359 CCCTTTTCTCCATGTTTTCGCT 59.442 45.455 0.00 0.00 0.00 4.93
239 240 2.556622 TCCCTTTTCTCCATGTTTTCGC 59.443 45.455 0.00 0.00 0.00 4.70
240 241 4.458989 TCATCCCTTTTCTCCATGTTTTCG 59.541 41.667 0.00 0.00 0.00 3.46
241 242 5.982890 TCATCCCTTTTCTCCATGTTTTC 57.017 39.130 0.00 0.00 0.00 2.29
242 243 6.270695 ACAATCATCCCTTTTCTCCATGTTTT 59.729 34.615 0.00 0.00 0.00 2.43
243 244 5.781818 ACAATCATCCCTTTTCTCCATGTTT 59.218 36.000 0.00 0.00 0.00 2.83
244 245 5.336102 ACAATCATCCCTTTTCTCCATGTT 58.664 37.500 0.00 0.00 0.00 2.71
245 246 4.939255 ACAATCATCCCTTTTCTCCATGT 58.061 39.130 0.00 0.00 0.00 3.21
246 247 7.408756 TTTACAATCATCCCTTTTCTCCATG 57.591 36.000 0.00 0.00 0.00 3.66
247 248 7.895429 TCTTTTACAATCATCCCTTTTCTCCAT 59.105 33.333 0.00 0.00 0.00 3.41
248 249 7.237982 TCTTTTACAATCATCCCTTTTCTCCA 58.762 34.615 0.00 0.00 0.00 3.86
249 250 7.703058 TCTTTTACAATCATCCCTTTTCTCC 57.297 36.000 0.00 0.00 0.00 3.71
250 251 8.246871 CCTTCTTTTACAATCATCCCTTTTCTC 58.753 37.037 0.00 0.00 0.00 2.87
251 252 7.730332 ACCTTCTTTTACAATCATCCCTTTTCT 59.270 33.333 0.00 0.00 0.00 2.52
252 253 7.896811 ACCTTCTTTTACAATCATCCCTTTTC 58.103 34.615 0.00 0.00 0.00 2.29
253 254 7.855784 ACCTTCTTTTACAATCATCCCTTTT 57.144 32.000 0.00 0.00 0.00 2.27
254 255 7.730332 AGAACCTTCTTTTACAATCATCCCTTT 59.270 33.333 0.00 0.00 32.55 3.11
255 256 7.241628 AGAACCTTCTTTTACAATCATCCCTT 58.758 34.615 0.00 0.00 32.55 3.95
256 257 6.794534 AGAACCTTCTTTTACAATCATCCCT 58.205 36.000 0.00 0.00 32.55 4.20
257 258 7.468141 AAGAACCTTCTTTTACAATCATCCC 57.532 36.000 0.00 0.00 44.70 3.85
298 299 9.158233 GCGCATACCTTTATTTATAGTGGAATA 57.842 33.333 0.30 0.00 0.00 1.75
299 300 7.883311 AGCGCATACCTTTATTTATAGTGGAAT 59.117 33.333 11.47 0.00 0.00 3.01
300 301 7.221450 AGCGCATACCTTTATTTATAGTGGAA 58.779 34.615 11.47 0.00 0.00 3.53
301 302 6.765403 AGCGCATACCTTTATTTATAGTGGA 58.235 36.000 11.47 0.00 0.00 4.02
302 303 7.435068 AAGCGCATACCTTTATTTATAGTGG 57.565 36.000 11.47 0.00 0.00 4.00
307 308 9.502091 TCAGATTAAGCGCATACCTTTATTTAT 57.498 29.630 11.47 0.00 0.00 1.40
308 309 8.896320 TCAGATTAAGCGCATACCTTTATTTA 57.104 30.769 11.47 0.00 0.00 1.40
309 310 7.801716 TCAGATTAAGCGCATACCTTTATTT 57.198 32.000 11.47 0.00 0.00 1.40
310 311 7.801716 TTCAGATTAAGCGCATACCTTTATT 57.198 32.000 11.47 0.00 0.00 1.40
311 312 7.661437 TCATTCAGATTAAGCGCATACCTTTAT 59.339 33.333 11.47 0.00 0.00 1.40
312 313 6.989759 TCATTCAGATTAAGCGCATACCTTTA 59.010 34.615 11.47 0.00 0.00 1.85
313 314 5.822519 TCATTCAGATTAAGCGCATACCTTT 59.177 36.000 11.47 0.00 0.00 3.11
314 315 5.368145 TCATTCAGATTAAGCGCATACCTT 58.632 37.500 11.47 0.00 0.00 3.50
315 316 4.960938 TCATTCAGATTAAGCGCATACCT 58.039 39.130 11.47 0.00 0.00 3.08
316 317 5.869753 ATCATTCAGATTAAGCGCATACC 57.130 39.130 11.47 0.00 31.20 2.73
317 318 8.446273 ACATTATCATTCAGATTAAGCGCATAC 58.554 33.333 11.47 0.00 38.19 2.39
318 319 8.552083 ACATTATCATTCAGATTAAGCGCATA 57.448 30.769 11.47 0.00 38.19 3.14
319 320 7.444629 ACATTATCATTCAGATTAAGCGCAT 57.555 32.000 11.47 0.00 38.19 4.73
320 321 6.866010 ACATTATCATTCAGATTAAGCGCA 57.134 33.333 11.47 0.00 38.19 6.09
321 322 7.579726 AGAACATTATCATTCAGATTAAGCGC 58.420 34.615 0.00 0.00 38.19 5.92
322 323 9.941664 AAAGAACATTATCATTCAGATTAAGCG 57.058 29.630 0.00 0.00 38.19 4.68
404 405 1.604185 CGGCGGGAAATTGAGCAAAAA 60.604 47.619 0.00 0.00 0.00 1.94
405 406 0.038709 CGGCGGGAAATTGAGCAAAA 60.039 50.000 0.00 0.00 0.00 2.44
406 407 1.583986 CGGCGGGAAATTGAGCAAA 59.416 52.632 0.00 0.00 0.00 3.68
407 408 2.988688 GCGGCGGGAAATTGAGCAA 61.989 57.895 9.78 0.00 0.00 3.91
408 409 3.439540 GCGGCGGGAAATTGAGCA 61.440 61.111 9.78 0.00 0.00 4.26
409 410 2.988688 TTGCGGCGGGAAATTGAGC 61.989 57.895 9.78 0.00 0.00 4.26
410 411 1.154035 GTTGCGGCGGGAAATTGAG 60.154 57.895 9.78 0.00 0.00 3.02
411 412 2.958576 GTTGCGGCGGGAAATTGA 59.041 55.556 9.78 0.00 0.00 2.57
412 413 2.503809 CGTTGCGGCGGGAAATTG 60.504 61.111 9.78 0.00 0.00 2.32
413 414 4.413800 GCGTTGCGGCGGGAAATT 62.414 61.111 9.78 0.00 0.00 1.82
424 425 3.778360 TAGATACCCCGCGCGTTGC 62.778 63.158 29.95 11.36 41.47 4.17
425 426 1.947642 GTAGATACCCCGCGCGTTG 60.948 63.158 29.95 21.02 0.00 4.10
426 427 0.819259 TAGTAGATACCCCGCGCGTT 60.819 55.000 29.95 14.98 0.00 4.84
427 428 1.227943 TAGTAGATACCCCGCGCGT 60.228 57.895 29.95 13.36 0.00 6.01
428 429 1.233285 ACTAGTAGATACCCCGCGCG 61.233 60.000 25.67 25.67 0.00 6.86
429 430 0.957362 AACTAGTAGATACCCCGCGC 59.043 55.000 0.00 0.00 0.00 6.86
430 431 3.817647 AGTAAACTAGTAGATACCCCGCG 59.182 47.826 3.59 0.00 0.00 6.46
431 432 8.744568 ATATAGTAAACTAGTAGATACCCCGC 57.255 38.462 3.59 0.00 0.00 6.13
450 451 9.383519 CCTTGTATGTGTCTGACAAAATATAGT 57.616 33.333 12.81 0.00 38.36 2.12
451 452 8.338259 GCCTTGTATGTGTCTGACAAAATATAG 58.662 37.037 12.81 13.11 38.36 1.31
452 453 8.046708 AGCCTTGTATGTGTCTGACAAAATATA 58.953 33.333 12.81 9.12 38.36 0.86
453 454 6.886459 AGCCTTGTATGTGTCTGACAAAATAT 59.114 34.615 12.81 7.54 38.36 1.28
454 455 6.237901 AGCCTTGTATGTGTCTGACAAAATA 58.762 36.000 12.81 10.65 38.36 1.40
455 456 5.072741 AGCCTTGTATGTGTCTGACAAAAT 58.927 37.500 12.81 11.62 38.36 1.82
456 457 4.460263 AGCCTTGTATGTGTCTGACAAAA 58.540 39.130 12.81 4.46 38.36 2.44
457 458 4.085357 AGCCTTGTATGTGTCTGACAAA 57.915 40.909 12.81 7.74 38.36 2.83
458 459 3.769739 AGCCTTGTATGTGTCTGACAA 57.230 42.857 12.81 3.73 38.36 3.18
459 460 3.769739 AAGCCTTGTATGTGTCTGACA 57.230 42.857 6.36 6.36 39.53 3.58
460 461 4.566004 TGTAAGCCTTGTATGTGTCTGAC 58.434 43.478 0.00 0.00 0.00 3.51
461 462 4.283467 ACTGTAAGCCTTGTATGTGTCTGA 59.717 41.667 0.00 0.00 37.60 3.27
462 463 4.389992 CACTGTAAGCCTTGTATGTGTCTG 59.610 45.833 0.00 0.00 37.60 3.51
463 464 4.040461 ACACTGTAAGCCTTGTATGTGTCT 59.960 41.667 0.00 0.00 37.60 3.41
464 465 4.315803 ACACTGTAAGCCTTGTATGTGTC 58.684 43.478 0.00 0.00 37.60 3.67
465 466 4.315803 GACACTGTAAGCCTTGTATGTGT 58.684 43.478 0.00 0.00 39.64 3.72
466 467 3.367932 CGACACTGTAAGCCTTGTATGTG 59.632 47.826 0.00 0.00 37.60 3.21
467 468 3.006537 ACGACACTGTAAGCCTTGTATGT 59.993 43.478 0.00 0.00 37.60 2.29
468 469 3.367932 CACGACACTGTAAGCCTTGTATG 59.632 47.826 0.00 0.00 37.60 2.39
469 470 3.257375 TCACGACACTGTAAGCCTTGTAT 59.743 43.478 0.00 0.00 37.60 2.29
470 471 2.624364 TCACGACACTGTAAGCCTTGTA 59.376 45.455 0.00 0.00 37.60 2.41
471 472 1.411246 TCACGACACTGTAAGCCTTGT 59.589 47.619 0.00 0.00 37.60 3.16
472 473 2.148916 TCACGACACTGTAAGCCTTG 57.851 50.000 0.00 0.00 37.60 3.61
473 474 4.530710 TTATCACGACACTGTAAGCCTT 57.469 40.909 0.00 0.00 37.60 4.35
474 475 4.530710 TTTATCACGACACTGTAAGCCT 57.469 40.909 0.00 0.00 37.60 4.58
475 476 7.478520 AATATTTATCACGACACTGTAAGCC 57.521 36.000 0.00 0.00 37.60 4.35
476 477 8.600625 TGAAATATTTATCACGACACTGTAAGC 58.399 33.333 0.00 0.00 37.60 3.09
479 480 9.647797 AGTTGAAATATTTATCACGACACTGTA 57.352 29.630 0.00 0.00 0.00 2.74
480 481 8.547967 AGTTGAAATATTTATCACGACACTGT 57.452 30.769 0.00 0.00 0.00 3.55
481 482 9.825972 AAAGTTGAAATATTTATCACGACACTG 57.174 29.630 0.00 0.00 0.00 3.66
482 483 9.825972 CAAAGTTGAAATATTTATCACGACACT 57.174 29.630 0.00 0.00 0.00 3.55
483 484 9.607285 ACAAAGTTGAAATATTTATCACGACAC 57.393 29.630 0.00 0.00 0.00 3.67
484 485 9.605955 CACAAAGTTGAAATATTTATCACGACA 57.394 29.630 0.00 0.00 0.00 4.35
485 486 9.607285 ACACAAAGTTGAAATATTTATCACGAC 57.393 29.630 0.00 0.00 0.00 4.34
502 503 8.677300 CATTATAGACATAGCCAACACAAAGTT 58.323 33.333 0.00 0.00 42.42 2.66
503 504 7.201732 GCATTATAGACATAGCCAACACAAAGT 60.202 37.037 0.00 0.00 0.00 2.66
504 505 7.134815 GCATTATAGACATAGCCAACACAAAG 58.865 38.462 0.00 0.00 0.00 2.77
505 506 6.238347 CGCATTATAGACATAGCCAACACAAA 60.238 38.462 0.00 0.00 0.00 2.83
506 507 5.236263 CGCATTATAGACATAGCCAACACAA 59.764 40.000 0.00 0.00 0.00 3.33
507 508 4.749598 CGCATTATAGACATAGCCAACACA 59.250 41.667 0.00 0.00 0.00 3.72
510 511 5.465390 TGAACGCATTATAGACATAGCCAAC 59.535 40.000 0.00 0.00 0.00 3.77
513 514 6.727824 AATGAACGCATTATAGACATAGCC 57.272 37.500 0.00 0.00 42.73 3.93
528 529 7.746475 GGCTGATTATGTCTAATTAATGAACGC 59.254 37.037 0.00 0.00 0.00 4.84
529 530 8.773645 TGGCTGATTATGTCTAATTAATGAACG 58.226 33.333 0.00 0.00 0.00 3.95
541 542 3.384168 TGGTAGGTGGCTGATTATGTCT 58.616 45.455 0.00 0.00 0.00 3.41
583 584 3.576550 ACTTTTGTTGCCCCATAATTCGT 59.423 39.130 0.00 0.00 0.00 3.85
629 631 3.903714 CCTTTCCTTTTCCACATTTCCCT 59.096 43.478 0.00 0.00 0.00 4.20
656 658 6.022315 CCTAGAGAAGATATTGGGGACTGAT 58.978 44.000 0.00 0.00 0.00 2.90
657 659 5.398236 CCTAGAGAAGATATTGGGGACTGA 58.602 45.833 0.00 0.00 0.00 3.41
736 738 1.306970 GAAGGGGAGAGAGACGGGA 59.693 63.158 0.00 0.00 0.00 5.14
737 739 1.758906 GGAAGGGGAGAGAGACGGG 60.759 68.421 0.00 0.00 0.00 5.28
740 742 0.041982 ACAGGGAAGGGGAGAGAGAC 59.958 60.000 0.00 0.00 0.00 3.36
741 743 0.793617 AACAGGGAAGGGGAGAGAGA 59.206 55.000 0.00 0.00 0.00 3.10
742 744 1.280421 CAAACAGGGAAGGGGAGAGAG 59.720 57.143 0.00 0.00 0.00 3.20
743 745 1.362224 CAAACAGGGAAGGGGAGAGA 58.638 55.000 0.00 0.00 0.00 3.10
776 790 1.539665 GACGGAGGAGGGGAGAGAT 59.460 63.158 0.00 0.00 0.00 2.75
1701 1747 4.963878 CTCATGAAGGAACCGGGG 57.036 61.111 6.32 0.00 0.00 5.73
1755 1801 0.179111 CGTTAGGATCTTGCCGCTCA 60.179 55.000 0.00 0.00 0.00 4.26
2088 2134 1.183549 GCTCTTCTTCCGTACCTCCA 58.816 55.000 0.00 0.00 0.00 3.86
2148 2200 2.404995 GCGCTGCTGCTCCATTTCT 61.405 57.895 14.03 0.00 36.97 2.52
2181 2233 2.358247 TCTTCGCCTTCGTTGCCC 60.358 61.111 0.00 0.00 36.96 5.36
2239 2291 0.663269 TACTGTGAGCTGTTGTCGCG 60.663 55.000 0.00 0.00 0.00 5.87
2242 2294 2.483876 TGCTTACTGTGAGCTGTTGTC 58.516 47.619 22.68 0.00 40.75 3.18
2449 2514 2.094130 ACGAGGCCTAAGAACTAGCAAC 60.094 50.000 4.42 0.00 0.00 4.17
2458 2523 4.698304 CACCAAAAATAACGAGGCCTAAGA 59.302 41.667 4.42 0.00 0.00 2.10
2577 2642 0.613853 CCTGAGTCGGGACCCACTAA 60.614 60.000 13.26 5.72 29.82 2.24
2663 2728 7.926018 ACAATGGTGAAAGATAAAACAAGAACC 59.074 33.333 0.00 0.00 0.00 3.62
2664 2729 8.871686 ACAATGGTGAAAGATAAAACAAGAAC 57.128 30.769 0.00 0.00 0.00 3.01
2761 2826 0.251916 CATTGCCCCTCGTACAAGGA 59.748 55.000 0.00 0.00 38.87 3.36
2762 2827 0.251916 TCATTGCCCCTCGTACAAGG 59.748 55.000 0.00 0.00 36.08 3.61
2763 2828 2.213499 GATCATTGCCCCTCGTACAAG 58.787 52.381 0.00 0.00 0.00 3.16
2794 2863 2.505557 GACTTGGCAAGCGCATGC 60.506 61.111 28.26 28.26 45.67 4.06
2876 2945 9.268268 GGCTACATATGCTGTTAACATTTACTA 57.732 33.333 9.13 0.00 39.39 1.82
2881 2950 7.000472 AGATGGCTACATATGCTGTTAACATT 59.000 34.615 9.13 0.08 39.39 2.71
2882 2951 6.429078 CAGATGGCTACATATGCTGTTAACAT 59.571 38.462 9.13 0.00 39.21 2.71
2883 2952 5.759763 CAGATGGCTACATATGCTGTTAACA 59.240 40.000 8.28 8.28 39.21 2.41
2884 2953 6.233430 CAGATGGCTACATATGCTGTTAAC 57.767 41.667 1.58 0.00 39.21 2.01
2945 3034 9.551734 TGTGATATAATCCACTTCTGAATTCTG 57.448 33.333 7.05 6.50 34.57 3.02
3055 3145 8.379428 AGGGTGATTGTATATGTATATGAGCA 57.621 34.615 0.00 0.00 0.00 4.26
3073 3163 6.215636 GGAGGGTGTATATTCATAAGGGTGAT 59.784 42.308 0.00 0.00 0.00 3.06
3077 3167 6.026186 AGAGGAGGGTGTATATTCATAAGGG 58.974 44.000 0.00 0.00 0.00 3.95
3080 3170 9.480861 CTCATAGAGGAGGGTGTATATTCATAA 57.519 37.037 0.00 0.00 0.00 1.90
3114 3212 2.770164 ATTATGCCGCCCAGTATCTC 57.230 50.000 0.00 0.00 0.00 2.75
3125 3223 9.338291 CTTCATCAATCTCAAAATATTATGCCG 57.662 33.333 0.00 0.00 0.00 5.69
3162 3434 6.025749 AGATGTTTCATCAACTACGAGACA 57.974 37.500 11.47 0.00 36.21 3.41
3163 3435 5.517054 GGAGATGTTTCATCAACTACGAGAC 59.483 44.000 11.47 0.00 36.21 3.36
3164 3436 5.419155 AGGAGATGTTTCATCAACTACGAGA 59.581 40.000 11.47 0.00 36.21 4.04
3165 3437 5.655488 AGGAGATGTTTCATCAACTACGAG 58.345 41.667 11.47 0.00 36.21 4.18
3179 3451 3.138283 TGGTGGTCTTTGAAGGAGATGTT 59.862 43.478 0.00 0.00 0.00 2.71
3181 3453 3.077359 GTGGTGGTCTTTGAAGGAGATG 58.923 50.000 0.00 0.00 0.00 2.90
3182 3454 2.040412 GGTGGTGGTCTTTGAAGGAGAT 59.960 50.000 0.00 0.00 0.00 2.75
3213 3486 7.487829 TGGCTCGCATTTTTCTACATTTATTTC 59.512 33.333 0.00 0.00 0.00 2.17
3214 3487 7.319646 TGGCTCGCATTTTTCTACATTTATTT 58.680 30.769 0.00 0.00 0.00 1.40
3223 3496 3.342719 TCACATGGCTCGCATTTTTCTA 58.657 40.909 0.00 0.00 0.00 2.10
3224 3497 2.161855 TCACATGGCTCGCATTTTTCT 58.838 42.857 0.00 0.00 0.00 2.52
3225 3498 2.095059 ACTCACATGGCTCGCATTTTTC 60.095 45.455 0.00 0.00 0.00 2.29
3226 3499 1.888512 ACTCACATGGCTCGCATTTTT 59.111 42.857 0.00 0.00 0.00 1.94
3227 3500 1.538047 ACTCACATGGCTCGCATTTT 58.462 45.000 0.00 0.00 0.00 1.82
3228 3501 1.470098 GAACTCACATGGCTCGCATTT 59.530 47.619 0.00 0.00 0.00 2.32
3229 3502 1.089920 GAACTCACATGGCTCGCATT 58.910 50.000 0.00 0.00 0.00 3.56
3230 3503 0.745845 GGAACTCACATGGCTCGCAT 60.746 55.000 0.00 0.00 0.00 4.73
3231 3504 1.375908 GGAACTCACATGGCTCGCA 60.376 57.895 0.00 0.00 0.00 5.10
3232 3505 2.456119 CGGAACTCACATGGCTCGC 61.456 63.158 0.00 0.00 0.00 5.03
3233 3506 2.456119 GCGGAACTCACATGGCTCG 61.456 63.158 0.00 0.00 0.00 5.03
3234 3507 0.955428 TTGCGGAACTCACATGGCTC 60.955 55.000 0.00 0.00 0.00 4.70
3235 3508 0.537143 TTTGCGGAACTCACATGGCT 60.537 50.000 0.00 0.00 0.00 4.75
3236 3509 0.387239 GTTTGCGGAACTCACATGGC 60.387 55.000 0.00 0.00 35.31 4.40
3237 3510 0.240945 GGTTTGCGGAACTCACATGG 59.759 55.000 0.00 0.00 38.35 3.66
3238 3511 0.240945 GGGTTTGCGGAACTCACATG 59.759 55.000 0.00 0.00 38.67 3.21
3239 3512 0.110486 AGGGTTTGCGGAACTCACAT 59.890 50.000 5.57 0.00 41.44 3.21
3240 3513 0.106918 AAGGGTTTGCGGAACTCACA 60.107 50.000 5.57 0.00 41.44 3.58
3241 3514 2.715536 AAGGGTTTGCGGAACTCAC 58.284 52.632 5.57 0.00 41.44 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.