Multiple sequence alignment - TraesCS5A01G121300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G121300 chr5A 100.000 2339 0 0 1 2339 262232341 262230003 0.000000e+00 4320.0
1 TraesCS5A01G121300 chr3D 94.776 670 34 1 693 1361 499598362 499599031 0.000000e+00 1042.0
2 TraesCS5A01G121300 chr3D 91.297 632 46 4 1365 1988 597211843 597212473 0.000000e+00 854.0
3 TraesCS5A01G121300 chr3D 91.534 189 8 6 14 201 597211484 597211665 1.070000e-63 254.0
4 TraesCS5A01G121300 chr3D 92.086 139 10 1 552 690 597211717 597211854 6.600000e-46 195.0
5 TraesCS5A01G121300 chr5D 93.620 674 40 2 693 1365 117351825 117352496 0.000000e+00 1003.0
6 TraesCS5A01G121300 chr5D 92.722 371 12 3 1979 2339 155854486 155854851 2.660000e-144 521.0
7 TraesCS5A01G121300 chr4D 93.314 673 42 3 693 1365 25179984 25180653 0.000000e+00 990.0
8 TraesCS5A01G121300 chr4D 90.476 42 2 2 1940 1980 194992383 194992343 1.000000e-03 54.7
9 TraesCS5A01G121300 chr6D 93.294 671 44 1 693 1363 158871768 158871099 0.000000e+00 989.0
10 TraesCS5A01G121300 chr6D 86.181 673 87 5 693 1363 32688309 32687641 0.000000e+00 723.0
11 TraesCS5A01G121300 chr4B 92.422 673 47 2 693 1364 660587791 660587122 0.000000e+00 957.0
12 TraesCS5A01G121300 chr2B 91.864 676 54 1 693 1367 361568108 361568783 0.000000e+00 942.0
13 TraesCS5A01G121300 chr2B 87.229 415 39 8 1567 1979 745441354 745441756 5.890000e-126 460.0
14 TraesCS5A01G121300 chr2B 88.780 205 23 0 484 688 745440768 745440972 3.860000e-63 252.0
15 TraesCS5A01G121300 chr2B 88.542 192 10 3 1979 2159 375094688 375094878 3.030000e-54 222.0
16 TraesCS5A01G121300 chr2B 82.673 202 23 3 1376 1565 745440989 745441190 4.000000e-38 169.0
17 TraesCS5A01G121300 chr2B 95.122 41 2 0 1939 1979 747441802 747441842 5.400000e-07 65.8
18 TraesCS5A01G121300 chr3B 91.976 673 45 6 693 1363 660332891 660333556 0.000000e+00 935.0
19 TraesCS5A01G121300 chr1D 87.202 672 85 1 692 1363 216023229 216022559 0.000000e+00 763.0
20 TraesCS5A01G121300 chr3A 90.693 462 35 3 1365 1818 727299984 727300445 1.990000e-170 608.0
21 TraesCS5A01G121300 chr3A 92.308 221 13 4 1979 2196 645803517 645803298 6.280000e-81 311.0
22 TraesCS5A01G121300 chr3A 91.710 193 14 2 1979 2170 662205732 662205923 1.380000e-67 267.0
23 TraesCS5A01G121300 chr3A 93.548 124 7 1 1865 1988 727300743 727300865 1.430000e-42 183.0
24 TraesCS5A01G121300 chr3A 95.536 112 4 1 16 126 727299492 727299603 6.640000e-41 178.0
25 TraesCS5A01G121300 chr3A 89.286 140 15 0 552 691 727299857 727299996 2.390000e-40 176.0
26 TraesCS5A01G121300 chr5B 91.914 371 17 4 1979 2339 181555050 181555417 7.460000e-140 507.0
27 TraesCS5A01G121300 chr5B 95.000 40 2 0 1940 1979 612310006 612309967 1.940000e-06 63.9
28 TraesCS5A01G121300 chr5B 85.185 54 7 1 1936 1988 588792079 588792132 1.000000e-03 54.7
29 TraesCS5A01G121300 chr7A 91.071 224 14 4 1978 2196 666216221 666216443 4.890000e-77 298.0
30 TraesCS5A01G121300 chr7A 90.000 50 5 0 1930 1979 595945331 595945282 5.400000e-07 65.8
31 TraesCS5A01G121300 chr7A 84.848 66 7 3 1940 2003 380284769 380284833 1.940000e-06 63.9
32 TraesCS5A01G121300 chr1A 91.011 178 14 2 2159 2335 377564697 377564521 3.000000e-59 239.0
33 TraesCS5A01G121300 chr2A 90.909 176 14 2 2161 2335 720616096 720615922 3.890000e-58 235.0
34 TraesCS5A01G121300 chr2A 89.888 178 16 2 2159 2335 650060320 650060144 6.500000e-56 228.0
35 TraesCS5A01G121300 chr6A 92.683 41 3 0 1939 1979 274516047 274516007 2.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G121300 chr5A 262230003 262232341 2338 True 4320.000000 4320 100.000000 1 2339 1 chr5A.!!$R1 2338
1 TraesCS5A01G121300 chr3D 499598362 499599031 669 False 1042.000000 1042 94.776000 693 1361 1 chr3D.!!$F1 668
2 TraesCS5A01G121300 chr3D 597211484 597212473 989 False 434.333333 854 91.639000 14 1988 3 chr3D.!!$F2 1974
3 TraesCS5A01G121300 chr5D 117351825 117352496 671 False 1003.000000 1003 93.620000 693 1365 1 chr5D.!!$F1 672
4 TraesCS5A01G121300 chr4D 25179984 25180653 669 False 990.000000 990 93.314000 693 1365 1 chr4D.!!$F1 672
5 TraesCS5A01G121300 chr6D 158871099 158871768 669 True 989.000000 989 93.294000 693 1363 1 chr6D.!!$R2 670
6 TraesCS5A01G121300 chr6D 32687641 32688309 668 True 723.000000 723 86.181000 693 1363 1 chr6D.!!$R1 670
7 TraesCS5A01G121300 chr4B 660587122 660587791 669 True 957.000000 957 92.422000 693 1364 1 chr4B.!!$R1 671
8 TraesCS5A01G121300 chr2B 361568108 361568783 675 False 942.000000 942 91.864000 693 1367 1 chr2B.!!$F1 674
9 TraesCS5A01G121300 chr2B 745440768 745441756 988 False 293.666667 460 86.227333 484 1979 3 chr2B.!!$F4 1495
10 TraesCS5A01G121300 chr3B 660332891 660333556 665 False 935.000000 935 91.976000 693 1363 1 chr3B.!!$F1 670
11 TraesCS5A01G121300 chr1D 216022559 216023229 670 True 763.000000 763 87.202000 692 1363 1 chr1D.!!$R1 671
12 TraesCS5A01G121300 chr3A 727299492 727300865 1373 False 286.250000 608 92.265750 16 1988 4 chr3A.!!$F2 1972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 431 0.032952 AACGCTGCTACTGTCGGAAA 59.967 50.0 0.0 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1949 0.322816 GCAAGTCAAGGCCCTCATGA 60.323 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 6.216569 CGATCTCGGGAATCAATAAAGAAGA 58.783 40.000 0.00 0.00 35.37 2.87
108 110 7.516198 AGAAAATAAGCTGCCCAGTAATATG 57.484 36.000 0.00 0.00 0.00 1.78
136 167 8.875168 AGAAGGAAAGAGAGAAACATAAGAAGA 58.125 33.333 0.00 0.00 0.00 2.87
179 233 6.704056 ATAAGGAAGGAAAGAAAGGAGACA 57.296 37.500 0.00 0.00 0.00 3.41
216 270 8.875168 AGAAGGAAAGAGAGAAACATAAGAAGA 58.125 33.333 0.00 0.00 0.00 2.87
223 277 9.447157 AAGAGAGAAACATAAGAAGAAATGAGG 57.553 33.333 0.00 0.00 0.00 3.86
254 308 7.275779 TCGAAAGAATAAGGAACGAAAGAGATG 59.724 37.037 0.00 0.00 37.03 2.90
282 337 5.459536 AAAGAAGAAAAGGAAGGACATGC 57.540 39.130 0.00 0.00 0.00 4.06
283 338 4.104383 AGAAGAAAAGGAAGGACATGCA 57.896 40.909 0.00 0.00 0.00 3.96
284 339 4.473444 AGAAGAAAAGGAAGGACATGCAA 58.527 39.130 0.00 0.00 0.00 4.08
285 340 5.082425 AGAAGAAAAGGAAGGACATGCAAT 58.918 37.500 0.00 0.00 0.00 3.56
286 341 6.248433 AGAAGAAAAGGAAGGACATGCAATA 58.752 36.000 0.00 0.00 0.00 1.90
287 342 6.721208 AGAAGAAAAGGAAGGACATGCAATAA 59.279 34.615 0.00 0.00 0.00 1.40
288 343 7.398332 AGAAGAAAAGGAAGGACATGCAATAAT 59.602 33.333 0.00 0.00 0.00 1.28
289 344 7.105241 AGAAAAGGAAGGACATGCAATAATC 57.895 36.000 0.00 0.00 0.00 1.75
290 345 6.894103 AGAAAAGGAAGGACATGCAATAATCT 59.106 34.615 0.00 0.00 0.00 2.40
291 346 7.398332 AGAAAAGGAAGGACATGCAATAATCTT 59.602 33.333 0.00 0.00 0.00 2.40
292 347 7.486407 AAAGGAAGGACATGCAATAATCTTT 57.514 32.000 0.00 0.00 0.00 2.52
293 348 6.461110 AGGAAGGACATGCAATAATCTTTG 57.539 37.500 0.00 0.00 0.00 2.77
294 349 5.361857 AGGAAGGACATGCAATAATCTTTGG 59.638 40.000 0.00 0.00 0.00 3.28
295 350 5.360714 GGAAGGACATGCAATAATCTTTGGA 59.639 40.000 0.00 0.00 0.00 3.53
296 351 6.460676 GGAAGGACATGCAATAATCTTTGGAG 60.461 42.308 0.00 0.00 30.13 3.86
297 352 5.759059 AGGACATGCAATAATCTTTGGAGA 58.241 37.500 0.00 0.00 36.09 3.71
298 353 5.826737 AGGACATGCAATAATCTTTGGAGAG 59.173 40.000 0.00 0.00 34.85 3.20
299 354 5.824624 GGACATGCAATAATCTTTGGAGAGA 59.175 40.000 0.00 0.00 34.85 3.10
300 355 6.238593 GGACATGCAATAATCTTTGGAGAGAC 60.239 42.308 0.00 0.00 34.85 3.36
301 356 5.591877 ACATGCAATAATCTTTGGAGAGACC 59.408 40.000 0.00 0.00 34.85 3.85
302 357 4.526970 TGCAATAATCTTTGGAGAGACCC 58.473 43.478 0.00 0.00 38.00 4.46
303 358 4.018506 TGCAATAATCTTTGGAGAGACCCA 60.019 41.667 0.00 0.00 38.00 4.51
304 359 4.949856 GCAATAATCTTTGGAGAGACCCAA 59.050 41.667 0.00 0.00 43.90 4.12
312 367 3.887621 TGGAGAGACCCAAATAAGACG 57.112 47.619 0.00 0.00 38.00 4.18
313 368 2.093658 TGGAGAGACCCAAATAAGACGC 60.094 50.000 0.00 0.00 38.00 5.19
314 369 2.552031 GAGAGACCCAAATAAGACGCC 58.448 52.381 0.00 0.00 0.00 5.68
315 370 1.209747 AGAGACCCAAATAAGACGCCC 59.790 52.381 0.00 0.00 0.00 6.13
316 371 0.988832 AGACCCAAATAAGACGCCCA 59.011 50.000 0.00 0.00 0.00 5.36
317 372 1.092348 GACCCAAATAAGACGCCCAC 58.908 55.000 0.00 0.00 0.00 4.61
327 382 8.842280 CCAAATAAGACGCCCACTAATATAAAA 58.158 33.333 0.00 0.00 0.00 1.52
352 407 8.547481 AAAGGAAACATAGAAAAAGGGAAAGA 57.453 30.769 0.00 0.00 0.00 2.52
353 408 7.767250 AGGAAACATAGAAAAAGGGAAAGAG 57.233 36.000 0.00 0.00 0.00 2.85
356 411 8.462811 GGAAACATAGAAAAAGGGAAAGAGATC 58.537 37.037 0.00 0.00 0.00 2.75
358 413 8.940397 AACATAGAAAAAGGGAAAGAGATCAA 57.060 30.769 0.00 0.00 0.00 2.57
359 414 8.341892 ACATAGAAAAAGGGAAAGAGATCAAC 57.658 34.615 0.00 0.00 0.00 3.18
360 415 5.948992 AGAAAAAGGGAAAGAGATCAACG 57.051 39.130 0.00 0.00 0.00 4.10
361 416 4.216472 AGAAAAAGGGAAAGAGATCAACGC 59.784 41.667 0.00 0.00 0.00 4.84
362 417 3.425162 AAAGGGAAAGAGATCAACGCT 57.575 42.857 0.00 0.00 0.00 5.07
363 418 2.393271 AGGGAAAGAGATCAACGCTG 57.607 50.000 0.00 0.00 0.00 5.18
364 419 0.729690 GGGAAAGAGATCAACGCTGC 59.270 55.000 0.00 0.00 0.00 5.25
365 420 1.677217 GGGAAAGAGATCAACGCTGCT 60.677 52.381 0.00 0.00 0.00 4.24
366 421 2.418746 GGGAAAGAGATCAACGCTGCTA 60.419 50.000 0.00 0.00 0.00 3.49
367 422 2.605366 GGAAAGAGATCAACGCTGCTAC 59.395 50.000 0.00 0.00 0.00 3.58
368 423 3.516615 GAAAGAGATCAACGCTGCTACT 58.483 45.455 0.00 0.00 0.00 2.57
369 424 2.575694 AGAGATCAACGCTGCTACTG 57.424 50.000 0.00 0.00 0.00 2.74
370 425 1.821753 AGAGATCAACGCTGCTACTGT 59.178 47.619 0.00 0.00 0.00 3.55
371 426 2.159310 AGAGATCAACGCTGCTACTGTC 60.159 50.000 0.00 0.00 0.00 3.51
372 427 0.917259 GATCAACGCTGCTACTGTCG 59.083 55.000 0.00 0.00 0.00 4.35
373 428 0.458543 ATCAACGCTGCTACTGTCGG 60.459 55.000 0.00 0.00 0.00 4.79
374 429 1.080772 CAACGCTGCTACTGTCGGA 60.081 57.895 0.00 0.00 0.00 4.55
375 430 0.666274 CAACGCTGCTACTGTCGGAA 60.666 55.000 0.00 0.00 0.00 4.30
376 431 0.032952 AACGCTGCTACTGTCGGAAA 59.967 50.000 0.00 0.00 0.00 3.13
377 432 0.246635 ACGCTGCTACTGTCGGAAAT 59.753 50.000 0.00 0.00 0.00 2.17
378 433 1.337823 ACGCTGCTACTGTCGGAAATT 60.338 47.619 0.00 0.00 0.00 1.82
379 434 2.094390 ACGCTGCTACTGTCGGAAATTA 60.094 45.455 0.00 0.00 0.00 1.40
380 435 2.535984 CGCTGCTACTGTCGGAAATTAG 59.464 50.000 0.00 0.00 0.00 1.73
381 436 3.733988 CGCTGCTACTGTCGGAAATTAGA 60.734 47.826 0.00 0.00 0.00 2.10
382 437 4.181578 GCTGCTACTGTCGGAAATTAGAA 58.818 43.478 0.00 0.00 0.00 2.10
383 438 4.811557 GCTGCTACTGTCGGAAATTAGAAT 59.188 41.667 0.00 0.00 0.00 2.40
384 439 5.294552 GCTGCTACTGTCGGAAATTAGAATT 59.705 40.000 0.00 0.00 0.00 2.17
385 440 6.479001 GCTGCTACTGTCGGAAATTAGAATTA 59.521 38.462 0.00 0.00 0.00 1.40
386 441 7.011109 GCTGCTACTGTCGGAAATTAGAATTAA 59.989 37.037 0.00 0.00 0.00 1.40
387 442 8.958119 TGCTACTGTCGGAAATTAGAATTAAT 57.042 30.769 0.00 0.00 0.00 1.40
388 443 9.391006 TGCTACTGTCGGAAATTAGAATTAATT 57.609 29.630 0.00 0.00 40.37 1.40
405 460 9.713684 AGAATTAATTAATGGGAGGAAACATGA 57.286 29.630 11.42 0.00 0.00 3.07
408 463 9.713684 ATTAATTAATGGGAGGAAACATGAAGA 57.286 29.630 9.93 0.00 0.00 2.87
409 464 7.410120 AATTAATGGGAGGAAACATGAAGAC 57.590 36.000 0.00 0.00 0.00 3.01
410 465 4.387026 AATGGGAGGAAACATGAAGACA 57.613 40.909 0.00 0.00 0.00 3.41
411 466 3.874383 TGGGAGGAAACATGAAGACAA 57.126 42.857 0.00 0.00 0.00 3.18
412 467 4.177537 TGGGAGGAAACATGAAGACAAA 57.822 40.909 0.00 0.00 0.00 2.83
413 468 4.739793 TGGGAGGAAACATGAAGACAAAT 58.260 39.130 0.00 0.00 0.00 2.32
414 469 5.886609 TGGGAGGAAACATGAAGACAAATA 58.113 37.500 0.00 0.00 0.00 1.40
415 470 6.310941 TGGGAGGAAACATGAAGACAAATAA 58.689 36.000 0.00 0.00 0.00 1.40
416 471 6.780031 TGGGAGGAAACATGAAGACAAATAAA 59.220 34.615 0.00 0.00 0.00 1.40
417 472 7.454380 TGGGAGGAAACATGAAGACAAATAAAT 59.546 33.333 0.00 0.00 0.00 1.40
418 473 8.966868 GGGAGGAAACATGAAGACAAATAAATA 58.033 33.333 0.00 0.00 0.00 1.40
587 643 6.563222 TTTACCTACGGACTTGATTTTTGG 57.437 37.500 0.00 0.00 0.00 3.28
600 656 9.206870 GACTTGATTTTTGGATAGAAAAATGCA 57.793 29.630 8.33 0.00 42.76 3.96
614 670 5.127682 AGAAAAATGCAGGTGTCTCAAGTTT 59.872 36.000 0.00 0.00 0.00 2.66
624 680 1.734465 GTCTCAAGTTTGGCTCCATCG 59.266 52.381 0.00 0.00 0.00 3.84
626 682 2.565391 TCTCAAGTTTGGCTCCATCGTA 59.435 45.455 0.00 0.00 0.00 3.43
664 720 1.118838 GTGGTGCAGGAGCTAGAGAT 58.881 55.000 0.00 0.00 42.74 2.75
670 726 1.969923 GCAGGAGCTAGAGATGGACAT 59.030 52.381 0.00 0.00 37.91 3.06
690 746 8.150945 TGGACATCTATTTAAACTCTATCCAGC 58.849 37.037 0.00 0.00 0.00 4.85
775 832 7.078851 ACAAAATGTAACGCATATTTCAACGA 58.921 30.769 0.00 0.00 36.67 3.85
849 910 2.035961 TGTGAAGAAGGAGAGTTGGTCG 59.964 50.000 0.00 0.00 0.00 4.79
875 936 5.278604 CCCTTCAAGAGGTTTTGTTAAACG 58.721 41.667 0.00 0.00 44.71 3.60
911 972 5.477607 TCCTTTGATCACGACCTTCTTAA 57.522 39.130 0.00 0.00 0.00 1.85
961 1023 3.263170 TGACAGAGGCAGGTTTATTGCTA 59.737 43.478 0.00 0.00 41.27 3.49
1048 1110 1.810151 GTCTAACATTGGCGCAAAGGA 59.190 47.619 17.41 0.00 0.00 3.36
1182 1245 5.295787 TCATTATGCCTGTGATTTCGTTACC 59.704 40.000 0.00 0.00 0.00 2.85
1312 1375 8.788806 ACGAAATTGTAATGTTCCTCATAAACA 58.211 29.630 0.00 0.00 40.63 2.83
1384 1462 1.300775 CTCTATCCAGCGCTGCCAG 60.301 63.158 31.96 24.53 0.00 4.85
1402 1480 3.726607 CCAGCATCAAGATAGAGGTCAC 58.273 50.000 0.00 0.00 0.00 3.67
1406 1484 4.411540 AGCATCAAGATAGAGGTCACCATT 59.588 41.667 0.00 0.00 0.00 3.16
1424 1502 4.450082 CATTATGGATGGATACGGACGA 57.550 45.455 0.00 0.00 42.51 4.20
1428 1506 2.934887 TGGATGGATACGGACGACTTA 58.065 47.619 0.00 0.00 42.51 2.24
1445 1523 7.349412 ACGACTTATCTGCTATAAGAAACCT 57.651 36.000 19.79 3.89 35.97 3.50
1446 1524 7.783042 ACGACTTATCTGCTATAAGAAACCTT 58.217 34.615 19.79 3.36 35.97 3.50
1461 1539 2.271944 ACCTTACCTTGCTCGCTTTT 57.728 45.000 0.00 0.00 0.00 2.27
1466 1544 2.781945 ACCTTGCTCGCTTTTTCAAG 57.218 45.000 0.00 0.00 36.57 3.02
1505 1595 2.850060 TCTTATTTGTCGCTCGCTTACG 59.150 45.455 0.00 0.00 42.01 3.18
1543 1633 5.539582 TCGAATTTCCTTAATTGGTCACG 57.460 39.130 0.00 0.00 36.59 4.35
1621 1873 5.163281 TGCAACCAATAGGCAATGAATTT 57.837 34.783 0.00 0.00 39.06 1.82
1646 1898 2.730382 TCTACCGCAGTCTTACCATGA 58.270 47.619 0.00 0.00 0.00 3.07
1696 1949 0.898320 CAAGGTCCATCGTCCAGTCT 59.102 55.000 0.00 0.00 0.00 3.24
1790 2043 2.225467 GTTTGCTCCTCAGTGAAGCTT 58.775 47.619 15.94 0.00 0.00 3.74
1792 2045 0.761187 TGCTCCTCAGTGAAGCTTGT 59.239 50.000 15.94 0.00 0.00 3.16
1811 2065 1.933853 GTGAGCGTGGGAATGATACAC 59.066 52.381 0.00 0.00 0.00 2.90
1812 2066 1.552792 TGAGCGTGGGAATGATACACA 59.447 47.619 0.00 0.00 34.91 3.72
1853 2107 1.150536 GGGGCGCCAATCATCCTTA 59.849 57.895 30.85 0.00 0.00 2.69
1926 2431 1.067425 CAACACGGATGGGTCGTTAGA 60.067 52.381 0.00 0.00 38.94 2.10
1951 2456 0.881118 GCGAGCATTTGTTTCTCCCA 59.119 50.000 0.00 0.00 0.00 4.37
1973 2478 1.299773 CAACGCACGGGCACATTTT 60.300 52.632 11.77 0.00 41.24 1.82
1983 2488 5.764131 CACGGGCACATTTTCTAGTTTTTA 58.236 37.500 0.00 0.00 0.00 1.52
1984 2489 5.627780 CACGGGCACATTTTCTAGTTTTTAC 59.372 40.000 0.00 0.00 0.00 2.01
1985 2490 5.533528 ACGGGCACATTTTCTAGTTTTTACT 59.466 36.000 0.00 0.00 0.00 2.24
1987 2492 7.229106 ACGGGCACATTTTCTAGTTTTTACTAA 59.771 33.333 0.00 0.00 0.00 2.24
1988 2493 8.241367 CGGGCACATTTTCTAGTTTTTACTAAT 58.759 33.333 0.00 0.00 0.00 1.73
1989 2494 9.923143 GGGCACATTTTCTAGTTTTTACTAATT 57.077 29.630 0.00 0.00 0.00 1.40
2023 2528 7.681939 TTATTGTTTAGGTTGAGCGATTTCT 57.318 32.000 0.00 0.00 0.00 2.52
2024 2529 8.780846 TTATTGTTTAGGTTGAGCGATTTCTA 57.219 30.769 0.00 0.00 0.00 2.10
2025 2530 7.681939 ATTGTTTAGGTTGAGCGATTTCTAA 57.318 32.000 0.00 0.00 0.00 2.10
2026 2531 7.681939 TTGTTTAGGTTGAGCGATTTCTAAT 57.318 32.000 0.00 0.00 0.00 1.73
2027 2532 8.780846 TTGTTTAGGTTGAGCGATTTCTAATA 57.219 30.769 0.00 0.00 0.00 0.98
2028 2533 8.193250 TGTTTAGGTTGAGCGATTTCTAATAC 57.807 34.615 0.00 0.00 0.00 1.89
2029 2534 7.279313 TGTTTAGGTTGAGCGATTTCTAATACC 59.721 37.037 0.00 0.00 0.00 2.73
2030 2535 5.615925 AGGTTGAGCGATTTCTAATACCT 57.384 39.130 0.00 0.00 0.00 3.08
2031 2536 6.726490 AGGTTGAGCGATTTCTAATACCTA 57.274 37.500 0.00 0.00 32.03 3.08
2032 2537 7.304497 AGGTTGAGCGATTTCTAATACCTAT 57.696 36.000 0.00 0.00 32.03 2.57
2033 2538 7.379750 AGGTTGAGCGATTTCTAATACCTATC 58.620 38.462 0.00 0.00 32.03 2.08
2034 2539 7.233757 AGGTTGAGCGATTTCTAATACCTATCT 59.766 37.037 0.00 0.00 32.03 1.98
2035 2540 7.873505 GGTTGAGCGATTTCTAATACCTATCTT 59.126 37.037 0.00 0.00 0.00 2.40
2036 2541 9.262358 GTTGAGCGATTTCTAATACCTATCTTT 57.738 33.333 0.00 0.00 0.00 2.52
2037 2542 9.477484 TTGAGCGATTTCTAATACCTATCTTTC 57.523 33.333 0.00 0.00 0.00 2.62
2038 2543 7.808381 TGAGCGATTTCTAATACCTATCTTTCG 59.192 37.037 0.00 0.00 0.00 3.46
2039 2544 7.883217 AGCGATTTCTAATACCTATCTTTCGA 58.117 34.615 0.00 0.00 0.00 3.71
2040 2545 8.358148 AGCGATTTCTAATACCTATCTTTCGAA 58.642 33.333 0.00 0.00 0.00 3.71
2041 2546 8.426251 GCGATTTCTAATACCTATCTTTCGAAC 58.574 37.037 0.00 0.00 0.00 3.95
2042 2547 9.459640 CGATTTCTAATACCTATCTTTCGAACA 57.540 33.333 0.00 0.00 0.00 3.18
2049 2554 8.786826 AATACCTATCTTTCGAACATTGAACA 57.213 30.769 0.00 0.00 0.00 3.18
2050 2555 8.786826 ATACCTATCTTTCGAACATTGAACAA 57.213 30.769 0.00 0.00 0.00 2.83
2051 2556 7.687941 ACCTATCTTTCGAACATTGAACAAT 57.312 32.000 0.00 0.00 0.00 2.71
2064 2569 4.842531 TTGAACAATGAGCTATCCTCCA 57.157 40.909 0.00 0.00 39.98 3.86
2065 2570 4.142609 TGAACAATGAGCTATCCTCCAC 57.857 45.455 0.00 0.00 39.98 4.02
2066 2571 3.519107 TGAACAATGAGCTATCCTCCACA 59.481 43.478 0.00 0.00 39.98 4.17
2067 2572 4.019411 TGAACAATGAGCTATCCTCCACAA 60.019 41.667 0.00 0.00 39.98 3.33
2068 2573 4.785346 ACAATGAGCTATCCTCCACAAT 57.215 40.909 0.00 0.00 39.98 2.71
2069 2574 5.121380 ACAATGAGCTATCCTCCACAATT 57.879 39.130 0.00 0.00 39.98 2.32
2070 2575 5.513233 ACAATGAGCTATCCTCCACAATTT 58.487 37.500 0.00 0.00 39.98 1.82
2071 2576 6.662755 ACAATGAGCTATCCTCCACAATTTA 58.337 36.000 0.00 0.00 39.98 1.40
2072 2577 7.293073 ACAATGAGCTATCCTCCACAATTTAT 58.707 34.615 0.00 0.00 39.98 1.40
2073 2578 8.439971 ACAATGAGCTATCCTCCACAATTTATA 58.560 33.333 0.00 0.00 39.98 0.98
2074 2579 8.725148 CAATGAGCTATCCTCCACAATTTATAC 58.275 37.037 0.00 0.00 39.98 1.47
2075 2580 7.618019 TGAGCTATCCTCCACAATTTATACT 57.382 36.000 0.00 0.00 39.98 2.12
2076 2581 8.034313 TGAGCTATCCTCCACAATTTATACTT 57.966 34.615 0.00 0.00 39.98 2.24
2077 2582 9.154632 TGAGCTATCCTCCACAATTTATACTTA 57.845 33.333 0.00 0.00 39.98 2.24
2078 2583 9.425577 GAGCTATCCTCCACAATTTATACTTAC 57.574 37.037 0.00 0.00 34.35 2.34
2079 2584 8.934697 AGCTATCCTCCACAATTTATACTTACA 58.065 33.333 0.00 0.00 0.00 2.41
2080 2585 9.555727 GCTATCCTCCACAATTTATACTTACAA 57.444 33.333 0.00 0.00 0.00 2.41
2082 2587 8.980481 ATCCTCCACAATTTATACTTACAAGG 57.020 34.615 0.00 0.00 0.00 3.61
2083 2588 7.343357 TCCTCCACAATTTATACTTACAAGGG 58.657 38.462 0.00 0.00 0.00 3.95
2084 2589 6.546034 CCTCCACAATTTATACTTACAAGGGG 59.454 42.308 0.00 0.00 0.00 4.79
2085 2590 7.034967 TCCACAATTTATACTTACAAGGGGT 57.965 36.000 0.00 0.00 0.00 4.95
2086 2591 7.471890 TCCACAATTTATACTTACAAGGGGTT 58.528 34.615 0.00 0.00 0.00 4.11
2087 2592 8.613034 TCCACAATTTATACTTACAAGGGGTTA 58.387 33.333 0.00 0.00 0.00 2.85
2088 2593 9.245481 CCACAATTTATACTTACAAGGGGTTAA 57.755 33.333 0.00 0.00 0.00 2.01
2097 2602 9.901172 ATACTTACAAGGGGTTAACTTGATAAG 57.099 33.333 11.65 14.80 46.27 1.73
2098 2603 7.981142 ACTTACAAGGGGTTAACTTGATAAGA 58.019 34.615 20.77 2.97 46.27 2.10
2099 2604 8.612145 ACTTACAAGGGGTTAACTTGATAAGAT 58.388 33.333 20.77 11.12 46.27 2.40
2102 2607 8.803397 ACAAGGGGTTAACTTGATAAGATAAC 57.197 34.615 11.65 11.15 46.27 1.89
2103 2608 8.387813 ACAAGGGGTTAACTTGATAAGATAACA 58.612 33.333 17.60 0.00 46.27 2.41
2104 2609 9.238368 CAAGGGGTTAACTTGATAAGATAACAA 57.762 33.333 17.60 0.00 46.27 2.83
2105 2610 8.803397 AGGGGTTAACTTGATAAGATAACAAC 57.197 34.615 17.60 12.03 44.11 3.32
2106 2611 8.612145 AGGGGTTAACTTGATAAGATAACAACT 58.388 33.333 17.60 13.30 44.11 3.16
2107 2612 8.674607 GGGGTTAACTTGATAAGATAACAACTG 58.325 37.037 17.60 0.00 44.11 3.16
2108 2613 9.444600 GGGTTAACTTGATAAGATAACAACTGA 57.555 33.333 17.60 0.00 44.11 3.41
2141 2646 4.789012 TTTCTAAAATGCTGCCAGAAGG 57.211 40.909 0.00 0.00 38.23 3.46
2142 2647 3.719268 TCTAAAATGCTGCCAGAAGGA 57.281 42.857 0.00 0.00 36.89 3.36
2143 2648 4.240881 TCTAAAATGCTGCCAGAAGGAT 57.759 40.909 0.00 0.00 36.89 3.24
2144 2649 3.949754 TCTAAAATGCTGCCAGAAGGATG 59.050 43.478 0.00 0.00 36.89 3.51
2145 2650 0.822164 AAATGCTGCCAGAAGGATGC 59.178 50.000 0.00 0.00 36.89 3.91
2146 2651 0.323999 AATGCTGCCAGAAGGATGCA 60.324 50.000 0.00 0.00 44.50 3.96
2147 2652 1.035932 ATGCTGCCAGAAGGATGCAC 61.036 55.000 0.00 0.00 43.68 4.57
2148 2653 1.676635 GCTGCCAGAAGGATGCACA 60.677 57.895 0.00 0.00 36.89 4.57
2149 2654 1.035932 GCTGCCAGAAGGATGCACAT 61.036 55.000 0.00 0.00 36.89 3.21
2150 2655 0.738975 CTGCCAGAAGGATGCACATG 59.261 55.000 0.00 0.00 36.89 3.21
2151 2656 1.317431 TGCCAGAAGGATGCACATGC 61.317 55.000 0.00 0.00 38.32 4.06
2152 2657 1.317431 GCCAGAAGGATGCACATGCA 61.317 55.000 9.36 9.36 45.51 3.96
2153 2658 3.214119 GCCAGAAGGATGCACATGCAG 62.214 57.143 12.78 0.00 44.98 4.41
2175 2680 9.850198 TGCAGCAGAATATATATATATTGCCAA 57.150 29.630 25.84 13.65 38.58 4.52
2216 2721 9.558648 AAGAAAAGAAAATTTTGTTTGCATGAC 57.441 25.926 25.48 14.00 34.41 3.06
2217 2722 8.728833 AGAAAAGAAAATTTTGTTTGCATGACA 58.271 25.926 25.48 0.00 34.41 3.58
2218 2723 9.339492 GAAAAGAAAATTTTGTTTGCATGACAA 57.661 25.926 22.37 10.98 34.41 3.18
2219 2724 9.688592 AAAAGAAAATTTTGTTTGCATGACAAA 57.311 22.222 22.37 19.21 46.01 2.83
2235 2740 8.397906 TGCATGACAAAATATAACTTCTACAGC 58.602 33.333 0.00 0.00 0.00 4.40
2236 2741 8.397906 GCATGACAAAATATAACTTCTACAGCA 58.602 33.333 0.00 0.00 0.00 4.41
2237 2742 9.926751 CATGACAAAATATAACTTCTACAGCAG 57.073 33.333 0.00 0.00 0.00 4.24
2238 2743 7.974675 TGACAAAATATAACTTCTACAGCAGC 58.025 34.615 0.00 0.00 0.00 5.25
2239 2744 7.065803 TGACAAAATATAACTTCTACAGCAGCC 59.934 37.037 0.00 0.00 0.00 4.85
2240 2745 6.884295 ACAAAATATAACTTCTACAGCAGCCA 59.116 34.615 0.00 0.00 0.00 4.75
2241 2746 7.393234 ACAAAATATAACTTCTACAGCAGCCAA 59.607 33.333 0.00 0.00 0.00 4.52
2242 2747 7.938140 AAATATAACTTCTACAGCAGCCAAA 57.062 32.000 0.00 0.00 0.00 3.28
2243 2748 8.525290 AAATATAACTTCTACAGCAGCCAAAT 57.475 30.769 0.00 0.00 0.00 2.32
2244 2749 7.736447 ATATAACTTCTACAGCAGCCAAATC 57.264 36.000 0.00 0.00 0.00 2.17
2245 2750 3.710209 ACTTCTACAGCAGCCAAATCT 57.290 42.857 0.00 0.00 0.00 2.40
2246 2751 4.026356 ACTTCTACAGCAGCCAAATCTT 57.974 40.909 0.00 0.00 0.00 2.40
2247 2752 5.165961 ACTTCTACAGCAGCCAAATCTTA 57.834 39.130 0.00 0.00 0.00 2.10
2248 2753 5.560724 ACTTCTACAGCAGCCAAATCTTAA 58.439 37.500 0.00 0.00 0.00 1.85
2249 2754 6.003950 ACTTCTACAGCAGCCAAATCTTAAA 58.996 36.000 0.00 0.00 0.00 1.52
2250 2755 6.490040 ACTTCTACAGCAGCCAAATCTTAAAA 59.510 34.615 0.00 0.00 0.00 1.52
2251 2756 6.500684 TCTACAGCAGCCAAATCTTAAAAG 57.499 37.500 0.00 0.00 0.00 2.27
2252 2757 3.917988 ACAGCAGCCAAATCTTAAAAGC 58.082 40.909 0.00 0.00 0.00 3.51
2253 2758 3.321682 ACAGCAGCCAAATCTTAAAAGCA 59.678 39.130 0.00 0.00 0.00 3.91
2254 2759 4.020839 ACAGCAGCCAAATCTTAAAAGCAT 60.021 37.500 0.00 0.00 0.00 3.79
2255 2760 5.185635 ACAGCAGCCAAATCTTAAAAGCATA 59.814 36.000 0.00 0.00 0.00 3.14
2256 2761 6.101332 CAGCAGCCAAATCTTAAAAGCATAA 58.899 36.000 0.00 0.00 0.00 1.90
2257 2762 6.255020 CAGCAGCCAAATCTTAAAAGCATAAG 59.745 38.462 0.00 0.00 34.79 1.73
2258 2763 6.153340 AGCAGCCAAATCTTAAAAGCATAAGA 59.847 34.615 8.49 8.49 43.87 2.10
2259 2764 6.813152 GCAGCCAAATCTTAAAAGCATAAGAA 59.187 34.615 9.70 0.00 43.20 2.52
2260 2765 7.201470 GCAGCCAAATCTTAAAAGCATAAGAAC 60.201 37.037 9.70 1.21 43.20 3.01
2261 2766 8.031277 CAGCCAAATCTTAAAAGCATAAGAACT 58.969 33.333 9.70 0.74 43.20 3.01
2262 2767 9.243105 AGCCAAATCTTAAAAGCATAAGAACTA 57.757 29.630 9.70 0.00 43.20 2.24
2263 2768 9.855021 GCCAAATCTTAAAAGCATAAGAACTAA 57.145 29.630 9.70 0.00 43.20 2.24
2270 2775 9.495754 CTTAAAAGCATAAGAACTAATGTGAGC 57.504 33.333 0.00 0.00 35.35 4.26
2271 2776 7.452880 AAAAGCATAAGAACTAATGTGAGCA 57.547 32.000 0.00 0.00 0.00 4.26
2272 2777 6.428385 AAGCATAAGAACTAATGTGAGCAC 57.572 37.500 0.00 0.00 0.00 4.40
2273 2778 5.738909 AGCATAAGAACTAATGTGAGCACT 58.261 37.500 1.99 0.00 0.00 4.40
2274 2779 6.176183 AGCATAAGAACTAATGTGAGCACTT 58.824 36.000 1.99 0.00 0.00 3.16
2275 2780 6.656693 AGCATAAGAACTAATGTGAGCACTTT 59.343 34.615 1.99 4.77 33.90 2.66
2276 2781 7.175641 AGCATAAGAACTAATGTGAGCACTTTT 59.824 33.333 7.00 1.97 32.10 2.27
2277 2782 7.809806 GCATAAGAACTAATGTGAGCACTTTTT 59.190 33.333 7.00 0.00 32.10 1.94
2307 2812 7.601073 TCAAGTTGTGATGTTGTCTCATATC 57.399 36.000 2.11 0.00 31.03 1.63
2308 2813 6.595326 TCAAGTTGTGATGTTGTCTCATATCC 59.405 38.462 2.11 0.00 31.03 2.59
2309 2814 6.305272 AGTTGTGATGTTGTCTCATATCCT 57.695 37.500 0.00 0.00 31.03 3.24
2310 2815 6.344500 AGTTGTGATGTTGTCTCATATCCTC 58.656 40.000 0.00 0.00 31.03 3.71
2311 2816 6.155910 AGTTGTGATGTTGTCTCATATCCTCT 59.844 38.462 0.00 0.00 31.03 3.69
2312 2817 7.343057 AGTTGTGATGTTGTCTCATATCCTCTA 59.657 37.037 0.00 0.00 31.03 2.43
2313 2818 7.282332 TGTGATGTTGTCTCATATCCTCTAG 57.718 40.000 0.00 0.00 0.00 2.43
2314 2819 6.155827 GTGATGTTGTCTCATATCCTCTAGC 58.844 44.000 0.00 0.00 0.00 3.42
2315 2820 4.837896 TGTTGTCTCATATCCTCTAGCG 57.162 45.455 0.00 0.00 0.00 4.26
2316 2821 4.461198 TGTTGTCTCATATCCTCTAGCGA 58.539 43.478 0.00 0.00 0.00 4.93
2317 2822 5.073428 TGTTGTCTCATATCCTCTAGCGAT 58.927 41.667 0.00 0.00 0.00 4.58
2318 2823 6.238648 TGTTGTCTCATATCCTCTAGCGATA 58.761 40.000 0.00 2.86 0.00 2.92
2319 2824 6.715264 TGTTGTCTCATATCCTCTAGCGATAA 59.285 38.462 4.15 0.00 0.00 1.75
2320 2825 7.394641 TGTTGTCTCATATCCTCTAGCGATAAT 59.605 37.037 4.15 0.00 0.00 1.28
2321 2826 7.326968 TGTCTCATATCCTCTAGCGATAATG 57.673 40.000 4.15 0.00 0.00 1.90
2322 2827 6.887002 TGTCTCATATCCTCTAGCGATAATGT 59.113 38.462 4.15 0.00 0.00 2.71
2323 2828 7.148171 TGTCTCATATCCTCTAGCGATAATGTG 60.148 40.741 4.15 0.00 0.00 3.21
2324 2829 6.319911 TCTCATATCCTCTAGCGATAATGTGG 59.680 42.308 4.15 0.00 0.00 4.17
2325 2830 5.952347 TCATATCCTCTAGCGATAATGTGGT 59.048 40.000 4.15 0.00 0.00 4.16
2326 2831 4.792521 ATCCTCTAGCGATAATGTGGTC 57.207 45.455 0.00 0.00 0.00 4.02
2327 2832 3.562182 TCCTCTAGCGATAATGTGGTCA 58.438 45.455 0.00 0.00 0.00 4.02
2328 2833 3.958147 TCCTCTAGCGATAATGTGGTCAA 59.042 43.478 0.00 0.00 0.00 3.18
2329 2834 4.588951 TCCTCTAGCGATAATGTGGTCAAT 59.411 41.667 0.00 0.00 0.00 2.57
2330 2835 5.773176 TCCTCTAGCGATAATGTGGTCAATA 59.227 40.000 0.00 0.00 0.00 1.90
2331 2836 6.437477 TCCTCTAGCGATAATGTGGTCAATAT 59.563 38.462 0.00 0.00 0.00 1.28
2332 2837 6.754209 CCTCTAGCGATAATGTGGTCAATATC 59.246 42.308 0.00 0.00 34.74 1.63
2333 2838 7.363355 CCTCTAGCGATAATGTGGTCAATATCT 60.363 40.741 0.00 0.00 35.47 1.98
2334 2839 7.896811 TCTAGCGATAATGTGGTCAATATCTT 58.103 34.615 0.00 0.00 35.47 2.40
2335 2840 9.020731 TCTAGCGATAATGTGGTCAATATCTTA 57.979 33.333 0.00 0.00 35.47 2.10
2336 2841 7.891183 AGCGATAATGTGGTCAATATCTTAC 57.109 36.000 0.00 0.00 35.47 2.34
2337 2842 7.441836 AGCGATAATGTGGTCAATATCTTACA 58.558 34.615 0.00 0.00 35.47 2.41
2338 2843 8.097038 AGCGATAATGTGGTCAATATCTTACAT 58.903 33.333 0.00 0.00 35.47 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.754890 CCTTGAAACCAAGAAAACTCAATGG 59.245 40.000 6.73 0.00 42.71 3.16
37 38 6.683861 GCTCCTTGAAACCAAGAAAACTCAAT 60.684 38.462 6.73 0.00 42.71 2.57
86 88 7.779798 TCTTCATATTACTGGGCAGCTTATTTT 59.220 33.333 0.00 0.00 0.00 1.82
108 110 9.495572 TTCTTATGTTTCTCTCTTTCCTTCTTC 57.504 33.333 0.00 0.00 0.00 2.87
127 158 7.792374 TCGAAATCCCTCATTTCTTCTTATG 57.208 36.000 5.72 0.00 45.92 1.90
136 167 7.834181 TCCTTATTCTTTCGAAATCCCTCATTT 59.166 33.333 11.70 0.00 37.41 2.32
207 261 7.792374 TCGAAATCCCTCATTTCTTCTTATG 57.208 36.000 5.72 0.00 45.92 1.90
216 270 7.834181 TCCTTATTCTTTCGAAATCCCTCATTT 59.166 33.333 11.70 0.00 37.41 2.32
223 277 6.657836 TCGTTCCTTATTCTTTCGAAATCC 57.342 37.500 11.70 0.00 31.91 3.01
230 284 8.480643 TCATCTCTTTCGTTCCTTATTCTTTC 57.519 34.615 0.00 0.00 0.00 2.62
267 322 7.486407 AAGATTATTGCATGTCCTTCCTTTT 57.514 32.000 0.00 0.00 0.00 2.27
272 327 6.319658 TCTCCAAAGATTATTGCATGTCCTTC 59.680 38.462 0.00 0.00 0.00 3.46
278 333 5.009410 GGGTCTCTCCAAAGATTATTGCATG 59.991 44.000 0.00 0.00 38.11 4.06
280 335 4.018506 TGGGTCTCTCCAAAGATTATTGCA 60.019 41.667 0.00 0.00 38.11 4.08
291 346 3.618997 GCGTCTTATTTGGGTCTCTCCAA 60.619 47.826 0.00 0.00 44.29 3.53
292 347 2.093658 GCGTCTTATTTGGGTCTCTCCA 60.094 50.000 0.00 0.00 38.11 3.86
293 348 2.552031 GCGTCTTATTTGGGTCTCTCC 58.448 52.381 0.00 0.00 0.00 3.71
294 349 2.552031 GGCGTCTTATTTGGGTCTCTC 58.448 52.381 0.00 0.00 0.00 3.20
295 350 1.209747 GGGCGTCTTATTTGGGTCTCT 59.790 52.381 0.00 0.00 0.00 3.10
296 351 1.065709 TGGGCGTCTTATTTGGGTCTC 60.066 52.381 0.00 0.00 0.00 3.36
297 352 0.988832 TGGGCGTCTTATTTGGGTCT 59.011 50.000 0.00 0.00 0.00 3.85
298 353 1.092348 GTGGGCGTCTTATTTGGGTC 58.908 55.000 0.00 0.00 0.00 4.46
299 354 0.696501 AGTGGGCGTCTTATTTGGGT 59.303 50.000 0.00 0.00 0.00 4.51
300 355 2.702592 TAGTGGGCGTCTTATTTGGG 57.297 50.000 0.00 0.00 0.00 4.12
301 356 7.972832 TTATATTAGTGGGCGTCTTATTTGG 57.027 36.000 0.00 0.00 0.00 3.28
327 382 8.547481 TCTTTCCCTTTTTCTATGTTTCCTTT 57.453 30.769 0.00 0.00 0.00 3.11
335 390 7.467623 CGTTGATCTCTTTCCCTTTTTCTATG 58.532 38.462 0.00 0.00 0.00 2.23
337 392 5.411669 GCGTTGATCTCTTTCCCTTTTTCTA 59.588 40.000 0.00 0.00 0.00 2.10
345 400 0.729690 GCAGCGTTGATCTCTTTCCC 59.270 55.000 2.38 0.00 0.00 3.97
346 401 1.731720 AGCAGCGTTGATCTCTTTCC 58.268 50.000 2.38 0.00 0.00 3.13
347 402 3.305629 CAGTAGCAGCGTTGATCTCTTTC 59.694 47.826 2.38 0.00 0.00 2.62
348 403 3.257393 CAGTAGCAGCGTTGATCTCTTT 58.743 45.455 2.38 0.00 0.00 2.52
352 407 1.468224 CGACAGTAGCAGCGTTGATCT 60.468 52.381 2.38 0.00 0.00 2.75
353 408 0.917259 CGACAGTAGCAGCGTTGATC 59.083 55.000 2.38 0.00 0.00 2.92
356 411 0.666274 TTCCGACAGTAGCAGCGTTG 60.666 55.000 0.00 0.00 0.00 4.10
358 413 0.246635 ATTTCCGACAGTAGCAGCGT 59.753 50.000 0.00 0.00 0.00 5.07
359 414 1.359848 AATTTCCGACAGTAGCAGCG 58.640 50.000 0.00 0.00 0.00 5.18
360 415 3.782046 TCTAATTTCCGACAGTAGCAGC 58.218 45.455 0.00 0.00 0.00 5.25
361 416 6.910536 AATTCTAATTTCCGACAGTAGCAG 57.089 37.500 0.00 0.00 0.00 4.24
362 417 8.958119 ATTAATTCTAATTTCCGACAGTAGCA 57.042 30.769 0.00 0.00 0.00 3.49
379 434 9.713684 TCATGTTTCCTCCCATTAATTAATTCT 57.286 29.630 8.01 0.00 0.00 2.40
382 437 9.713684 TCTTCATGTTTCCTCCCATTAATTAAT 57.286 29.630 4.81 4.81 0.00 1.40
383 438 8.966868 GTCTTCATGTTTCCTCCCATTAATTAA 58.033 33.333 0.00 0.00 0.00 1.40
384 439 8.112822 TGTCTTCATGTTTCCTCCCATTAATTA 58.887 33.333 0.00 0.00 0.00 1.40
385 440 6.953520 TGTCTTCATGTTTCCTCCCATTAATT 59.046 34.615 0.00 0.00 0.00 1.40
386 441 6.493166 TGTCTTCATGTTTCCTCCCATTAAT 58.507 36.000 0.00 0.00 0.00 1.40
387 442 5.886609 TGTCTTCATGTTTCCTCCCATTAA 58.113 37.500 0.00 0.00 0.00 1.40
388 443 5.512942 TGTCTTCATGTTTCCTCCCATTA 57.487 39.130 0.00 0.00 0.00 1.90
389 444 4.387026 TGTCTTCATGTTTCCTCCCATT 57.613 40.909 0.00 0.00 0.00 3.16
390 445 4.387026 TTGTCTTCATGTTTCCTCCCAT 57.613 40.909 0.00 0.00 0.00 4.00
391 446 3.874383 TTGTCTTCATGTTTCCTCCCA 57.126 42.857 0.00 0.00 0.00 4.37
392 447 6.834168 TTATTTGTCTTCATGTTTCCTCCC 57.166 37.500 0.00 0.00 0.00 4.30
440 495 9.653287 TTCTCACGAACTAATTCATCACTTAAT 57.347 29.630 0.00 0.00 34.14 1.40
441 496 9.653287 ATTCTCACGAACTAATTCATCACTTAA 57.347 29.630 0.00 0.00 34.14 1.85
442 497 9.653287 AATTCTCACGAACTAATTCATCACTTA 57.347 29.630 0.00 0.00 34.14 2.24
443 498 8.553459 AATTCTCACGAACTAATTCATCACTT 57.447 30.769 0.00 0.00 34.14 3.16
444 499 8.553459 AAATTCTCACGAACTAATTCATCACT 57.447 30.769 0.00 0.00 34.14 3.41
514 569 9.513906 TGTCATTTATTTGATTGAGTGGTCTAA 57.486 29.630 0.00 0.00 0.00 2.10
587 643 6.150140 ACTTGAGACACCTGCATTTTTCTATC 59.850 38.462 0.00 0.00 0.00 2.08
600 656 1.202818 GGAGCCAAACTTGAGACACCT 60.203 52.381 0.00 0.00 0.00 4.00
624 680 3.924686 ACGTTCTCCATGACGTTCAATAC 59.075 43.478 4.62 0.00 35.08 1.89
626 682 2.736721 CACGTTCTCCATGACGTTCAAT 59.263 45.455 7.51 0.00 36.64 2.57
664 720 8.150945 GCTGGATAGAGTTTAAATAGATGTCCA 58.849 37.037 0.00 1.82 0.00 4.02
677 733 6.155221 TGTTGAGATAGTGCTGGATAGAGTTT 59.845 38.462 0.00 0.00 0.00 2.66
678 734 5.658634 TGTTGAGATAGTGCTGGATAGAGTT 59.341 40.000 0.00 0.00 0.00 3.01
679 735 5.204292 TGTTGAGATAGTGCTGGATAGAGT 58.796 41.667 0.00 0.00 0.00 3.24
680 736 5.781210 TGTTGAGATAGTGCTGGATAGAG 57.219 43.478 0.00 0.00 0.00 2.43
681 737 5.011431 CCATGTTGAGATAGTGCTGGATAGA 59.989 44.000 0.00 0.00 0.00 1.98
682 738 5.221601 ACCATGTTGAGATAGTGCTGGATAG 60.222 44.000 0.00 0.00 0.00 2.08
683 739 4.655649 ACCATGTTGAGATAGTGCTGGATA 59.344 41.667 0.00 0.00 0.00 2.59
684 740 3.457380 ACCATGTTGAGATAGTGCTGGAT 59.543 43.478 0.00 0.00 0.00 3.41
685 741 2.840038 ACCATGTTGAGATAGTGCTGGA 59.160 45.455 0.00 0.00 0.00 3.86
686 742 3.272574 ACCATGTTGAGATAGTGCTGG 57.727 47.619 0.00 0.00 0.00 4.85
687 743 4.122776 GGTACCATGTTGAGATAGTGCTG 58.877 47.826 7.15 0.00 0.00 4.41
688 744 4.033709 AGGTACCATGTTGAGATAGTGCT 58.966 43.478 15.94 0.00 0.00 4.40
689 745 4.408182 AGGTACCATGTTGAGATAGTGC 57.592 45.455 15.94 0.00 0.00 4.40
690 746 6.042093 ACCATAGGTACCATGTTGAGATAGTG 59.958 42.308 15.94 2.46 32.11 2.74
773 830 1.209504 TGGTAAGGGCAAGGATTCTCG 59.790 52.381 0.00 0.00 0.00 4.04
775 832 1.992557 TGTGGTAAGGGCAAGGATTCT 59.007 47.619 0.00 0.00 0.00 2.40
875 936 2.053627 CAAAGGAAGCATCAACGTTGC 58.946 47.619 23.47 13.15 40.45 4.17
911 972 0.617413 CACTGCTCTCATTGTCCCCT 59.383 55.000 0.00 0.00 0.00 4.79
961 1023 7.501892 GCAAAAATCTATTCTCTCATTCCCTCT 59.498 37.037 0.00 0.00 0.00 3.69
1006 1068 7.290813 AGACCAAATTTGAGAGTTCTAACCTT 58.709 34.615 19.86 0.00 0.00 3.50
1015 1077 6.294731 GCCAATGTTAGACCAAATTTGAGAGT 60.295 38.462 19.86 8.91 0.00 3.24
1048 1110 2.807967 CGATAATGTGATTGCATCCCGT 59.192 45.455 0.00 0.00 0.00 5.28
1182 1245 5.403766 CCTATTACAGTGCTCAAATCTAGCG 59.596 44.000 0.00 0.00 43.11 4.26
1241 1304 9.688592 AATCAGAAGTCAAAGAAAATTTAGCTG 57.311 29.630 0.00 0.00 0.00 4.24
1384 1462 3.827008 TGGTGACCTCTATCTTGATGC 57.173 47.619 2.11 0.00 0.00 3.91
1406 1484 3.150458 AGTCGTCCGTATCCATCCATA 57.850 47.619 0.00 0.00 0.00 2.74
1424 1502 9.214962 AGGTAAGGTTTCTTATAGCAGATAAGT 57.785 33.333 14.60 2.16 37.74 2.24
1428 1506 6.768381 GCAAGGTAAGGTTTCTTATAGCAGAT 59.232 38.462 0.00 0.00 37.74 2.90
1445 1523 3.550030 GCTTGAAAAAGCGAGCAAGGTAA 60.550 43.478 0.00 0.00 43.38 2.85
1446 1524 2.031157 GCTTGAAAAAGCGAGCAAGGTA 60.031 45.455 0.00 0.00 43.38 3.08
1461 1539 6.484643 AGATCTACGTAAGGTATACGCTTGAA 59.515 38.462 13.68 0.00 43.97 2.69
1466 1544 9.059485 CAAATAAGATCTACGTAAGGTATACGC 57.941 37.037 7.83 0.00 43.97 4.42
1478 1556 3.118157 GCGAGCGACAAATAAGATCTACG 59.882 47.826 0.00 0.00 0.00 3.51
1505 1595 7.765228 GAAATTCGAATTTCCATGCAAAAAC 57.235 32.000 37.00 18.62 45.29 2.43
1565 1655 9.143631 GAATGTTCATTTGGAAGTTAGGAAATG 57.856 33.333 0.00 0.00 35.82 2.32
1621 1873 5.664294 TGGTAAGACTGCGGTAGATAAAA 57.336 39.130 0.00 0.00 0.00 1.52
1669 1922 4.120589 GGACGATGGACCTTGTTAAGATC 58.879 47.826 0.00 0.00 0.00 2.75
1696 1949 0.322816 GCAAGTCAAGGCCCTCATGA 60.323 55.000 0.00 0.00 0.00 3.07
1790 2043 1.552792 TGTATCATTCCCACGCTCACA 59.447 47.619 0.00 0.00 0.00 3.58
1792 2045 1.552792 TGTGTATCATTCCCACGCTCA 59.447 47.619 0.00 0.00 31.75 4.26
1812 2066 4.253685 CCCATCTCATTTACACTTGACGT 58.746 43.478 0.00 0.00 0.00 4.34
1926 2431 2.816087 AGAAACAAATGCTCGCATGTCT 59.184 40.909 4.99 1.72 36.68 3.41
1951 2456 4.341502 GTGCCCGTGCGTTGCAAT 62.342 61.111 0.59 0.00 41.47 3.56
1997 2502 9.391006 AGAAATCGCTCAACCTAAACAATAATA 57.609 29.630 0.00 0.00 0.00 0.98
1998 2503 8.281212 AGAAATCGCTCAACCTAAACAATAAT 57.719 30.769 0.00 0.00 0.00 1.28
1999 2504 7.681939 AGAAATCGCTCAACCTAAACAATAA 57.318 32.000 0.00 0.00 0.00 1.40
2000 2505 8.780846 TTAGAAATCGCTCAACCTAAACAATA 57.219 30.769 0.00 0.00 0.00 1.90
2001 2506 7.681939 TTAGAAATCGCTCAACCTAAACAAT 57.318 32.000 0.00 0.00 0.00 2.71
2002 2507 7.681939 ATTAGAAATCGCTCAACCTAAACAA 57.318 32.000 0.00 0.00 0.00 2.83
2003 2508 7.279313 GGTATTAGAAATCGCTCAACCTAAACA 59.721 37.037 0.00 0.00 0.00 2.83
2004 2509 7.494952 AGGTATTAGAAATCGCTCAACCTAAAC 59.505 37.037 0.00 0.00 33.17 2.01
2005 2510 7.562135 AGGTATTAGAAATCGCTCAACCTAAA 58.438 34.615 0.00 0.00 33.17 1.85
2006 2511 7.120923 AGGTATTAGAAATCGCTCAACCTAA 57.879 36.000 0.00 0.00 33.17 2.69
2007 2512 6.726490 AGGTATTAGAAATCGCTCAACCTA 57.274 37.500 0.00 0.00 33.17 3.08
2008 2513 5.615925 AGGTATTAGAAATCGCTCAACCT 57.384 39.130 0.00 0.00 0.00 3.50
2009 2514 7.379750 AGATAGGTATTAGAAATCGCTCAACC 58.620 38.462 0.00 0.00 0.00 3.77
2010 2515 8.819643 AAGATAGGTATTAGAAATCGCTCAAC 57.180 34.615 0.00 0.00 0.00 3.18
2011 2516 9.477484 GAAAGATAGGTATTAGAAATCGCTCAA 57.523 33.333 0.00 0.00 0.00 3.02
2012 2517 7.808381 CGAAAGATAGGTATTAGAAATCGCTCA 59.192 37.037 0.00 0.00 0.00 4.26
2013 2518 8.021973 TCGAAAGATAGGTATTAGAAATCGCTC 58.978 37.037 0.00 0.00 33.31 5.03
2014 2519 7.883217 TCGAAAGATAGGTATTAGAAATCGCT 58.117 34.615 0.00 0.00 33.31 4.93
2015 2520 8.426251 GTTCGAAAGATAGGTATTAGAAATCGC 58.574 37.037 0.00 0.00 41.60 4.58
2016 2521 9.459640 TGTTCGAAAGATAGGTATTAGAAATCG 57.540 33.333 0.00 0.00 41.60 3.34
2023 2528 9.878667 TGTTCAATGTTCGAAAGATAGGTATTA 57.121 29.630 0.00 0.00 41.60 0.98
2024 2529 8.786826 TGTTCAATGTTCGAAAGATAGGTATT 57.213 30.769 0.00 0.00 41.60 1.89
2025 2530 8.786826 TTGTTCAATGTTCGAAAGATAGGTAT 57.213 30.769 0.00 0.00 41.60 2.73
2026 2531 8.664798 CATTGTTCAATGTTCGAAAGATAGGTA 58.335 33.333 14.96 0.00 41.60 3.08
2027 2532 7.390440 TCATTGTTCAATGTTCGAAAGATAGGT 59.610 33.333 20.23 0.00 41.60 3.08
2028 2533 7.751732 TCATTGTTCAATGTTCGAAAGATAGG 58.248 34.615 20.23 0.00 41.60 2.57
2029 2534 7.427606 GCTCATTGTTCAATGTTCGAAAGATAG 59.572 37.037 20.23 10.50 41.60 2.08
2030 2535 7.119699 AGCTCATTGTTCAATGTTCGAAAGATA 59.880 33.333 20.23 2.22 41.60 1.98
2031 2536 6.072286 AGCTCATTGTTCAATGTTCGAAAGAT 60.072 34.615 20.23 9.07 41.60 2.40
2032 2537 5.239306 AGCTCATTGTTCAATGTTCGAAAGA 59.761 36.000 20.23 0.00 39.20 2.52
2033 2538 5.455392 AGCTCATTGTTCAATGTTCGAAAG 58.545 37.500 20.23 12.64 0.00 2.62
2034 2539 5.437289 AGCTCATTGTTCAATGTTCGAAA 57.563 34.783 20.23 4.49 0.00 3.46
2035 2540 6.183360 GGATAGCTCATTGTTCAATGTTCGAA 60.183 38.462 20.23 0.00 0.00 3.71
2036 2541 5.294306 GGATAGCTCATTGTTCAATGTTCGA 59.706 40.000 20.23 12.22 0.00 3.71
2037 2542 5.295292 AGGATAGCTCATTGTTCAATGTTCG 59.705 40.000 20.23 13.15 0.00 3.95
2038 2543 6.238593 GGAGGATAGCTCATTGTTCAATGTTC 60.239 42.308 20.23 14.46 0.00 3.18
2039 2544 5.591877 GGAGGATAGCTCATTGTTCAATGTT 59.408 40.000 20.23 12.32 0.00 2.71
2040 2545 5.128919 GGAGGATAGCTCATTGTTCAATGT 58.871 41.667 20.23 8.30 0.00 2.71
2041 2546 5.008415 GTGGAGGATAGCTCATTGTTCAATG 59.992 44.000 16.52 16.52 0.00 2.82
2042 2547 5.128919 GTGGAGGATAGCTCATTGTTCAAT 58.871 41.667 0.00 0.00 0.00 2.57
2043 2548 4.019411 TGTGGAGGATAGCTCATTGTTCAA 60.019 41.667 0.00 0.00 0.00 2.69
2044 2549 3.519107 TGTGGAGGATAGCTCATTGTTCA 59.481 43.478 0.00 0.00 0.00 3.18
2045 2550 4.142609 TGTGGAGGATAGCTCATTGTTC 57.857 45.455 0.00 0.00 0.00 3.18
2046 2551 4.574674 TTGTGGAGGATAGCTCATTGTT 57.425 40.909 0.00 0.00 0.00 2.83
2047 2552 4.785346 ATTGTGGAGGATAGCTCATTGT 57.215 40.909 0.00 0.00 0.00 2.71
2048 2553 7.756395 ATAAATTGTGGAGGATAGCTCATTG 57.244 36.000 0.00 0.00 0.00 2.82
2049 2554 8.664079 AGTATAAATTGTGGAGGATAGCTCATT 58.336 33.333 0.00 0.00 0.00 2.57
2050 2555 8.212259 AGTATAAATTGTGGAGGATAGCTCAT 57.788 34.615 0.00 0.00 0.00 2.90
2051 2556 7.618019 AGTATAAATTGTGGAGGATAGCTCA 57.382 36.000 0.00 0.00 0.00 4.26
2052 2557 9.425577 GTAAGTATAAATTGTGGAGGATAGCTC 57.574 37.037 0.00 0.00 0.00 4.09
2053 2558 8.934697 TGTAAGTATAAATTGTGGAGGATAGCT 58.065 33.333 0.00 0.00 0.00 3.32
2054 2559 9.555727 TTGTAAGTATAAATTGTGGAGGATAGC 57.444 33.333 0.00 0.00 0.00 2.97
2057 2562 7.998964 CCCTTGTAAGTATAAATTGTGGAGGAT 59.001 37.037 0.00 0.00 0.00 3.24
2058 2563 7.343357 CCCTTGTAAGTATAAATTGTGGAGGA 58.657 38.462 0.00 0.00 0.00 3.71
2059 2564 6.546034 CCCCTTGTAAGTATAAATTGTGGAGG 59.454 42.308 0.00 0.00 0.00 4.30
2060 2565 7.116736 ACCCCTTGTAAGTATAAATTGTGGAG 58.883 38.462 0.00 0.00 0.00 3.86
2061 2566 7.034967 ACCCCTTGTAAGTATAAATTGTGGA 57.965 36.000 0.00 0.00 0.00 4.02
2062 2567 7.712204 AACCCCTTGTAAGTATAAATTGTGG 57.288 36.000 0.00 0.00 0.00 4.17
2071 2576 9.901172 CTTATCAAGTTAACCCCTTGTAAGTAT 57.099 33.333 0.88 0.00 40.15 2.12
2072 2577 9.103582 TCTTATCAAGTTAACCCCTTGTAAGTA 57.896 33.333 0.88 1.69 40.15 2.24
2073 2578 7.981142 TCTTATCAAGTTAACCCCTTGTAAGT 58.019 34.615 0.88 0.00 40.15 2.24
2076 2581 9.895138 GTTATCTTATCAAGTTAACCCCTTGTA 57.105 33.333 0.88 0.00 40.15 2.41
2077 2582 8.387813 TGTTATCTTATCAAGTTAACCCCTTGT 58.612 33.333 0.88 0.00 40.48 3.16
2078 2583 8.801882 TGTTATCTTATCAAGTTAACCCCTTG 57.198 34.615 0.88 0.81 40.48 3.61
2079 2584 9.239551 GTTGTTATCTTATCAAGTTAACCCCTT 57.760 33.333 0.88 0.00 40.48 3.95
2080 2585 8.612145 AGTTGTTATCTTATCAAGTTAACCCCT 58.388 33.333 0.88 8.62 40.48 4.79
2081 2586 8.674607 CAGTTGTTATCTTATCAAGTTAACCCC 58.325 37.037 0.88 7.20 40.48 4.95
2082 2587 9.444600 TCAGTTGTTATCTTATCAAGTTAACCC 57.555 33.333 0.88 7.43 40.48 4.11
2115 2620 8.632679 CCTTCTGGCAGCATTTTAGAAATATAA 58.367 33.333 10.34 0.00 0.00 0.98
2116 2621 7.998383 TCCTTCTGGCAGCATTTTAGAAATATA 59.002 33.333 10.34 0.00 0.00 0.86
2117 2622 6.835488 TCCTTCTGGCAGCATTTTAGAAATAT 59.165 34.615 10.34 0.00 0.00 1.28
2118 2623 6.186957 TCCTTCTGGCAGCATTTTAGAAATA 58.813 36.000 10.34 0.00 0.00 1.40
2119 2624 5.018809 TCCTTCTGGCAGCATTTTAGAAAT 58.981 37.500 10.34 0.00 0.00 2.17
2120 2625 4.406456 TCCTTCTGGCAGCATTTTAGAAA 58.594 39.130 10.34 0.00 0.00 2.52
2121 2626 4.032960 TCCTTCTGGCAGCATTTTAGAA 57.967 40.909 10.34 0.00 0.00 2.10
2122 2627 3.719268 TCCTTCTGGCAGCATTTTAGA 57.281 42.857 10.34 0.00 0.00 2.10
2123 2628 3.490419 GCATCCTTCTGGCAGCATTTTAG 60.490 47.826 10.34 0.00 34.48 1.85
2124 2629 2.428171 GCATCCTTCTGGCAGCATTTTA 59.572 45.455 10.34 0.00 34.48 1.52
2125 2630 1.206371 GCATCCTTCTGGCAGCATTTT 59.794 47.619 10.34 0.00 34.48 1.82
2126 2631 0.822164 GCATCCTTCTGGCAGCATTT 59.178 50.000 10.34 0.00 34.48 2.32
2127 2632 0.323999 TGCATCCTTCTGGCAGCATT 60.324 50.000 10.34 0.00 37.72 3.56
2128 2633 1.035932 GTGCATCCTTCTGGCAGCAT 61.036 55.000 10.34 0.00 41.96 3.79
2129 2634 1.676635 GTGCATCCTTCTGGCAGCA 60.677 57.895 10.34 0.00 38.38 4.41
2130 2635 1.035932 ATGTGCATCCTTCTGGCAGC 61.036 55.000 10.34 0.00 38.38 5.25
2131 2636 0.738975 CATGTGCATCCTTCTGGCAG 59.261 55.000 8.58 8.58 38.38 4.85
2132 2637 1.317431 GCATGTGCATCCTTCTGGCA 61.317 55.000 0.00 0.00 41.59 4.92
2133 2638 1.436336 GCATGTGCATCCTTCTGGC 59.564 57.895 0.00 0.00 41.59 4.85
2149 2654 9.850198 TTGGCAATATATATATATTCTGCTGCA 57.150 29.630 25.05 17.97 36.90 4.41
2190 2695 9.558648 GTCATGCAAACAAAATTTTCTTTTCTT 57.441 25.926 0.00 0.00 0.00 2.52
2191 2696 8.728833 TGTCATGCAAACAAAATTTTCTTTTCT 58.271 25.926 0.00 0.00 0.00 2.52
2192 2697 8.892887 TGTCATGCAAACAAAATTTTCTTTTC 57.107 26.923 0.00 0.00 0.00 2.29
2193 2698 9.688592 TTTGTCATGCAAACAAAATTTTCTTTT 57.311 22.222 21.67 1.12 42.09 2.27
2194 2699 9.688592 TTTTGTCATGCAAACAAAATTTTCTTT 57.311 22.222 26.80 0.00 46.28 2.52
2204 2709 9.979578 AGAAGTTATATTTTGTCATGCAAACAA 57.020 25.926 12.53 12.53 45.70 2.83
2209 2714 8.397906 GCTGTAGAAGTTATATTTTGTCATGCA 58.602 33.333 0.00 0.00 0.00 3.96
2210 2715 8.397906 TGCTGTAGAAGTTATATTTTGTCATGC 58.602 33.333 0.00 0.00 0.00 4.06
2211 2716 9.926751 CTGCTGTAGAAGTTATATTTTGTCATG 57.073 33.333 0.00 0.00 0.00 3.07
2212 2717 8.616076 GCTGCTGTAGAAGTTATATTTTGTCAT 58.384 33.333 0.00 0.00 0.00 3.06
2213 2718 7.065803 GGCTGCTGTAGAAGTTATATTTTGTCA 59.934 37.037 0.00 0.00 0.00 3.58
2214 2719 7.065803 TGGCTGCTGTAGAAGTTATATTTTGTC 59.934 37.037 0.00 0.00 0.00 3.18
2215 2720 6.884295 TGGCTGCTGTAGAAGTTATATTTTGT 59.116 34.615 0.00 0.00 0.00 2.83
2216 2721 7.320443 TGGCTGCTGTAGAAGTTATATTTTG 57.680 36.000 0.00 0.00 0.00 2.44
2217 2722 7.938140 TTGGCTGCTGTAGAAGTTATATTTT 57.062 32.000 0.00 0.00 0.00 1.82
2218 2723 7.938140 TTTGGCTGCTGTAGAAGTTATATTT 57.062 32.000 0.00 0.00 0.00 1.40
2219 2724 7.995488 AGATTTGGCTGCTGTAGAAGTTATATT 59.005 33.333 0.00 0.00 0.00 1.28
2220 2725 7.512992 AGATTTGGCTGCTGTAGAAGTTATAT 58.487 34.615 0.00 0.00 0.00 0.86
2221 2726 6.889198 AGATTTGGCTGCTGTAGAAGTTATA 58.111 36.000 0.00 0.00 0.00 0.98
2222 2727 5.749462 AGATTTGGCTGCTGTAGAAGTTAT 58.251 37.500 0.00 0.00 0.00 1.89
2223 2728 5.165961 AGATTTGGCTGCTGTAGAAGTTA 57.834 39.130 0.00 0.00 0.00 2.24
2224 2729 4.026356 AGATTTGGCTGCTGTAGAAGTT 57.974 40.909 0.00 0.00 0.00 2.66
2225 2730 3.710209 AGATTTGGCTGCTGTAGAAGT 57.290 42.857 0.00 0.00 0.00 3.01
2226 2731 6.500684 TTTAAGATTTGGCTGCTGTAGAAG 57.499 37.500 0.00 0.00 0.00 2.85
2227 2732 6.570378 GCTTTTAAGATTTGGCTGCTGTAGAA 60.570 38.462 0.00 0.00 0.00 2.10
2228 2733 5.106157 GCTTTTAAGATTTGGCTGCTGTAGA 60.106 40.000 0.00 0.00 0.00 2.59
2229 2734 5.098211 GCTTTTAAGATTTGGCTGCTGTAG 58.902 41.667 0.00 0.00 0.00 2.74
2230 2735 4.522405 TGCTTTTAAGATTTGGCTGCTGTA 59.478 37.500 0.00 0.00 0.00 2.74
2231 2736 3.321682 TGCTTTTAAGATTTGGCTGCTGT 59.678 39.130 0.00 0.00 0.00 4.40
2232 2737 3.916761 TGCTTTTAAGATTTGGCTGCTG 58.083 40.909 0.00 0.00 0.00 4.41
2233 2738 4.813750 ATGCTTTTAAGATTTGGCTGCT 57.186 36.364 0.00 0.00 0.00 4.24
2234 2739 6.332630 TCTTATGCTTTTAAGATTTGGCTGC 58.667 36.000 0.00 0.00 34.16 5.25
2235 2740 8.031277 AGTTCTTATGCTTTTAAGATTTGGCTG 58.969 33.333 5.55 0.00 37.87 4.85
2236 2741 8.127150 AGTTCTTATGCTTTTAAGATTTGGCT 57.873 30.769 5.55 0.00 37.87 4.75
2237 2742 9.855021 TTAGTTCTTATGCTTTTAAGATTTGGC 57.145 29.630 5.55 0.00 37.87 4.52
2244 2749 9.495754 GCTCACATTAGTTCTTATGCTTTTAAG 57.504 33.333 0.00 0.00 0.00 1.85
2245 2750 9.008965 TGCTCACATTAGTTCTTATGCTTTTAA 57.991 29.630 0.00 0.00 0.00 1.52
2246 2751 8.450964 GTGCTCACATTAGTTCTTATGCTTTTA 58.549 33.333 0.00 0.00 0.00 1.52
2247 2752 7.175641 AGTGCTCACATTAGTTCTTATGCTTTT 59.824 33.333 2.63 0.00 0.00 2.27
2248 2753 6.656693 AGTGCTCACATTAGTTCTTATGCTTT 59.343 34.615 2.63 0.00 0.00 3.51
2249 2754 6.176183 AGTGCTCACATTAGTTCTTATGCTT 58.824 36.000 2.63 0.00 0.00 3.91
2250 2755 5.738909 AGTGCTCACATTAGTTCTTATGCT 58.261 37.500 2.63 0.00 0.00 3.79
2251 2756 6.428385 AAGTGCTCACATTAGTTCTTATGC 57.572 37.500 2.63 0.00 0.00 3.14
2282 2787 7.281774 GGATATGAGACAACATCACAACTTGAT 59.718 37.037 0.00 0.00 46.75 2.57
2283 2788 6.595326 GGATATGAGACAACATCACAACTTGA 59.405 38.462 0.00 0.00 39.11 3.02
2284 2789 6.596888 AGGATATGAGACAACATCACAACTTG 59.403 38.462 0.00 0.00 31.16 3.16
2285 2790 6.715280 AGGATATGAGACAACATCACAACTT 58.285 36.000 0.00 0.00 31.16 2.66
2286 2791 6.155910 AGAGGATATGAGACAACATCACAACT 59.844 38.462 0.00 0.00 31.16 3.16
2287 2792 6.344500 AGAGGATATGAGACAACATCACAAC 58.656 40.000 0.00 0.00 31.16 3.32
2288 2793 6.550938 AGAGGATATGAGACAACATCACAA 57.449 37.500 0.00 0.00 31.16 3.33
2289 2794 6.239148 GCTAGAGGATATGAGACAACATCACA 60.239 42.308 0.00 0.00 32.01 3.58
2290 2795 6.155827 GCTAGAGGATATGAGACAACATCAC 58.844 44.000 0.00 0.00 0.00 3.06
2291 2796 5.048434 CGCTAGAGGATATGAGACAACATCA 60.048 44.000 0.00 0.00 0.00 3.07
2292 2797 5.182190 TCGCTAGAGGATATGAGACAACATC 59.818 44.000 0.00 0.00 0.00 3.06
2293 2798 5.073428 TCGCTAGAGGATATGAGACAACAT 58.927 41.667 0.00 0.00 0.00 2.71
2294 2799 4.461198 TCGCTAGAGGATATGAGACAACA 58.539 43.478 0.00 0.00 0.00 3.33
2295 2800 5.637006 ATCGCTAGAGGATATGAGACAAC 57.363 43.478 0.00 0.00 0.00 3.32
2296 2801 7.394641 ACATTATCGCTAGAGGATATGAGACAA 59.605 37.037 0.00 0.00 0.00 3.18
2297 2802 6.887002 ACATTATCGCTAGAGGATATGAGACA 59.113 38.462 0.00 0.00 0.00 3.41
2298 2803 7.192913 CACATTATCGCTAGAGGATATGAGAC 58.807 42.308 0.00 0.00 0.00 3.36
2299 2804 6.319911 CCACATTATCGCTAGAGGATATGAGA 59.680 42.308 0.00 0.00 0.00 3.27
2300 2805 6.096141 ACCACATTATCGCTAGAGGATATGAG 59.904 42.308 0.00 0.00 0.00 2.90
2301 2806 5.952347 ACCACATTATCGCTAGAGGATATGA 59.048 40.000 0.00 0.00 0.00 2.15
2302 2807 6.127619 TGACCACATTATCGCTAGAGGATATG 60.128 42.308 0.00 0.00 0.00 1.78
2303 2808 5.952347 TGACCACATTATCGCTAGAGGATAT 59.048 40.000 0.00 0.00 0.00 1.63
2304 2809 5.321927 TGACCACATTATCGCTAGAGGATA 58.678 41.667 0.00 0.00 0.00 2.59
2305 2810 4.152647 TGACCACATTATCGCTAGAGGAT 58.847 43.478 0.00 0.00 0.00 3.24
2306 2811 3.562182 TGACCACATTATCGCTAGAGGA 58.438 45.455 0.00 0.00 0.00 3.71
2307 2812 4.322080 TTGACCACATTATCGCTAGAGG 57.678 45.455 0.00 0.00 0.00 3.69
2308 2813 7.542890 AGATATTGACCACATTATCGCTAGAG 58.457 38.462 0.00 0.00 40.89 2.43
2309 2814 7.468141 AGATATTGACCACATTATCGCTAGA 57.532 36.000 0.00 0.00 40.89 2.43
2310 2815 9.077674 GTAAGATATTGACCACATTATCGCTAG 57.922 37.037 0.00 0.00 40.89 3.42
2311 2816 8.581578 TGTAAGATATTGACCACATTATCGCTA 58.418 33.333 0.00 0.00 40.89 4.26
2312 2817 7.441836 TGTAAGATATTGACCACATTATCGCT 58.558 34.615 0.00 0.00 40.89 4.93
2313 2818 7.652300 TGTAAGATATTGACCACATTATCGC 57.348 36.000 0.00 0.00 40.89 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.