Multiple sequence alignment - TraesCS5A01G121200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G121200 chr5A 100.000 3038 0 0 1 3038 261909824 261912861 0.000000e+00 5611
1 TraesCS5A01G121200 chr5A 92.517 294 18 4 2230 2522 604748502 604748212 4.680000e-113 418
2 TraesCS5A01G121200 chr5A 90.476 210 20 0 2829 3038 535518763 535518554 8.300000e-71 278
3 TraesCS5A01G121200 chr5A 89.372 207 22 0 2832 3038 631523644 631523438 8.350000e-66 261
4 TraesCS5A01G121200 chr5B 95.964 1536 46 4 700 2226 201286275 201287803 0.000000e+00 2479
5 TraesCS5A01G121200 chr5B 94.212 311 10 3 2522 2828 201287800 201288106 4.590000e-128 468
6 TraesCS5A01G121200 chr5D 94.193 1412 32 12 645 2047 159297911 159296541 0.000000e+00 2108
7 TraesCS5A01G121200 chr5D 91.385 650 49 4 1 649 159300991 159300348 0.000000e+00 883
8 TraesCS5A01G121200 chr5D 95.806 310 8 2 2522 2831 159296308 159296004 2.100000e-136 496
9 TraesCS5A01G121200 chr5D 91.205 307 25 2 2220 2526 58674054 58674358 1.680000e-112 416
10 TraesCS5A01G121200 chr5D 98.913 184 2 0 2043 2226 159296488 159296305 2.260000e-86 329
11 TraesCS5A01G121200 chr7A 91.776 304 21 3 2222 2524 185196677 185196977 1.300000e-113 420
12 TraesCS5A01G121200 chr4A 91.749 303 22 2 2222 2524 518118414 518118115 4.680000e-113 418
13 TraesCS5A01G121200 chr4A 87.619 210 26 0 2828 3037 467683851 467684060 8.410000e-61 244
14 TraesCS5A01G121200 chr4A 87.500 208 26 0 2830 3037 286747843 286747636 1.090000e-59 241
15 TraesCS5A01G121200 chr2A 91.503 306 22 4 2219 2524 71565119 71564818 4.680000e-113 418
16 TraesCS5A01G121200 chr2A 91.176 306 23 4 2219 2524 71550955 71550654 2.180000e-111 412
17 TraesCS5A01G121200 chr1A 91.946 298 23 1 2225 2522 399234908 399234612 1.680000e-112 416
18 TraesCS5A01G121200 chr1A 91.866 209 17 0 2830 3038 537981412 537981204 2.960000e-75 292
19 TraesCS5A01G121200 chr6D 91.391 302 25 1 2223 2524 308586219 308585919 2.180000e-111 412
20 TraesCS5A01G121200 chr3B 91.391 302 25 1 2223 2524 44639168 44638868 2.180000e-111 412
21 TraesCS5A01G121200 chr3A 90.952 210 19 0 2829 3038 670825919 670825710 1.780000e-72 283
22 TraesCS5A01G121200 chr3A 91.262 206 18 0 2833 3038 468323742 468323537 6.410000e-72 281
23 TraesCS5A01G121200 chr3A 90.187 214 21 0 2825 3038 721830423 721830210 2.310000e-71 279
24 TraesCS5A01G121200 chr6B 88.462 208 24 0 2830 3037 81010772 81010565 5.030000e-63 252
25 TraesCS5A01G121200 chr4B 78.261 253 32 8 23 255 419838532 419838283 1.140000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G121200 chr5A 261909824 261912861 3037 False 5611.0 5611 100.00000 1 3038 1 chr5A.!!$F1 3037
1 TraesCS5A01G121200 chr5B 201286275 201288106 1831 False 1473.5 2479 95.08800 700 2828 2 chr5B.!!$F1 2128
2 TraesCS5A01G121200 chr5D 159296004 159300991 4987 True 954.0 2108 95.07425 1 2831 4 chr5D.!!$R1 2830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 580 0.247460 TCCATGTGGAAGTGAGAGCG 59.753 55.0 0.00 0.0 42.18 5.03 F
1589 4033 0.035036 TGTGCATTTGCCAATGTGGG 59.965 50.0 11.75 0.0 41.84 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 4330 0.964860 TGGCCGTGCAACAATAGCAT 60.965 50.0 0.0 0.0 44.79 3.79 R
2600 5114 0.107268 GTTTGGGTACACCGACACCT 59.893 55.0 0.0 0.0 44.64 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.370126 GAATAACTATTGCGATGTGTTGTTATC 57.630 33.333 13.93 3.84 31.58 1.75
63 64 3.822735 CACACACAATTCCTCAACTCCAT 59.177 43.478 0.00 0.00 0.00 3.41
64 65 3.822735 ACACACAATTCCTCAACTCCATG 59.177 43.478 0.00 0.00 0.00 3.66
87 88 2.058125 TTGCCAGGTTTAGCCCACGA 62.058 55.000 0.00 0.00 38.26 4.35
95 96 2.614481 GGTTTAGCCCACGATCACTCAA 60.614 50.000 0.00 0.00 0.00 3.02
101 102 2.487762 GCCCACGATCACTCAAAAATGA 59.512 45.455 0.00 0.00 0.00 2.57
104 105 3.424829 CCACGATCACTCAAAAATGACCG 60.425 47.826 0.00 0.00 37.88 4.79
111 112 4.876679 TCACTCAAAAATGACCGTGTGTAA 59.123 37.500 0.00 0.00 0.00 2.41
132 133 9.406828 GTGTAATAGATTAGTTCATCGCATACA 57.593 33.333 0.00 0.00 0.00 2.29
137 138 9.710900 ATAGATTAGTTCATCGCATACATTTCA 57.289 29.630 0.00 0.00 0.00 2.69
138 139 8.613060 AGATTAGTTCATCGCATACATTTCAT 57.387 30.769 0.00 0.00 0.00 2.57
140 141 9.322776 GATTAGTTCATCGCATACATTTCATTC 57.677 33.333 0.00 0.00 0.00 2.67
141 142 6.932356 AGTTCATCGCATACATTTCATTCT 57.068 33.333 0.00 0.00 0.00 2.40
142 143 9.541143 TTAGTTCATCGCATACATTTCATTCTA 57.459 29.630 0.00 0.00 0.00 2.10
146 147 5.515548 TCGCATACATTTCATTCTATCGC 57.484 39.130 0.00 0.00 0.00 4.58
152 153 8.229811 GCATACATTTCATTCTATCGCATACAA 58.770 33.333 0.00 0.00 0.00 2.41
230 232 7.278875 TGGGCAAATTGTTCTATTTTTGAAGT 58.721 30.769 0.00 0.00 32.17 3.01
257 259 4.826733 TCTAATGCCACTTTCACACACAAT 59.173 37.500 0.00 0.00 0.00 2.71
273 275 2.095853 CACAATTAGTGGTCGGATGCAC 59.904 50.000 0.00 0.00 44.69 4.57
290 292 1.866063 GCACTAGTGGCATCTACTCGC 60.866 57.143 23.95 1.31 0.00 5.03
294 296 0.663688 AGTGGCATCTACTCGCGTAG 59.336 55.000 5.77 6.22 43.62 3.51
305 307 2.817901 ACTCGCGTAGAAACAACTGTT 58.182 42.857 5.77 0.00 40.50 3.16
343 345 9.295214 CATCTATATCATTGTATTCACTCGTCC 57.705 37.037 0.00 0.00 0.00 4.79
344 346 8.404107 TCTATATCATTGTATTCACTCGTCCA 57.596 34.615 0.00 0.00 0.00 4.02
378 380 7.363705 CCACCACCATGAATAATAAGAAGCAAA 60.364 37.037 0.00 0.00 0.00 3.68
394 396 7.112452 AGAAGCAAACCTTTGAAACTTGTAT 57.888 32.000 1.81 0.00 40.55 2.29
401 403 4.336993 ACCTTTGAAACTTGTATGTGCGAA 59.663 37.500 0.00 0.00 0.00 4.70
402 404 4.911610 CCTTTGAAACTTGTATGTGCGAAG 59.088 41.667 0.00 0.00 0.00 3.79
431 433 3.181455 CCCGATACTTCCAATCACATCCA 60.181 47.826 0.00 0.00 0.00 3.41
441 443 4.017591 TCCAATCACATCCAACACCCTATT 60.018 41.667 0.00 0.00 0.00 1.73
453 455 5.355596 CAACACCCTATTGAGAGATCTGAC 58.644 45.833 0.00 0.00 0.00 3.51
456 458 4.648762 CACCCTATTGAGAGATCTGACAGT 59.351 45.833 0.00 0.00 0.00 3.55
461 463 6.760770 CCTATTGAGAGATCTGACAGTTTTCC 59.239 42.308 0.00 0.00 0.00 3.13
470 472 1.137479 TGACAGTTTTCCGAACCGTCT 59.863 47.619 6.77 0.00 30.92 4.18
478 480 0.536687 TCCGAACCGTCTGACAGAGT 60.537 55.000 5.10 0.00 0.00 3.24
487 489 2.486203 CGTCTGACAGAGTTGAGTAGCT 59.514 50.000 5.10 0.00 0.00 3.32
489 491 4.201773 CGTCTGACAGAGTTGAGTAGCTAG 60.202 50.000 5.10 0.00 0.00 3.42
540 542 2.218603 CCACACACACACTAAGGGAAC 58.781 52.381 0.00 0.00 0.00 3.62
541 543 2.420827 CCACACACACACTAAGGGAACA 60.421 50.000 0.00 0.00 0.00 3.18
542 544 3.476552 CACACACACACTAAGGGAACAT 58.523 45.455 0.00 0.00 0.00 2.71
543 545 3.250762 CACACACACACTAAGGGAACATG 59.749 47.826 0.00 0.00 0.00 3.21
578 580 0.247460 TCCATGTGGAAGTGAGAGCG 59.753 55.000 0.00 0.00 42.18 5.03
605 607 2.026262 TGCAAGATTAGGGTTCCACCTC 60.026 50.000 0.00 0.00 42.09 3.85
636 638 2.267961 GGAGGGGCGTTCAACGAT 59.732 61.111 15.79 0.00 46.05 3.73
665 3108 2.542178 GACACACGCTTAACACACATGA 59.458 45.455 0.00 0.00 0.00 3.07
682 3125 3.195610 ACATGAATGAAGACACGGCTAGA 59.804 43.478 0.00 0.00 0.00 2.43
698 3141 6.309251 CACGGCTAGATAATTAAGAAGCTAGC 59.691 42.308 20.66 20.66 46.06 3.42
718 3161 8.997323 AGCTAGCAATAAACTATTCATCATCAC 58.003 33.333 18.83 0.00 0.00 3.06
775 3218 9.538508 AGCATGCTAAAGAAATGGAAAAATATC 57.461 29.630 21.21 0.00 0.00 1.63
891 3335 4.814771 GGTTATGTTATGTACACTGGCCTC 59.185 45.833 3.32 0.00 40.19 4.70
1169 3613 2.209315 CCCACCAGCCAACAAAGGG 61.209 63.158 0.00 0.00 0.00 3.95
1392 3836 0.528924 CCTCGTCGTCCATACAACCA 59.471 55.000 0.00 0.00 0.00 3.67
1445 3889 1.623811 GTCTCTGTTCCCAGCTGGTTA 59.376 52.381 30.63 16.19 38.66 2.85
1586 4030 3.592059 GATCTTGTGCATTTGCCAATGT 58.408 40.909 11.75 0.00 41.84 2.71
1587 4031 2.756829 TCTTGTGCATTTGCCAATGTG 58.243 42.857 11.75 0.00 41.84 3.21
1588 4032 1.801771 CTTGTGCATTTGCCAATGTGG 59.198 47.619 11.75 0.00 41.84 4.17
1589 4033 0.035036 TGTGCATTTGCCAATGTGGG 59.965 50.000 11.75 0.00 41.84 4.61
1590 4034 0.035176 GTGCATTTGCCAATGTGGGT 59.965 50.000 11.75 0.00 41.84 4.51
1591 4035 1.274728 GTGCATTTGCCAATGTGGGTA 59.725 47.619 11.75 0.00 41.84 3.69
1592 4036 1.274728 TGCATTTGCCAATGTGGGTAC 59.725 47.619 11.75 0.00 41.84 3.34
1706 4150 6.183360 GGTTAGGTAGGTTAGCTCCTAAACTC 60.183 46.154 20.15 11.57 39.48 3.01
1878 4330 9.613428 CATTAGATATTGACTTCCTTTGGTGTA 57.387 33.333 0.00 0.00 0.00 2.90
1966 4418 0.671781 CAAGCTGGGTCTTGAGGACG 60.672 60.000 0.00 0.00 44.61 4.79
2007 4459 1.339151 GCATCCGTCTCCTTTCCTTGT 60.339 52.381 0.00 0.00 0.00 3.16
2017 4469 6.872020 CGTCTCCTTTCCTTGTAATTTGTCTA 59.128 38.462 0.00 0.00 0.00 2.59
2222 4732 7.363793 CCATTAAAGGATCCGAAAGAAACCATT 60.364 37.037 5.98 0.00 0.00 3.16
2223 4733 7.533289 TTAAAGGATCCGAAAGAAACCATTT 57.467 32.000 5.98 0.00 0.00 2.32
2224 4734 8.638629 TTAAAGGATCCGAAAGAAACCATTTA 57.361 30.769 5.98 0.00 0.00 1.40
2225 4735 6.759497 AAGGATCCGAAAGAAACCATTTAG 57.241 37.500 5.98 0.00 0.00 1.85
2226 4736 5.193679 AGGATCCGAAAGAAACCATTTAGG 58.806 41.667 5.98 0.00 45.67 2.69
2227 4737 4.202020 GGATCCGAAAGAAACCATTTAGGC 60.202 45.833 0.00 0.00 43.14 3.93
2228 4738 4.028993 TCCGAAAGAAACCATTTAGGCT 57.971 40.909 0.00 0.00 43.14 4.58
2229 4739 4.403734 TCCGAAAGAAACCATTTAGGCTT 58.596 39.130 0.00 0.00 43.14 4.35
2230 4740 4.457949 TCCGAAAGAAACCATTTAGGCTTC 59.542 41.667 0.00 0.00 41.81 3.86
2231 4741 4.380550 CCGAAAGAAACCATTTAGGCTTCC 60.381 45.833 0.00 0.00 42.35 3.46
2232 4742 4.459337 CGAAAGAAACCATTTAGGCTTCCT 59.541 41.667 0.00 0.00 42.35 3.36
2233 4743 5.048013 CGAAAGAAACCATTTAGGCTTCCTT 60.048 40.000 0.00 0.00 42.35 3.36
2234 4744 6.516693 CGAAAGAAACCATTTAGGCTTCCTTT 60.517 38.462 0.00 0.00 42.35 3.11
2235 4745 5.728637 AGAAACCATTTAGGCTTCCTTTG 57.271 39.130 0.00 0.00 42.35 2.77
2236 4746 4.528206 AGAAACCATTTAGGCTTCCTTTGG 59.472 41.667 0.00 0.00 42.35 3.28
2237 4747 3.542969 ACCATTTAGGCTTCCTTTGGT 57.457 42.857 0.00 8.24 43.14 3.67
2238 4748 3.856900 ACCATTTAGGCTTCCTTTGGTT 58.143 40.909 0.00 0.00 43.14 3.67
2239 4749 4.231273 ACCATTTAGGCTTCCTTTGGTTT 58.769 39.130 0.00 0.00 43.14 3.27
2240 4750 4.040339 ACCATTTAGGCTTCCTTTGGTTTG 59.960 41.667 0.00 0.00 43.14 2.93
2241 4751 4.040339 CCATTTAGGCTTCCTTTGGTTTGT 59.960 41.667 0.00 0.00 34.61 2.83
2242 4752 5.245075 CCATTTAGGCTTCCTTTGGTTTGTA 59.755 40.000 0.00 0.00 34.61 2.41
2243 4753 6.389906 CATTTAGGCTTCCTTTGGTTTGTAG 58.610 40.000 0.00 0.00 34.61 2.74
2244 4754 2.876581 AGGCTTCCTTTGGTTTGTAGG 58.123 47.619 0.00 0.00 0.00 3.18
2245 4755 2.445525 AGGCTTCCTTTGGTTTGTAGGA 59.554 45.455 0.00 0.00 36.31 2.94
2246 4756 3.117284 AGGCTTCCTTTGGTTTGTAGGAA 60.117 43.478 0.00 0.00 43.81 3.36
2247 4757 3.832490 GGCTTCCTTTGGTTTGTAGGAAT 59.168 43.478 0.00 0.00 44.65 3.01
2248 4758 4.283467 GGCTTCCTTTGGTTTGTAGGAATT 59.717 41.667 0.00 0.00 44.65 2.17
2249 4759 5.470368 GCTTCCTTTGGTTTGTAGGAATTC 58.530 41.667 0.00 0.00 44.65 2.17
2250 4760 5.566826 GCTTCCTTTGGTTTGTAGGAATTCC 60.567 44.000 17.31 17.31 44.65 3.01
2251 4761 5.068215 TCCTTTGGTTTGTAGGAATTCCA 57.932 39.130 26.22 9.69 35.20 3.53
2252 4762 5.650283 TCCTTTGGTTTGTAGGAATTCCAT 58.350 37.500 26.22 13.49 35.20 3.41
2253 4763 6.795590 TCCTTTGGTTTGTAGGAATTCCATA 58.204 36.000 26.22 12.52 35.20 2.74
2254 4764 6.889722 TCCTTTGGTTTGTAGGAATTCCATAG 59.110 38.462 26.22 7.92 35.20 2.23
2255 4765 6.096846 CCTTTGGTTTGTAGGAATTCCATAGG 59.903 42.308 26.22 12.71 37.64 2.57
2256 4766 6.395780 TTGGTTTGTAGGAATTCCATAGGA 57.604 37.500 26.22 6.53 38.89 2.94
2257 4767 6.590656 TGGTTTGTAGGAATTCCATAGGAT 57.409 37.500 26.22 7.07 38.89 3.24
2258 4768 6.980577 TGGTTTGTAGGAATTCCATAGGATT 58.019 36.000 26.22 6.33 38.89 3.01
2259 4769 7.418378 TGGTTTGTAGGAATTCCATAGGATTT 58.582 34.615 26.22 5.57 38.89 2.17
2260 4770 7.898636 TGGTTTGTAGGAATTCCATAGGATTTT 59.101 33.333 26.22 4.84 38.89 1.82
2261 4771 8.758829 GGTTTGTAGGAATTCCATAGGATTTTT 58.241 33.333 26.22 4.09 38.89 1.94
2269 4779 9.807921 GGAATTCCATAGGATTTTTATAGGACA 57.192 33.333 20.04 0.00 35.64 4.02
2271 4781 9.813826 AATTCCATAGGATTTTTATAGGACAGG 57.186 33.333 0.00 0.00 0.00 4.00
2272 4782 8.575736 TTCCATAGGATTTTTATAGGACAGGA 57.424 34.615 0.00 0.00 0.00 3.86
2273 4783 8.757307 TCCATAGGATTTTTATAGGACAGGAT 57.243 34.615 0.00 0.00 0.00 3.24
2274 4784 9.182642 TCCATAGGATTTTTATAGGACAGGATT 57.817 33.333 0.00 0.00 0.00 3.01
2275 4785 9.813826 CCATAGGATTTTTATAGGACAGGATTT 57.186 33.333 0.00 0.00 0.00 2.17
2303 4813 8.579850 AAAGAAAAATTTTCTTTGAAGCCCTT 57.420 26.923 32.92 14.94 44.39 3.95
2304 4814 8.579850 AAGAAAAATTTTCTTTGAAGCCCTTT 57.420 26.923 23.50 2.21 35.39 3.11
2305 4815 7.988737 AGAAAAATTTTCTTTGAAGCCCTTTG 58.011 30.769 14.63 0.00 0.00 2.77
2306 4816 7.828717 AGAAAAATTTTCTTTGAAGCCCTTTGA 59.171 29.630 14.63 0.00 0.00 2.69
2307 4817 8.523915 AAAAATTTTCTTTGAAGCCCTTTGAT 57.476 26.923 3.41 0.00 0.00 2.57
2308 4818 8.523915 AAAATTTTCTTTGAAGCCCTTTGATT 57.476 26.923 0.00 0.00 0.00 2.57
2309 4819 8.523915 AAATTTTCTTTGAAGCCCTTTGATTT 57.476 26.923 0.00 0.00 0.00 2.17
2310 4820 6.923928 TTTTCTTTGAAGCCCTTTGATTTG 57.076 33.333 0.00 0.00 0.00 2.32
2311 4821 5.612725 TTCTTTGAAGCCCTTTGATTTGT 57.387 34.783 0.00 0.00 0.00 2.83
2312 4822 6.723298 TTCTTTGAAGCCCTTTGATTTGTA 57.277 33.333 0.00 0.00 0.00 2.41
2313 4823 6.331369 TCTTTGAAGCCCTTTGATTTGTAG 57.669 37.500 0.00 0.00 0.00 2.74
2314 4824 5.833131 TCTTTGAAGCCCTTTGATTTGTAGT 59.167 36.000 0.00 0.00 0.00 2.73
2315 4825 7.001674 TCTTTGAAGCCCTTTGATTTGTAGTA 58.998 34.615 0.00 0.00 0.00 1.82
2316 4826 7.504238 TCTTTGAAGCCCTTTGATTTGTAGTAA 59.496 33.333 0.00 0.00 0.00 2.24
2317 4827 7.775053 TTGAAGCCCTTTGATTTGTAGTAAT 57.225 32.000 0.00 0.00 0.00 1.89
2318 4828 7.156876 TGAAGCCCTTTGATTTGTAGTAATG 57.843 36.000 0.00 0.00 0.00 1.90
2319 4829 6.152661 TGAAGCCCTTTGATTTGTAGTAATGG 59.847 38.462 0.00 0.00 0.00 3.16
2320 4830 5.826643 AGCCCTTTGATTTGTAGTAATGGA 58.173 37.500 0.00 0.00 0.00 3.41
2321 4831 6.435164 AGCCCTTTGATTTGTAGTAATGGAT 58.565 36.000 0.00 0.00 0.00 3.41
2322 4832 6.897413 AGCCCTTTGATTTGTAGTAATGGATT 59.103 34.615 0.00 0.00 0.00 3.01
2323 4833 7.068716 AGCCCTTTGATTTGTAGTAATGGATTC 59.931 37.037 0.00 0.00 0.00 2.52
2324 4834 7.684428 GCCCTTTGATTTGTAGTAATGGATTCC 60.684 40.741 0.00 0.00 0.00 3.01
2325 4835 7.561356 CCCTTTGATTTGTAGTAATGGATTCCT 59.439 37.037 3.95 0.00 0.00 3.36
2326 4836 9.627123 CCTTTGATTTGTAGTAATGGATTCCTA 57.373 33.333 3.95 0.00 0.00 2.94
2330 4840 9.793259 TGATTTGTAGTAATGGATTCCTATTCC 57.207 33.333 3.95 0.00 0.00 3.01
2335 4845 9.615660 TGTAGTAATGGATTCCTATTCCTATGT 57.384 33.333 3.95 0.00 34.17 2.29
2338 4848 9.273137 AGTAATGGATTCCTATTCCTATGTAGG 57.727 37.037 3.95 0.00 45.02 3.18
2429 4939 8.929260 TTATCCTATGCATCAAATGACATCTT 57.071 30.769 0.19 0.00 32.25 2.40
2430 4940 7.834881 ATCCTATGCATCAAATGACATCTTT 57.165 32.000 0.19 0.00 32.25 2.52
2431 4941 7.649533 TCCTATGCATCAAATGACATCTTTT 57.350 32.000 0.19 0.00 32.25 2.27
2432 4942 8.070034 TCCTATGCATCAAATGACATCTTTTT 57.930 30.769 0.19 0.00 32.25 1.94
2457 4967 9.842775 TTTCTCTATAGAAATTGAGATGCATGT 57.157 29.630 2.46 0.00 44.85 3.21
2458 4968 9.486497 TTCTCTATAGAAATTGAGATGCATGTC 57.514 33.333 16.63 16.63 41.55 3.06
2459 4969 8.645110 TCTCTATAGAAATTGAGATGCATGTCA 58.355 33.333 21.70 21.70 38.53 3.58
2460 4970 9.438228 CTCTATAGAAATTGAGATGCATGTCAT 57.562 33.333 25.41 12.35 37.20 3.06
2473 4983 6.862711 ATGCATGTCATCTCACTTTCTATG 57.137 37.500 0.00 0.00 0.00 2.23
2474 4984 5.981174 TGCATGTCATCTCACTTTCTATGA 58.019 37.500 0.00 0.00 0.00 2.15
2475 4985 6.589135 TGCATGTCATCTCACTTTCTATGAT 58.411 36.000 0.00 0.00 31.49 2.45
2476 4986 7.052248 TGCATGTCATCTCACTTTCTATGATT 58.948 34.615 0.00 0.00 31.49 2.57
2477 4987 7.555195 TGCATGTCATCTCACTTTCTATGATTT 59.445 33.333 0.00 0.00 31.49 2.17
2478 4988 8.404000 GCATGTCATCTCACTTTCTATGATTTT 58.596 33.333 0.00 0.00 31.49 1.82
2479 4989 9.932699 CATGTCATCTCACTTTCTATGATTTTC 57.067 33.333 0.00 0.00 31.49 2.29
2480 4990 8.498054 TGTCATCTCACTTTCTATGATTTTCC 57.502 34.615 0.00 0.00 31.49 3.13
2481 4991 8.324306 TGTCATCTCACTTTCTATGATTTTCCT 58.676 33.333 0.00 0.00 31.49 3.36
2482 4992 9.823647 GTCATCTCACTTTCTATGATTTTCCTA 57.176 33.333 0.00 0.00 31.49 2.94
2486 4996 9.838339 TCTCACTTTCTATGATTTTCCTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
2487 4997 9.844257 CTCACTTTCTATGATTTTCCTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
2518 5028 9.717942 CATTTCTATCCTATGAACTAAAGGAGG 57.282 37.037 0.00 0.00 42.53 4.30
2519 5029 6.919775 TCTATCCTATGAACTAAAGGAGGC 57.080 41.667 0.00 0.00 42.53 4.70
2520 5030 4.984146 ATCCTATGAACTAAAGGAGGCC 57.016 45.455 0.00 0.00 42.53 5.19
2594 5108 4.632153 GAGTGTACCACATTCAAGTGACT 58.368 43.478 0.00 0.00 42.05 3.41
2600 5114 4.269183 ACCACATTCAAGTGACTGAAACA 58.731 39.130 5.74 0.00 42.05 2.83
2613 5127 2.132762 CTGAAACAGGTGTCGGTGTAC 58.867 52.381 0.00 0.00 0.00 2.90
2673 5187 7.370383 TGCACTGGATATTTTGTCTCTTTTTC 58.630 34.615 0.00 0.00 0.00 2.29
2811 5325 3.057245 GCATCCATGTCGCTACAGATCTA 60.057 47.826 0.00 0.00 39.49 1.98
2828 5342 8.969260 ACAGATCTAAATCTTGCATGTTATGA 57.031 30.769 0.00 0.00 40.38 2.15
2834 5348 9.494271 TCTAAATCTTGCATGTTATGATACTCC 57.506 33.333 0.00 0.00 0.00 3.85
2835 5349 7.516198 AAATCTTGCATGTTATGATACTCCC 57.484 36.000 0.00 0.00 0.00 4.30
2836 5350 5.894298 TCTTGCATGTTATGATACTCCCT 57.106 39.130 0.00 0.00 0.00 4.20
2837 5351 5.858381 TCTTGCATGTTATGATACTCCCTC 58.142 41.667 0.00 0.00 0.00 4.30
2838 5352 4.623932 TGCATGTTATGATACTCCCTCC 57.376 45.455 0.00 0.00 0.00 4.30
2839 5353 3.006859 TGCATGTTATGATACTCCCTCCG 59.993 47.826 0.00 0.00 0.00 4.63
2840 5354 3.617531 GCATGTTATGATACTCCCTCCGG 60.618 52.174 0.00 0.00 0.00 5.14
2841 5355 3.323774 TGTTATGATACTCCCTCCGGT 57.676 47.619 0.00 0.00 0.00 5.28
2842 5356 3.228453 TGTTATGATACTCCCTCCGGTC 58.772 50.000 0.00 0.00 0.00 4.79
2843 5357 2.561858 GTTATGATACTCCCTCCGGTCC 59.438 54.545 0.00 0.00 0.00 4.46
2844 5358 0.861155 ATGATACTCCCTCCGGTCCT 59.139 55.000 0.00 0.00 0.00 3.85
2845 5359 0.635009 TGATACTCCCTCCGGTCCTT 59.365 55.000 0.00 0.00 0.00 3.36
2846 5360 1.007963 TGATACTCCCTCCGGTCCTTT 59.992 52.381 0.00 0.00 0.00 3.11
2847 5361 2.117051 GATACTCCCTCCGGTCCTTTT 58.883 52.381 0.00 0.00 0.00 2.27
2848 5362 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
2849 5363 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2850 5364 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
2851 5365 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
2852 5366 2.305052 CTCCCTCCGGTCCTTTTTACTT 59.695 50.000 0.00 0.00 0.00 2.24
2853 5367 2.303890 TCCCTCCGGTCCTTTTTACTTC 59.696 50.000 0.00 0.00 0.00 3.01
2854 5368 2.344025 CCTCCGGTCCTTTTTACTTCG 58.656 52.381 0.00 0.00 0.00 3.79
2855 5369 1.730612 CTCCGGTCCTTTTTACTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
2856 5370 0.441145 CCGGTCCTTTTTACTTCGCG 59.559 55.000 0.00 0.00 0.00 5.87
2857 5371 1.142474 CGGTCCTTTTTACTTCGCGT 58.858 50.000 5.77 0.00 0.00 6.01
2858 5372 2.327568 CGGTCCTTTTTACTTCGCGTA 58.672 47.619 5.77 0.00 0.00 4.42
2859 5373 2.925563 CGGTCCTTTTTACTTCGCGTAT 59.074 45.455 5.77 0.00 0.00 3.06
2860 5374 3.368843 CGGTCCTTTTTACTTCGCGTATT 59.631 43.478 5.77 0.00 0.00 1.89
2861 5375 4.562394 CGGTCCTTTTTACTTCGCGTATTA 59.438 41.667 5.77 0.00 0.00 0.98
2862 5376 5.062058 CGGTCCTTTTTACTTCGCGTATTAA 59.938 40.000 5.77 0.00 0.00 1.40
2863 5377 6.400940 CGGTCCTTTTTACTTCGCGTATTAAA 60.401 38.462 5.77 5.01 0.00 1.52
2864 5378 7.297391 GGTCCTTTTTACTTCGCGTATTAAAA 58.703 34.615 14.11 14.11 0.00 1.52
2865 5379 7.964559 GGTCCTTTTTACTTCGCGTATTAAAAT 59.035 33.333 17.27 0.00 0.00 1.82
2866 5380 9.333497 GTCCTTTTTACTTCGCGTATTAAAATT 57.667 29.630 17.27 0.00 0.00 1.82
2867 5381 9.332301 TCCTTTTTACTTCGCGTATTAAAATTG 57.668 29.630 17.27 13.79 0.00 2.32
2868 5382 9.120422 CCTTTTTACTTCGCGTATTAAAATTGT 57.880 29.630 17.27 0.00 0.00 2.71
2875 5389 8.662141 ACTTCGCGTATTAAAATTGTATCAAGT 58.338 29.630 5.77 0.00 0.00 3.16
2876 5390 9.144085 CTTCGCGTATTAAAATTGTATCAAGTC 57.856 33.333 5.77 0.00 0.00 3.01
2877 5391 8.187354 TCGCGTATTAAAATTGTATCAAGTCA 57.813 30.769 5.77 0.00 0.00 3.41
2878 5392 8.657729 TCGCGTATTAAAATTGTATCAAGTCAA 58.342 29.630 5.77 0.00 0.00 3.18
2879 5393 9.268255 CGCGTATTAAAATTGTATCAAGTCAAA 57.732 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.968626 GTGATGATAACAACACATCGCAA 58.031 39.130 8.27 0.00 45.07 4.85
33 34 6.741992 TGAGGAATTGTGTGTGATGATAAC 57.258 37.500 0.00 0.00 0.00 1.89
38 39 4.083110 GGAGTTGAGGAATTGTGTGTGATG 60.083 45.833 0.00 0.00 0.00 3.07
63 64 1.657556 GCTAAACCTGGCAAACGCA 59.342 52.632 0.00 0.00 0.00 5.24
64 65 1.080772 GGCTAAACCTGGCAAACGC 60.081 57.895 0.00 0.00 34.51 4.84
87 88 3.882888 ACACACGGTCATTTTTGAGTGAT 59.117 39.130 0.00 0.00 34.16 3.06
95 96 9.444600 AACTAATCTATTACACACGGTCATTTT 57.555 29.630 0.00 0.00 0.00 1.82
101 102 6.916387 CGATGAACTAATCTATTACACACGGT 59.084 38.462 0.00 0.00 0.00 4.83
104 105 7.694388 TGCGATGAACTAATCTATTACACAC 57.306 36.000 0.00 0.00 0.00 3.82
111 112 9.710900 TGAAATGTATGCGATGAACTAATCTAT 57.289 29.630 0.00 0.00 0.00 1.98
168 169 2.024176 ATTGTAGGTCCATCACGCAC 57.976 50.000 0.00 0.00 0.00 5.34
206 207 7.226523 ACACTTCAAAAATAGAACAATTTGCCC 59.773 33.333 0.00 0.00 33.81 5.36
230 232 4.065088 GTGTGAAAGTGGCATTAGAGACA 58.935 43.478 0.00 0.00 0.00 3.41
257 259 2.165641 CACTAGTGCATCCGACCACTAA 59.834 50.000 10.54 0.00 42.20 2.24
264 266 2.211375 ATGCCACTAGTGCATCCGA 58.789 52.632 17.86 0.00 46.04 4.55
273 275 0.663688 ACGCGAGTAGATGCCACTAG 59.336 55.000 15.93 0.00 46.88 2.57
290 292 8.873830 AGATTGATATCAACAGTTGTTTCTACG 58.126 33.333 20.19 0.00 38.86 3.51
294 296 9.713740 GATGAGATTGATATCAACAGTTGTTTC 57.286 33.333 20.19 11.10 38.86 2.78
337 339 2.884894 GGTGGTATACCTTGGACGAG 57.115 55.000 22.41 0.00 46.51 4.18
378 380 3.880490 TCGCACATACAAGTTTCAAAGGT 59.120 39.130 0.00 0.00 0.00 3.50
390 392 2.125310 CGGGGCTTCGCACATACA 60.125 61.111 0.00 0.00 30.93 2.29
407 409 3.536956 TGTGATTGGAAGTATCGGGAC 57.463 47.619 0.00 0.00 0.00 4.46
408 410 3.071023 GGATGTGATTGGAAGTATCGGGA 59.929 47.826 0.00 0.00 0.00 5.14
411 413 4.875536 TGTTGGATGTGATTGGAAGTATCG 59.124 41.667 0.00 0.00 0.00 2.92
413 415 4.949856 GGTGTTGGATGTGATTGGAAGTAT 59.050 41.667 0.00 0.00 0.00 2.12
431 433 5.026121 TGTCAGATCTCTCAATAGGGTGTT 58.974 41.667 0.00 0.00 0.00 3.32
441 443 3.826729 TCGGAAAACTGTCAGATCTCTCA 59.173 43.478 6.91 0.00 0.00 3.27
453 455 1.525619 GTCAGACGGTTCGGAAAACTG 59.474 52.381 0.00 0.83 0.00 3.16
456 458 1.409790 TCTGTCAGACGGTTCGGAAAA 59.590 47.619 9.33 0.00 0.00 2.29
461 463 1.001706 TCAACTCTGTCAGACGGTTCG 60.002 52.381 9.33 2.51 0.00 3.95
470 472 4.697828 CACTCTAGCTACTCAACTCTGTCA 59.302 45.833 0.00 0.00 0.00 3.58
478 480 1.743958 GTCGGCACTCTAGCTACTCAA 59.256 52.381 0.00 0.00 34.17 3.02
578 580 2.789409 ACCCTAATCTTGCAGGTGAC 57.211 50.000 0.00 0.00 0.00 3.67
605 607 2.422093 GCCCCTCCCTATTTTCACTCTG 60.422 54.545 0.00 0.00 0.00 3.35
636 638 2.798283 GTTAAGCGTGTGTCTTGCTACA 59.202 45.455 0.00 0.00 38.17 2.74
665 3108 8.421784 TCTTAATTATCTAGCCGTGTCTTCATT 58.578 33.333 0.00 0.00 0.00 2.57
698 3141 6.852853 GTGGCGTGATGATGAATAGTTTATTG 59.147 38.462 0.00 0.00 0.00 1.90
775 3218 3.637229 AGATGGATGTACTACAAGACGGG 59.363 47.826 0.00 0.00 0.00 5.28
891 3335 2.416547 CTGCGTTTCATGTAGGTTGAGG 59.583 50.000 0.00 0.00 0.00 3.86
1322 3766 2.201885 CGCGCAAAGACGACGAAC 60.202 61.111 8.75 0.00 35.58 3.95
1586 4030 2.043389 TGAGCTAACTACCCAGTACCCA 59.957 50.000 0.00 0.00 33.48 4.51
1587 4031 2.743553 TGAGCTAACTACCCAGTACCC 58.256 52.381 0.00 0.00 33.48 3.69
1588 4032 3.705072 ACATGAGCTAACTACCCAGTACC 59.295 47.826 0.00 0.00 33.48 3.34
1589 4033 5.593502 AGTACATGAGCTAACTACCCAGTAC 59.406 44.000 0.00 0.00 33.48 2.73
1590 4034 5.593095 CAGTACATGAGCTAACTACCCAGTA 59.407 44.000 0.00 0.00 33.48 2.74
1591 4035 4.402793 CAGTACATGAGCTAACTACCCAGT 59.597 45.833 0.00 0.00 36.19 4.00
1592 4036 4.202161 CCAGTACATGAGCTAACTACCCAG 60.202 50.000 0.00 0.00 0.00 4.45
1878 4330 0.964860 TGGCCGTGCAACAATAGCAT 60.965 50.000 0.00 0.00 44.79 3.79
1966 4418 5.491070 TGCTATATGGCATACCTGTGAATC 58.509 41.667 10.04 0.00 37.29 2.52
2007 4459 8.342634 GCACAAAGAAAGAGTGTAGACAAATTA 58.657 33.333 0.00 0.00 35.75 1.40
2017 4469 8.000780 AGAAATTAAGCACAAAGAAAGAGTGT 57.999 30.769 0.00 0.00 35.75 3.55
2222 4732 4.105057 TCCTACAAACCAAAGGAAGCCTAA 59.895 41.667 0.00 0.00 36.47 2.69
2223 4733 3.653836 TCCTACAAACCAAAGGAAGCCTA 59.346 43.478 0.00 0.00 36.47 3.93
2224 4734 2.445525 TCCTACAAACCAAAGGAAGCCT 59.554 45.455 0.00 0.00 36.47 4.58
2225 4735 2.871453 TCCTACAAACCAAAGGAAGCC 58.129 47.619 0.00 0.00 36.47 4.35
2229 4739 5.068215 TGGAATTCCTACAAACCAAAGGA 57.932 39.130 24.73 0.00 37.64 3.36
2230 4740 6.096846 CCTATGGAATTCCTACAAACCAAAGG 59.903 42.308 24.73 11.69 36.82 3.11
2231 4741 6.889722 TCCTATGGAATTCCTACAAACCAAAG 59.110 38.462 24.73 7.35 36.82 2.77
2232 4742 6.795590 TCCTATGGAATTCCTACAAACCAAA 58.204 36.000 24.73 1.08 36.82 3.28
2233 4743 6.395780 TCCTATGGAATTCCTACAAACCAA 57.604 37.500 24.73 1.85 36.82 3.67
2234 4744 6.590656 ATCCTATGGAATTCCTACAAACCA 57.409 37.500 24.73 3.31 34.34 3.67
2235 4745 7.898014 AAATCCTATGGAATTCCTACAAACC 57.102 36.000 24.73 0.00 34.34 3.27
2243 4753 9.807921 TGTCCTATAAAAATCCTATGGAATTCC 57.192 33.333 18.17 18.17 34.34 3.01
2245 4755 9.813826 CCTGTCCTATAAAAATCCTATGGAATT 57.186 33.333 0.00 0.00 34.34 2.17
2246 4756 9.182642 TCCTGTCCTATAAAAATCCTATGGAAT 57.817 33.333 0.00 0.00 34.34 3.01
2247 4757 8.575736 TCCTGTCCTATAAAAATCCTATGGAA 57.424 34.615 0.00 0.00 34.34 3.53
2248 4758 8.757307 ATCCTGTCCTATAAAAATCCTATGGA 57.243 34.615 0.00 0.00 35.55 3.41
2249 4759 9.813826 AAATCCTGTCCTATAAAAATCCTATGG 57.186 33.333 0.00 0.00 0.00 2.74
2278 4788 8.579850 AAGGGCTTCAAAGAAAATTTTTCTTT 57.420 26.923 30.62 30.62 46.29 2.52
2279 4789 8.461222 CAAAGGGCTTCAAAGAAAATTTTTCTT 58.539 29.630 24.69 24.69 40.20 2.52
2280 4790 7.828717 TCAAAGGGCTTCAAAGAAAATTTTTCT 59.171 29.630 16.82 16.82 0.00 2.52
2281 4791 7.984391 TCAAAGGGCTTCAAAGAAAATTTTTC 58.016 30.769 12.94 12.94 0.00 2.29
2282 4792 7.936496 TCAAAGGGCTTCAAAGAAAATTTTT 57.064 28.000 4.63 0.00 0.00 1.94
2283 4793 8.523915 AATCAAAGGGCTTCAAAGAAAATTTT 57.476 26.923 2.28 2.28 0.00 1.82
2284 4794 8.407832 CAAATCAAAGGGCTTCAAAGAAAATTT 58.592 29.630 0.00 0.00 0.00 1.82
2285 4795 7.557358 ACAAATCAAAGGGCTTCAAAGAAAATT 59.443 29.630 0.00 0.00 0.00 1.82
2286 4796 7.056006 ACAAATCAAAGGGCTTCAAAGAAAAT 58.944 30.769 0.00 0.00 0.00 1.82
2287 4797 6.413892 ACAAATCAAAGGGCTTCAAAGAAAA 58.586 32.000 0.00 0.00 0.00 2.29
2288 4798 5.988287 ACAAATCAAAGGGCTTCAAAGAAA 58.012 33.333 0.00 0.00 0.00 2.52
2289 4799 5.612725 ACAAATCAAAGGGCTTCAAAGAA 57.387 34.783 0.00 0.00 0.00 2.52
2290 4800 5.833131 ACTACAAATCAAAGGGCTTCAAAGA 59.167 36.000 0.00 0.00 0.00 2.52
2291 4801 6.089249 ACTACAAATCAAAGGGCTTCAAAG 57.911 37.500 0.00 0.00 0.00 2.77
2292 4802 7.589958 TTACTACAAATCAAAGGGCTTCAAA 57.410 32.000 0.00 0.00 0.00 2.69
2293 4803 7.309744 CCATTACTACAAATCAAAGGGCTTCAA 60.310 37.037 0.00 0.00 0.00 2.69
2294 4804 6.152661 CCATTACTACAAATCAAAGGGCTTCA 59.847 38.462 0.00 0.00 0.00 3.02
2295 4805 6.377146 TCCATTACTACAAATCAAAGGGCTTC 59.623 38.462 0.00 0.00 0.00 3.86
2296 4806 6.252995 TCCATTACTACAAATCAAAGGGCTT 58.747 36.000 0.00 0.00 0.00 4.35
2297 4807 5.826643 TCCATTACTACAAATCAAAGGGCT 58.173 37.500 0.00 0.00 0.00 5.19
2298 4808 6.715347 ATCCATTACTACAAATCAAAGGGC 57.285 37.500 0.00 0.00 0.00 5.19
2299 4809 7.561356 AGGAATCCATTACTACAAATCAAAGGG 59.439 37.037 0.61 0.00 0.00 3.95
2300 4810 8.525290 AGGAATCCATTACTACAAATCAAAGG 57.475 34.615 0.61 0.00 0.00 3.11
2304 4814 9.793259 GGAATAGGAATCCATTACTACAAATCA 57.207 33.333 0.61 0.00 36.11 2.57
2309 4819 9.615660 ACATAGGAATAGGAATCCATTACTACA 57.384 33.333 14.42 2.06 36.11 2.74
2312 4822 9.273137 CCTACATAGGAATAGGAATCCATTACT 57.727 37.037 0.61 8.07 46.63 2.24
2403 4913 9.529823 AAGATGTCATTTGATGCATAGGATAAT 57.470 29.630 0.00 0.00 30.80 1.28
2404 4914 8.929260 AAGATGTCATTTGATGCATAGGATAA 57.071 30.769 0.00 0.00 30.80 1.75
2405 4915 8.929260 AAAGATGTCATTTGATGCATAGGATA 57.071 30.769 0.00 0.00 30.80 2.59
2406 4916 7.834881 AAAGATGTCATTTGATGCATAGGAT 57.165 32.000 0.00 0.00 30.80 3.24
2407 4917 7.649533 AAAAGATGTCATTTGATGCATAGGA 57.350 32.000 0.00 0.00 30.80 2.94
2432 4942 9.486497 GACATGCATCTCAATTTCTATAGAGAA 57.514 33.333 0.00 0.00 40.19 2.87
2433 4943 8.645110 TGACATGCATCTCAATTTCTATAGAGA 58.355 33.333 1.73 0.00 40.96 3.10
2434 4944 8.828688 TGACATGCATCTCAATTTCTATAGAG 57.171 34.615 1.73 0.00 0.00 2.43
2450 4960 6.589135 TCATAGAAAGTGAGATGACATGCAT 58.411 36.000 0.00 0.00 40.77 3.96
2451 4961 5.981174 TCATAGAAAGTGAGATGACATGCA 58.019 37.500 0.00 0.00 0.00 3.96
2452 4962 7.493743 AATCATAGAAAGTGAGATGACATGC 57.506 36.000 0.00 0.00 31.41 4.06
2453 4963 9.932699 GAAAATCATAGAAAGTGAGATGACATG 57.067 33.333 0.00 0.00 31.41 3.21
2454 4964 9.118300 GGAAAATCATAGAAAGTGAGATGACAT 57.882 33.333 0.00 0.00 31.41 3.06
2455 4965 8.324306 AGGAAAATCATAGAAAGTGAGATGACA 58.676 33.333 0.00 0.00 31.41 3.58
2456 4966 8.729805 AGGAAAATCATAGAAAGTGAGATGAC 57.270 34.615 0.00 0.00 31.41 3.06
2460 4970 9.838339 GGAATAGGAAAATCATAGAAAGTGAGA 57.162 33.333 0.00 0.00 0.00 3.27
2461 4971 9.844257 AGGAATAGGAAAATCATAGAAAGTGAG 57.156 33.333 0.00 0.00 0.00 3.51
2492 5002 9.717942 CCTCCTTTAGTTCATAGGATAGAAATG 57.282 37.037 0.00 0.00 37.44 2.32
2493 5003 8.379331 GCCTCCTTTAGTTCATAGGATAGAAAT 58.621 37.037 0.00 0.00 37.44 2.17
2494 5004 7.202102 GGCCTCCTTTAGTTCATAGGATAGAAA 60.202 40.741 0.00 0.00 37.44 2.52
2495 5005 6.270231 GGCCTCCTTTAGTTCATAGGATAGAA 59.730 42.308 0.00 0.00 37.44 2.10
2496 5006 5.780793 GGCCTCCTTTAGTTCATAGGATAGA 59.219 44.000 0.00 0.00 37.44 1.98
2497 5007 5.782845 AGGCCTCCTTTAGTTCATAGGATAG 59.217 44.000 0.00 0.00 37.44 2.08
2498 5008 5.727630 AGGCCTCCTTTAGTTCATAGGATA 58.272 41.667 0.00 0.00 37.44 2.59
2499 5009 4.571951 AGGCCTCCTTTAGTTCATAGGAT 58.428 43.478 0.00 0.00 37.44 3.24
2500 5010 4.008916 AGGCCTCCTTTAGTTCATAGGA 57.991 45.455 0.00 0.00 36.65 2.94
2501 5011 4.779993 AAGGCCTCCTTTAGTTCATAGG 57.220 45.455 5.23 0.00 41.69 2.57
2502 5012 5.301555 GCTAAGGCCTCCTTTAGTTCATAG 58.698 45.833 5.23 0.00 41.69 2.23
2503 5013 5.291905 GCTAAGGCCTCCTTTAGTTCATA 57.708 43.478 5.23 0.00 41.69 2.15
2504 5014 4.157849 GCTAAGGCCTCCTTTAGTTCAT 57.842 45.455 5.23 0.00 41.69 2.57
2505 5015 3.629142 GCTAAGGCCTCCTTTAGTTCA 57.371 47.619 5.23 0.00 41.69 3.18
2594 5108 1.202557 GGTACACCGACACCTGTTTCA 60.203 52.381 0.00 0.00 0.00 2.69
2600 5114 0.107268 GTTTGGGTACACCGACACCT 59.893 55.000 0.00 0.00 44.64 4.00
2613 5127 3.749665 TTTCTTGATGGCTTGTTTGGG 57.250 42.857 0.00 0.00 0.00 4.12
2811 5325 7.293073 AGGGAGTATCATAACATGCAAGATTT 58.707 34.615 0.00 0.00 36.25 2.17
2835 5349 1.730612 GCGAAGTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
2836 5350 1.799544 GCGAAGTAAAAAGGACCGGA 58.200 50.000 9.46 0.00 0.00 5.14
2837 5351 0.441145 CGCGAAGTAAAAAGGACCGG 59.559 55.000 0.00 0.00 0.00 5.28
2838 5352 1.142474 ACGCGAAGTAAAAAGGACCG 58.858 50.000 15.93 0.00 0.00 4.79
2839 5353 4.934075 AATACGCGAAGTAAAAAGGACC 57.066 40.909 15.93 0.00 39.04 4.46
2840 5354 8.885302 ATTTTAATACGCGAAGTAAAAAGGAC 57.115 30.769 15.93 0.00 39.04 3.85
2841 5355 9.332301 CAATTTTAATACGCGAAGTAAAAAGGA 57.668 29.630 15.93 0.00 39.04 3.36
2842 5356 9.120422 ACAATTTTAATACGCGAAGTAAAAAGG 57.880 29.630 15.93 15.94 39.04 3.11
2849 5363 8.662141 ACTTGATACAATTTTAATACGCGAAGT 58.338 29.630 15.93 2.17 0.00 3.01
2850 5364 9.144085 GACTTGATACAATTTTAATACGCGAAG 57.856 33.333 15.93 1.44 0.00 3.79
2851 5365 8.657729 TGACTTGATACAATTTTAATACGCGAA 58.342 29.630 15.93 0.00 0.00 4.70
2852 5366 8.187354 TGACTTGATACAATTTTAATACGCGA 57.813 30.769 15.93 0.00 0.00 5.87
2853 5367 8.814733 TTGACTTGATACAATTTTAATACGCG 57.185 30.769 3.53 3.53 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.