AutoCloner

Multiple sequence alignment - TraesCS5A01G119900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G119900	chr5A	100.000	3608	0	0	1	3608	253599310	253595703	0.000000e+00	6663
1	TraesCS5A01G119900	chr5A	70.828	761	187	24	2865	3603	155197438	155198185	3.760000e-30	143
2	TraesCS5A01G119900	chr5A	73.902	410	83	18	3217	3608	314682911	314682508	3.760000e-30	143
3	TraesCS5A01G119900	chr4D	85.340	3131	407	30	515	3604	74359860	74362979	0.000000e+00	3192
4	TraesCS5A01G119900	chr4D	84.132	3132	443	32	515	3604	139502503	139505622	0.000000e+00	2981
5	TraesCS5A01G119900	chr3D	84.606	3131	423	35	515	3604	614096286	614093174	0.000000e+00	3057
6	TraesCS5A01G119900	chr7D	84.502	3110	443	24	528	3608	139194662	139197761	0.000000e+00	3037
7	TraesCS5A01G119900	chr7D	72.573	824	176	42	2811	3603	125433141	125432337	1.300000e-54	224
8	TraesCS5A01G119900	chr2D	84.377	3130	436	30	515	3604	165340075	165336959	0.000000e+00	3022
9	TraesCS5A01G119900	chr7B	84.236	3102	446	27	535	3603	643752615	643749524	0.000000e+00	2979
10	TraesCS5A01G119900	chr7B	83.498	3133	472	30	504	3603	598930822	598927702	0.000000e+00	2880
11	TraesCS5A01G119900	chr1A	83.434	3133	466	38	505	3604	462129880	462132992	0.000000e+00	2861
12	TraesCS5A01G119900	chr1A	72.405	819	174	38	2811	3608	111784794	111784007	2.820000e-51	213
13	TraesCS5A01G119900	chr2A	86.907	2528	303	14	1097	3600	616123363	616125886	0.000000e+00	2809
14	TraesCS5A01G119900	chr2B	82.750	3113	468	46	536	3608	61464265	61461182	0.000000e+00	2710
15	TraesCS5A01G119900	chr2B	78.067	269	42	16	536	795	61459189	61458929	1.730000e-33	154
16	TraesCS5A01G119900	chr1B	82.960	2723	421	25	924	3608	211336407	211339124	0.000000e+00	2418
17	TraesCS5A01G119900	chr5B	93.702	524	11	4	1	514	216658533	216659044	0.000000e+00	765
18	TraesCS5A01G119900	chr5D	94.386	285	8	1	1	285	193636632	193636908	7.160000e-117	431
19	TraesCS5A01G119900	chr5D	97.315	149	4	0	366	514	193637021	193637169	1.660000e-63	254

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G119900	chr5A	253595703	253599310	3607	True	6663.0	6663	100.0000	1	3608	1	chr5A.!!$R1	3607
1	TraesCS5A01G119900	chr4D	74359860	74362979	3119	False	3192.0	3192	85.3400	515	3604	1	chr4D.!!$F1	3089
2	TraesCS5A01G119900	chr4D	139502503	139505622	3119	False	2981.0	2981	84.1320	515	3604	1	chr4D.!!$F2	3089
3	TraesCS5A01G119900	chr3D	614093174	614096286	3112	True	3057.0	3057	84.6060	515	3604	1	chr3D.!!$R1	3089
4	TraesCS5A01G119900	chr7D	139194662	139197761	3099	False	3037.0	3037	84.5020	528	3608	1	chr7D.!!$F1	3080
5	TraesCS5A01G119900	chr7D	125432337	125433141	804	True	224.0	224	72.5730	2811	3603	1	chr7D.!!$R1	792
6	TraesCS5A01G119900	chr2D	165336959	165340075	3116	True	3022.0	3022	84.3770	515	3604	1	chr2D.!!$R1	3089
7	TraesCS5A01G119900	chr7B	643749524	643752615	3091	True	2979.0	2979	84.2360	535	3603	1	chr7B.!!$R2	3068
8	TraesCS5A01G119900	chr7B	598927702	598930822	3120	True	2880.0	2880	83.4980	504	3603	1	chr7B.!!$R1	3099
9	TraesCS5A01G119900	chr1A	462129880	462132992	3112	False	2861.0	2861	83.4340	505	3604	1	chr1A.!!$F1	3099
10	TraesCS5A01G119900	chr1A	111784007	111784794	787	True	213.0	213	72.4050	2811	3608	1	chr1A.!!$R1	797
11	TraesCS5A01G119900	chr2A	616123363	616125886	2523	False	2809.0	2809	86.9070	1097	3600	1	chr2A.!!$F1	2503
12	TraesCS5A01G119900	chr2B	61458929	61464265	5336	True	1432.0	2710	80.4085	536	3608	2	chr2B.!!$R1	3072
13	TraesCS5A01G119900	chr1B	211336407	211339124	2717	False	2418.0	2418	82.9600	924	3608	1	chr1B.!!$F1	2684
14	TraesCS5A01G119900	chr5B	216658533	216659044	511	False	765.0	765	93.7020	1	514	1	chr5B.!!$F1	513
15	TraesCS5A01G119900	chr5D	193636632	193637169	537	False	342.5	431	95.8505	1	514	2	chr5D.!!$F1	513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
520	598	0.033504	AATGGTCGCTCGTTGTCACT	59.966	50.000	0.00	0.00	3.41	F
523	601	0.039798	GGTCGCTCGTTGTCACTACA	60.040	55.000	0.00	0.00	2.74	F
767	862	1.134965	CCTTTCTGCCTACTCTGGACG	60.135	57.143	0.00	0.00	4.79	F
830	927	1.175983	ACCGAATCCTGCCGCAAAAA	61.176	50.000	0.00	0.00	1.94	F
1654	1769	1.227409	TTCAGCGCCAACGAGTTCA	60.227	52.632	2.29	43.93	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1654	1769	0.037877	AGCTTGTGCATCTCCAGCTT	59.962	50.000	0.00	0.0	42.74	3.74	R
1741	1856	0.178068	GAGGGATTGAGCGCCAGTAA	59.822	55.000	2.29	0.0	0.00	2.24	R
2148	2275	0.320374	CTGGGGCGTTGAGTAAGTCA	59.680	55.000	0.00	0.0	0.00	3.41	R
2284	2416	0.321653	GTGCTTCCGGAGTCCAACAT	60.322	55.000	10.49	0.0	0.00	2.71	R
2689	2822	1.077212	GCTGCATCTCCACCATGGT	60.077	57.895	13.00	13.0	39.03	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	4.877251	TGAATTATGGTTAAGTACGGGCAC	59.123	41.667	0.00	0.00	0.00	5.01
41	42	4.765813	ATTATGGTTAAGTACGGGCACT	57.234	40.909	0.00	0.00	0.00	4.40
42	43	5.874897	ATTATGGTTAAGTACGGGCACTA	57.125	39.130	0.00	0.00	0.00	2.74
43	44	5.674052	TTATGGTTAAGTACGGGCACTAA	57.326	39.130	0.00	0.00	0.00	2.24
44	45	4.765813	ATGGTTAAGTACGGGCACTAAT	57.234	40.909	0.00	0.00	0.00	1.73
45	46	4.556592	TGGTTAAGTACGGGCACTAATT	57.443	40.909	0.00	0.00	0.00	1.40
46	47	5.674052	TGGTTAAGTACGGGCACTAATTA	57.326	39.130	0.00	0.00	0.00	1.40
47	48	6.047511	TGGTTAAGTACGGGCACTAATTAA	57.952	37.500	0.00	0.00	0.00	1.40
94	99	6.430451	CAAACACAAGCACTTAGAGGTAAAG	58.570	40.000	0.00	0.00	0.00	1.85
208	213	5.540337	TGTACAGTCTGAAGAAGGAAGACAT	59.460	40.000	6.91	0.00	42.28	3.06
355	427	5.824904	TTAAGACTACCTACGCTAACAGG	57.175	43.478	0.00	0.00	37.97	4.00
364	436	2.953466	ACGCTAACAGGCTTCGAATA	57.047	45.000	0.00	0.00	0.00	1.75
480	558	7.044249	CGATATCGTCTTGAAAGTGTAATTCGT	60.044	37.037	17.06	0.00	34.11	3.85
520	598	0.033504	AATGGTCGCTCGTTGTCACT	59.966	50.000	0.00	0.00	0.00	3.41
523	601	0.039798	GGTCGCTCGTTGTCACTACA	60.040	55.000	0.00	0.00	0.00	2.74
526	604	1.335810	TCGCTCGTTGTCACTACAGTT	59.664	47.619	0.00	0.00	36.83	3.16
532	610	2.285602	CGTTGTCACTACAGTTGTGCAC	60.286	50.000	10.75	10.75	36.83	4.57
609	689	2.049526	CTGTAGGCGCGTGTGTGA	60.050	61.111	13.84	0.00	0.00	3.58
646	737	3.423848	GGTACTTAACCCACGTCGG	57.576	57.895	0.00	0.00	43.16	4.79
765	860	1.573108	CCCTTTCTGCCTACTCTGGA	58.427	55.000	0.00	0.00	0.00	3.86
766	861	1.208293	CCCTTTCTGCCTACTCTGGAC	59.792	57.143	0.00	0.00	0.00	4.02
767	862	1.134965	CCTTTCTGCCTACTCTGGACG	60.135	57.143	0.00	0.00	0.00	4.79
773	869	1.686110	CCTACTCTGGACGCCCCTT	60.686	63.158	0.00	0.00	35.38	3.95
785	881	1.748329	CGCCCCTTGATCCAGATCGA	61.748	60.000	3.33	0.58	40.63	3.59
830	927	1.175983	ACCGAATCCTGCCGCAAAAA	61.176	50.000	0.00	0.00	0.00	1.94
906	1004	4.521062	GTGCGATCTGCTCCGGCT	62.521	66.667	0.00	0.00	46.63	5.52
944	1044	2.582436	GGTTGGATCGGCTCGGAA	59.418	61.111	0.00	0.00	0.00	4.30
1143	1243	1.897225	AAGATCTGCTGGCGCTGTCT	61.897	55.000	7.64	0.00	36.58	3.41
1314	1417	3.353836	CAACAACAGGGACCGCCG	61.354	66.667	0.00	0.00	33.83	6.46
1315	1418	3.868985	AACAACAGGGACCGCCGT	61.869	61.111	0.00	0.00	33.83	5.68
1359	1462	2.217038	TCCGCCTCTGCTCCAAGTT	61.217	57.895	0.00	0.00	34.43	2.66
1361	1464	1.294780	CGCCTCTGCTCCAAGTTCT	59.705	57.895	0.00	0.00	34.43	3.01
1380	1495	4.681421	CTCCAGCAGCAGAACGAA	57.319	55.556	0.00	0.00	0.00	3.85
1431	1546	2.281761	AAGCCACCCAAGCACGAG	60.282	61.111	0.00	0.00	0.00	4.18
1452	1567	3.118454	CCGCGTTTCGATGGCACT	61.118	61.111	4.92	0.00	41.67	4.40
1483	1598	2.202878	GGTTAGATCGCTGCCGCA	60.203	61.111	0.00	0.00	35.30	5.69
1592	1707	4.270566	GCAAGCATTTTGTCAAACACATGA	59.729	37.500	11.12	0.00	33.90	3.07
1639	1754	3.198068	GCAGCAATAATCGAGGAGTTCA	58.802	45.455	0.00	0.00	0.00	3.18
1645	1760	1.888436	AATCGAGGAGTTCAGCGCCA	61.888	55.000	2.29	0.00	39.73	5.69
1654	1769	1.227409	TTCAGCGCCAACGAGTTCA	60.227	52.632	2.29	0.00	43.93	3.18
1741	1856	1.277842	TCGACAGCCACATGTACCATT	59.722	47.619	0.00	0.00	32.25	3.16
1768	1883	1.361993	CTCAATCCCTCGCTCTCCG	59.638	63.158	0.00	0.00	38.61	4.63
1793	1908	1.464997	GTTCTTCATCACGCAGTTCCC	59.535	52.381	0.00	0.00	41.61	3.97
1985	2112	1.968017	AACAGCCCGACGACTACGA	60.968	57.895	0.00	0.00	42.66	3.43
2154	2281	2.653967	CGTGCACGCGCTTGACTTA	61.654	57.895	28.16	0.00	39.64	2.24
2158	2285	1.282248	GCACGCGCTTGACTTACTCA	61.282	55.000	19.16	0.00	34.30	3.41
2184	2316	1.923395	AGACCCGGCAATTCCTCCA	60.923	57.895	0.00	0.00	0.00	3.86
2259	2391	3.077556	ATCCGCCTCCGAGCACTT	61.078	61.111	0.00	0.00	36.29	3.16
2264	2396	3.059982	CCTCCGAGCACTTGTGGA	58.940	61.111	2.81	0.00	0.00	4.02
2364	2496	2.004808	CTACCACGCAGGAGATCGCA	62.005	60.000	0.93	0.00	41.22	5.10
2374	2506	1.446099	GAGATCGCAACGCTGGACA	60.446	57.895	0.00	0.00	0.00	4.02
2378	2510	3.725459	CGCAACGCTGGACATGCA	61.725	61.111	0.00	0.00	38.69	3.96
2470	2602	0.036765	GTTCTCCACGCCCATGTACA	60.037	55.000	0.00	0.00	0.00	2.90
2568	2701	1.004044	CAGGACCAGTGCATCTCCTTT	59.996	52.381	0.00	0.00	0.00	3.11
2605	2738	0.454196	GGTCACGTTGCAAGGTGTTT	59.546	50.000	37.23	12.17	43.28	2.83
2622	2755	2.291282	TGTTTGACCCAAGTCCACAACT	60.291	45.455	0.00	0.00	42.81	3.16
2635	2768	2.273179	ACAACTACTCTCGCCGCCA	61.273	57.895	0.00	0.00	0.00	5.69
2689	2822	0.801872	CAACGACATTTGGGCGATGA	59.198	50.000	0.00	0.00	30.77	2.92
2715	2848	2.821366	GAGATGCAGCCACCACCG	60.821	66.667	0.00	0.00	0.00	4.94
2790	2923	2.125512	GATGTCTTCGCCACGCCT	60.126	61.111	0.00	0.00	0.00	5.52
2834	2967	2.261172	TACGATCACGCGGTCACCTG	62.261	60.000	12.47	0.00	43.96	4.00
3027	3160	0.885879	TCTGCGTGGATTACAGACGT	59.114	50.000	0.00	0.00	35.58	4.34
3060	3193	5.220854	CGTCACTGTGAAGAACAAATTTCCT	60.221	40.000	17.14	0.00	38.67	3.36
3081	3214	1.107945	TGCCGATCATGGACGAACTA	58.892	50.000	12.45	0.00	0.00	2.24
3084	3217	2.481449	GCCGATCATGGACGAACTACTT	60.481	50.000	12.45	0.00	0.00	2.24
3215	3348	3.423154	CCACTTCCAGTTCCGCGC	61.423	66.667	0.00	0.00	0.00	6.86
3220	3353	3.545124	TTCCAGTTCCGCGCCATGT	62.545	57.895	0.00	0.00	0.00	3.21
3322	3456	6.257411	GTCATCATCTTCATTGACGACATTCT	59.743	38.462	0.00	0.00	36.57	2.40
3349	3494	2.233186	TCAGTGAGACATGGAAGAGCAG	59.767	50.000	0.00	0.00	0.00	4.24
3363	3508	2.033141	GCAGCTGGAGCACCTTCA	59.967	61.111	17.12	0.00	45.16	3.02
3531	3686	1.598130	GACCAACGCCACTGAGCTT	60.598	57.895	0.00	0.00	0.00	3.74
3539	3694	3.832171	CACTGAGCTTCGCGCGTC	61.832	66.667	30.98	20.19	45.59	5.19
3604	3759	1.493950	GATCATCGCCAAGCCACTCG	61.494	60.000	0.00	0.00	0.00	4.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
94	99	3.439129	GGTACATGCCCACTTTGTAACTC	59.561	47.826	0.00	0.00	32.14	3.01
183	188	5.010112	TGTCTTCCTTCTTCAGACTGTACAG	59.990	44.000	21.44	21.44	38.24	2.74
480	558	8.102047	ACCATTTTATTCCATTTCTTTGCATCA	58.898	29.630	0.00	0.00	0.00	3.07
597	677	4.012895	CTTGGTCACACACGCGCC	62.013	66.667	5.73	0.00	0.00	6.53
601	681	2.978010	GGCCCTTGGTCACACACG	60.978	66.667	0.00	0.00	0.00	4.49
609	689	2.610859	ATCGACCTGGCCCTTGGT	60.611	61.111	11.34	11.34	39.60	3.67
640	730	2.028839	TGTTCAATACATCACCCGACGT	60.029	45.455	0.00	0.00	0.00	4.34
643	733	2.679639	GCCTGTTCAATACATCACCCGA	60.680	50.000	0.00	0.00	35.85	5.14
646	737	3.347216	ACAGCCTGTTCAATACATCACC	58.653	45.455	0.00	0.00	35.85	4.02
658	749	7.868906	TTAGTTTACTAAACAACAGCCTGTT	57.131	32.000	3.74	3.74	43.79	3.16
765	860	1.832912	GATCTGGATCAAGGGGCGT	59.167	57.895	0.00	0.00	37.74	5.68
766	861	1.301244	CGATCTGGATCAAGGGGCG	60.301	63.158	10.62	0.00	37.69	6.13
767	862	0.034616	CTCGATCTGGATCAAGGGGC	59.965	60.000	10.62	0.00	37.69	5.80
773	869	1.751351	GTCACACCTCGATCTGGATCA	59.249	52.381	10.62	0.00	37.69	2.92
801	898	0.467384	AGGATTCGGTGGCTCTGATG	59.533	55.000	0.00	0.00	0.00	3.07
830	927	1.678970	GTGGGGCAGCGGAGAAAAT	60.679	57.895	0.00	0.00	0.00	1.82
906	1004	2.361865	CCGGGGATTTTGGGCGAA	60.362	61.111	0.00	0.00	0.00	4.70
969	1069	4.287781	TGCCGCGTCTGAACCGAA	62.288	61.111	4.92	0.00	0.00	4.30
1380	1495	4.116585	TGTTGGTGGTGGTGCGGT	62.117	61.111	0.00	0.00	0.00	5.68
1431	1546	2.782615	CCATCGAAACGCGGGAAC	59.217	61.111	12.47	0.00	41.33	3.62
1452	1567	0.974010	CTAACCAGAGGTACGGGGCA	60.974	60.000	0.00	0.00	38.15	5.36
1455	1570	1.607628	CGATCTAACCAGAGGTACGGG	59.392	57.143	0.00	0.00	33.12	5.28
1483	1598	2.016096	GCGGTAGAGGTCGAAGTAGGT	61.016	57.143	0.00	0.00	0.00	3.08
1592	1707	2.780040	CCTCCCATCCCAGGCCAT	60.780	66.667	5.01	0.00	0.00	4.40
1635	1750	1.204312	GAACTCGTTGGCGCTGAAC	59.796	57.895	7.64	10.05	38.14	3.18
1639	1754	2.607892	GCTTGAACTCGTTGGCGCT	61.608	57.895	7.64	0.00	38.14	5.92
1645	1760	2.693069	CATCTCCAGCTTGAACTCGTT	58.307	47.619	0.00	0.00	0.00	3.85
1654	1769	0.037877	AGCTTGTGCATCTCCAGCTT	59.962	50.000	0.00	0.00	42.74	3.74
1741	1856	0.178068	GAGGGATTGAGCGCCAGTAA	59.822	55.000	2.29	0.00	0.00	2.24
1768	1883	0.874390	TGCGTGATGAAGAACTTGGC	59.126	50.000	0.00	0.00	0.00	4.52
1793	1908	2.076863	GTTCATCCTTGAGTCCCAACG	58.923	52.381	0.00	0.00	32.27	4.10
1870	1985	3.842923	CTCCTCCTGGATGCGCGT	61.843	66.667	8.43	0.00	42.29	6.01
2082	2209	3.369147	CGACTTGAATTGTGAGTAGCTGG	59.631	47.826	0.00	0.00	0.00	4.85
2088	2215	1.148310	CGCCGACTTGAATTGTGAGT	58.852	50.000	0.00	0.00	0.00	3.41
2148	2275	0.320374	CTGGGGCGTTGAGTAAGTCA	59.680	55.000	0.00	0.00	0.00	3.41
2154	2281	3.637273	GGGTCTGGGGCGTTGAGT	61.637	66.667	0.00	0.00	0.00	3.41
2184	2316	3.612247	GATGGTGCAGCACTCCGGT	62.612	63.158	22.79	3.49	34.45	5.28
2235	2367	1.380785	TCGGAGGCGGATGGTACTT	60.381	57.895	0.00	0.00	0.00	2.24
2259	2391	0.843309	ACATGACCTGGTTGTCCACA	59.157	50.000	0.00	0.00	39.03	4.17
2284	2416	0.321653	GTGCTTCCGGAGTCCAACAT	60.322	55.000	10.49	0.00	0.00	2.71
2352	2484	2.510238	AGCGTTGCGATCTCCTGC	60.510	61.111	0.00	0.00	0.00	4.85
2364	2496	1.968017	CACCTGCATGTCCAGCGTT	60.968	57.895	0.00	0.00	33.85	4.84
2378	2510	2.282180	AATCGCCGTTTGCCACCT	60.282	55.556	0.00	0.00	36.24	4.00
2554	2687	2.189594	TGGACAAAGGAGATGCACTG	57.810	50.000	0.00	0.00	0.00	3.66
2558	2691	1.667724	CGTCATGGACAAAGGAGATGC	59.332	52.381	0.00	0.00	32.09	3.91
2568	2701	2.710902	CCTCTCGCCGTCATGGACA	61.711	63.158	0.00	0.00	42.00	4.02
2605	2738	2.367567	GAGTAGTTGTGGACTTGGGTCA	59.632	50.000	0.00	0.00	43.77	4.02
2616	2749	1.805945	GGCGGCGAGAGTAGTTGTG	60.806	63.158	12.98	0.00	0.00	3.33
2622	2755	2.055633	TTGGATGGCGGCGAGAGTA	61.056	57.895	12.98	0.00	0.00	2.59
2635	2768	1.176527	CACAATTCAGCCGGTTGGAT	58.823	50.000	18.99	12.96	37.49	3.41
2689	2822	1.077212	GCTGCATCTCCACCATGGT	60.077	57.895	13.00	13.00	39.03	3.55
2834	2967	1.604915	GGTTGAGCTCCTTCCTCCC	59.395	63.158	12.15	0.00	0.00	4.30
3006	3139	1.920574	CGTCTGTAATCCACGCAGAAG	59.079	52.381	0.00	0.00	40.40	2.85
3027	3160	2.951457	TCACAGTGACGTTGTTGAGA	57.049	45.000	0.00	0.00	0.00	3.27
3060	3193	1.083489	GTTCGTCCATGATCGGCAAA	58.917	50.000	0.00	0.00	0.00	3.68
3081	3214	1.675641	GCCGGCCAGTTCATCAAGT	60.676	57.895	18.11	0.00	0.00	3.16
3215	3348	2.100631	GTCAGGCCGAACGACATGG	61.101	63.158	11.33	0.00	0.00	3.66
3273	3407	3.762779	ACTTACGTGTATACTTGGCGAC	58.237	45.455	0.00	0.00	0.00	5.19
3309	3443	6.038161	TCACTGAAAACAAGAATGTCGTCAAT	59.962	34.615	0.00	0.00	39.40	2.57
3322	3456	5.436175	TCTTCCATGTCTCACTGAAAACAA	58.564	37.500	0.00	0.00	0.00	2.83
3349	3494	1.376553	GAGGTGAAGGTGCTCCAGC	60.377	63.158	7.70	0.00	42.50	4.85
3466	3621	1.887198	GGTCTTCTCGGAGTCTGTTGA	59.113	52.381	4.69	0.00	0.00	3.18
3543	3698	2.056223	GTAGTAGCCGGTGAGCCCA	61.056	63.158	1.90	0.00	0.00	5.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.