Multiple sequence alignment - TraesCS5A01G118500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G118500 chr5A 100.000 3535 0 0 1 3535 244428498 244432032 0.000000e+00 6529.0
1 TraesCS5A01G118500 chr5A 82.084 1267 195 15 1423 2670 244427447 244426194 0.000000e+00 1053.0
2 TraesCS5A01G118500 chr5A 93.301 209 13 1 3022 3229 670826311 670826103 1.230000e-79 307.0
3 TraesCS5A01G118500 chr5D 96.854 2352 63 4 697 3038 204862177 204864527 0.000000e+00 3923.0
4 TraesCS5A01G118500 chr5D 82.927 1189 177 16 1423 2606 204860746 204859579 0.000000e+00 1048.0
5 TraesCS5A01G118500 chr5D 83.544 395 57 7 1 390 204861801 204862192 2.590000e-96 363.0
6 TraesCS5A01G118500 chr5D 93.277 238 15 1 3298 3535 204864728 204864964 2.020000e-92 350.0
7 TraesCS5A01G118500 chr5B 96.422 2348 72 4 697 3038 207589310 207586969 0.000000e+00 3860.0
8 TraesCS5A01G118500 chr5B 93.902 246 13 2 3224 3469 207586976 207586733 1.550000e-98 370.0
9 TraesCS5A01G118500 chr5B 77.724 413 53 21 1 390 207589691 207589295 2.140000e-52 217.0
10 TraesCS5A01G118500 chr7B 94.249 313 17 1 389 700 717328903 717329215 8.880000e-131 477.0
11 TraesCS5A01G118500 chr3A 92.771 332 21 2 370 700 180416518 180416189 8.880000e-131 477.0
12 TraesCS5A01G118500 chr3A 93.720 207 9 4 3026 3232 19178581 19178379 1.230000e-79 307.0
13 TraesCS5A01G118500 chr3B 93.968 315 18 1 392 706 606376354 606376041 3.190000e-130 475.0
14 TraesCS5A01G118500 chr3B 92.923 325 21 2 373 695 8462703 8463027 4.130000e-129 472.0
15 TraesCS5A01G118500 chr2B 94.737 304 16 0 393 696 593006294 593005991 1.150000e-129 473.0
16 TraesCS5A01G118500 chr4B 94.444 306 17 0 392 697 40215228 40215533 4.130000e-129 472.0
17 TraesCS5A01G118500 chr4B 91.166 283 24 1 1216 1497 43760167 43759885 1.990000e-102 383.0
18 TraesCS5A01G118500 chr4B 87.611 113 7 3 2532 2643 420422150 420422044 1.330000e-24 124.0
19 TraesCS5A01G118500 chr4B 86.842 114 7 4 2532 2643 330794561 330794454 1.720000e-23 121.0
20 TraesCS5A01G118500 chr4B 78.400 125 25 2 2102 2225 600242337 600242460 2.930000e-11 80.5
21 TraesCS5A01G118500 chr1A 93.930 313 17 1 392 704 520861060 520860750 4.130000e-129 472.0
22 TraesCS5A01G118500 chr1A 94.554 202 9 2 3026 3227 52453654 52453455 9.530000e-81 311.0
23 TraesCS5A01G118500 chr1A 80.508 118 21 2 2164 2280 390709627 390709743 4.860000e-14 89.8
24 TraesCS5A01G118500 chr7A 93.610 313 20 0 384 696 732946007 732945695 5.340000e-128 468.0
25 TraesCS5A01G118500 chr7A 95.098 204 8 2 3030 3232 563500417 563500619 1.580000e-83 320.0
26 TraesCS5A01G118500 chr7A 93.810 210 8 5 3024 3232 31655754 31655959 9.530000e-81 311.0
27 TraesCS5A01G118500 chr7A 93.689 206 11 2 3030 3233 642935767 642935972 1.230000e-79 307.0
28 TraesCS5A01G118500 chr4A 93.631 314 19 1 392 705 572708415 572708727 5.340000e-128 468.0
29 TraesCS5A01G118500 chr4A 91.319 288 25 0 1210 1497 572540542 572540829 9.200000e-106 394.0
30 TraesCS5A01G118500 chr4A 94.203 207 9 2 3028 3232 519575478 519575683 2.650000e-81 313.0
31 TraesCS5A01G118500 chr4A 80.808 99 19 0 2127 2225 682365600 682365698 1.050000e-10 78.7
32 TraesCS5A01G118500 chr2A 96.517 201 5 2 3031 3230 38649961 38649762 7.310000e-87 331.0
33 TraesCS5A01G118500 chr2A 97.861 187 4 0 3039 3225 63805892 63805706 1.220000e-84 324.0
34 TraesCS5A01G118500 chr4D 93.151 219 14 1 1280 1497 30505711 30505493 1.580000e-83 320.0
35 TraesCS5A01G118500 chr4D 79.200 125 24 2 2102 2225 475675939 475676062 6.290000e-13 86.1
36 TraesCS5A01G118500 chrUn 88.496 113 6 3 2532 2643 12578621 12578727 2.860000e-26 130.0
37 TraesCS5A01G118500 chr1B 88.073 109 5 4 2532 2638 44188625 44188727 4.790000e-24 122.0
38 TraesCS5A01G118500 chr1B 75.862 174 38 4 2109 2280 420685678 420685849 6.290000e-13 86.1
39 TraesCS5A01G118500 chr6B 84.906 106 10 2 2538 2643 157341901 157341802 6.240000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G118500 chr5A 244428498 244432032 3534 False 6529.000000 6529 100.000000 1 3535 1 chr5A.!!$F1 3534
1 TraesCS5A01G118500 chr5A 244426194 244427447 1253 True 1053.000000 1053 82.084000 1423 2670 1 chr5A.!!$R1 1247
2 TraesCS5A01G118500 chr5D 204861801 204864964 3163 False 1545.333333 3923 91.225000 1 3535 3 chr5D.!!$F1 3534
3 TraesCS5A01G118500 chr5D 204859579 204860746 1167 True 1048.000000 1048 82.927000 1423 2606 1 chr5D.!!$R1 1183
4 TraesCS5A01G118500 chr5B 207586733 207589691 2958 True 1482.333333 3860 89.349333 1 3469 3 chr5B.!!$R1 3468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 659 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.0 2.69 F
637 661 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 2535 0.317436 CACTCTCTACGATGAGCGGC 60.317 60.000 0.00 0.00 46.49 6.53 R
2638 2698 2.352422 CTGCTAGGGCCTGTGCAA 59.648 61.111 27.53 16.31 40.13 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.576463 CGGTGAAGGGAATGAATAAGGAAG 59.424 45.833 0.00 0.00 0.00 3.46
59 62 2.256741 AGGAAGGGAGGGGAAATAGGAT 59.743 50.000 0.00 0.00 0.00 3.24
60 63 2.376855 GGAAGGGAGGGGAAATAGGATG 59.623 54.545 0.00 0.00 0.00 3.51
69 72 1.141053 GGAAATAGGATGGGTCGTGCT 59.859 52.381 0.00 0.00 0.00 4.40
84 87 0.727398 GTGCTTAATGAGTGGGTCGC 59.273 55.000 0.00 0.00 0.00 5.19
89 92 3.334691 CTTAATGAGTGGGTCGCTTTCA 58.665 45.455 0.00 0.00 0.00 2.69
93 96 2.970324 GTGGGTCGCTTTCACGCA 60.970 61.111 0.00 0.00 34.56 5.24
94 97 2.203084 TGGGTCGCTTTCACGCAA 60.203 55.556 0.00 0.00 34.06 4.85
95 98 2.443957 GTGGGTCGCTTTCACGCAAG 62.444 60.000 0.00 0.00 38.32 4.01
97 100 1.959226 GGTCGCTTTCACGCAAGGA 60.959 57.895 0.00 0.00 46.39 3.36
98 101 1.298859 GGTCGCTTTCACGCAAGGAT 61.299 55.000 0.00 0.00 46.39 3.24
99 102 0.179215 GTCGCTTTCACGCAAGGATG 60.179 55.000 0.00 0.00 46.39 3.51
100 103 0.602638 TCGCTTTCACGCAAGGATGT 60.603 50.000 0.00 0.00 46.39 3.06
103 106 2.319472 GCTTTCACGCAAGGATGTTTC 58.681 47.619 0.00 0.00 46.39 2.78
104 107 2.030805 GCTTTCACGCAAGGATGTTTCT 60.031 45.455 0.00 0.00 46.39 2.52
107 111 5.757886 CTTTCACGCAAGGATGTTTCTTAA 58.242 37.500 0.00 0.00 46.39 1.85
109 113 4.130857 TCACGCAAGGATGTTTCTTAACA 58.869 39.130 0.00 0.00 45.49 2.41
115 119 5.506649 GCAAGGATGTTTCTTAACAAACGGA 60.507 40.000 2.50 0.00 46.62 4.69
117 121 5.374071 AGGATGTTTCTTAACAAACGGACT 58.626 37.500 2.50 0.00 46.62 3.85
129 133 4.637276 ACAAACGGACTGATTGTATGACA 58.363 39.130 8.07 0.00 41.25 3.58
162 166 3.438781 GCCCACATTAAGATTCGTGTTCA 59.561 43.478 0.00 0.00 0.00 3.18
167 190 6.313658 CCACATTAAGATTCGTGTTCAGATGA 59.686 38.462 0.00 0.00 0.00 2.92
180 203 1.001268 TCAGATGATAGCCGAAGCGTC 60.001 52.381 0.00 0.00 46.67 5.19
183 206 0.595053 ATGATAGCCGAAGCGTCACG 60.595 55.000 0.00 0.00 46.67 4.35
186 209 1.929806 ATAGCCGAAGCGTCACGTCA 61.930 55.000 0.00 0.00 46.67 4.35
192 215 0.171455 GAAGCGTCACGTCAGGAGAT 59.829 55.000 0.00 0.00 0.00 2.75
195 218 1.816835 AGCGTCACGTCAGGAGATTAA 59.183 47.619 0.00 0.00 0.00 1.40
200 223 5.550981 CGTCACGTCAGGAGATTAAAAATG 58.449 41.667 0.00 0.00 0.00 2.32
202 225 6.309494 CGTCACGTCAGGAGATTAAAAATGTA 59.691 38.462 0.00 0.00 0.00 2.29
245 268 3.125146 TCGAAAATCGATGCAGAAACCAG 59.875 43.478 0.00 0.00 44.82 4.00
246 269 3.120199 CGAAAATCGATGCAGAAACCAGT 60.120 43.478 0.00 0.00 43.74 4.00
248 271 4.425577 AAATCGATGCAGAAACCAGTTC 57.574 40.909 0.00 0.00 36.38 3.01
250 273 0.804989 CGATGCAGAAACCAGTTCCC 59.195 55.000 0.00 0.00 36.86 3.97
275 298 5.451103 GGGCTGCAAGATTTAAAGAAGATCC 60.451 44.000 0.50 0.00 34.07 3.36
282 305 7.770897 GCAAGATTTAAAGAAGATCCCACTCTA 59.229 37.037 0.00 0.00 0.00 2.43
283 306 9.844257 CAAGATTTAAAGAAGATCCCACTCTAT 57.156 33.333 0.00 0.00 0.00 1.98
288 311 4.065321 AGAAGATCCCACTCTATTTGCG 57.935 45.455 0.00 0.00 0.00 4.85
308 332 1.209019 GCAGAGGATCAAAGAGGCTCA 59.791 52.381 18.26 0.00 37.82 4.26
314 338 4.786425 AGGATCAAAGAGGCTCATAAACC 58.214 43.478 18.26 12.09 0.00 3.27
321 345 4.495690 AGAGGCTCATAAACCTTTCCTC 57.504 45.455 18.26 0.00 36.05 3.71
325 349 4.289672 AGGCTCATAAACCTTTCCTCTTCA 59.710 41.667 0.00 0.00 29.74 3.02
353 377 4.838986 TGTAGCTTCACTCCCTTAGAACTT 59.161 41.667 0.00 0.00 0.00 2.66
358 382 5.656480 CTTCACTCCCTTAGAACTTCTAGC 58.344 45.833 0.00 0.00 29.56 3.42
378 402 8.299990 TCTAGCTTTCTGTTAGCTCTATCTTT 57.700 34.615 8.99 0.00 45.52 2.52
382 406 7.548780 AGCTTTCTGTTAGCTCTATCTTTTGAG 59.451 37.037 0.00 0.00 45.52 3.02
383 407 7.333174 GCTTTCTGTTAGCTCTATCTTTTGAGT 59.667 37.037 0.00 0.00 35.74 3.41
384 408 9.213799 CTTTCTGTTAGCTCTATCTTTTGAGTT 57.786 33.333 0.00 0.00 33.22 3.01
385 409 9.561069 TTTCTGTTAGCTCTATCTTTTGAGTTT 57.439 29.630 0.00 0.00 33.22 2.66
419 443 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
420 444 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
421 445 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
422 446 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
423 447 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
424 448 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
425 449 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
426 450 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
427 451 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
428 452 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
429 453 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
430 454 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
431 455 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
432 456 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
433 457 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
437 461 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
438 462 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
439 463 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
440 464 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
441 465 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
442 466 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
443 467 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
444 468 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
445 469 2.026915 TATACACGCGCATACACTCG 57.973 50.000 5.73 0.00 0.00 4.18
446 470 1.206745 ATACACGCGCATACACTCGC 61.207 55.000 5.73 0.00 46.98 5.03
450 474 2.105128 GCGCATACACTCGCCTCT 59.895 61.111 0.30 0.00 45.01 3.69
451 475 1.359117 GCGCATACACTCGCCTCTA 59.641 57.895 0.30 0.00 45.01 2.43
452 476 0.039074 GCGCATACACTCGCCTCTAT 60.039 55.000 0.30 0.00 45.01 1.98
453 477 1.691127 CGCATACACTCGCCTCTATG 58.309 55.000 0.00 0.00 0.00 2.23
454 478 1.266989 CGCATACACTCGCCTCTATGA 59.733 52.381 0.00 0.00 0.00 2.15
455 479 2.287608 CGCATACACTCGCCTCTATGAA 60.288 50.000 0.00 0.00 0.00 2.57
456 480 3.053455 GCATACACTCGCCTCTATGAAC 58.947 50.000 0.00 0.00 0.00 3.18
457 481 3.300857 CATACACTCGCCTCTATGAACG 58.699 50.000 0.00 0.00 0.00 3.95
458 482 0.179134 ACACTCGCCTCTATGAACGC 60.179 55.000 0.00 0.00 0.00 4.84
459 483 0.179137 CACTCGCCTCTATGAACGCA 60.179 55.000 0.00 0.00 0.00 5.24
460 484 0.179134 ACTCGCCTCTATGAACGCAC 60.179 55.000 0.00 0.00 0.00 5.34
461 485 0.179137 CTCGCCTCTATGAACGCACA 60.179 55.000 0.00 0.00 0.00 4.57
462 486 0.457853 TCGCCTCTATGAACGCACAC 60.458 55.000 0.00 0.00 0.00 3.82
463 487 0.735978 CGCCTCTATGAACGCACACA 60.736 55.000 0.00 0.00 0.00 3.72
464 488 0.721718 GCCTCTATGAACGCACACAC 59.278 55.000 0.00 0.00 0.00 3.82
465 489 0.992072 CCTCTATGAACGCACACACG 59.008 55.000 0.00 0.00 39.50 4.49
466 490 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
467 491 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
468 492 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
469 493 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
470 494 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
471 495 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
474 498 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
475 499 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
476 500 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
477 501 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
478 502 2.525877 ACACGCACACCCTACCCT 60.526 61.111 0.00 0.00 0.00 4.34
479 503 2.144738 ACACGCACACCCTACCCTT 61.145 57.895 0.00 0.00 0.00 3.95
480 504 0.832983 ACACGCACACCCTACCCTTA 60.833 55.000 0.00 0.00 0.00 2.69
481 505 0.539986 CACGCACACCCTACCCTTAT 59.460 55.000 0.00 0.00 0.00 1.73
482 506 0.539986 ACGCACACCCTACCCTTATG 59.460 55.000 0.00 0.00 0.00 1.90
483 507 0.828022 CGCACACCCTACCCTTATGA 59.172 55.000 0.00 0.00 0.00 2.15
484 508 1.202533 CGCACACCCTACCCTTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
485 509 1.475213 GCACACCCTACCCTTATGAGC 60.475 57.143 0.00 0.00 0.00 4.26
486 510 1.837439 CACACCCTACCCTTATGAGCA 59.163 52.381 0.00 0.00 0.00 4.26
487 511 1.838077 ACACCCTACCCTTATGAGCAC 59.162 52.381 0.00 0.00 0.00 4.40
488 512 1.141053 CACCCTACCCTTATGAGCACC 59.859 57.143 0.00 0.00 0.00 5.01
489 513 1.009675 ACCCTACCCTTATGAGCACCT 59.990 52.381 0.00 0.00 0.00 4.00
490 514 1.694696 CCCTACCCTTATGAGCACCTC 59.305 57.143 0.00 0.00 0.00 3.85
491 515 1.694696 CCTACCCTTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
492 516 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
493 517 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
494 518 0.830648 CCCTTATGAGCACCTCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
495 519 1.209504 CCCTTATGAGCACCTCCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
496 520 2.555199 CCTTATGAGCACCTCCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
497 521 2.168521 CCTTATGAGCACCTCCGAAAGA 59.831 50.000 0.00 0.00 0.00 2.52
498 522 2.961526 TATGAGCACCTCCGAAAGAC 57.038 50.000 0.00 0.00 0.00 3.01
499 523 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
500 524 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
501 525 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
502 526 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
503 527 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
504 528 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
505 529 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
506 530 1.595993 CCTCCGAAAGACTGAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
507 531 0.456995 CTCCGAAAGACTGAGCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
508 532 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
509 533 1.009389 CCGAAAGACTGAGCCGACAC 61.009 60.000 0.00 0.00 0.00 3.67
510 534 0.318699 CGAAAGACTGAGCCGACACA 60.319 55.000 0.00 0.00 0.00 3.72
511 535 1.670087 CGAAAGACTGAGCCGACACAT 60.670 52.381 0.00 0.00 0.00 3.21
512 536 1.996191 GAAAGACTGAGCCGACACATC 59.004 52.381 0.00 0.00 0.00 3.06
513 537 0.969149 AAGACTGAGCCGACACATCA 59.031 50.000 0.00 0.00 0.00 3.07
514 538 1.189752 AGACTGAGCCGACACATCAT 58.810 50.000 0.00 0.00 0.00 2.45
515 539 1.135915 AGACTGAGCCGACACATCATC 59.864 52.381 0.00 0.00 0.00 2.92
516 540 1.135915 GACTGAGCCGACACATCATCT 59.864 52.381 0.00 0.00 0.00 2.90
517 541 1.552337 ACTGAGCCGACACATCATCTT 59.448 47.619 0.00 0.00 0.00 2.40
518 542 1.931841 CTGAGCCGACACATCATCTTG 59.068 52.381 0.00 0.00 0.00 3.02
519 543 1.550072 TGAGCCGACACATCATCTTGA 59.450 47.619 0.00 0.00 0.00 3.02
520 544 2.200067 GAGCCGACACATCATCTTGAG 58.800 52.381 0.00 0.00 0.00 3.02
521 545 1.827344 AGCCGACACATCATCTTGAGA 59.173 47.619 0.00 0.00 0.00 3.27
522 546 2.433604 AGCCGACACATCATCTTGAGAT 59.566 45.455 0.00 0.00 34.56 2.75
523 547 3.118482 AGCCGACACATCATCTTGAGATT 60.118 43.478 0.00 0.00 31.21 2.40
524 548 3.624861 GCCGACACATCATCTTGAGATTT 59.375 43.478 0.00 0.00 31.21 2.17
525 549 4.811024 GCCGACACATCATCTTGAGATTTA 59.189 41.667 0.00 0.00 31.21 1.40
526 550 5.277058 GCCGACACATCATCTTGAGATTTAC 60.277 44.000 0.00 0.00 31.21 2.01
527 551 5.051441 CCGACACATCATCTTGAGATTTACG 60.051 44.000 0.00 0.00 31.21 3.18
528 552 5.743872 CGACACATCATCTTGAGATTTACGA 59.256 40.000 0.00 0.00 31.21 3.43
529 553 6.253512 CGACACATCATCTTGAGATTTACGAA 59.746 38.462 0.00 0.00 31.21 3.85
530 554 7.514280 CGACACATCATCTTGAGATTTACGAAG 60.514 40.741 0.00 0.00 31.21 3.79
531 555 7.099764 ACACATCATCTTGAGATTTACGAAGT 58.900 34.615 0.00 0.00 37.29 3.01
532 556 7.276658 ACACATCATCTTGAGATTTACGAAGTC 59.723 37.037 0.00 0.00 35.39 3.01
533 557 7.276438 CACATCATCTTGAGATTTACGAAGTCA 59.724 37.037 0.00 0.00 35.39 3.41
534 558 7.984050 ACATCATCTTGAGATTTACGAAGTCAT 59.016 33.333 0.00 0.00 35.39 3.06
535 559 7.993821 TCATCTTGAGATTTACGAAGTCATC 57.006 36.000 0.00 0.00 35.39 2.92
536 560 6.693113 TCATCTTGAGATTTACGAAGTCATCG 59.307 38.462 0.00 0.00 44.39 3.84
544 568 2.856089 CGAAGTCATCGTAGGCGTC 58.144 57.895 0.00 0.00 46.52 5.19
545 569 0.377554 CGAAGTCATCGTAGGCGTCT 59.622 55.000 0.00 0.00 46.52 4.18
546 570 1.202154 CGAAGTCATCGTAGGCGTCTT 60.202 52.381 0.00 0.00 46.52 3.01
547 571 2.186076 GAAGTCATCGTAGGCGTCTTG 58.814 52.381 0.00 0.00 39.49 3.02
548 572 1.174783 AGTCATCGTAGGCGTCTTGT 58.825 50.000 0.00 0.00 39.49 3.16
549 573 1.132643 AGTCATCGTAGGCGTCTTGTC 59.867 52.381 0.00 0.00 39.49 3.18
550 574 0.098200 TCATCGTAGGCGTCTTGTCG 59.902 55.000 0.00 0.00 39.49 4.35
551 575 0.179171 CATCGTAGGCGTCTTGTCGT 60.179 55.000 0.00 0.00 39.49 4.34
552 576 0.098376 ATCGTAGGCGTCTTGTCGTC 59.902 55.000 0.00 0.00 39.49 4.20
553 577 1.862147 CGTAGGCGTCTTGTCGTCG 60.862 63.158 0.00 0.00 40.52 5.12
554 578 1.499056 GTAGGCGTCTTGTCGTCGA 59.501 57.895 0.00 0.00 40.52 4.20
555 579 0.792356 GTAGGCGTCTTGTCGTCGAC 60.792 60.000 18.51 18.51 40.52 4.20
558 582 2.501222 CGTCTTGTCGTCGACGGG 60.501 66.667 35.05 22.16 46.61 5.28
559 583 2.949106 GTCTTGTCGTCGACGGGA 59.051 61.111 35.05 23.80 40.29 5.14
560 584 1.283793 GTCTTGTCGTCGACGGGAA 59.716 57.895 35.05 25.26 40.29 3.97
561 585 1.000736 GTCTTGTCGTCGACGGGAAC 61.001 60.000 35.05 26.09 40.29 3.62
574 598 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
575 599 3.277962 GGAACGTCTCCTCCCACTA 57.722 57.895 8.87 0.00 41.61 2.74
576 600 1.553706 GGAACGTCTCCTCCCACTAA 58.446 55.000 8.87 0.00 41.61 2.24
577 601 1.897802 GGAACGTCTCCTCCCACTAAA 59.102 52.381 8.87 0.00 41.61 1.85
578 602 2.301009 GGAACGTCTCCTCCCACTAAAA 59.699 50.000 8.87 0.00 41.61 1.52
579 603 3.586892 GAACGTCTCCTCCCACTAAAAG 58.413 50.000 0.00 0.00 0.00 2.27
580 604 1.275573 ACGTCTCCTCCCACTAAAAGC 59.724 52.381 0.00 0.00 0.00 3.51
581 605 1.736032 CGTCTCCTCCCACTAAAAGCG 60.736 57.143 0.00 0.00 0.00 4.68
582 606 0.249398 TCTCCTCCCACTAAAAGCGC 59.751 55.000 0.00 0.00 0.00 5.92
583 607 0.036388 CTCCTCCCACTAAAAGCGCA 60.036 55.000 11.47 0.00 0.00 6.09
584 608 0.618458 TCCTCCCACTAAAAGCGCAT 59.382 50.000 11.47 0.00 0.00 4.73
585 609 1.017387 CCTCCCACTAAAAGCGCATC 58.983 55.000 11.47 0.00 0.00 3.91
586 610 0.652592 CTCCCACTAAAAGCGCATCG 59.347 55.000 11.47 0.00 0.00 3.84
597 621 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
598 622 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
599 623 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
600 624 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
601 625 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
602 626 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
603 627 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
604 628 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
605 629 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
606 630 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
607 631 4.036262 TCGCCGGAAATCCTGAAATAAATG 59.964 41.667 5.05 0.00 0.00 2.32
608 632 4.051237 GCCGGAAATCCTGAAATAAATGC 58.949 43.478 5.05 0.00 0.00 3.56
609 633 4.441356 GCCGGAAATCCTGAAATAAATGCA 60.441 41.667 5.05 0.00 0.00 3.96
610 634 5.284079 CCGGAAATCCTGAAATAAATGCAG 58.716 41.667 0.00 0.00 0.00 4.41
620 644 7.329438 CTGAAATAAATGCAGGAATAATGCG 57.671 36.000 0.00 0.00 46.87 4.73
621 645 7.036996 TGAAATAAATGCAGGAATAATGCGA 57.963 32.000 0.00 0.00 46.87 5.10
622 646 7.140705 TGAAATAAATGCAGGAATAATGCGAG 58.859 34.615 0.00 0.00 46.87 5.03
623 647 3.360249 AAATGCAGGAATAATGCGAGC 57.640 42.857 0.00 0.00 46.87 5.03
624 648 1.971481 ATGCAGGAATAATGCGAGCA 58.029 45.000 0.00 0.00 46.87 4.26
625 649 1.016627 TGCAGGAATAATGCGAGCAC 58.983 50.000 0.00 0.00 46.87 4.40
626 650 0.308993 GCAGGAATAATGCGAGCACC 59.691 55.000 0.00 0.00 33.31 5.01
627 651 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
628 652 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
629 653 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
630 654 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
631 655 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
632 656 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
633 657 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
634 658 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
635 659 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
636 660 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
637 661 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
638 662 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
639 663 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
640 664 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
641 665 1.992557 AGCACCAGGATTTGAACCCTA 59.007 47.619 0.00 0.00 0.00 3.53
642 666 2.025887 AGCACCAGGATTTGAACCCTAG 60.026 50.000 0.00 0.00 0.00 3.02
643 667 2.290960 GCACCAGGATTTGAACCCTAGT 60.291 50.000 0.00 0.00 0.00 2.57
644 668 3.347216 CACCAGGATTTGAACCCTAGTG 58.653 50.000 0.00 0.00 36.24 2.74
645 669 2.308866 ACCAGGATTTGAACCCTAGTGG 59.691 50.000 0.00 0.00 41.37 4.00
659 683 4.086706 CCTAGTGGGTTGGGAATATCAC 57.913 50.000 0.00 0.00 0.00 3.06
660 684 3.716872 CCTAGTGGGTTGGGAATATCACT 59.283 47.826 0.00 0.00 38.71 3.41
661 685 3.652057 AGTGGGTTGGGAATATCACTG 57.348 47.619 0.00 0.00 34.65 3.66
662 686 2.919602 AGTGGGTTGGGAATATCACTGT 59.080 45.455 0.00 0.00 34.65 3.55
663 687 3.054361 AGTGGGTTGGGAATATCACTGTC 60.054 47.826 0.00 0.00 34.65 3.51
664 688 2.241176 TGGGTTGGGAATATCACTGTCC 59.759 50.000 0.00 0.00 0.00 4.02
665 689 2.241176 GGGTTGGGAATATCACTGTCCA 59.759 50.000 0.00 0.00 32.70 4.02
666 690 3.117512 GGGTTGGGAATATCACTGTCCAT 60.118 47.826 0.00 0.00 32.70 3.41
667 691 4.137543 GGTTGGGAATATCACTGTCCATC 58.862 47.826 0.00 0.00 32.70 3.51
668 692 4.141390 GGTTGGGAATATCACTGTCCATCT 60.141 45.833 0.00 0.00 32.70 2.90
669 693 5.071788 GGTTGGGAATATCACTGTCCATCTA 59.928 44.000 0.00 0.00 32.70 1.98
670 694 6.409234 GGTTGGGAATATCACTGTCCATCTAA 60.409 42.308 0.00 0.00 32.70 2.10
671 695 6.174720 TGGGAATATCACTGTCCATCTAAC 57.825 41.667 0.00 0.00 32.70 2.34
672 696 5.071788 TGGGAATATCACTGTCCATCTAACC 59.928 44.000 0.00 0.00 32.70 2.85
673 697 5.071788 GGGAATATCACTGTCCATCTAACCA 59.928 44.000 0.00 0.00 32.70 3.67
674 698 6.240002 GGGAATATCACTGTCCATCTAACCAT 60.240 42.308 0.00 0.00 32.70 3.55
675 699 6.876257 GGAATATCACTGTCCATCTAACCATC 59.124 42.308 0.00 0.00 0.00 3.51
676 700 7.256475 GGAATATCACTGTCCATCTAACCATCT 60.256 40.741 0.00 0.00 0.00 2.90
677 701 5.543507 ATCACTGTCCATCTAACCATCTC 57.456 43.478 0.00 0.00 0.00 2.75
678 702 4.352893 TCACTGTCCATCTAACCATCTCA 58.647 43.478 0.00 0.00 0.00 3.27
679 703 4.777366 TCACTGTCCATCTAACCATCTCAA 59.223 41.667 0.00 0.00 0.00 3.02
680 704 4.872691 CACTGTCCATCTAACCATCTCAAC 59.127 45.833 0.00 0.00 0.00 3.18
681 705 4.080863 ACTGTCCATCTAACCATCTCAACC 60.081 45.833 0.00 0.00 0.00 3.77
682 706 3.843619 TGTCCATCTAACCATCTCAACCA 59.156 43.478 0.00 0.00 0.00 3.67
683 707 4.192317 GTCCATCTAACCATCTCAACCAC 58.808 47.826 0.00 0.00 0.00 4.16
684 708 3.843619 TCCATCTAACCATCTCAACCACA 59.156 43.478 0.00 0.00 0.00 4.17
685 709 4.080919 TCCATCTAACCATCTCAACCACAG 60.081 45.833 0.00 0.00 0.00 3.66
686 710 3.981071 TCTAACCATCTCAACCACAGG 57.019 47.619 0.00 0.00 0.00 4.00
687 711 3.248024 TCTAACCATCTCAACCACAGGT 58.752 45.455 0.00 0.00 37.65 4.00
696 720 3.725754 AACCACAGGTTGATTCGCT 57.274 47.368 0.00 0.00 45.07 4.93
697 721 1.523758 AACCACAGGTTGATTCGCTC 58.476 50.000 0.00 0.00 45.07 5.03
698 722 0.687354 ACCACAGGTTGATTCGCTCT 59.313 50.000 0.00 0.00 27.29 4.09
699 723 1.072331 ACCACAGGTTGATTCGCTCTT 59.928 47.619 0.00 0.00 27.29 2.85
700 724 2.154462 CCACAGGTTGATTCGCTCTTT 58.846 47.619 0.00 0.00 0.00 2.52
701 725 2.554032 CCACAGGTTGATTCGCTCTTTT 59.446 45.455 0.00 0.00 0.00 2.27
702 726 3.558505 CACAGGTTGATTCGCTCTTTTG 58.441 45.455 0.00 0.00 0.00 2.44
703 727 3.250762 CACAGGTTGATTCGCTCTTTTGA 59.749 43.478 0.00 0.00 0.00 2.69
770 802 2.479837 ATGTACAGTGTGGACACGTTG 58.520 47.619 5.88 5.51 45.23 4.10
850 882 1.221466 CGTCTTTTGCTGCAGTCGGA 61.221 55.000 16.64 4.40 0.00 4.55
860 892 3.126858 TGCTGCAGTCGGAAAATATTCAC 59.873 43.478 16.64 0.00 37.29 3.18
1058 1091 7.169476 GGTACAAGTATCGGCTTATCTTTCTTC 59.831 40.741 0.00 0.00 0.00 2.87
1064 1097 4.504858 TCGGCTTATCTTTCTTCACCTTC 58.495 43.478 0.00 0.00 0.00 3.46
1449 1482 3.327404 GGAGAAGGTTCCCCCGCA 61.327 66.667 0.00 0.00 38.74 5.69
1625 1658 2.596346 TGGTACAGTAAGAACGGGACA 58.404 47.619 0.00 0.00 36.44 4.02
1814 1853 3.461773 CACTGCGGGTCCTCGGAT 61.462 66.667 0.00 0.00 0.00 4.18
1939 1978 1.191489 TGCTCAGTGACGGATTCCCA 61.191 55.000 0.00 0.00 0.00 4.37
2201 2241 3.702048 GTGCGGTACAGGCAGGGA 61.702 66.667 10.68 0.00 41.83 4.20
2450 2490 2.286365 ACACCGACAACCCAATCAAT 57.714 45.000 0.00 0.00 0.00 2.57
2665 2725 1.065126 GGCCCTAGCAGTGATCAAACT 60.065 52.381 0.00 0.00 42.56 2.66
2721 2781 3.731652 TCGAGTTCCGTTTCTGGTAAA 57.268 42.857 0.00 0.00 39.75 2.01
2777 2838 1.767759 ATTAGTGGGCATGAACCAGC 58.232 50.000 9.55 5.82 39.00 4.85
2806 2867 5.363101 GGATGTGCATTGAGAAGACAGATA 58.637 41.667 0.00 0.00 0.00 1.98
2847 2908 4.280174 GCATCAGATATTTGGCAAGATGGT 59.720 41.667 19.93 3.95 33.77 3.55
2891 2952 2.108075 TGCTCAAACCTCCCATTTCTGA 59.892 45.455 0.00 0.00 0.00 3.27
2926 2987 3.119388 GGCAAGATGATGCTTGTGCTTTA 60.119 43.478 0.00 0.00 45.41 1.85
2938 2999 4.491676 CTTGTGCTTTATGATGCTGCTTT 58.508 39.130 0.00 0.00 0.00 3.51
2945 3006 0.754217 ATGATGCTGCTTTCGGCCAT 60.754 50.000 2.24 0.00 43.94 4.40
3029 3090 1.981636 CTGCTGCTCTCCCTGAAGT 59.018 57.895 0.00 0.00 0.00 3.01
3030 3091 0.324285 CTGCTGCTCTCCCTGAAGTT 59.676 55.000 0.00 0.00 0.00 2.66
3031 3092 0.767375 TGCTGCTCTCCCTGAAGTTT 59.233 50.000 0.00 0.00 0.00 2.66
3032 3093 1.143684 TGCTGCTCTCCCTGAAGTTTT 59.856 47.619 0.00 0.00 0.00 2.43
3033 3094 2.234143 GCTGCTCTCCCTGAAGTTTTT 58.766 47.619 0.00 0.00 0.00 1.94
3034 3095 2.227626 GCTGCTCTCCCTGAAGTTTTTC 59.772 50.000 0.00 0.00 0.00 2.29
3035 3096 3.749226 CTGCTCTCCCTGAAGTTTTTCT 58.251 45.455 0.00 0.00 34.31 2.52
3036 3097 4.140536 CTGCTCTCCCTGAAGTTTTTCTT 58.859 43.478 0.00 0.00 39.32 2.52
3037 3098 4.536765 TGCTCTCCCTGAAGTTTTTCTTT 58.463 39.130 0.00 0.00 36.40 2.52
3038 3099 4.580580 TGCTCTCCCTGAAGTTTTTCTTTC 59.419 41.667 0.00 0.00 36.40 2.62
3039 3100 4.580580 GCTCTCCCTGAAGTTTTTCTTTCA 59.419 41.667 0.00 0.00 36.40 2.69
3040 3101 5.278218 GCTCTCCCTGAAGTTTTTCTTTCAG 60.278 44.000 7.14 7.14 36.40 3.02
3041 3102 5.755849 TCTCCCTGAAGTTTTTCTTTCAGT 58.244 37.500 11.83 0.00 36.40 3.41
3042 3103 6.187682 TCTCCCTGAAGTTTTTCTTTCAGTT 58.812 36.000 11.83 0.00 36.40 3.16
3043 3104 6.663523 TCTCCCTGAAGTTTTTCTTTCAGTTT 59.336 34.615 11.83 0.00 36.40 2.66
3044 3105 7.178451 TCTCCCTGAAGTTTTTCTTTCAGTTTT 59.822 33.333 11.83 0.00 36.40 2.43
3045 3106 7.096551 TCCCTGAAGTTTTTCTTTCAGTTTTG 58.903 34.615 11.83 0.00 36.40 2.44
3046 3107 6.183360 CCCTGAAGTTTTTCTTTCAGTTTTGC 60.183 38.462 11.83 0.00 36.40 3.68
3047 3108 6.591448 CCTGAAGTTTTTCTTTCAGTTTTGCT 59.409 34.615 11.83 0.00 36.40 3.91
3048 3109 7.759433 CCTGAAGTTTTTCTTTCAGTTTTGCTA 59.241 33.333 11.83 0.00 36.40 3.49
3049 3110 9.139174 CTGAAGTTTTTCTTTCAGTTTTGCTAA 57.861 29.630 6.16 0.00 36.40 3.09
3050 3111 9.482627 TGAAGTTTTTCTTTCAGTTTTGCTAAA 57.517 25.926 0.00 0.00 36.40 1.85
3051 3112 9.958285 GAAGTTTTTCTTTCAGTTTTGCTAAAG 57.042 29.630 0.00 0.00 36.40 1.85
3052 3113 7.963981 AGTTTTTCTTTCAGTTTTGCTAAAGC 58.036 30.769 0.00 0.00 42.50 3.51
3078 3139 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
3079 3140 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
3087 3148 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
3088 3149 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
3089 3150 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
3090 3151 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
3091 3152 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
3092 3153 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
3096 3157 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
3097 3158 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
3098 3159 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
3099 3160 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
3100 3161 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
3101 3162 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
3102 3163 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
3103 3164 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
3104 3165 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
3118 3179 8.134905 TGTCATTGATCTTACATTGAGATTCG 57.865 34.615 0.00 0.00 34.13 3.34
3119 3180 7.765819 TGTCATTGATCTTACATTGAGATTCGT 59.234 33.333 0.00 0.00 34.13 3.85
3120 3181 8.060679 GTCATTGATCTTACATTGAGATTCGTG 58.939 37.037 0.00 0.00 34.13 4.35
3121 3182 7.765819 TCATTGATCTTACATTGAGATTCGTGT 59.234 33.333 0.00 0.00 34.13 4.49
3122 3183 9.034544 CATTGATCTTACATTGAGATTCGTGTA 57.965 33.333 0.00 0.00 34.13 2.90
3123 3184 8.996024 TTGATCTTACATTGAGATTCGTGTAA 57.004 30.769 0.00 0.00 34.13 2.41
3124 3185 8.996024 TGATCTTACATTGAGATTCGTGTAAA 57.004 30.769 0.00 0.00 36.82 2.01
3125 3186 9.599866 TGATCTTACATTGAGATTCGTGTAAAT 57.400 29.630 0.00 0.00 36.82 1.40
3181 3242 8.939201 ATACTTGATTCACTCACTTAGATGTG 57.061 34.615 0.00 0.00 39.15 3.21
3182 3243 5.641209 ACTTGATTCACTCACTTAGATGTGC 59.359 40.000 0.00 0.00 37.81 4.57
3183 3244 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
3184 3245 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
3185 3246 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
3186 3247 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
3187 3248 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
3188 3249 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
3189 3250 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
3190 3251 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
3191 3252 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
3192 3253 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
3193 3254 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
3194 3255 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
3195 3256 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
3211 3272 3.788933 AGAGCACATCTAGATATGCCCT 58.211 45.455 28.11 21.33 41.89 5.19
3212 3273 4.940483 AGAGCACATCTAGATATGCCCTA 58.060 43.478 28.11 0.00 41.89 3.53
3213 3274 4.955450 AGAGCACATCTAGATATGCCCTAG 59.045 45.833 28.11 6.62 41.89 3.02
3214 3275 4.940483 AGCACATCTAGATATGCCCTAGA 58.060 43.478 28.11 0.00 41.89 2.43
3215 3276 4.709397 AGCACATCTAGATATGCCCTAGAC 59.291 45.833 28.11 3.72 41.89 2.59
3216 3277 4.464244 GCACATCTAGATATGCCCTAGACA 59.536 45.833 22.87 0.00 43.57 3.41
3217 3278 5.623368 GCACATCTAGATATGCCCTAGACAC 60.623 48.000 22.87 0.00 43.57 3.67
3218 3279 5.478332 CACATCTAGATATGCCCTAGACACA 59.522 44.000 4.54 0.00 43.57 3.72
3219 3280 5.478679 ACATCTAGATATGCCCTAGACACAC 59.521 44.000 4.54 0.00 43.57 3.82
3220 3281 4.408276 TCTAGATATGCCCTAGACACACC 58.592 47.826 0.00 0.00 38.08 4.16
3221 3282 2.330216 AGATATGCCCTAGACACACCC 58.670 52.381 0.00 0.00 0.00 4.61
3296 3491 3.919216 AGACTGAGAAATTCCTGTGACG 58.081 45.455 0.00 0.00 0.00 4.35
3302 3497 3.997021 GAGAAATTCCTGTGACGATGTGT 59.003 43.478 0.00 0.00 0.00 3.72
3306 3501 2.900716 TCCTGTGACGATGTGTTTGA 57.099 45.000 0.00 0.00 0.00 2.69
3315 3510 1.464608 CGATGTGTTTGACGCAATCCT 59.535 47.619 0.00 0.00 42.39 3.24
3316 3511 2.095768 CGATGTGTTTGACGCAATCCTT 60.096 45.455 0.00 0.00 42.39 3.36
3317 3512 3.609175 CGATGTGTTTGACGCAATCCTTT 60.609 43.478 0.00 0.00 42.39 3.11
3383 3578 4.059511 TCTGCATCAGCCAAAAATGTTTG 58.940 39.130 0.93 0.93 43.26 2.93
3391 3586 6.586344 TCAGCCAAAAATGTTTGTGGATTTA 58.414 32.000 16.98 0.80 46.48 1.40
3421 3616 2.037902 TCAAGTTTATCGTGGCCACAGA 59.962 45.455 34.16 29.26 0.00 3.41
3440 3635 0.036732 ATGTGTGAAGGCATCGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
3513 3708 6.773976 TGTGGCTTTCTTTTTATATCAGGG 57.226 37.500 0.00 0.00 0.00 4.45
3517 3712 5.273944 GCTTTCTTTTTATATCAGGGCGTG 58.726 41.667 0.00 0.00 0.00 5.34
3522 3717 9.616156 TTTCTTTTTATATCAGGGCGTGTTATA 57.384 29.630 7.12 9.95 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.670247 CCTATTTCCCCTCCCTTCCTTATT 59.330 45.833 0.00 0.00 0.00 1.40
43 44 1.076438 CCCATCCTATTTCCCCTCCC 58.924 60.000 0.00 0.00 0.00 4.30
59 62 1.338674 CCACTCATTAAGCACGACCCA 60.339 52.381 0.00 0.00 0.00 4.51
60 63 1.369625 CCACTCATTAAGCACGACCC 58.630 55.000 0.00 0.00 0.00 4.46
69 72 3.071479 GTGAAAGCGACCCACTCATTAA 58.929 45.455 0.00 0.00 0.00 1.40
84 87 3.904136 AGAAACATCCTTGCGTGAAAG 57.096 42.857 0.00 0.00 0.00 2.62
89 92 5.278604 GTTTGTTAAGAAACATCCTTGCGT 58.721 37.500 20.08 0.00 44.85 5.24
93 96 5.826208 AGTCCGTTTGTTAAGAAACATCCTT 59.174 36.000 23.30 6.32 44.85 3.36
94 97 5.238650 CAGTCCGTTTGTTAAGAAACATCCT 59.761 40.000 23.30 13.90 44.85 3.24
95 98 5.237779 TCAGTCCGTTTGTTAAGAAACATCC 59.762 40.000 23.30 12.28 44.85 3.51
97 100 6.877611 ATCAGTCCGTTTGTTAAGAAACAT 57.122 33.333 23.30 9.09 44.85 2.71
98 101 6.094325 ACAATCAGTCCGTTTGTTAAGAAACA 59.906 34.615 23.30 6.60 43.85 2.83
99 102 6.492254 ACAATCAGTCCGTTTGTTAAGAAAC 58.508 36.000 16.20 16.20 34.53 2.78
100 103 6.687081 ACAATCAGTCCGTTTGTTAAGAAA 57.313 33.333 0.00 0.00 34.53 2.52
103 106 7.095397 TGTCATACAATCAGTCCGTTTGTTAAG 60.095 37.037 0.00 0.00 38.29 1.85
104 107 6.706716 TGTCATACAATCAGTCCGTTTGTTAA 59.293 34.615 0.00 0.00 38.29 2.01
107 111 4.637276 TGTCATACAATCAGTCCGTTTGT 58.363 39.130 0.00 0.00 40.05 2.83
109 113 4.635765 CCATGTCATACAATCAGTCCGTTT 59.364 41.667 0.00 0.00 0.00 3.60
115 119 4.156556 GTGTTGCCATGTCATACAATCAGT 59.843 41.667 4.31 0.00 0.00 3.41
117 121 4.156373 CAGTGTTGCCATGTCATACAATCA 59.844 41.667 4.31 3.00 0.00 2.57
143 147 7.294676 TCATCTGAACACGAATCTTAATGTG 57.705 36.000 0.00 0.00 38.28 3.21
144 148 9.254133 CTATCATCTGAACACGAATCTTAATGT 57.746 33.333 0.00 0.00 0.00 2.71
162 166 1.032794 TGACGCTTCGGCTATCATCT 58.967 50.000 0.00 0.00 35.04 2.90
167 190 1.226603 GACGTGACGCTTCGGCTAT 60.227 57.895 4.25 0.00 35.04 2.97
180 203 6.953743 CGTTACATTTTTAATCTCCTGACGTG 59.046 38.462 0.00 0.00 0.00 4.49
183 206 9.968743 CTAACGTTACATTTTTAATCTCCTGAC 57.031 33.333 3.29 0.00 0.00 3.51
232 255 0.804989 CGGGAACTGGTTTCTGCATC 59.195 55.000 0.00 0.00 34.26 3.91
245 268 1.250840 AAATCTTGCAGCCCGGGAAC 61.251 55.000 29.31 13.34 0.00 3.62
246 269 0.329931 TAAATCTTGCAGCCCGGGAA 59.670 50.000 29.31 8.72 0.00 3.97
248 271 1.134946 CTTTAAATCTTGCAGCCCGGG 59.865 52.381 19.09 19.09 0.00 5.73
250 273 3.440173 TCTTCTTTAAATCTTGCAGCCCG 59.560 43.478 0.00 0.00 0.00 6.13
275 298 1.134699 TCCTCTGCGCAAATAGAGTGG 60.135 52.381 19.36 13.34 38.98 4.00
282 305 2.681848 CTCTTTGATCCTCTGCGCAAAT 59.318 45.455 13.05 2.41 30.79 2.32
283 306 2.079158 CTCTTTGATCCTCTGCGCAAA 58.921 47.619 13.05 0.00 0.00 3.68
288 311 1.209019 TGAGCCTCTTTGATCCTCTGC 59.791 52.381 0.00 0.00 0.00 4.26
308 332 6.373759 ACAAAGGTGAAGAGGAAAGGTTTAT 58.626 36.000 0.00 0.00 0.00 1.40
314 338 4.646572 AGCTACAAAGGTGAAGAGGAAAG 58.353 43.478 0.00 0.00 30.51 2.62
321 345 3.748568 GGAGTGAAGCTACAAAGGTGAAG 59.251 47.826 0.00 0.00 32.57 3.02
325 349 2.339769 AGGGAGTGAAGCTACAAAGGT 58.660 47.619 0.00 0.00 34.01 3.50
358 382 8.770438 ACTCAAAAGATAGAGCTAACAGAAAG 57.230 34.615 0.00 0.00 35.28 2.62
394 418 5.122519 TGTGTCTGTACTGATGCTCAAAAA 58.877 37.500 5.69 0.00 0.00 1.94
395 419 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
396 420 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
397 421 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
398 422 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
399 423 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
400 424 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
401 425 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
402 426 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
403 427 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
404 428 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
405 429 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
406 430 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
407 431 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
408 432 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
409 433 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
410 434 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
411 435 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
412 436 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
413 437 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
414 438 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
415 439 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
416 440 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
417 441 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
418 442 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
421 445 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
422 446 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
423 447 3.561503 GAGTGTATGCGCGTGTATATGA 58.438 45.455 13.61 0.00 0.00 2.15
424 448 2.338520 CGAGTGTATGCGCGTGTATATG 59.661 50.000 13.61 0.00 0.00 1.78
425 449 2.581637 CGAGTGTATGCGCGTGTATAT 58.418 47.619 13.61 0.00 0.00 0.86
426 450 1.922880 GCGAGTGTATGCGCGTGTATA 60.923 52.381 13.61 2.40 43.96 1.47
427 451 1.206745 GCGAGTGTATGCGCGTGTAT 61.207 55.000 13.61 4.63 43.96 2.29
428 452 1.870458 GCGAGTGTATGCGCGTGTA 60.870 57.895 13.61 0.00 43.96 2.90
429 453 3.179265 GCGAGTGTATGCGCGTGT 61.179 61.111 13.61 0.00 43.96 4.49
434 458 1.266989 TCATAGAGGCGAGTGTATGCG 59.733 52.381 0.00 0.00 0.00 4.73
435 459 3.053455 GTTCATAGAGGCGAGTGTATGC 58.947 50.000 0.00 0.00 0.00 3.14
436 460 3.300857 CGTTCATAGAGGCGAGTGTATG 58.699 50.000 0.00 0.00 0.00 2.39
437 461 2.287668 GCGTTCATAGAGGCGAGTGTAT 60.288 50.000 0.00 0.00 0.00 2.29
438 462 1.065102 GCGTTCATAGAGGCGAGTGTA 59.935 52.381 0.00 0.00 0.00 2.90
439 463 0.179134 GCGTTCATAGAGGCGAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
440 464 0.179137 TGCGTTCATAGAGGCGAGTG 60.179 55.000 0.00 0.00 33.34 3.51
441 465 0.179134 GTGCGTTCATAGAGGCGAGT 60.179 55.000 0.00 0.00 33.34 4.18
442 466 0.179137 TGTGCGTTCATAGAGGCGAG 60.179 55.000 0.00 0.00 33.34 5.03
443 467 0.457853 GTGTGCGTTCATAGAGGCGA 60.458 55.000 0.00 0.00 33.34 5.54
444 468 0.735978 TGTGTGCGTTCATAGAGGCG 60.736 55.000 0.00 0.00 33.34 5.52
445 469 0.721718 GTGTGTGCGTTCATAGAGGC 59.278 55.000 0.00 0.00 0.00 4.70
446 470 0.992072 CGTGTGTGCGTTCATAGAGG 59.008 55.000 0.00 0.00 0.00 3.69
447 471 0.366871 GCGTGTGTGCGTTCATAGAG 59.633 55.000 0.00 0.00 0.00 2.43
448 472 0.319125 TGCGTGTGTGCGTTCATAGA 60.319 50.000 0.00 0.00 37.81 1.98
449 473 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
450 474 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
451 475 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
452 476 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
453 477 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
454 478 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
457 481 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
458 482 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
459 483 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
460 484 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
461 485 0.832983 TAAGGGTAGGGTGTGCGTGT 60.833 55.000 0.00 0.00 0.00 4.49
462 486 0.539986 ATAAGGGTAGGGTGTGCGTG 59.460 55.000 0.00 0.00 0.00 5.34
463 487 0.539986 CATAAGGGTAGGGTGTGCGT 59.460 55.000 0.00 0.00 0.00 5.24
464 488 0.828022 TCATAAGGGTAGGGTGTGCG 59.172 55.000 0.00 0.00 0.00 5.34
465 489 1.475213 GCTCATAAGGGTAGGGTGTGC 60.475 57.143 0.00 0.00 0.00 4.57
466 490 1.837439 TGCTCATAAGGGTAGGGTGTG 59.163 52.381 0.00 0.00 0.00 3.82
467 491 1.838077 GTGCTCATAAGGGTAGGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
468 492 1.141053 GGTGCTCATAAGGGTAGGGTG 59.859 57.143 0.00 0.00 0.00 4.61
469 493 1.009675 AGGTGCTCATAAGGGTAGGGT 59.990 52.381 0.00 0.00 0.00 4.34
470 494 1.694696 GAGGTGCTCATAAGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
471 495 1.694696 GGAGGTGCTCATAAGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
472 496 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
473 497 1.063492 TCGGAGGTGCTCATAAGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
474 498 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
475 499 0.830648 TTCGGAGGTGCTCATAAGGG 59.169 55.000 0.00 0.00 31.08 3.95
476 500 2.168521 TCTTTCGGAGGTGCTCATAAGG 59.831 50.000 0.00 0.00 31.08 2.69
477 501 3.118956 AGTCTTTCGGAGGTGCTCATAAG 60.119 47.826 0.00 0.00 31.08 1.73
478 502 2.832129 AGTCTTTCGGAGGTGCTCATAA 59.168 45.455 0.00 0.00 31.08 1.90
479 503 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
480 504 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
481 505 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
482 506 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
483 507 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
484 508 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
485 509 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
486 510 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
487 511 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
488 512 0.456995 GTCGGCTCAGTCTTTCGGAG 60.457 60.000 0.00 0.00 40.44 4.63
489 513 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
490 514 1.009389 GTGTCGGCTCAGTCTTTCGG 61.009 60.000 0.00 0.00 0.00 4.30
491 515 0.318699 TGTGTCGGCTCAGTCTTTCG 60.319 55.000 0.00 0.00 0.00 3.46
492 516 1.996191 GATGTGTCGGCTCAGTCTTTC 59.004 52.381 0.00 0.00 0.00 2.62
493 517 1.344438 TGATGTGTCGGCTCAGTCTTT 59.656 47.619 0.00 0.00 0.00 2.52
494 518 0.969149 TGATGTGTCGGCTCAGTCTT 59.031 50.000 0.00 0.00 0.00 3.01
495 519 1.135915 GATGATGTGTCGGCTCAGTCT 59.864 52.381 0.00 0.00 0.00 3.24
496 520 1.135915 AGATGATGTGTCGGCTCAGTC 59.864 52.381 0.00 0.00 0.00 3.51
497 521 1.189752 AGATGATGTGTCGGCTCAGT 58.810 50.000 0.00 0.00 0.00 3.41
498 522 1.931841 CAAGATGATGTGTCGGCTCAG 59.068 52.381 0.00 0.00 0.00 3.35
499 523 1.550072 TCAAGATGATGTGTCGGCTCA 59.450 47.619 0.00 0.00 0.00 4.26
500 524 2.159184 TCTCAAGATGATGTGTCGGCTC 60.159 50.000 0.00 0.00 0.00 4.70
501 525 1.827344 TCTCAAGATGATGTGTCGGCT 59.173 47.619 0.00 0.00 0.00 5.52
502 526 2.299993 TCTCAAGATGATGTGTCGGC 57.700 50.000 0.00 0.00 0.00 5.54
503 527 5.051441 CGTAAATCTCAAGATGATGTGTCGG 60.051 44.000 0.00 0.00 34.49 4.79
504 528 5.743872 TCGTAAATCTCAAGATGATGTGTCG 59.256 40.000 0.00 0.00 34.49 4.35
505 529 7.276658 ACTTCGTAAATCTCAAGATGATGTGTC 59.723 37.037 0.00 0.00 34.49 3.67
506 530 7.099764 ACTTCGTAAATCTCAAGATGATGTGT 58.900 34.615 0.00 0.00 34.49 3.72
507 531 7.276438 TGACTTCGTAAATCTCAAGATGATGTG 59.724 37.037 0.00 0.00 34.49 3.21
508 532 7.323420 TGACTTCGTAAATCTCAAGATGATGT 58.677 34.615 0.00 0.00 34.49 3.06
509 533 7.761651 TGACTTCGTAAATCTCAAGATGATG 57.238 36.000 0.00 0.00 34.49 3.07
510 534 7.380870 CGATGACTTCGTAAATCTCAAGATGAT 59.619 37.037 2.72 0.00 43.01 2.45
511 535 6.693113 CGATGACTTCGTAAATCTCAAGATGA 59.307 38.462 2.72 0.00 43.01 2.92
512 536 6.861158 CGATGACTTCGTAAATCTCAAGATG 58.139 40.000 2.72 0.00 43.01 2.90
527 551 2.186076 CAAGACGCCTACGATGACTTC 58.814 52.381 0.00 0.00 43.93 3.01
528 552 1.544691 ACAAGACGCCTACGATGACTT 59.455 47.619 0.00 0.00 43.93 3.01
529 553 1.132643 GACAAGACGCCTACGATGACT 59.867 52.381 0.00 0.00 43.93 3.41
530 554 1.546834 GACAAGACGCCTACGATGAC 58.453 55.000 0.00 0.00 43.93 3.06
531 555 0.098200 CGACAAGACGCCTACGATGA 59.902 55.000 0.00 0.00 43.93 2.92
532 556 0.179171 ACGACAAGACGCCTACGATG 60.179 55.000 0.00 0.00 43.93 3.84
533 557 0.098376 GACGACAAGACGCCTACGAT 59.902 55.000 0.00 0.00 43.93 3.73
534 558 1.499056 GACGACAAGACGCCTACGA 59.501 57.895 0.00 0.00 43.93 3.43
536 560 0.792356 GTCGACGACAAGACGCCTAC 60.792 60.000 22.66 0.00 37.89 3.18
537 561 1.499056 GTCGACGACAAGACGCCTA 59.501 57.895 22.66 0.00 37.89 3.93
538 562 2.254651 GTCGACGACAAGACGCCT 59.745 61.111 22.66 0.00 37.89 5.52
542 566 1.000736 GTTCCCGTCGACGACAAGAC 61.001 60.000 37.65 22.61 43.02 3.01
543 567 1.283793 GTTCCCGTCGACGACAAGA 59.716 57.895 37.65 24.01 43.02 3.02
544 568 2.078914 CGTTCCCGTCGACGACAAG 61.079 63.158 37.65 20.95 41.53 3.16
545 569 2.051076 CGTTCCCGTCGACGACAA 60.051 61.111 37.65 25.24 41.53 3.18
546 570 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
558 582 3.586892 CTTTTAGTGGGAGGAGACGTTC 58.413 50.000 0.00 0.00 0.00 3.95
559 583 2.289506 GCTTTTAGTGGGAGGAGACGTT 60.290 50.000 0.00 0.00 0.00 3.99
560 584 1.275573 GCTTTTAGTGGGAGGAGACGT 59.724 52.381 0.00 0.00 0.00 4.34
561 585 1.736032 CGCTTTTAGTGGGAGGAGACG 60.736 57.143 0.00 0.00 0.00 4.18
562 586 2.007547 GCGCTTTTAGTGGGAGGAGAC 61.008 57.143 0.00 0.00 0.00 3.36
563 587 0.249398 GCGCTTTTAGTGGGAGGAGA 59.751 55.000 0.00 0.00 0.00 3.71
564 588 0.036388 TGCGCTTTTAGTGGGAGGAG 60.036 55.000 9.73 0.00 0.00 3.69
565 589 0.618458 ATGCGCTTTTAGTGGGAGGA 59.382 50.000 9.73 0.00 0.00 3.71
566 590 1.017387 GATGCGCTTTTAGTGGGAGG 58.983 55.000 9.73 0.00 0.00 4.30
567 591 0.652592 CGATGCGCTTTTAGTGGGAG 59.347 55.000 9.73 0.00 0.00 4.30
568 592 2.762360 CGATGCGCTTTTAGTGGGA 58.238 52.632 9.73 0.00 0.00 4.37
580 604 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
581 605 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
582 606 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
583 607 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
584 608 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
585 609 4.290155 CATTTATTTCAGGATTTCCGGCG 58.710 43.478 0.00 0.00 42.08 6.46
586 610 4.051237 GCATTTATTTCAGGATTTCCGGC 58.949 43.478 0.00 0.00 42.08 6.13
587 611 5.261209 TGCATTTATTTCAGGATTTCCGG 57.739 39.130 0.00 0.00 42.08 5.14
595 619 6.364165 CGCATTATTCCTGCATTTATTTCAGG 59.636 38.462 1.29 1.29 46.60 3.86
596 620 7.140705 TCGCATTATTCCTGCATTTATTTCAG 58.859 34.615 0.00 0.00 39.64 3.02
597 621 7.036996 TCGCATTATTCCTGCATTTATTTCA 57.963 32.000 0.00 0.00 39.64 2.69
598 622 6.088616 GCTCGCATTATTCCTGCATTTATTTC 59.911 38.462 0.00 0.00 39.64 2.17
599 623 5.922544 GCTCGCATTATTCCTGCATTTATTT 59.077 36.000 0.00 0.00 39.64 1.40
600 624 5.009911 TGCTCGCATTATTCCTGCATTTATT 59.990 36.000 0.00 0.00 39.64 1.40
601 625 4.520111 TGCTCGCATTATTCCTGCATTTAT 59.480 37.500 0.00 0.00 39.64 1.40
602 626 3.882288 TGCTCGCATTATTCCTGCATTTA 59.118 39.130 0.00 0.00 39.64 1.40
603 627 2.689471 TGCTCGCATTATTCCTGCATTT 59.311 40.909 0.00 0.00 39.64 2.32
604 628 2.033801 GTGCTCGCATTATTCCTGCATT 59.966 45.455 0.00 0.00 39.64 3.56
605 629 1.605710 GTGCTCGCATTATTCCTGCAT 59.394 47.619 0.00 0.00 39.64 3.96
606 630 1.016627 GTGCTCGCATTATTCCTGCA 58.983 50.000 0.00 0.00 39.64 4.41
607 631 0.308993 GGTGCTCGCATTATTCCTGC 59.691 55.000 0.00 0.00 36.26 4.85
608 632 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
609 633 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
610 634 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
611 635 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
612 636 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
613 637 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
614 638 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
615 639 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
616 640 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
617 641 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
618 642 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
619 643 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
620 644 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
621 645 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
622 646 2.369394 CTAGGGTTCAAATCCTGGTGC 58.631 52.381 4.76 0.00 40.54 5.01
625 649 3.004752 CCACTAGGGTTCAAATCCTGG 57.995 52.381 4.76 4.37 42.95 4.45
638 662 3.716872 AGTGATATTCCCAACCCACTAGG 59.283 47.826 0.00 0.00 43.78 3.02
639 663 4.164221 ACAGTGATATTCCCAACCCACTAG 59.836 45.833 0.00 0.00 34.01 2.57
640 664 4.108570 ACAGTGATATTCCCAACCCACTA 58.891 43.478 0.00 0.00 34.01 2.74
641 665 2.919602 ACAGTGATATTCCCAACCCACT 59.080 45.455 0.00 0.00 35.51 4.00
642 666 3.279434 GACAGTGATATTCCCAACCCAC 58.721 50.000 0.00 0.00 0.00 4.61
643 667 2.241176 GGACAGTGATATTCCCAACCCA 59.759 50.000 0.00 0.00 0.00 4.51
644 668 2.241176 TGGACAGTGATATTCCCAACCC 59.759 50.000 0.00 0.00 0.00 4.11
645 669 3.644966 TGGACAGTGATATTCCCAACC 57.355 47.619 0.00 0.00 0.00 3.77
646 670 5.041191 AGATGGACAGTGATATTCCCAAC 57.959 43.478 0.00 0.00 0.00 3.77
647 671 6.409234 GGTTAGATGGACAGTGATATTCCCAA 60.409 42.308 0.00 0.00 0.00 4.12
648 672 5.071788 GGTTAGATGGACAGTGATATTCCCA 59.928 44.000 0.00 0.00 0.00 4.37
649 673 5.071788 TGGTTAGATGGACAGTGATATTCCC 59.928 44.000 0.00 0.00 0.00 3.97
650 674 6.174720 TGGTTAGATGGACAGTGATATTCC 57.825 41.667 0.00 0.00 0.00 3.01
651 675 7.675062 AGATGGTTAGATGGACAGTGATATTC 58.325 38.462 0.00 0.00 0.00 1.75
652 676 7.290948 TGAGATGGTTAGATGGACAGTGATATT 59.709 37.037 0.00 0.00 0.00 1.28
653 677 6.784473 TGAGATGGTTAGATGGACAGTGATAT 59.216 38.462 0.00 0.00 0.00 1.63
654 678 6.136155 TGAGATGGTTAGATGGACAGTGATA 58.864 40.000 0.00 0.00 0.00 2.15
655 679 4.964897 TGAGATGGTTAGATGGACAGTGAT 59.035 41.667 0.00 0.00 0.00 3.06
656 680 4.352893 TGAGATGGTTAGATGGACAGTGA 58.647 43.478 0.00 0.00 0.00 3.41
657 681 4.743057 TGAGATGGTTAGATGGACAGTG 57.257 45.455 0.00 0.00 0.00 3.66
658 682 4.080863 GGTTGAGATGGTTAGATGGACAGT 60.081 45.833 0.00 0.00 0.00 3.55
659 683 4.080919 TGGTTGAGATGGTTAGATGGACAG 60.081 45.833 0.00 0.00 0.00 3.51
660 684 3.843619 TGGTTGAGATGGTTAGATGGACA 59.156 43.478 0.00 0.00 0.00 4.02
661 685 4.192317 GTGGTTGAGATGGTTAGATGGAC 58.808 47.826 0.00 0.00 0.00 4.02
662 686 3.843619 TGTGGTTGAGATGGTTAGATGGA 59.156 43.478 0.00 0.00 0.00 3.41
663 687 4.194640 CTGTGGTTGAGATGGTTAGATGG 58.805 47.826 0.00 0.00 0.00 3.51
664 688 4.194640 CCTGTGGTTGAGATGGTTAGATG 58.805 47.826 0.00 0.00 0.00 2.90
665 689 3.846588 ACCTGTGGTTGAGATGGTTAGAT 59.153 43.478 0.00 0.00 27.29 1.98
666 690 3.248024 ACCTGTGGTTGAGATGGTTAGA 58.752 45.455 0.00 0.00 27.29 2.10
667 691 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
679 703 0.687354 AGAGCGAATCAACCTGTGGT 59.313 50.000 0.00 0.00 37.65 4.16
680 704 1.813513 AAGAGCGAATCAACCTGTGG 58.186 50.000 0.00 0.00 0.00 4.17
681 705 3.250762 TCAAAAGAGCGAATCAACCTGTG 59.749 43.478 0.00 0.00 0.00 3.66
682 706 3.476552 TCAAAAGAGCGAATCAACCTGT 58.523 40.909 0.00 0.00 0.00 4.00
683 707 3.499918 ACTCAAAAGAGCGAATCAACCTG 59.500 43.478 0.00 0.00 0.00 4.00
684 708 3.744660 ACTCAAAAGAGCGAATCAACCT 58.255 40.909 0.00 0.00 0.00 3.50
685 709 4.489679 AACTCAAAAGAGCGAATCAACC 57.510 40.909 0.00 0.00 0.00 3.77
686 710 8.507470 AAATAAACTCAAAAGAGCGAATCAAC 57.493 30.769 0.00 0.00 0.00 3.18
687 711 7.533900 CGAAATAAACTCAAAAGAGCGAATCAA 59.466 33.333 0.00 0.00 0.00 2.57
688 712 7.015289 CGAAATAAACTCAAAAGAGCGAATCA 58.985 34.615 0.00 0.00 0.00 2.57
689 713 6.022173 GCGAAATAAACTCAAAAGAGCGAATC 60.022 38.462 0.00 0.00 0.00 2.52
690 714 5.795441 GCGAAATAAACTCAAAAGAGCGAAT 59.205 36.000 0.00 0.00 0.00 3.34
691 715 5.144359 GCGAAATAAACTCAAAAGAGCGAA 58.856 37.500 0.00 0.00 0.00 4.70
692 716 4.212425 TGCGAAATAAACTCAAAAGAGCGA 59.788 37.500 0.00 0.00 0.00 4.93
693 717 4.463209 TGCGAAATAAACTCAAAAGAGCG 58.537 39.130 0.00 0.00 0.00 5.03
694 718 5.685511 TGTTGCGAAATAAACTCAAAAGAGC 59.314 36.000 0.00 0.00 0.00 4.09
695 719 7.858052 ATGTTGCGAAATAAACTCAAAAGAG 57.142 32.000 0.00 0.00 0.00 2.85
696 720 7.806014 GGTATGTTGCGAAATAAACTCAAAAGA 59.194 33.333 0.00 0.00 0.00 2.52
697 721 7.061789 GGGTATGTTGCGAAATAAACTCAAAAG 59.938 37.037 0.00 0.00 0.00 2.27
698 722 6.864165 GGGTATGTTGCGAAATAAACTCAAAA 59.136 34.615 0.00 0.00 0.00 2.44
699 723 6.016192 TGGGTATGTTGCGAAATAAACTCAAA 60.016 34.615 0.00 0.00 0.00 2.69
700 724 5.473846 TGGGTATGTTGCGAAATAAACTCAA 59.526 36.000 0.00 0.00 0.00 3.02
701 725 5.004448 TGGGTATGTTGCGAAATAAACTCA 58.996 37.500 0.00 0.00 0.00 3.41
702 726 5.554822 TGGGTATGTTGCGAAATAAACTC 57.445 39.130 0.00 0.00 0.00 3.01
703 727 5.968528 TTGGGTATGTTGCGAAATAAACT 57.031 34.783 0.00 0.00 0.00 2.66
712 736 1.243902 ACCACTTTGGGTATGTTGCG 58.756 50.000 0.00 0.00 43.37 4.85
770 802 2.273557 CCATTTGCTTACCTGCATTGC 58.726 47.619 0.46 0.46 42.96 3.56
850 882 3.308866 GCCACGCTACGAGTGAATATTTT 59.691 43.478 0.00 0.00 41.83 1.82
947 979 4.630505 CAGATGACAGGATGACAGACAAAG 59.369 45.833 0.00 0.00 45.14 2.77
1835 1874 2.368192 TCCCTCCGCCCCATCAAT 60.368 61.111 0.00 0.00 0.00 2.57
1939 1978 1.306825 ATGACTGGGCTCTCCTGCT 60.307 57.895 0.00 0.00 37.94 4.24
2087 2126 1.564348 TGGCACCTCTTCCCCTTATTC 59.436 52.381 0.00 0.00 0.00 1.75
2450 2490 2.917227 TCCAGTGAGCTCGGCACA 60.917 61.111 9.64 0.00 38.70 4.57
2495 2535 0.317436 CACTCTCTACGATGAGCGGC 60.317 60.000 0.00 0.00 46.49 6.53
2638 2698 2.352422 CTGCTAGGGCCTGTGCAA 59.648 61.111 27.53 16.31 40.13 4.08
2665 2725 8.335532 CCTAAATGGTTGAATTCACAGAACTA 57.664 34.615 7.89 1.90 0.00 2.24
2730 2791 7.436118 TCCATTGGAGTCATGAAAAGAAAAAG 58.564 34.615 0.00 0.00 0.00 2.27
2777 2838 5.008415 GTCTTCTCAATGCACATCCCATAAG 59.992 44.000 0.00 0.00 0.00 1.73
2784 2845 6.566187 GCATATCTGTCTTCTCAATGCACATC 60.566 42.308 0.00 0.00 38.44 3.06
2806 2867 2.449464 TGCTTCTGCCAAACTATGCAT 58.551 42.857 3.79 3.79 36.79 3.96
2847 2908 4.524316 TCTAGGTTAACAAGCTACGCAA 57.476 40.909 8.10 0.00 40.27 4.85
2891 2952 0.700564 TCTTGCCCAATCTGGAGCTT 59.299 50.000 0.00 0.00 40.96 3.74
2926 2987 0.754217 ATGGCCGAAAGCAGCATCAT 60.754 50.000 0.00 0.00 46.50 2.45
2938 2999 0.322098 CCTTTGGTGTGTATGGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
2945 3006 2.447443 TGTTTGTGCCTTTGGTGTGTA 58.553 42.857 0.00 0.00 0.00 2.90
3064 3125 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
3065 3126 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
3066 3127 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
3070 3131 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
3071 3132 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
3072 3133 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
3073 3134 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
3074 3135 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
3075 3136 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
3076 3137 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
3077 3138 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
3078 3139 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
3092 3153 8.771766 CGAATCTCAATGTAAGATCAATGACAT 58.228 33.333 0.00 0.00 32.29 3.06
3093 3154 7.765819 ACGAATCTCAATGTAAGATCAATGACA 59.234 33.333 0.00 0.00 32.29 3.58
3094 3155 8.060679 CACGAATCTCAATGTAAGATCAATGAC 58.939 37.037 0.00 0.00 32.29 3.06
3095 3156 7.765819 ACACGAATCTCAATGTAAGATCAATGA 59.234 33.333 0.00 0.00 32.29 2.57
3096 3157 7.913423 ACACGAATCTCAATGTAAGATCAATG 58.087 34.615 0.00 0.00 32.29 2.82
3097 3158 9.599866 TTACACGAATCTCAATGTAAGATCAAT 57.400 29.630 0.00 0.00 33.67 2.57
3098 3159 8.996024 TTACACGAATCTCAATGTAAGATCAA 57.004 30.769 0.00 0.00 33.67 2.57
3099 3160 8.996024 TTTACACGAATCTCAATGTAAGATCA 57.004 30.769 0.00 0.00 38.42 2.92
3156 3217 7.493971 GCACATCTAAGTGAGTGAATCAAGTAT 59.506 37.037 0.00 0.00 42.05 2.12
3157 3218 6.813649 GCACATCTAAGTGAGTGAATCAAGTA 59.186 38.462 0.00 0.00 42.05 2.24
3158 3219 5.641209 GCACATCTAAGTGAGTGAATCAAGT 59.359 40.000 0.00 0.00 42.05 3.16
3159 3220 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
3160 3221 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
3161 3222 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
3162 3223 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
3163 3224 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
3164 3225 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
3165 3226 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
3166 3227 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
3167 3228 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
3168 3229 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
3169 3230 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
3170 3231 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
3171 3232 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
3194 3255 5.478332 TGTGTCTAGGGCATATCTAGATGTG 59.522 44.000 21.61 21.61 43.25 3.21
3195 3256 5.478679 GTGTGTCTAGGGCATATCTAGATGT 59.521 44.000 15.79 5.75 43.25 3.06
3196 3257 5.105554 GGTGTGTCTAGGGCATATCTAGATG 60.106 48.000 15.79 2.00 43.25 2.90
3197 3258 5.020132 GGTGTGTCTAGGGCATATCTAGAT 58.980 45.833 10.73 10.73 43.25 1.98
3198 3259 4.408276 GGTGTGTCTAGGGCATATCTAGA 58.592 47.826 0.00 0.00 40.38 2.43
3199 3260 3.511934 GGGTGTGTCTAGGGCATATCTAG 59.488 52.174 0.00 0.00 36.46 2.43
3200 3261 3.142217 AGGGTGTGTCTAGGGCATATCTA 59.858 47.826 0.00 0.00 0.00 1.98
3201 3262 2.090494 AGGGTGTGTCTAGGGCATATCT 60.090 50.000 0.00 0.00 0.00 1.98
3202 3263 2.330216 AGGGTGTGTCTAGGGCATATC 58.670 52.381 0.00 0.00 0.00 1.63
3203 3264 2.496679 AGGGTGTGTCTAGGGCATAT 57.503 50.000 0.00 0.00 0.00 1.78
3204 3265 2.263895 AAGGGTGTGTCTAGGGCATA 57.736 50.000 0.00 0.00 0.00 3.14
3205 3266 1.372501 AAAGGGTGTGTCTAGGGCAT 58.627 50.000 0.00 0.00 0.00 4.40
3206 3267 1.145571 AAAAGGGTGTGTCTAGGGCA 58.854 50.000 0.00 0.00 0.00 5.36
3207 3268 2.160205 GAAAAAGGGTGTGTCTAGGGC 58.840 52.381 0.00 0.00 0.00 5.19
3208 3269 3.790089 AGAAAAAGGGTGTGTCTAGGG 57.210 47.619 0.00 0.00 0.00 3.53
3209 3270 5.221244 CCAAAAGAAAAAGGGTGTGTCTAGG 60.221 44.000 0.00 0.00 0.00 3.02
3210 3271 5.736207 GCCAAAAGAAAAAGGGTGTGTCTAG 60.736 44.000 0.00 0.00 0.00 2.43
3211 3272 4.098807 GCCAAAAGAAAAAGGGTGTGTCTA 59.901 41.667 0.00 0.00 0.00 2.59
3212 3273 3.118775 GCCAAAAGAAAAAGGGTGTGTCT 60.119 43.478 0.00 0.00 0.00 3.41
3213 3274 3.194861 GCCAAAAGAAAAAGGGTGTGTC 58.805 45.455 0.00 0.00 0.00 3.67
3214 3275 2.569404 TGCCAAAAGAAAAAGGGTGTGT 59.431 40.909 0.00 0.00 0.00 3.72
3215 3276 2.935849 GTGCCAAAAGAAAAAGGGTGTG 59.064 45.455 0.00 0.00 0.00 3.82
3216 3277 2.569404 TGTGCCAAAAGAAAAAGGGTGT 59.431 40.909 0.00 0.00 0.00 4.16
3217 3278 3.258971 TGTGCCAAAAGAAAAAGGGTG 57.741 42.857 0.00 0.00 0.00 4.61
3218 3279 3.990959 TTGTGCCAAAAGAAAAAGGGT 57.009 38.095 0.00 0.00 0.00 4.34
3219 3280 4.497842 GCATTTGTGCCAAAAGAAAAAGGG 60.498 41.667 4.76 0.00 0.00 3.95
3220 3281 4.096081 TGCATTTGTGCCAAAAGAAAAAGG 59.904 37.500 4.76 0.00 0.00 3.11
3221 3282 5.029654 GTGCATTTGTGCCAAAAGAAAAAG 58.970 37.500 0.00 0.00 0.00 2.27
3257 3318 3.194542 AGTCTACTGCAACTCTCATGTCC 59.805 47.826 0.00 0.00 0.00 4.02
3296 3491 3.559238 AAGGATTGCGTCAAACACATC 57.441 42.857 0.00 0.00 0.00 3.06
3302 3497 3.254657 CCACCTTAAAGGATTGCGTCAAA 59.745 43.478 0.00 0.00 37.67 2.69
3306 3501 2.304761 TCTCCACCTTAAAGGATTGCGT 59.695 45.455 0.00 0.00 37.67 5.24
3315 3510 5.970640 AGATTAGGTCCATCTCCACCTTAAA 59.029 40.000 0.00 0.00 40.35 1.52
3316 3511 5.366768 CAGATTAGGTCCATCTCCACCTTAA 59.633 44.000 0.00 0.00 40.35 1.85
3317 3512 4.901849 CAGATTAGGTCCATCTCCACCTTA 59.098 45.833 0.00 0.00 40.35 2.69
3391 3586 6.201997 GGCCACGATAAACTTGAAAAACAAAT 59.798 34.615 0.00 0.00 38.08 2.32
3421 3616 0.036732 ACCACGATGCCTTCACACAT 59.963 50.000 0.00 0.00 0.00 3.21
3484 3679 7.975616 TGATATAAAAAGAAAGCCACAATGCTC 59.024 33.333 0.00 0.00 41.80 4.26
3485 3680 7.839907 TGATATAAAAAGAAAGCCACAATGCT 58.160 30.769 0.00 0.00 45.43 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.