Multiple sequence alignment - TraesCS5A01G118400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G118400 chr5A 100.000 2225 0 0 1 2225 242946146 242948370 0.000000e+00 4109.0
1 TraesCS5A01G118400 chr5A 86.207 377 47 4 1657 2031 261908879 261909252 9.570000e-109 403.0
2 TraesCS5A01G118400 chr6A 96.439 1657 53 2 1 1657 273261887 273263537 0.000000e+00 2728.0
3 TraesCS5A01G118400 chr6A 93.899 967 49 2 700 1657 91792073 91791108 0.000000e+00 1450.0
4 TraesCS5A01G118400 chr6A 92.733 977 58 4 690 1655 52464113 52465087 0.000000e+00 1399.0
5 TraesCS5A01G118400 chr6A 91.828 930 62 5 740 1657 52419338 52420265 0.000000e+00 1284.0
6 TraesCS5A01G118400 chr6A 91.398 930 65 6 740 1657 52443916 52444842 0.000000e+00 1260.0
7 TraesCS5A01G118400 chr6A 92.287 363 10 3 1 354 584596065 584595712 1.190000e-137 499.0
8 TraesCS5A01G118400 chr6A 86.464 362 34 11 1660 2017 237732255 237731905 1.250000e-102 383.0
9 TraesCS5A01G118400 chr6A 79.444 180 32 5 1500 1677 381370943 381371119 3.000000e-24 122.0
10 TraesCS5A01G118400 chr2A 96.096 1665 46 4 1 1655 639984896 639986551 0.000000e+00 2697.0
11 TraesCS5A01G118400 chr2A 95.163 1592 55 4 76 1657 639976780 639978359 0.000000e+00 2494.0
12 TraesCS5A01G118400 chr2A 95.086 1099 42 2 76 1174 639969408 639970494 0.000000e+00 1720.0
13 TraesCS5A01G118400 chr2A 94.722 1099 46 2 76 1174 639973099 639974185 0.000000e+00 1698.0
14 TraesCS5A01G118400 chr2A 90.647 1283 102 9 1 1272 12206003 12204728 0.000000e+00 1688.0
15 TraesCS5A01G118400 chr4A 90.018 1683 137 13 1 1657 254866138 254864461 0.000000e+00 2148.0
16 TraesCS5A01G118400 chr4A 89.330 1687 137 20 1 1657 254874130 254872457 0.000000e+00 2078.0
17 TraesCS5A01G118400 chr4A 77.966 177 32 7 1500 1672 316370495 316370322 1.090000e-18 104.0
18 TraesCS5A01G118400 chr7D 84.997 1693 191 40 1 1657 412542661 412540996 0.000000e+00 1661.0
19 TraesCS5A01G118400 chr1B 91.086 1133 98 3 131 1261 200104054 200105185 0.000000e+00 1530.0
20 TraesCS5A01G118400 chr1B 90.060 332 25 4 1 332 200122799 200123122 7.340000e-115 424.0
21 TraesCS5A01G118400 chr6D 82.935 586 72 21 1660 2225 175709859 175709282 9.170000e-139 503.0
22 TraesCS5A01G118400 chr5B 93.448 290 19 0 1660 1949 153882241 153881952 4.390000e-117 431.0
23 TraesCS5A01G118400 chr5B 88.693 283 29 3 1944 2225 153869547 153869267 2.120000e-90 342.0
24 TraesCS5A01G118400 chr5D 86.133 375 45 6 1660 2031 159301936 159301566 4.450000e-107 398.0
25 TraesCS5A01G118400 chr5D 78.599 257 39 16 1972 2219 52072238 52071989 2.960000e-34 156.0
26 TraesCS5A01G118400 chr3B 86.096 374 43 8 1 369 449451292 449451661 5.760000e-106 394.0
27 TraesCS5A01G118400 chr3B 82.850 379 49 13 1657 2031 399501375 399501741 2.130000e-85 326.0
28 TraesCS5A01G118400 chr4B 85.440 364 38 9 1 360 291274224 291273872 4.520000e-97 364.0
29 TraesCS5A01G118400 chr3D 82.768 383 52 13 1660 2040 320640803 320640433 1.650000e-86 329.0
30 TraesCS5A01G118400 chr3D 77.457 173 32 7 1500 1668 123510848 123511017 1.820000e-16 97.1
31 TraesCS5A01G118400 chr3D 75.269 186 37 9 1500 1682 142873398 142873577 1.830000e-11 80.5
32 TraesCS5A01G118400 chr1D 82.620 374 50 13 1660 2025 394063117 394062751 1.280000e-82 316.0
33 TraesCS5A01G118400 chr1D 76.329 583 92 36 1657 2225 140372845 140373395 1.010000e-68 270.0
34 TraesCS5A01G118400 chr1D 77.534 365 57 17 1851 2208 164288706 164288360 1.740000e-46 196.0
35 TraesCS5A01G118400 chr2D 82.173 359 54 9 1657 2014 239737968 239738317 1.290000e-77 300.0
36 TraesCS5A01G118400 chr2D 76.786 168 32 7 1503 1668 590174288 590174126 1.090000e-13 87.9
37 TraesCS5A01G118400 chr3A 74.688 320 55 18 1371 1673 733856485 733856795 3.880000e-23 119.0
38 TraesCS5A01G118400 chr7A 72.540 437 83 28 1258 1671 339287007 339286585 8.400000e-20 108.0
39 TraesCS5A01G118400 chr7A 77.966 177 28 8 1500 1670 367098219 367098390 1.410000e-17 100.0
40 TraesCS5A01G118400 chr2B 76.744 172 36 4 1500 1669 175339558 175339389 2.350000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G118400 chr5A 242946146 242948370 2224 False 4109.000000 4109 100.000000 1 2225 1 chr5A.!!$F1 2224
1 TraesCS5A01G118400 chr6A 273261887 273263537 1650 False 2728.000000 2728 96.439000 1 1657 1 chr6A.!!$F4 1656
2 TraesCS5A01G118400 chr6A 91791108 91792073 965 True 1450.000000 1450 93.899000 700 1657 1 chr6A.!!$R1 957
3 TraesCS5A01G118400 chr6A 52464113 52465087 974 False 1399.000000 1399 92.733000 690 1655 1 chr6A.!!$F3 965
4 TraesCS5A01G118400 chr6A 52419338 52420265 927 False 1284.000000 1284 91.828000 740 1657 1 chr6A.!!$F1 917
5 TraesCS5A01G118400 chr6A 52443916 52444842 926 False 1260.000000 1260 91.398000 740 1657 1 chr6A.!!$F2 917
6 TraesCS5A01G118400 chr2A 639984896 639986551 1655 False 2697.000000 2697 96.096000 1 1655 1 chr2A.!!$F1 1654
7 TraesCS5A01G118400 chr2A 639969408 639978359 8951 False 1970.666667 2494 94.990333 76 1657 3 chr2A.!!$F2 1581
8 TraesCS5A01G118400 chr2A 12204728 12206003 1275 True 1688.000000 1688 90.647000 1 1272 1 chr2A.!!$R1 1271
9 TraesCS5A01G118400 chr4A 254864461 254866138 1677 True 2148.000000 2148 90.018000 1 1657 1 chr4A.!!$R1 1656
10 TraesCS5A01G118400 chr4A 254872457 254874130 1673 True 2078.000000 2078 89.330000 1 1657 1 chr4A.!!$R2 1656
11 TraesCS5A01G118400 chr7D 412540996 412542661 1665 True 1661.000000 1661 84.997000 1 1657 1 chr7D.!!$R1 1656
12 TraesCS5A01G118400 chr1B 200104054 200105185 1131 False 1530.000000 1530 91.086000 131 1261 1 chr1B.!!$F1 1130
13 TraesCS5A01G118400 chr6D 175709282 175709859 577 True 503.000000 503 82.935000 1660 2225 1 chr6D.!!$R1 565
14 TraesCS5A01G118400 chr1D 140372845 140373395 550 False 270.000000 270 76.329000 1657 2225 1 chr1D.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 4376 0.68028 ACTAGAGGCACGTCGTCCAT 60.68 55.0 13.85 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 9409 0.976641 AGCACGAAGAACATGAGGGA 59.023 50.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 3824 1.301637 CCAGCCGATCACACACACA 60.302 57.895 0.00 0.00 0.00 3.72
124 3825 1.568612 CCAGCCGATCACACACACAC 61.569 60.000 0.00 0.00 0.00 3.82
125 3826 0.879839 CAGCCGATCACACACACACA 60.880 55.000 0.00 0.00 0.00 3.72
126 3827 0.880278 AGCCGATCACACACACACAC 60.880 55.000 0.00 0.00 0.00 3.82
127 3828 1.852648 CCGATCACACACACACACG 59.147 57.895 0.00 0.00 0.00 4.49
128 3829 1.201578 CGATCACACACACACACGC 59.798 57.895 0.00 0.00 0.00 5.34
319 4039 4.624125 GCAGGTAGTAGAAAGAGGCAACAT 60.624 45.833 0.00 0.00 41.41 2.71
528 4251 1.885887 GGTTGGAGCATGCTGTTTACA 59.114 47.619 28.27 12.85 0.00 2.41
636 4359 1.889454 CTCAGAGAGCTCGGCAACT 59.111 57.895 8.37 1.59 34.09 3.16
653 4376 0.680280 ACTAGAGGCACGTCGTCCAT 60.680 55.000 13.85 0.00 0.00 3.41
744 8148 3.749064 GTCGAGGAGCTCACCGCA 61.749 66.667 17.19 5.70 42.61 5.69
771 8175 1.971695 GAAAGGCCGGTGGAAGGTG 60.972 63.158 1.90 0.00 0.00 4.00
1038 8443 2.045885 TGAGATGAGGGGTCTAGGGTTT 59.954 50.000 0.00 0.00 0.00 3.27
1045 8450 2.113052 AGGGGTCTAGGGTTTGAGTACA 59.887 50.000 0.00 0.00 0.00 2.90
1657 9090 2.519377 TAATTATCCGGGCGTCACAG 57.481 50.000 0.00 0.00 0.00 3.66
1658 9091 0.179056 AATTATCCGGGCGTCACAGG 60.179 55.000 0.00 0.00 0.00 4.00
1681 9114 1.419387 AGCTCATGTATCTCCCCTTGC 59.581 52.381 0.00 0.00 0.00 4.01
1699 9134 6.427350 CCTTGCGGGATTTCTCTTGAGAGA 62.427 50.000 6.62 6.62 42.64 3.10
1700 9135 7.654770 CCTTGCGGGATTTCTCTTGAGAGAT 62.655 48.000 11.25 5.30 43.28 2.75
1717 9152 7.868792 TGAGAGATAGAAGAATCCATTGGAT 57.131 36.000 12.62 12.62 45.46 3.41
1718 9153 7.905265 TGAGAGATAGAAGAATCCATTGGATC 58.095 38.462 18.45 11.76 42.27 3.36
1830 9267 8.927675 TCTCCTAGAGATTTAGATGAACTACC 57.072 38.462 0.00 0.00 33.35 3.18
1871 9308 5.242393 CCTTGTTGTTCTTGGATCTTGATGT 59.758 40.000 0.00 0.00 0.00 3.06
1873 9310 7.040478 CCTTGTTGTTCTTGGATCTTGATGTAA 60.040 37.037 0.00 0.00 0.00 2.41
1904 9355 4.623932 TGCTTGTGATTTGAGGAGTACT 57.376 40.909 0.00 0.00 0.00 2.73
1905 9356 4.973168 TGCTTGTGATTTGAGGAGTACTT 58.027 39.130 0.00 0.00 0.00 2.24
1910 9361 3.935828 GTGATTTGAGGAGTACTTGGAGC 59.064 47.826 0.00 0.00 0.00 4.70
1957 9408 6.410222 TCCCCTTTGGTTTCTCCATATTTA 57.590 37.500 0.00 0.00 46.60 1.40
1958 9409 6.992235 TCCCCTTTGGTTTCTCCATATTTAT 58.008 36.000 0.00 0.00 46.60 1.40
1961 9412 6.267699 CCCTTTGGTTTCTCCATATTTATCCC 59.732 42.308 0.00 0.00 46.60 3.85
1963 9414 7.231519 CCTTTGGTTTCTCCATATTTATCCCTC 59.768 40.741 0.00 0.00 46.60 4.30
1964 9415 6.840090 TGGTTTCTCCATATTTATCCCTCA 57.160 37.500 0.00 0.00 41.93 3.86
1976 9427 2.029838 ATCCCTCATGTTCTTCGTGC 57.970 50.000 0.00 0.00 33.44 5.34
1983 9442 1.734465 CATGTTCTTCGTGCTTCTCCC 59.266 52.381 0.00 0.00 0.00 4.30
2018 9487 3.124921 CGTGAACATCGGGCCACC 61.125 66.667 4.39 0.00 0.00 4.61
2025 9494 2.042261 ATCGGGCCACCTAGGGTT 59.958 61.111 14.81 0.00 38.09 4.11
2032 9502 1.250840 GCCACCTAGGGTTTTGCCTG 61.251 60.000 14.81 0.00 38.09 4.85
2036 9506 1.202891 ACCTAGGGTTTTGCCTGACAC 60.203 52.381 14.81 0.00 37.43 3.67
2055 9527 3.245016 ACACCATCTTGGATCAGAGCAAA 60.245 43.478 0.00 0.00 40.96 3.68
2059 9531 4.461781 CCATCTTGGATCAGAGCAAAGTTT 59.538 41.667 2.64 0.00 40.96 2.66
2060 9532 5.392811 CCATCTTGGATCAGAGCAAAGTTTC 60.393 44.000 2.64 0.00 40.96 2.78
2062 9534 2.795329 TGGATCAGAGCAAAGTTTCCC 58.205 47.619 0.00 0.00 0.00 3.97
2063 9535 2.108075 TGGATCAGAGCAAAGTTTCCCA 59.892 45.455 0.00 0.00 0.00 4.37
2064 9536 3.245371 TGGATCAGAGCAAAGTTTCCCAT 60.245 43.478 0.00 0.00 0.00 4.00
2065 9537 3.129988 GGATCAGAGCAAAGTTTCCCATG 59.870 47.826 0.00 0.00 0.00 3.66
2077 9549 4.951603 AGTTTCCCATGAATTTGGATCCT 58.048 39.130 14.23 0.00 39.25 3.24
2078 9550 6.091076 AGTTTCCCATGAATTTGGATCCTA 57.909 37.500 14.23 1.56 39.25 2.94
2079 9551 6.686544 AGTTTCCCATGAATTTGGATCCTAT 58.313 36.000 14.23 3.64 39.25 2.57
2106 9582 7.041303 CCCCACTTTCTAGTCTTTAGTTTGAAC 60.041 40.741 0.00 0.00 30.26 3.18
2117 9593 6.546403 GTCTTTAGTTTGAACTTTTCTCCCCT 59.454 38.462 1.20 0.00 40.37 4.79
2120 9596 7.996098 TTAGTTTGAACTTTTCTCCCCTATG 57.004 36.000 1.20 0.00 40.37 2.23
2122 9598 6.373759 AGTTTGAACTTTTCTCCCCTATGTT 58.626 36.000 0.00 0.00 35.21 2.71
2123 9599 6.265422 AGTTTGAACTTTTCTCCCCTATGTTG 59.735 38.462 0.00 0.00 35.21 3.33
2135 9611 5.398236 TCCCCTATGTTGAAAATTTCCACA 58.602 37.500 13.77 13.77 39.30 4.17
2137 9613 6.014669 TCCCCTATGTTGAAAATTTCCACAAG 60.015 38.462 15.08 12.90 38.58 3.16
2139 9615 7.092716 CCCTATGTTGAAAATTTCCACAAGAG 58.907 38.462 15.08 14.19 38.58 2.85
2141 9617 8.359642 CCTATGTTGAAAATTTCCACAAGAGAA 58.640 33.333 15.08 1.29 38.58 2.87
2152 9628 2.224042 CCACAAGAGAAAGCCCCAAAAC 60.224 50.000 0.00 0.00 0.00 2.43
2161 9637 4.164030 AGAAAGCCCCAAAACATTTCTTGT 59.836 37.500 0.00 0.00 36.98 3.16
2192 9668 5.581605 TGCTCTTGTGAGTTTTTGTTGATC 58.418 37.500 0.00 0.00 42.13 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 3824 1.740296 GGGTATTCTGTGCGCGTGT 60.740 57.895 8.43 0.00 0.00 4.49
124 3825 1.089481 ATGGGTATTCTGTGCGCGTG 61.089 55.000 8.43 0.00 0.00 5.34
125 3826 1.089481 CATGGGTATTCTGTGCGCGT 61.089 55.000 8.43 0.00 0.00 6.01
126 3827 1.643292 CATGGGTATTCTGTGCGCG 59.357 57.895 0.00 0.00 0.00 6.86
127 3828 0.748005 ACCATGGGTATTCTGTGCGC 60.748 55.000 18.09 0.00 32.11 6.09
128 3829 1.016627 CACCATGGGTATTCTGTGCG 58.983 55.000 18.09 0.00 32.11 5.34
207 3916 6.006449 AGTTGATGCTCTTTCCTATTGTTGT 58.994 36.000 0.00 0.00 0.00 3.32
319 4039 1.205655 CTTGCTGCTACCTGCTACTGA 59.794 52.381 0.00 0.00 43.37 3.41
408 4128 1.593209 GTTCGGTCGCACCTTGTCA 60.593 57.895 4.21 0.00 35.66 3.58
636 4359 0.963856 ACATGGACGACGTGCCTCTA 60.964 55.000 17.21 0.00 39.81 2.43
653 4376 1.422662 CCGAATCTCGTCGTCGACA 59.577 57.895 24.13 10.99 41.35 4.35
744 8148 2.282462 CGGCCTTTCTTGTGCCCT 60.282 61.111 0.00 0.00 42.29 5.19
874 8278 5.873712 CGTACTCCTCTACTTCTTCTACACA 59.126 44.000 0.00 0.00 0.00 3.72
1038 8443 0.034380 CCTCCTCGACCCTGTACTCA 60.034 60.000 0.00 0.00 0.00 3.41
1045 8450 1.962570 ATAAGGCCCTCCTCGACCCT 61.963 60.000 0.00 0.00 43.40 4.34
1300 8713 8.364142 TGCAATAGTAATTAAGGTGCAAGTTTT 58.636 29.630 10.34 0.00 0.00 2.43
1657 9090 3.243724 AGGGGAGATACATGAGCTAACC 58.756 50.000 0.00 0.00 0.00 2.85
1658 9091 4.636249 CAAGGGGAGATACATGAGCTAAC 58.364 47.826 0.00 0.00 0.00 2.34
1699 9134 7.460071 CCTTGAGATCCAATGGATTCTTCTAT 58.540 38.462 16.90 0.00 43.27 1.98
1700 9135 6.689946 GCCTTGAGATCCAATGGATTCTTCTA 60.690 42.308 16.90 10.32 43.27 2.10
1707 9142 2.107901 GAGGCCTTGAGATCCAATGGAT 59.892 50.000 15.71 15.71 46.28 3.41
1717 9152 2.094100 CTCCATAGGAGGCCTTGAGA 57.906 55.000 6.77 0.00 45.43 3.27
1778 9215 3.944015 GGTCTTGATGATTCACTTGAGGG 59.056 47.826 0.00 0.00 0.00 4.30
1838 9275 7.610580 TCCAAGAACAACAAGGGAAATAAAT 57.389 32.000 0.00 0.00 0.00 1.40
1871 9308 8.389779 TCAAATCACAAGCAATACAAGAGTTA 57.610 30.769 0.00 0.00 0.00 2.24
1873 9310 6.072286 CCTCAAATCACAAGCAATACAAGAGT 60.072 38.462 0.00 0.00 0.00 3.24
1904 9355 2.559698 TTGGACAAGATTCGCTCCAA 57.440 45.000 8.04 8.04 39.90 3.53
1905 9356 2.787473 ATTGGACAAGATTCGCTCCA 57.213 45.000 0.00 0.00 0.00 3.86
1910 9361 6.727824 AAACACTCTATTGGACAAGATTCG 57.272 37.500 0.00 0.00 0.00 3.34
1957 9408 1.556911 AGCACGAAGAACATGAGGGAT 59.443 47.619 0.00 0.00 0.00 3.85
1958 9409 0.976641 AGCACGAAGAACATGAGGGA 59.023 50.000 0.00 0.00 0.00 4.20
1961 9412 2.670414 GGAGAAGCACGAAGAACATGAG 59.330 50.000 0.00 0.00 0.00 2.90
1963 9414 1.734465 GGGAGAAGCACGAAGAACATG 59.266 52.381 0.00 0.00 0.00 3.21
1964 9415 1.625818 AGGGAGAAGCACGAAGAACAT 59.374 47.619 0.00 0.00 0.00 2.71
1976 9427 1.488393 GGAGGTGGATTCAGGGAGAAG 59.512 57.143 0.00 0.00 40.15 2.85
1983 9442 2.679837 CACGAATTGGAGGTGGATTCAG 59.320 50.000 0.00 0.00 31.69 3.02
2018 9487 1.202879 TGGTGTCAGGCAAAACCCTAG 60.203 52.381 0.00 0.00 40.58 3.02
2025 9494 1.144708 TCCAAGATGGTGTCAGGCAAA 59.855 47.619 0.00 0.00 39.03 3.68
2032 9502 2.093288 TGCTCTGATCCAAGATGGTGTC 60.093 50.000 0.00 0.00 39.03 3.67
2036 9506 3.618351 ACTTTGCTCTGATCCAAGATGG 58.382 45.455 0.08 0.00 39.43 3.51
2055 9527 4.951603 AGGATCCAAATTCATGGGAAACT 58.048 39.130 15.82 0.00 41.05 2.66
2077 9549 8.319146 CAAACTAAAGACTAGAAAGTGGGGATA 58.681 37.037 0.00 0.00 35.56 2.59
2078 9550 6.954352 AACTAAAGACTAGAAAGTGGGGAT 57.046 37.500 0.00 0.00 35.56 3.85
2079 9551 6.328148 TCAAACTAAAGACTAGAAAGTGGGGA 59.672 38.462 0.00 0.00 35.56 4.81
2106 9582 7.819415 GGAAATTTTCAACATAGGGGAGAAAAG 59.181 37.037 11.09 0.00 40.28 2.27
2117 9593 9.748708 CTTTCTCTTGTGGAAATTTTCAACATA 57.251 29.630 17.87 9.98 42.87 2.29
2120 9596 6.018751 GGCTTTCTCTTGTGGAAATTTTCAAC 60.019 38.462 9.36 9.36 34.07 3.18
2122 9598 5.453198 GGGCTTTCTCTTGTGGAAATTTTCA 60.453 40.000 11.09 0.00 33.12 2.69
2123 9599 4.991056 GGGCTTTCTCTTGTGGAAATTTTC 59.009 41.667 0.24 0.24 33.12 2.29
2135 9611 4.655649 AGAAATGTTTTGGGGCTTTCTCTT 59.344 37.500 0.00 0.00 32.23 2.85
2137 9613 4.607293 AGAAATGTTTTGGGGCTTTCTC 57.393 40.909 0.00 0.00 32.23 2.87
2139 9615 4.273235 CACAAGAAATGTTTTGGGGCTTTC 59.727 41.667 0.00 0.00 41.46 2.62
2141 9617 3.454082 TCACAAGAAATGTTTTGGGGCTT 59.546 39.130 0.00 0.00 41.46 4.35
2152 9628 6.866770 ACAAGAGCATCAAATCACAAGAAATG 59.133 34.615 0.00 0.00 37.82 2.32
2161 9637 6.395426 AAAACTCACAAGAGCATCAAATCA 57.605 33.333 0.00 0.00 46.09 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.