Multiple sequence alignment - TraesCS5A01G118200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G118200 chr5A 100.000 8815 0 0 1 8815 242539234 242530420 0.000000e+00 16279.0
1 TraesCS5A01G118200 chr5A 86.957 391 44 4 5 388 412455291 412454901 4.890000e-117 433.0
2 TraesCS5A01G118200 chr5A 83.632 391 46 13 6 392 32512161 32511785 1.410000e-92 351.0
3 TraesCS5A01G118200 chr5A 80.890 382 54 16 8 386 236805726 236806091 5.210000e-72 283.0
4 TraesCS5A01G118200 chr5A 85.437 103 11 3 4144 4242 432419015 432418913 4.350000e-18 104.0
5 TraesCS5A01G118200 chr5D 93.513 3453 150 29 2050 5432 161459207 161455759 0.000000e+00 5068.0
6 TraesCS5A01G118200 chr5D 95.187 1953 85 7 1 1948 161461179 161459231 0.000000e+00 3077.0
7 TraesCS5A01G118200 chr5D 92.667 1650 101 10 5426 7061 161451582 161449939 0.000000e+00 2359.0
8 TraesCS5A01G118200 chr5D 91.584 1711 106 20 7112 8815 161449946 161448267 0.000000e+00 2327.0
9 TraesCS5A01G118200 chr5B 96.900 2000 48 9 1784 3773 177641744 177643739 0.000000e+00 3338.0
10 TraesCS5A01G118200 chr5B 94.625 1786 81 8 1 1782 177639853 177641627 0.000000e+00 2752.0
11 TraesCS5A01G118200 chr5B 89.284 1885 142 21 4133 5965 177644697 177646573 0.000000e+00 2307.0
12 TraesCS5A01G118200 chr5B 87.633 1124 107 14 7647 8747 177647408 177648522 0.000000e+00 1277.0
13 TraesCS5A01G118200 chr5B 96.034 353 14 0 3731 4083 177643742 177644094 7.680000e-160 575.0
14 TraesCS5A01G118200 chr5B 87.317 410 35 10 7114 7521 177646634 177647028 3.750000e-123 453.0
15 TraesCS5A01G118200 chr5B 87.168 226 23 2 4556 4775 461609440 461609215 1.470000e-62 252.0
16 TraesCS5A01G118200 chr5B 75.328 381 50 27 8107 8465 707206004 707206362 9.230000e-30 143.0
17 TraesCS5A01G118200 chr5B 89.655 58 5 1 8094 8150 440517212 440517269 1.230000e-08 73.1
18 TraesCS5A01G118200 chr4B 86.264 364 35 8 28 388 285587323 285586972 1.800000e-101 381.0
19 TraesCS5A01G118200 chr4B 100.000 35 0 0 8106 8140 624411695 624411661 2.050000e-06 65.8
20 TraesCS5A01G118200 chr3D 85.156 384 43 10 5 385 272292440 272292068 1.800000e-101 381.0
21 TraesCS5A01G118200 chr3D 83.149 362 44 14 38 388 223480746 223481101 1.850000e-81 315.0
22 TraesCS5A01G118200 chr3D 86.099 223 25 2 4556 4772 363252986 363253208 1.480000e-57 235.0
23 TraesCS5A01G118200 chr3D 90.152 132 13 0 8684 8815 210340628 210340759 1.180000e-38 172.0
24 TraesCS5A01G118200 chr3D 90.152 132 13 0 8684 8815 277187922 277188053 1.180000e-38 172.0
25 TraesCS5A01G118200 chr4A 85.000 360 34 16 35 388 365622854 365622509 1.820000e-91 348.0
26 TraesCS5A01G118200 chr4A 90.769 130 12 0 8686 8815 145058425 145058296 3.270000e-39 174.0
27 TraesCS5A01G118200 chr3A 84.254 362 41 15 41 391 283089185 283088829 1.100000e-88 339.0
28 TraesCS5A01G118200 chr3A 76.389 144 20 9 4154 4284 654356556 654356414 2.050000e-06 65.8
29 TraesCS5A01G118200 chr3B 82.320 362 48 14 41 391 317605207 317604851 5.170000e-77 300.0
30 TraesCS5A01G118200 chr3B 86.275 102 11 2 4144 4242 733070800 733070901 3.370000e-19 108.0
31 TraesCS5A01G118200 chr6D 81.522 368 53 14 2 362 63041913 63042272 1.120000e-73 289.0
32 TraesCS5A01G118200 chr6D 88.496 226 20 2 4556 4775 464870460 464870235 1.460000e-67 268.0
33 TraesCS5A01G118200 chr6D 90.152 132 13 0 8684 8815 145268775 145268906 1.180000e-38 172.0
34 TraesCS5A01G118200 chr6D 82.787 122 13 3 8164 8285 387996301 387996414 1.570000e-17 102.0
35 TraesCS5A01G118200 chr6D 92.683 41 2 1 8098 8137 69024292 69024252 3.440000e-04 58.4
36 TraesCS5A01G118200 chr7A 88.341 223 20 2 4556 4772 81829847 81830069 6.790000e-66 263.0
37 TraesCS5A01G118200 chr2B 86.547 223 24 2 4556 4772 662689967 662690189 3.180000e-59 241.0
38 TraesCS5A01G118200 chr2B 87.324 142 16 1 8100 8239 189021962 189021821 2.550000e-35 161.0
39 TraesCS5A01G118200 chr2B 88.462 104 8 3 4144 4243 23856271 23856168 1.200000e-23 122.0
40 TraesCS5A01G118200 chr2B 83.495 103 15 2 4148 4248 376480034 376479932 2.620000e-15 95.3
41 TraesCS5A01G118200 chr7B 85.841 226 26 2 4556 4775 605312927 605312702 1.480000e-57 235.0
42 TraesCS5A01G118200 chr7B 84.536 97 8 7 4146 4240 240925462 240925553 1.220000e-13 89.8
43 TraesCS5A01G118200 chr7B 77.124 153 20 10 4146 4284 706231361 706231512 3.410000e-09 75.0
44 TraesCS5A01G118200 chr7B 94.872 39 1 1 8100 8137 182133966 182134004 9.560000e-05 60.2
45 TraesCS5A01G118200 chr7D 83.146 267 33 5 5 270 345677206 345676951 5.320000e-57 233.0
46 TraesCS5A01G118200 chr7D 90.152 132 13 0 8684 8815 265097242 265097373 1.180000e-38 172.0
47 TraesCS5A01G118200 chr1D 86.111 216 25 1 4565 4775 418739040 418738825 2.480000e-55 228.0
48 TraesCS5A01G118200 chr1D 90.152 132 13 0 8684 8815 121050988 121051119 1.180000e-38 172.0
49 TraesCS5A01G118200 chr1D 90.152 132 13 0 8684 8815 320130309 320130440 1.180000e-38 172.0
50 TraesCS5A01G118200 chr1D 87.879 99 10 2 4146 4243 13502719 13502622 2.010000e-21 115.0
51 TraesCS5A01G118200 chr1B 90.152 132 13 0 8684 8815 110446028 110445897 1.180000e-38 172.0
52 TraesCS5A01G118200 chr1B 88.406 69 3 1 4709 4772 66946335 66946403 2.640000e-10 78.7
53 TraesCS5A01G118200 chr1B 95.238 42 2 0 8097 8138 337589061 337589102 5.710000e-07 67.6
54 TraesCS5A01G118200 chr2D 78.500 200 37 6 6646 6842 370209467 370209271 9.290000e-25 126.0
55 TraesCS5A01G118200 chr2D 85.714 105 13 2 4146 4248 200260205 200260309 9.360000e-20 110.0
56 TraesCS5A01G118200 chr2D 82.787 122 13 3 8164 8285 645087326 645087439 1.570000e-17 102.0
57 TraesCS5A01G118200 chr2D 92.857 42 1 2 8098 8137 95195513 95195554 9.560000e-05 60.2
58 TraesCS5A01G118200 chr4D 84.615 130 11 6 4116 4243 508934007 508933885 4.320000e-23 121.0
59 TraesCS5A01G118200 chr4D 82.787 122 13 3 8164 8285 346288861 346288974 1.570000e-17 102.0
60 TraesCS5A01G118200 chr6B 86.765 68 8 1 4146 4212 714408189 714408256 3.410000e-09 75.0
61 TraesCS5A01G118200 chr1A 77.344 128 18 8 4145 4269 546177904 546178023 2.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G118200 chr5A 242530420 242539234 8814 True 16279.000000 16279 100.0000 1 8815 1 chr5A.!!$R2 8814
1 TraesCS5A01G118200 chr5D 161455759 161461179 5420 True 4072.500000 5068 94.3500 1 5432 2 chr5D.!!$R2 5431
2 TraesCS5A01G118200 chr5D 161448267 161451582 3315 True 2343.000000 2359 92.1255 5426 8815 2 chr5D.!!$R1 3389
3 TraesCS5A01G118200 chr5B 177639853 177648522 8669 False 1783.666667 3338 91.9655 1 8747 6 chr5B.!!$F3 8746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 446 0.110956 CTACATGCATAGCGCTTGCG 60.111 55.0 27.40 20.41 46.97 4.85 F
1759 1766 0.321034 AAGTTTAGACGGTTCCGGGC 60.321 55.0 15.66 7.16 0.00 6.13 F
2604 2726 0.249868 TGTCAGACAACGCCAAGGAG 60.250 55.0 0.00 0.00 0.00 3.69 F
4459 5239 0.250513 ATGCGGTTGGAAGAGAGACC 59.749 55.0 0.00 0.00 0.00 3.85 F
4850 5631 0.106519 CCCTCCTATGGGCACTTTGG 60.107 60.0 0.00 0.00 40.84 3.28 F
5621 6421 0.030235 CATCGGCGATGTCGGAACTA 59.970 55.0 35.12 0.00 40.23 2.24 F
5751 6551 0.035725 TGCCTCGACCTCTTACTCGA 60.036 55.0 0.00 0.00 37.37 4.04 F
6099 6900 0.182299 GGAAGGGGAAGCAGATGGAG 59.818 60.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2149 2.608090 TCGCTAGATCGAGTGTGTACAG 59.392 50.0 14.89 0.0 34.09 2.74 R
3666 3792 1.180456 TTGCCTCCCGTGTCGTCTTA 61.180 55.0 0.00 0.0 0.00 2.10 R
4481 5261 0.176219 ATGGGCGCAATTGTCCATTG 59.824 50.0 10.83 0.0 44.79 2.82 R
5603 6403 0.030369 GTAGTTCCGACATCGCCGAT 59.970 55.0 0.00 0.0 38.18 4.18 R
6425 7227 0.179045 CTCCCTAAACATCTGGGCGG 60.179 60.0 0.00 0.0 40.69 6.13 R
7188 7995 0.108585 ACCTCACAACCATCAACGCT 59.891 50.0 0.00 0.0 0.00 5.07 R
7189 7996 0.238289 CACCTCACAACCATCAACGC 59.762 55.0 0.00 0.0 0.00 4.84 R
7991 9088 0.035152 ACCTCCATGATCGCTTTGCA 60.035 50.0 0.00 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 125 3.611025 AGACCTCCTAGGAGAAGATGG 57.389 52.381 36.08 22.96 44.53 3.51
148 150 4.551215 AGTGGATATCAAGACCTCCTCT 57.449 45.455 4.83 0.00 0.00 3.69
331 333 5.359860 CCCCTTTGTGTTCTTGTAGTTCTTT 59.640 40.000 0.00 0.00 0.00 2.52
424 426 1.395826 GCAGCTAGGGACGTGAGGAT 61.396 60.000 0.00 0.00 0.00 3.24
429 431 2.748798 GCTAGGGACGTGAGGATCTACA 60.749 54.545 0.00 0.00 34.92 2.74
434 436 2.036475 GGACGTGAGGATCTACATGCAT 59.964 50.000 0.00 0.00 34.92 3.96
444 446 0.110956 CTACATGCATAGCGCTTGCG 60.111 55.000 27.40 20.41 46.97 4.85
500 502 4.860881 CTGGAGGAGGCGGGGCTA 62.861 72.222 0.00 0.00 0.00 3.93
510 512 2.134287 GCGGGGCTAGAGTCCATCA 61.134 63.158 1.95 0.00 42.93 3.07
527 529 0.901827 TCAATCTAAGCTCACGGGCA 59.098 50.000 0.00 0.00 34.17 5.36
612 614 0.666913 TCGAGGCTATTGGTAGTCGC 59.333 55.000 0.00 0.00 37.62 5.19
620 622 1.324740 ATTGGTAGTCGCCGGTGCTA 61.325 55.000 11.05 12.30 34.43 3.49
635 637 1.326951 TGCTATAGTGGCCACGAGCA 61.327 55.000 37.87 37.87 46.50 4.26
713 718 6.764560 GGTCCGTAAAATTCTTATGCTCCTAA 59.235 38.462 0.00 0.00 0.00 2.69
910 915 3.454447 ACAACTCATCCGTTCCATCCATA 59.546 43.478 0.00 0.00 0.00 2.74
955 960 2.125912 CGGAAGCTAGCACGCACT 60.126 61.111 18.83 0.00 0.00 4.40
1128 1133 0.668535 TGTCCTCAGTCACTGACACG 59.331 55.000 2.36 0.00 35.39 4.49
1280 1285 4.465512 GTGCATGGACGCGGCAAG 62.466 66.667 17.00 3.13 39.57 4.01
1600 1606 7.086230 TCTTCGTTTGTTTTTGGCTAGTTTA 57.914 32.000 0.00 0.00 0.00 2.01
1759 1766 0.321034 AAGTTTAGACGGTTCCGGGC 60.321 55.000 15.66 7.16 0.00 6.13
1862 1983 7.766278 GGGCTATGTGGTTCAAGATGTATATAG 59.234 40.741 0.00 0.00 0.00 1.31
1978 2099 2.925563 GCTACTTTTTGTCATGCCATGC 59.074 45.455 0.00 0.00 0.00 4.06
1998 2119 7.202526 CCATGCAAAATGTAGAATCCGTTATT 58.797 34.615 0.00 0.00 0.00 1.40
2000 2121 9.086336 CATGCAAAATGTAGAATCCGTTATTTT 57.914 29.630 0.00 0.00 0.00 1.82
2002 2123 7.757624 TGCAAAATGTAGAATCCGTTATTTTCC 59.242 33.333 0.00 0.00 0.00 3.13
2027 2149 7.063780 CCAAAGAAACCAATAATCAGCACAATC 59.936 37.037 0.00 0.00 0.00 2.67
2043 2165 4.738124 CACAATCTGTACACACTCGATCT 58.262 43.478 0.00 0.00 0.00 2.75
2045 2167 5.968261 CACAATCTGTACACACTCGATCTAG 59.032 44.000 0.00 0.00 0.00 2.43
2046 2168 4.822036 ATCTGTACACACTCGATCTAGC 57.178 45.455 0.00 0.00 0.00 3.42
2421 2543 2.127065 TCCCTCCATTCTGGGCCA 59.873 61.111 5.85 5.85 43.04 5.36
2554 2676 2.661566 GCCATCATCCGATCACGCG 61.662 63.158 3.53 3.53 38.29 6.01
2604 2726 0.249868 TGTCAGACAACGCCAAGGAG 60.250 55.000 0.00 0.00 0.00 3.69
2678 2800 8.088981 TCAACAAGTTTTAGGTCAGTAGATCTC 58.911 37.037 0.00 0.00 36.40 2.75
3162 3288 7.655328 CCTGCACATTCACTTTTACCAAAATAA 59.345 33.333 0.00 0.00 0.00 1.40
3636 3762 3.551485 CCAGAAACAGGAAAACGCAAAAG 59.449 43.478 0.00 0.00 0.00 2.27
3652 3778 1.744320 AAAGGACGCTTTGGGTTGCC 61.744 55.000 0.00 0.00 0.00 4.52
3801 3977 2.763645 AAGGAAACAGGCCGGTGGT 61.764 57.895 10.05 0.00 0.00 4.16
3990 4174 1.450312 CCTCCATGGCCACGTTCTC 60.450 63.158 8.16 0.00 0.00 2.87
4045 4229 1.520494 GAACGGGTCTCCCTTGTTTC 58.480 55.000 3.25 0.00 42.67 2.78
4078 4262 4.737054 CCACAATGGATTAACTTGCACTC 58.263 43.478 0.00 0.00 40.96 3.51
4083 4267 6.205853 ACAATGGATTAACTTGCACTCGTAAA 59.794 34.615 0.00 0.00 0.00 2.01
4084 4268 5.856126 TGGATTAACTTGCACTCGTAAAG 57.144 39.130 0.00 0.00 0.00 1.85
4085 4269 5.543714 TGGATTAACTTGCACTCGTAAAGA 58.456 37.500 0.00 0.00 0.00 2.52
4086 4270 5.407387 TGGATTAACTTGCACTCGTAAAGAC 59.593 40.000 0.00 0.00 0.00 3.01
4087 4271 5.638234 GGATTAACTTGCACTCGTAAAGACT 59.362 40.000 0.00 0.00 0.00 3.24
4092 4284 4.760715 ACTTGCACTCGTAAAGACTCTAGA 59.239 41.667 0.00 0.00 0.00 2.43
4130 4875 9.445878 CTCGTACATCTATAGTGGGAAATACTA 57.554 37.037 0.00 0.00 35.32 1.82
4162 4907 3.485394 TGTATGTGGTGTCATGCAAAGT 58.515 40.909 0.00 0.00 37.45 2.66
4270 5038 9.190858 TCATTGTCACATAAACAAATTTGCTAC 57.809 29.630 18.12 0.94 39.84 3.58
4284 5052 2.579207 TGCTACGTTGGACTCTATGC 57.421 50.000 0.00 0.00 0.00 3.14
4285 5053 1.136305 TGCTACGTTGGACTCTATGCC 59.864 52.381 0.00 0.00 0.00 4.40
4286 5054 1.409427 GCTACGTTGGACTCTATGCCT 59.591 52.381 0.00 0.00 0.00 4.75
4287 5055 2.159085 GCTACGTTGGACTCTATGCCTT 60.159 50.000 0.00 0.00 0.00 4.35
4302 5082 6.082031 TCTATGCCTTTCCCACTATAGCTAA 58.918 40.000 0.00 0.00 0.00 3.09
4310 5090 5.074746 TCCCACTATAGCTAATCTGACCA 57.925 43.478 0.00 0.00 0.00 4.02
4368 5148 0.887933 GGTCGGTTCAAACATGCCAT 59.112 50.000 0.00 0.00 0.00 4.40
4385 5165 4.841617 TTGTGGGGTTTGCGGGCA 62.842 61.111 0.00 0.00 0.00 5.36
4459 5239 0.250513 ATGCGGTTGGAAGAGAGACC 59.749 55.000 0.00 0.00 0.00 3.85
4512 5292 2.382882 TGCGCCCATTTATCCATTCAA 58.617 42.857 4.18 0.00 0.00 2.69
4540 5320 8.921205 ACTACACCCTTCGTCTAACAATATAAT 58.079 33.333 0.00 0.00 0.00 1.28
4626 5406 4.860802 ACCATCAGGACCAAACATCATA 57.139 40.909 0.00 0.00 38.69 2.15
4647 5427 2.208431 CTCTGCCGATTTAGCCAGAAG 58.792 52.381 0.00 0.00 0.00 2.85
4765 5545 7.854557 AATACCTATCAAAACGTAAACCCTC 57.145 36.000 0.00 0.00 0.00 4.30
4810 5591 4.155310 AGTTTATTCGGAAAAAGCACGG 57.845 40.909 0.00 0.00 0.00 4.94
4811 5592 2.622546 TTATTCGGAAAAAGCACGGC 57.377 45.000 0.00 0.00 0.00 5.68
4850 5631 0.106519 CCCTCCTATGGGCACTTTGG 60.107 60.000 0.00 0.00 40.84 3.28
4881 5662 4.214332 GTCTGAGTAGCCTTGAACCAAAAG 59.786 45.833 0.00 0.00 0.00 2.27
4955 5738 8.904099 ATACTAGTGTTATTGGCAAGGATTAC 57.096 34.615 5.39 1.44 0.00 1.89
5051 5834 0.475632 ACCCTTCCCTGGTGATCACA 60.476 55.000 26.47 12.17 33.94 3.58
5077 5860 0.732571 CACACCAAAGCTCGTTGTGT 59.267 50.000 5.82 5.76 0.00 3.72
5087 5877 3.562505 AGCTCGTTGTGTAGTAAGTTCG 58.437 45.455 0.00 0.00 0.00 3.95
5222 6013 2.434359 GCCAGGCCGACAGTACAC 60.434 66.667 0.00 0.00 0.00 2.90
5286 6078 0.249120 CTTCACATGGCTGGGACGTA 59.751 55.000 0.00 0.00 33.48 3.57
5408 6200 4.509230 CCAGACATGACAAATCCGAGTATG 59.491 45.833 0.00 0.00 0.00 2.39
5434 6226 4.675063 AACCCCCTAAATGTCTGTGAAT 57.325 40.909 0.00 0.00 0.00 2.57
5437 6229 3.355378 CCCCTAAATGTCTGTGAATGCA 58.645 45.455 0.00 0.00 0.00 3.96
5446 6238 2.434185 GTGAATGCACTCGCGGGA 60.434 61.111 15.95 0.92 42.97 5.14
5450 6242 3.612247 AATGCACTCGCGGGAAGCT 62.612 57.895 23.82 10.65 45.59 3.74
5452 6244 4.443266 GCACTCGCGGGAAGCTCT 62.443 66.667 15.95 0.00 45.59 4.09
5578 6377 6.035843 TGAAGCAAACAAGCTAAAGACAAAG 58.964 36.000 0.00 0.00 45.89 2.77
5608 6408 6.465084 ACCCTAATTTACTCTAATCATCGGC 58.535 40.000 0.00 0.00 0.00 5.54
5621 6421 0.030235 CATCGGCGATGTCGGAACTA 59.970 55.000 35.12 0.00 40.23 2.24
5691 6491 1.303398 TCGAGGTCCGTGAAGAGCT 60.303 57.895 0.00 0.00 46.91 4.09
5751 6551 0.035725 TGCCTCGACCTCTTACTCGA 60.036 55.000 0.00 0.00 37.37 4.04
5756 6556 3.309410 CCTCGACCTCTTACTCGAACTAC 59.691 52.174 0.00 0.00 38.41 2.73
5841 6641 3.181458 TGTGTTGGAACTTCACCTCCTAC 60.181 47.826 0.00 0.00 37.79 3.18
5867 6667 1.136305 CATGCCAAATCCCTTGAGCTG 59.864 52.381 0.00 0.00 37.17 4.24
5915 6715 2.573462 CCTCCTCCTCCATGTCTTTTGA 59.427 50.000 0.00 0.00 0.00 2.69
5917 6717 4.410228 CCTCCTCCTCCATGTCTTTTGATA 59.590 45.833 0.00 0.00 0.00 2.15
5920 6720 4.878397 CCTCCTCCATGTCTTTTGATACAC 59.122 45.833 0.00 0.00 0.00 2.90
5941 6741 1.279749 CCCCTTTGGTACCTCCTCCC 61.280 65.000 14.36 0.00 37.07 4.30
5980 6780 4.778415 CACGACGTGCCTCCTCGG 62.778 72.222 16.06 0.00 32.62 4.63
5989 6790 3.053849 GCCTCCTCGGACGACACTC 62.054 68.421 0.00 0.00 33.16 3.51
5992 6793 0.882474 CTCCTCGGACGACACTCTTT 59.118 55.000 0.00 0.00 0.00 2.52
6051 6852 6.879458 ACCAGCTTGTAGTAGGTTATTTTCAG 59.121 38.462 0.00 0.00 0.00 3.02
6054 6855 6.812160 AGCTTGTAGTAGGTTATTTTCAGTCG 59.188 38.462 0.00 0.00 0.00 4.18
6060 6861 9.021863 GTAGTAGGTTATTTTCAGTCGATCTTG 57.978 37.037 0.00 0.00 0.00 3.02
6076 6877 2.044806 CTTGGCCATAGGGAGGTCCG 62.045 65.000 6.09 0.00 41.52 4.79
6081 6882 2.203509 ATAGGGAGGTCCGAGCGG 60.204 66.667 1.74 1.74 41.52 5.52
6091 6892 4.840005 CCGAGCGGAAGGGGAAGC 62.840 72.222 2.00 0.00 37.50 3.86
6093 6894 2.124942 GAGCGGAAGGGGAAGCAG 60.125 66.667 0.00 0.00 0.00 4.24
6094 6895 2.607750 AGCGGAAGGGGAAGCAGA 60.608 61.111 0.00 0.00 0.00 4.26
6095 6896 1.977293 GAGCGGAAGGGGAAGCAGAT 61.977 60.000 0.00 0.00 0.00 2.90
6096 6897 1.821332 GCGGAAGGGGAAGCAGATG 60.821 63.158 0.00 0.00 0.00 2.90
6097 6898 1.153086 CGGAAGGGGAAGCAGATGG 60.153 63.158 0.00 0.00 0.00 3.51
6098 6899 1.626356 CGGAAGGGGAAGCAGATGGA 61.626 60.000 0.00 0.00 0.00 3.41
6099 6900 0.182299 GGAAGGGGAAGCAGATGGAG 59.818 60.000 0.00 0.00 0.00 3.86
6100 6901 0.465278 GAAGGGGAAGCAGATGGAGC 60.465 60.000 0.00 0.00 0.00 4.70
6146 6947 2.647299 TGAGTTGAGGAAAATAGGGGCA 59.353 45.455 0.00 0.00 0.00 5.36
6169 6970 1.078347 GGGTTTCCCTCATTGGCCA 59.922 57.895 0.00 0.00 41.34 5.36
6179 6980 3.571401 CCCTCATTGGCCAGCTTAAATAG 59.429 47.826 5.11 0.00 0.00 1.73
6180 6981 4.464008 CCTCATTGGCCAGCTTAAATAGA 58.536 43.478 5.11 0.00 0.00 1.98
6181 6982 4.889409 CCTCATTGGCCAGCTTAAATAGAA 59.111 41.667 5.11 0.00 0.00 2.10
6187 6988 5.570320 TGGCCAGCTTAAATAGAAGACTTT 58.430 37.500 0.00 0.00 0.00 2.66
6206 7007 1.117150 TGGTACCTCGGGTTATGAGC 58.883 55.000 14.36 0.00 37.09 4.26
6212 7013 1.482593 CCTCGGGTTATGAGCAAGAGT 59.517 52.381 9.38 0.00 31.79 3.24
6214 7015 3.243569 CCTCGGGTTATGAGCAAGAGTAG 60.244 52.174 9.38 0.00 31.79 2.57
6215 7016 2.100916 TCGGGTTATGAGCAAGAGTAGC 59.899 50.000 0.00 0.00 0.00 3.58
6233 7034 1.995484 AGCGTCATGAATGTGTTCTCG 59.005 47.619 0.00 0.00 35.33 4.04
6290 7092 3.697747 CGCGGGTCCCACCTGTTA 61.698 66.667 9.12 0.00 46.46 2.41
6344 7146 1.967319 ATCCGCACAACATATGGGAC 58.033 50.000 7.80 0.00 32.54 4.46
6362 7164 2.036862 GGACGGGTATGAGGGTTGATAC 59.963 54.545 0.00 0.00 0.00 2.24
6366 7168 3.118555 CGGGTATGAGGGTTGATACACAA 60.119 47.826 0.00 0.00 36.02 3.33
6382 7184 1.071471 CAACTTGGACGGAGCTGGT 59.929 57.895 0.00 0.00 0.00 4.00
6395 7197 1.152830 GCTGGTTTTGGGGAGTCCA 59.847 57.895 12.30 0.00 45.43 4.02
6425 7227 7.308469 GCATGGAGATTTTCTATCTGGATTGTC 60.308 40.741 0.00 0.00 0.00 3.18
6426 7228 6.595682 TGGAGATTTTCTATCTGGATTGTCC 58.404 40.000 0.00 0.00 36.96 4.02
6453 7255 1.368374 TGTTTAGGGAGGGAAGTGGG 58.632 55.000 0.00 0.00 0.00 4.61
6466 7268 2.629051 GAAGTGGGTGGTCCGATTAAG 58.371 52.381 0.00 0.00 38.76 1.85
6584 7387 5.582665 GCTAGTTAGGATGGTCTCAAAACTG 59.417 44.000 0.00 0.00 34.25 3.16
6679 7482 4.403752 CACCATCTCATACTGAAGAGGTCA 59.596 45.833 0.00 0.00 32.76 4.02
6683 7486 6.448852 CATCTCATACTGAAGAGGTCATCAG 58.551 44.000 10.03 10.03 44.58 2.90
6701 7504 6.825721 GTCATCAGAACAACCTATCCAATTCT 59.174 38.462 0.00 0.00 0.00 2.40
6729 7532 7.011016 GTCCTTCCAACCAAACAATAAAAAGTG 59.989 37.037 0.00 0.00 0.00 3.16
6740 7543 7.867445 AACAATAAAAAGTGCTTATCCAACG 57.133 32.000 0.00 0.00 0.00 4.10
6747 7550 6.422776 AAAGTGCTTATCCAACGTATCAAG 57.577 37.500 0.00 0.00 0.00 3.02
6756 7559 1.278127 CAACGTATCAAGTCCCACCCT 59.722 52.381 0.00 0.00 0.00 4.34
6759 7562 2.292061 ACGTATCAAGTCCCACCCTACT 60.292 50.000 0.00 0.00 0.00 2.57
6760 7563 3.053395 ACGTATCAAGTCCCACCCTACTA 60.053 47.826 0.00 0.00 0.00 1.82
6772 7575 7.037153 AGTCCCACCCTACTAATCAAAATAACA 60.037 37.037 0.00 0.00 0.00 2.41
6789 7592 3.864789 AACATGGCTATCCCTAACCAG 57.135 47.619 0.00 0.00 35.20 4.00
6790 7593 2.057922 ACATGGCTATCCCTAACCAGG 58.942 52.381 0.00 0.00 42.22 4.45
6809 7614 2.630098 AGGTGGTGTGATATCCTCATCG 59.370 50.000 0.00 0.00 35.97 3.84
6852 7657 1.885163 AACACCCCCTTAGTCGCTCG 61.885 60.000 0.00 0.00 0.00 5.03
6869 7674 1.005037 CGGTGCACCTTGAGCTACA 60.005 57.895 32.28 0.00 0.00 2.74
6883 7688 3.111838 GAGCTACATCACAGTCATGTCG 58.888 50.000 0.00 0.00 37.65 4.35
6894 7699 1.002430 AGTCATGTCGTGTGGCATTCT 59.998 47.619 0.00 0.00 0.00 2.40
6930 7735 2.438021 GCTAGATGTTGGGATGGTGGTA 59.562 50.000 0.00 0.00 0.00 3.25
6932 7737 3.582998 AGATGTTGGGATGGTGGTATG 57.417 47.619 0.00 0.00 0.00 2.39
6942 7747 1.285280 TGGTGGTATGGAAGGAGGTG 58.715 55.000 0.00 0.00 0.00 4.00
6988 7793 2.159338 AGCATGGTGAATGTCGATTTGC 60.159 45.455 0.00 0.00 38.65 3.68
6989 7794 2.415759 GCATGGTGAATGTCGATTTGCA 60.416 45.455 0.00 0.00 38.65 4.08
6994 7800 3.504863 GTGAATGTCGATTTGCAGCATT 58.495 40.909 0.00 0.00 33.14 3.56
7016 7822 1.528129 GTTGCCCTTGTCTTGAGAGG 58.472 55.000 0.00 0.00 0.00 3.69
7029 7835 1.712056 TGAGAGGGTCGAAGGTTTCA 58.288 50.000 0.00 0.00 0.00 2.69
7035 7841 1.200020 GGGTCGAAGGTTTCATGCAAG 59.800 52.381 0.00 0.00 0.00 4.01
7061 7867 2.021457 GTCCTACAGGTGCTCTCTCTC 58.979 57.143 0.00 0.00 36.34 3.20
7062 7868 1.919654 TCCTACAGGTGCTCTCTCTCT 59.080 52.381 0.00 0.00 36.34 3.10
7063 7869 2.092646 TCCTACAGGTGCTCTCTCTCTC 60.093 54.545 0.00 0.00 36.34 3.20
7064 7870 2.092429 CCTACAGGTGCTCTCTCTCTCT 60.092 54.545 0.00 0.00 0.00 3.10
7065 7871 2.128771 ACAGGTGCTCTCTCTCTCTC 57.871 55.000 0.00 0.00 0.00 3.20
7066 7872 1.635487 ACAGGTGCTCTCTCTCTCTCT 59.365 52.381 0.00 0.00 0.00 3.10
7067 7873 2.292267 CAGGTGCTCTCTCTCTCTCTC 58.708 57.143 0.00 0.00 0.00 3.20
7068 7874 2.092753 CAGGTGCTCTCTCTCTCTCTCT 60.093 54.545 0.00 0.00 0.00 3.10
7069 7875 2.171448 AGGTGCTCTCTCTCTCTCTCTC 59.829 54.545 0.00 0.00 0.00 3.20
7070 7876 2.171448 GGTGCTCTCTCTCTCTCTCTCT 59.829 54.545 0.00 0.00 0.00 3.10
7071 7877 3.462021 GTGCTCTCTCTCTCTCTCTCTC 58.538 54.545 0.00 0.00 0.00 3.20
7072 7878 3.133721 GTGCTCTCTCTCTCTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
7073 7879 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
7074 7880 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
7075 7881 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
7076 7882 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
7077 7883 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7078 7884 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
7079 7885 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7080 7886 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
7081 7887 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7082 7888 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
7083 7889 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
7084 7890 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
7085 7891 6.945435 TCTCTCTCTCTCTCTCTCTCTCTATC 59.055 46.154 0.00 0.00 0.00 2.08
7086 7892 6.857848 TCTCTCTCTCTCTCTCTCTCTATCT 58.142 44.000 0.00 0.00 0.00 1.98
7087 7893 6.945435 TCTCTCTCTCTCTCTCTCTCTATCTC 59.055 46.154 0.00 0.00 0.00 2.75
7088 7894 6.857848 TCTCTCTCTCTCTCTCTCTATCTCT 58.142 44.000 0.00 0.00 0.00 3.10
7089 7895 7.990055 TCTCTCTCTCTCTCTCTCTATCTCTA 58.010 42.308 0.00 0.00 0.00 2.43
7090 7896 8.619281 TCTCTCTCTCTCTCTCTCTATCTCTAT 58.381 40.741 0.00 0.00 0.00 1.98
7091 7897 8.815565 TCTCTCTCTCTCTCTCTATCTCTATC 57.184 42.308 0.00 0.00 0.00 2.08
7092 7898 8.619281 TCTCTCTCTCTCTCTCTATCTCTATCT 58.381 40.741 0.00 0.00 0.00 1.98
7093 7899 8.815565 TCTCTCTCTCTCTCTATCTCTATCTC 57.184 42.308 0.00 0.00 0.00 2.75
7094 7900 8.619281 TCTCTCTCTCTCTCTATCTCTATCTCT 58.381 40.741 0.00 0.00 0.00 3.10
7095 7901 8.815565 TCTCTCTCTCTCTATCTCTATCTCTC 57.184 42.308 0.00 0.00 0.00 3.20
7096 7902 8.619281 TCTCTCTCTCTCTATCTCTATCTCTCT 58.381 40.741 0.00 0.00 0.00 3.10
7097 7903 8.815565 TCTCTCTCTCTATCTCTATCTCTCTC 57.184 42.308 0.00 0.00 0.00 3.20
7098 7904 8.619281 TCTCTCTCTCTATCTCTATCTCTCTCT 58.381 40.741 0.00 0.00 0.00 3.10
7099 7905 8.815565 TCTCTCTCTATCTCTATCTCTCTCTC 57.184 42.308 0.00 0.00 0.00 3.20
7100 7906 8.619281 TCTCTCTCTATCTCTATCTCTCTCTCT 58.381 40.741 0.00 0.00 0.00 3.10
7101 7907 8.815565 TCTCTCTATCTCTATCTCTCTCTCTC 57.184 42.308 0.00 0.00 0.00 3.20
7102 7908 8.619281 TCTCTCTATCTCTATCTCTCTCTCTCT 58.381 40.741 0.00 0.00 0.00 3.10
7103 7909 8.815565 TCTCTATCTCTATCTCTCTCTCTCTC 57.184 42.308 0.00 0.00 0.00 3.20
7104 7910 8.619281 TCTCTATCTCTATCTCTCTCTCTCTCT 58.381 40.741 0.00 0.00 0.00 3.10
7105 7911 8.815565 TCTATCTCTATCTCTCTCTCTCTCTC 57.184 42.308 0.00 0.00 0.00 3.20
7106 7912 8.619281 TCTATCTCTATCTCTCTCTCTCTCTCT 58.381 40.741 0.00 0.00 0.00 3.10
7107 7913 7.716799 ATCTCTATCTCTCTCTCTCTCTCTC 57.283 44.000 0.00 0.00 0.00 3.20
7108 7914 6.857848 TCTCTATCTCTCTCTCTCTCTCTCT 58.142 44.000 0.00 0.00 0.00 3.10
7109 7915 6.945435 TCTCTATCTCTCTCTCTCTCTCTCTC 59.055 46.154 0.00 0.00 0.00 3.20
7110 7916 6.857848 TCTATCTCTCTCTCTCTCTCTCTCT 58.142 44.000 0.00 0.00 0.00 3.10
7111 7917 6.945435 TCTATCTCTCTCTCTCTCTCTCTCTC 59.055 46.154 0.00 0.00 0.00 3.20
7112 7918 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
7113 7919 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7114 7920 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
7115 7921 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7116 7922 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
7117 7923 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7118 7924 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
7119 7925 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7139 7945 3.051210 CTGCCAGAGTCACGGTGA 58.949 61.111 6.76 6.76 0.00 4.02
7153 7959 1.302383 CGGTGACTCGTCTCTGCTCT 61.302 60.000 0.00 0.00 0.00 4.09
7188 7995 3.924114 TGGTTCTCTTCACTTTCCACA 57.076 42.857 0.00 0.00 0.00 4.17
7189 7996 3.808728 TGGTTCTCTTCACTTTCCACAG 58.191 45.455 0.00 0.00 0.00 3.66
7216 8023 1.453015 GTTGTGAGGTGGTGGTGCA 60.453 57.895 0.00 0.00 0.00 4.57
7230 8037 4.502939 TGCAGTGCCTGGTGTGCA 62.503 61.111 13.72 13.49 43.50 4.57
7281 8088 1.414158 GTCTTGATCCCCCTCATCGA 58.586 55.000 0.00 0.00 0.00 3.59
7293 8100 1.066573 CCTCATCGAGTTGGTCAAGCT 60.067 52.381 0.00 0.00 0.00 3.74
7303 8110 3.455910 AGTTGGTCAAGCTAGATATGGCA 59.544 43.478 0.00 0.00 0.00 4.92
7311 8118 3.983741 AGCTAGATATGGCAAGTTCGAC 58.016 45.455 0.00 0.00 0.00 4.20
7318 8126 2.342648 GCAAGTTCGACGGAGGGT 59.657 61.111 0.00 0.00 0.00 4.34
7411 8219 5.743467 CGTATTTGTGCTTGTGTTTCACTA 58.257 37.500 1.72 0.00 35.11 2.74
7423 8231 8.237267 GCTTGTGTTTCACTATTTTGTATAGCT 58.763 33.333 0.00 0.00 35.11 3.32
7451 8260 2.808543 GACTTCGTGCACTTTGGATCTT 59.191 45.455 16.19 0.00 0.00 2.40
7461 8270 4.559502 GCACTTTGGATCTTGTTTTCCCTC 60.560 45.833 0.00 0.00 0.00 4.30
7574 8383 6.772233 TCTTGTGAATCATCAGAAACCAGAAA 59.228 34.615 0.00 0.00 38.25 2.52
7575 8384 7.449395 TCTTGTGAATCATCAGAAACCAGAAAT 59.551 33.333 0.00 0.00 38.25 2.17
7577 8386 6.716173 TGTGAATCATCAGAAACCAGAAATGA 59.284 34.615 0.00 0.00 35.88 2.57
7583 8392 4.579869 TCAGAAACCAGAAATGACTAGGC 58.420 43.478 0.00 0.00 0.00 3.93
7586 8395 4.762251 AGAAACCAGAAATGACTAGGCAAC 59.238 41.667 0.13 0.00 0.00 4.17
7617 8426 7.764443 TCAACAAGTATATCAGCTAACTCAACC 59.236 37.037 0.00 0.00 0.00 3.77
7618 8427 6.583562 ACAAGTATATCAGCTAACTCAACCC 58.416 40.000 0.00 0.00 0.00 4.11
7619 8428 5.810080 AGTATATCAGCTAACTCAACCCC 57.190 43.478 0.00 0.00 0.00 4.95
7620 8429 4.593634 AGTATATCAGCTAACTCAACCCCC 59.406 45.833 0.00 0.00 0.00 5.40
7661 8724 5.104360 TGGCAAGATAAGCTATGAGGAGTTT 60.104 40.000 0.00 0.00 0.00 2.66
7667 8730 8.540507 AGATAAGCTATGAGGAGTTTGAGTTA 57.459 34.615 0.00 0.00 0.00 2.24
7697 8760 1.577736 CTGGAGTGGACTGGAGGAAT 58.422 55.000 0.00 0.00 0.00 3.01
7722 8785 2.621526 TCACGACAGTACTCAAGAGCAA 59.378 45.455 0.00 0.00 0.00 3.91
7763 8826 3.393800 CAAGATGTTCAAGGACGTGTCT 58.606 45.455 0.00 0.00 0.00 3.41
7786 8849 1.860944 AAGCTTGATCCCAGCAGCCT 61.861 55.000 14.67 0.00 0.00 4.58
7812 8875 1.963515 GTGGTGCTGGGAAAGAACAAT 59.036 47.619 0.00 0.00 35.90 2.71
7865 8928 3.200294 TGCATGCTCATTTGTAACACG 57.800 42.857 20.33 0.00 0.00 4.49
7866 8929 1.913403 GCATGCTCATTTGTAACACGC 59.087 47.619 11.37 0.00 0.00 5.34
7867 8930 2.668001 GCATGCTCATTTGTAACACGCA 60.668 45.455 11.37 0.00 0.00 5.24
7868 8931 2.679355 TGCTCATTTGTAACACGCAC 57.321 45.000 0.00 0.00 0.00 5.34
7869 8932 1.943340 TGCTCATTTGTAACACGCACA 59.057 42.857 0.00 0.00 0.00 4.57
7870 8933 2.286713 TGCTCATTTGTAACACGCACAC 60.287 45.455 0.00 0.00 0.00 3.82
7871 8934 2.286713 GCTCATTTGTAACACGCACACA 60.287 45.455 0.00 0.00 0.00 3.72
7872 8935 3.288242 CTCATTTGTAACACGCACACAC 58.712 45.455 0.00 0.00 0.00 3.82
7873 8936 2.678336 TCATTTGTAACACGCACACACA 59.322 40.909 0.00 0.00 0.00 3.72
7874 8937 2.815657 TTTGTAACACGCACACACAG 57.184 45.000 0.00 0.00 0.00 3.66
7875 8938 2.011540 TTGTAACACGCACACACAGA 57.988 45.000 0.00 0.00 0.00 3.41
7876 8939 1.282817 TGTAACACGCACACACAGAC 58.717 50.000 0.00 0.00 0.00 3.51
7882 8945 0.461870 ACGCACACACAGACACACAT 60.462 50.000 0.00 0.00 0.00 3.21
7887 8950 3.457234 CACACACAGACACACATACACT 58.543 45.455 0.00 0.00 0.00 3.55
7909 8972 0.923403 CTCACTCACACACACACACG 59.077 55.000 0.00 0.00 0.00 4.49
7914 8977 0.102300 TCACACACACACACGGAGAG 59.898 55.000 0.00 0.00 0.00 3.20
7915 8978 0.102300 CACACACACACACGGAGAGA 59.898 55.000 0.00 0.00 0.00 3.10
7916 8979 0.385751 ACACACACACACGGAGAGAG 59.614 55.000 0.00 0.00 0.00 3.20
7917 8980 0.668535 CACACACACACGGAGAGAGA 59.331 55.000 0.00 0.00 0.00 3.10
7918 8981 0.955178 ACACACACACGGAGAGAGAG 59.045 55.000 0.00 0.00 0.00 3.20
7919 8982 1.239347 CACACACACGGAGAGAGAGA 58.761 55.000 0.00 0.00 0.00 3.10
7920 8983 1.815613 CACACACACGGAGAGAGAGAT 59.184 52.381 0.00 0.00 0.00 2.75
7921 8984 1.815613 ACACACACGGAGAGAGAGATG 59.184 52.381 0.00 0.00 0.00 2.90
7928 8991 2.507886 ACGGAGAGAGAGATGGAGAGAA 59.492 50.000 0.00 0.00 0.00 2.87
7931 8994 4.536765 GGAGAGAGAGATGGAGAGAAAGT 58.463 47.826 0.00 0.00 0.00 2.66
8051 9148 2.264005 ATGCGGGTGTCAAACAACTA 57.736 45.000 0.00 0.00 35.75 2.24
8157 9254 2.355717 AGTGAAAGCGAGCTGAGTAC 57.644 50.000 0.00 0.00 0.00 2.73
8168 9265 3.615110 CGAGCTGAGTACTCAAACCATGT 60.615 47.826 25.14 5.99 39.39 3.21
8280 9377 4.930963 AGATCACTTGAGAATAGCAGACG 58.069 43.478 0.00 0.00 0.00 4.18
8285 9382 3.258372 ACTTGAGAATAGCAGACGTTGGA 59.742 43.478 0.00 0.00 0.00 3.53
8286 9383 3.510388 TGAGAATAGCAGACGTTGGAG 57.490 47.619 0.00 0.00 0.00 3.86
8287 9384 2.166459 TGAGAATAGCAGACGTTGGAGG 59.834 50.000 0.00 0.00 0.00 4.30
8288 9385 2.427453 GAGAATAGCAGACGTTGGAGGA 59.573 50.000 0.00 0.00 0.00 3.71
8289 9386 2.166664 AGAATAGCAGACGTTGGAGGAC 59.833 50.000 0.00 0.00 0.00 3.85
8294 9411 1.404315 GCAGACGTTGGAGGACTTAGG 60.404 57.143 0.00 0.00 0.00 2.69
8296 9413 2.094649 CAGACGTTGGAGGACTTAGGAC 60.095 54.545 0.00 0.00 0.00 3.85
8324 9441 3.475566 TGCCTGAGTATTGTATCTGCC 57.524 47.619 0.00 0.00 0.00 4.85
8332 9449 5.165961 AGTATTGTATCTGCCGCCAATAT 57.834 39.130 3.35 0.00 33.69 1.28
8407 9524 5.643379 TTCATCATCCAAACAGCTTTACC 57.357 39.130 0.00 0.00 0.00 2.85
8439 9556 1.999735 TGAGTTATTGCGAGCGAAAGG 59.000 47.619 0.00 0.00 0.00 3.11
8544 9662 5.697178 TGCAAAGTCGTACTTAGCAATACAA 59.303 36.000 0.00 0.00 37.47 2.41
8554 9672 6.554334 ACTTAGCAATACAAAAGCTTCGAA 57.446 33.333 0.00 0.00 39.68 3.71
8569 9687 0.971386 TCGAACAACTGGGGTCTACC 59.029 55.000 0.00 0.00 39.11 3.18
8580 9698 2.652348 TGGGGTCTACCACATGGAAAAT 59.348 45.455 4.53 0.00 46.28 1.82
8636 9754 7.912250 CGAAGGAAATAAATCTTTGATGTGAGG 59.088 37.037 0.00 0.00 0.00 3.86
8639 9757 8.743714 AGGAAATAAATCTTTGATGTGAGGAAC 58.256 33.333 0.00 0.00 0.00 3.62
8659 9777 5.701290 GGAACTCACTAAAGAGCAAAGCTTA 59.299 40.000 0.00 0.00 39.88 3.09
8674 9792 0.890683 GCTTATGGCCACAAGCAACT 59.109 50.000 37.68 10.23 45.20 3.16
8689 9809 3.793559 AGCAACTTGTTACTGACGTCTT 58.206 40.909 17.92 6.30 0.00 3.01
8705 9825 6.484540 TGACGTCTTCATCGTATCTACTTTC 58.515 40.000 17.92 0.00 41.64 2.62
8718 9838 9.023962 TCGTATCTACTTTCCCTAACACTTTTA 57.976 33.333 0.00 0.00 0.00 1.52
8730 9850 7.612633 TCCCTAACACTTTTACTCTTGTTTTGT 59.387 33.333 0.00 0.00 34.15 2.83
8769 9889 6.208599 TGATTTGAATGAAACTAACCAGGACC 59.791 38.462 0.00 0.00 0.00 4.46
8771 9891 2.781681 ATGAAACTAACCAGGACCGG 57.218 50.000 0.00 0.00 0.00 5.28
8772 9892 1.426751 TGAAACTAACCAGGACCGGT 58.573 50.000 6.92 6.92 42.71 5.28
8792 9912 4.432712 GGTGTTGTTTTCAGCAGAATTGT 58.567 39.130 0.00 0.00 41.38 2.71
8811 9931 7.821846 AGAATTGTTATGGTGTTGTTTTTGTGT 59.178 29.630 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 125 3.471680 GAGGTCTTGATATCCACTTGGC 58.528 50.000 0.00 0.00 34.44 4.52
148 150 6.289482 TGATAGTCTTATCCAACCCTAGGA 57.711 41.667 11.48 0.00 39.97 2.94
331 333 0.777446 CACTTGGAGGGGAAAAGGGA 59.223 55.000 0.00 0.00 0.00 4.20
407 409 0.553819 AGATCCTCACGTCCCTAGCT 59.446 55.000 0.00 0.00 0.00 3.32
418 420 2.353109 GCGCTATGCATGTAGATCCTCA 60.353 50.000 10.16 0.00 45.45 3.86
434 436 2.756691 TCCTACCCGCAAGCGCTA 60.757 61.111 12.05 0.00 38.24 4.26
500 502 4.202101 CGTGAGCTTAGATTGATGGACTCT 60.202 45.833 0.00 0.00 0.00 3.24
510 512 0.460284 CGTGCCCGTGAGCTTAGATT 60.460 55.000 0.00 0.00 0.00 2.40
543 545 3.496160 CCCTGATGGCCTCCCCTG 61.496 72.222 3.32 0.00 0.00 4.45
592 594 1.269998 GCGACTACCAATAGCCTCGAT 59.730 52.381 0.00 0.00 31.68 3.59
612 614 1.227556 GTGGCCACTATAGCACCGG 60.228 63.158 29.12 0.00 0.00 5.28
620 622 0.391661 CACTTGCTCGTGGCCACTAT 60.392 55.000 32.28 4.36 40.92 2.12
635 637 4.643387 GCTCCCACGCCCACACTT 62.643 66.667 0.00 0.00 0.00 3.16
653 655 2.432444 TGACCGCCCAAAAGATGTTAG 58.568 47.619 0.00 0.00 0.00 2.34
656 658 1.698506 TTTGACCGCCCAAAAGATGT 58.301 45.000 0.00 0.00 33.56 3.06
735 740 7.146648 CCGTGGTTTTACTATTTTTGGCTTTA 58.853 34.615 0.00 0.00 0.00 1.85
831 836 2.787956 AGGAGAGGAGGAGAGAGATGA 58.212 52.381 0.00 0.00 0.00 2.92
910 915 1.257750 TGTGCACCTGGCTACGATCT 61.258 55.000 15.69 0.00 45.15 2.75
955 960 1.301401 CGTCGTTGGGCAGGAAAGA 60.301 57.895 0.00 0.00 0.00 2.52
1280 1285 3.453679 ACGCGAGCTTCTCTCCCC 61.454 66.667 15.93 0.00 38.62 4.81
1759 1766 3.296322 ACGTGGGTAATGTTTGCAATG 57.704 42.857 0.00 0.00 0.00 2.82
1837 1958 8.314751 ACTATATACATCTTGAACCACATAGCC 58.685 37.037 0.00 0.00 0.00 3.93
1978 2099 9.632807 TTGGAAAATAACGGATTCTACATTTTG 57.367 29.630 0.00 0.00 0.00 2.44
1998 2119 6.928492 GTGCTGATTATTGGTTTCTTTGGAAA 59.072 34.615 0.00 0.00 38.90 3.13
2000 2121 5.538053 TGTGCTGATTATTGGTTTCTTTGGA 59.462 36.000 0.00 0.00 0.00 3.53
2002 2123 7.816031 AGATTGTGCTGATTATTGGTTTCTTTG 59.184 33.333 0.00 0.00 0.00 2.77
2027 2149 2.608090 TCGCTAGATCGAGTGTGTACAG 59.392 50.000 14.89 0.00 34.09 2.74
2043 2165 3.173668 AGTGTTGTGTTTCAGTCGCTA 57.826 42.857 0.00 0.00 0.00 4.26
2045 2167 2.825086 AAGTGTTGTGTTTCAGTCGC 57.175 45.000 0.00 0.00 0.00 5.19
2046 2168 4.201485 GCAAAAAGTGTTGTGTTTCAGTCG 60.201 41.667 0.00 0.00 0.00 4.18
2244 2366 7.754924 CCGCACATAACTAGAAAAATCATGTTT 59.245 33.333 0.00 0.00 0.00 2.83
2421 2543 5.125739 CAGATTCCAGGAGTACGAACTTACT 59.874 44.000 0.00 0.00 35.56 2.24
2554 2676 2.940007 CTCGCGCTCGAAGTCGAC 60.940 66.667 7.70 7.70 44.98 4.20
2678 2800 4.645535 TCAGAGAAGTGGAAGGAATTGTG 58.354 43.478 0.00 0.00 0.00 3.33
3238 3364 5.612688 AGTTCAATGATATGGTAGGGGTCAT 59.387 40.000 0.00 0.00 0.00 3.06
3652 3778 2.056223 TCTTAAGGAGCGACCCGGG 61.056 63.158 22.25 22.25 40.05 5.73
3666 3792 1.180456 TTGCCTCCCGTGTCGTCTTA 61.180 55.000 0.00 0.00 0.00 2.10
4045 4229 4.630644 ATCCATTGTGGCTAGTCTATGG 57.369 45.455 13.99 13.99 37.47 2.74
4085 4269 9.920133 TGTACGAGTCGTAATATAATCTAGAGT 57.080 33.333 25.98 0.00 43.95 3.24
4102 4294 6.630444 TTTCCCACTATAGATGTACGAGTC 57.370 41.667 6.78 0.00 0.00 3.36
4107 4299 9.007901 ACGTAGTATTTCCCACTATAGATGTAC 57.992 37.037 6.78 0.00 41.94 2.90
4130 4875 9.203421 CATGACACCACATACAATATATTACGT 57.797 33.333 0.00 0.00 0.00 3.57
4142 4887 4.503741 AACTTTGCATGACACCACATAC 57.496 40.909 0.00 0.00 0.00 2.39
4143 4888 4.582240 TGAAACTTTGCATGACACCACATA 59.418 37.500 0.00 0.00 0.00 2.29
4234 4982 9.283768 TGTTTATGTGACAATGAGTTGAGTAAT 57.716 29.630 0.00 0.00 38.71 1.89
4243 4991 8.301730 AGCAAATTTGTTTATGTGACAATGAG 57.698 30.769 19.03 0.00 36.92 2.90
4258 5026 4.134563 AGAGTCCAACGTAGCAAATTTGT 58.865 39.130 19.03 8.88 0.00 2.83
4270 5038 2.280628 GGAAAGGCATAGAGTCCAACG 58.719 52.381 0.00 0.00 0.00 4.10
4284 5052 6.459923 GTCAGATTAGCTATAGTGGGAAAGG 58.540 44.000 0.84 0.00 0.00 3.11
4285 5053 6.042093 TGGTCAGATTAGCTATAGTGGGAAAG 59.958 42.308 0.84 0.00 0.00 2.62
4286 5054 5.903010 TGGTCAGATTAGCTATAGTGGGAAA 59.097 40.000 0.84 0.00 0.00 3.13
4287 5055 5.464069 TGGTCAGATTAGCTATAGTGGGAA 58.536 41.667 0.84 0.00 0.00 3.97
4302 5082 2.990479 GGCCCGACTTGGTCAGAT 59.010 61.111 0.00 0.00 35.15 2.90
4358 5138 1.433121 AACCCCACAATGGCATGTTT 58.567 45.000 0.00 0.00 35.79 2.83
4368 5148 4.841617 TGCCCGCAAACCCCACAA 62.842 61.111 0.00 0.00 0.00 3.33
4385 5165 2.436417 CCATTCGACAAGACCAATGGT 58.564 47.619 3.74 3.74 40.28 3.55
4444 5224 0.680061 ACACGGTCTCTCTTCCAACC 59.320 55.000 0.00 0.00 0.00 3.77
4481 5261 0.176219 ATGGGCGCAATTGTCCATTG 59.824 50.000 10.83 0.00 44.79 2.82
4491 5271 2.382882 TGAATGGATAAATGGGCGCAA 58.617 42.857 10.83 0.00 0.00 4.85
4512 5292 4.942761 TGTTAGACGAAGGGTGTAGTTT 57.057 40.909 0.00 0.00 0.00 2.66
4590 5370 3.944015 CTGATGGTTTGATGAGTTCCCTC 59.056 47.826 0.00 0.00 38.27 4.30
4602 5382 3.573538 TGATGTTTGGTCCTGATGGTTTG 59.426 43.478 0.00 0.00 34.23 2.93
4810 5591 1.227674 CTGGGTAGATGCCTTCCGC 60.228 63.158 0.00 0.00 31.28 5.54
4811 5592 0.390860 CTCTGGGTAGATGCCTTCCG 59.609 60.000 0.00 0.00 31.28 4.30
4850 5631 5.539048 TCAAGGCTACTCAGACACTTTAAC 58.461 41.667 0.00 0.00 28.86 2.01
4955 5738 1.721389 CCATGTCACTTCGTCAAGTCG 59.279 52.381 0.00 0.00 41.24 4.18
5051 5834 2.027192 ACGAGCTTTGGTGTGGTGATAT 60.027 45.455 0.00 0.00 0.00 1.63
5077 5860 4.109766 CGATGGATGCAACGAACTTACTA 58.890 43.478 11.44 0.00 0.00 1.82
5087 5877 1.656441 GATGGGCGATGGATGCAAC 59.344 57.895 0.00 0.00 0.00 4.17
5134 5925 2.125147 GCAGCATCTACCGCCACA 60.125 61.111 0.00 0.00 0.00 4.17
5152 5943 2.176546 CGACATTGTTGCGCCCAG 59.823 61.111 4.18 0.00 0.00 4.45
5163 5954 1.070821 CAGCATGACACGTCGACATT 58.929 50.000 17.16 0.00 39.69 2.71
5408 6200 5.188359 TCACAGACATTTAGGGGGTTAGTAC 59.812 44.000 0.00 0.00 0.00 2.73
5434 6226 4.742201 GAGCTTCCCGCGAGTGCA 62.742 66.667 8.23 0.00 45.59 4.57
5437 6229 3.764466 CCAGAGCTTCCCGCGAGT 61.764 66.667 8.23 0.00 45.59 4.18
5446 6238 2.204059 AGGGGCAGACCAGAGCTT 60.204 61.111 0.00 0.00 42.91 3.74
5450 6242 1.360393 AAAACCAGGGGCAGACCAGA 61.360 55.000 0.00 0.00 42.91 3.86
5452 6244 1.623625 AAAAACCAGGGGCAGACCA 59.376 52.632 0.00 0.00 42.91 4.02
5552 6351 5.762045 TGTCTTTAGCTTGTTTGCTTCATC 58.238 37.500 0.00 0.00 43.74 2.92
5599 6398 0.104120 TTCCGACATCGCCGATGATT 59.896 50.000 31.85 12.05 42.09 2.57
5603 6403 0.030369 GTAGTTCCGACATCGCCGAT 59.970 55.000 0.00 0.00 38.18 4.18
5608 6408 3.528594 CGAGGTAGTTCCGACATCG 57.471 57.895 0.00 0.00 43.50 3.84
5691 6491 2.031012 CGACTTGTGGCAGGAGCA 59.969 61.111 0.00 0.00 44.61 4.26
5738 6538 6.762661 ACTAGATGTAGTTCGAGTAAGAGGTC 59.237 42.308 0.00 0.00 35.88 3.85
5751 6551 4.202161 CGCCATCCTTGACTAGATGTAGTT 60.202 45.833 3.73 0.00 39.78 2.24
5756 6556 1.414181 ACCGCCATCCTTGACTAGATG 59.586 52.381 0.00 0.00 39.69 2.90
5841 6641 0.554792 AGGGATTTGGCATGGAGGAG 59.445 55.000 0.00 0.00 0.00 3.69
5867 6667 1.749258 GCACCGGGAATGGAGGTTC 60.749 63.158 6.32 0.00 35.85 3.62
5941 6741 1.405105 CACTCAAATTATGGTGGGGCG 59.595 52.381 0.00 0.00 30.85 6.13
5980 6780 2.235546 GGCACCAAAGAGTGTCGTC 58.764 57.895 0.00 0.00 40.04 4.20
5989 6790 1.210931 CAGATGTGCGGCACCAAAG 59.789 57.895 28.57 13.45 32.73 2.77
5992 6793 4.720902 CCCAGATGTGCGGCACCA 62.721 66.667 28.57 17.43 32.73 4.17
6023 6824 3.679824 AACCTACTACAAGCTGGTCAC 57.320 47.619 0.00 0.00 0.00 3.67
6051 6852 1.001406 CTCCCTATGGCCAAGATCGAC 59.999 57.143 10.96 0.00 0.00 4.20
6054 6855 1.349357 GACCTCCCTATGGCCAAGATC 59.651 57.143 10.96 0.00 0.00 2.75
6060 6861 2.122989 TCGGACCTCCCTATGGCC 60.123 66.667 0.00 0.00 0.00 5.36
6076 6877 1.977293 ATCTGCTTCCCCTTCCGCTC 61.977 60.000 0.00 0.00 0.00 5.03
6081 6882 0.465278 GCTCCATCTGCTTCCCCTTC 60.465 60.000 0.00 0.00 0.00 3.46
6085 6886 1.227497 CTCGCTCCATCTGCTTCCC 60.227 63.158 0.00 0.00 0.00 3.97
6086 6887 0.809241 CACTCGCTCCATCTGCTTCC 60.809 60.000 0.00 0.00 0.00 3.46
6089 6890 2.186384 GCACTCGCTCCATCTGCT 59.814 61.111 0.00 0.00 34.30 4.24
6112 6913 0.179215 CAACTCATTTCTGTCCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
6167 6968 7.065923 GGTACCAAAGTCTTCTATTTAAGCTGG 59.934 40.741 7.15 0.00 0.00 4.85
6169 6970 7.919151 AGGTACCAAAGTCTTCTATTTAAGCT 58.081 34.615 15.94 0.00 0.00 3.74
6179 6980 1.622312 ACCCGAGGTACCAAAGTCTTC 59.378 52.381 15.94 0.00 32.11 2.87
6180 6981 1.725803 ACCCGAGGTACCAAAGTCTT 58.274 50.000 15.94 0.00 32.11 3.01
6181 6982 1.725803 AACCCGAGGTACCAAAGTCT 58.274 50.000 15.94 0.00 33.12 3.24
6187 6988 1.117150 GCTCATAACCCGAGGTACCA 58.883 55.000 15.94 0.00 33.12 3.25
6206 7007 3.928992 ACACATTCATGACGCTACTCTTG 59.071 43.478 0.00 0.00 0.00 3.02
6212 7013 3.179048 CGAGAACACATTCATGACGCTA 58.821 45.455 0.00 0.00 37.29 4.26
6214 7015 1.527793 GCGAGAACACATTCATGACGC 60.528 52.381 0.00 0.00 37.29 5.19
6215 7016 1.726248 TGCGAGAACACATTCATGACG 59.274 47.619 0.00 0.00 37.29 4.35
6233 7034 2.274920 GCTTCCTGCTCTGATTTTGC 57.725 50.000 0.00 0.00 38.95 3.68
6254 7055 0.321653 GTGAAACCCATCGGTCTGCT 60.322 55.000 0.00 0.00 43.71 4.24
6344 7146 2.432874 TGTGTATCAACCCTCATACCCG 59.567 50.000 0.00 0.00 0.00 5.28
6362 7164 1.230635 CCAGCTCCGTCCAAGTTGTG 61.231 60.000 1.45 0.00 0.00 3.33
6366 7168 0.182775 AAAACCAGCTCCGTCCAAGT 59.817 50.000 0.00 0.00 0.00 3.16
6382 7184 0.260230 TGCAACTGGACTCCCCAAAA 59.740 50.000 0.00 0.00 46.07 2.44
6395 7197 5.826737 CCAGATAGAAAATCTCCATGCAACT 59.173 40.000 0.00 0.00 0.00 3.16
6410 7212 1.416401 GGGCGGACAATCCAGATAGAA 59.584 52.381 0.00 0.00 35.91 2.10
6425 7227 0.179045 CTCCCTAAACATCTGGGCGG 60.179 60.000 0.00 0.00 40.69 6.13
6426 7228 0.179045 CCTCCCTAAACATCTGGGCG 60.179 60.000 0.00 0.00 40.69 6.13
6453 7255 4.201881 GCCACAAATACTTAATCGGACCAC 60.202 45.833 0.00 0.00 0.00 4.16
6466 7268 7.665561 AATACAAAATTGGTGCCACAAATAC 57.334 32.000 0.00 0.00 33.48 1.89
6552 7355 8.494433 TGAGACCATCCTAACTAGCATAAAAAT 58.506 33.333 0.00 0.00 0.00 1.82
6679 7482 6.051717 CGAGAATTGGATAGGTTGTTCTGAT 58.948 40.000 0.00 0.00 0.00 2.90
6683 7486 4.571176 GGACGAGAATTGGATAGGTTGTTC 59.429 45.833 0.00 0.00 0.00 3.18
6701 7504 2.421751 TTGTTTGGTTGGAAGGACGA 57.578 45.000 0.00 0.00 0.00 4.20
6729 7532 3.808174 GGGACTTGATACGTTGGATAAGC 59.192 47.826 0.00 0.00 0.00 3.09
6740 7543 5.601313 TGATTAGTAGGGTGGGACTTGATAC 59.399 44.000 0.00 0.00 0.00 2.24
6747 7550 7.114095 TGTTATTTTGATTAGTAGGGTGGGAC 58.886 38.462 0.00 0.00 0.00 4.46
6756 7559 9.515226 GGGATAGCCATGTTATTTTGATTAGTA 57.485 33.333 0.00 0.00 35.15 1.82
6760 7563 8.860088 GTTAGGGATAGCCATGTTATTTTGATT 58.140 33.333 0.00 0.00 35.15 2.57
6789 7592 2.628178 TCGATGAGGATATCACACCACC 59.372 50.000 4.83 0.00 41.91 4.61
6790 7593 4.051922 GTTCGATGAGGATATCACACCAC 58.948 47.826 4.83 0.52 41.91 4.16
6794 7597 4.218635 GCTAGGTTCGATGAGGATATCACA 59.781 45.833 4.83 4.76 41.91 3.58
6795 7598 4.381079 GGCTAGGTTCGATGAGGATATCAC 60.381 50.000 4.83 0.00 41.91 3.06
6796 7599 3.764434 GGCTAGGTTCGATGAGGATATCA 59.236 47.826 4.83 0.00 43.70 2.15
6809 7614 0.328258 TTGAGGGCAAGGCTAGGTTC 59.672 55.000 0.00 0.00 0.00 3.62
6852 7657 1.339055 TGATGTAGCTCAAGGTGCACC 60.339 52.381 29.22 29.22 40.64 5.01
6869 7674 1.941209 GCCACACGACATGACTGTGAT 60.941 52.381 20.30 8.30 38.02 3.06
6894 7699 4.956700 ACATCTAGCACTTACAAGAGGCTA 59.043 41.667 14.62 14.62 39.52 3.93
6930 7735 1.229529 ACCCGACACCTCCTTCCAT 60.230 57.895 0.00 0.00 0.00 3.41
6932 7737 2.663196 CACCCGACACCTCCTTCC 59.337 66.667 0.00 0.00 0.00 3.46
6942 7747 3.047877 CCAACGAAGCCACCCGAC 61.048 66.667 0.00 0.00 0.00 4.79
7016 7822 2.095718 GTCTTGCATGAAACCTTCGACC 60.096 50.000 3.51 0.00 0.00 4.79
7029 7835 2.092753 CCTGTAGGACCATGTCTTGCAT 60.093 50.000 0.00 0.00 34.44 3.96
7035 7841 0.905357 AGCACCTGTAGGACCATGTC 59.095 55.000 4.64 0.00 38.94 3.06
7061 7867 6.947733 AGATAGAGAGAGAGAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
7062 7868 6.857848 AGATAGAGAGAGAGAGAGAGAGAGA 58.142 44.000 0.00 0.00 0.00 3.10
7063 7869 6.947733 AGAGATAGAGAGAGAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
7064 7870 6.857848 AGAGATAGAGAGAGAGAGAGAGAGA 58.142 44.000 0.00 0.00 0.00 3.10
7065 7871 8.821686 ATAGAGATAGAGAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
7066 7872 8.619281 AGATAGAGATAGAGAGAGAGAGAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
7067 7873 8.821686 AGATAGAGATAGAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
7068 7874 8.619281 AGAGATAGAGATAGAGAGAGAGAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
7069 7875 8.821686 AGAGATAGAGATAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
7070 7876 8.619281 AGAGAGATAGAGATAGAGAGAGAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
7071 7877 8.821686 AGAGAGATAGAGATAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
7072 7878 8.619281 AGAGAGAGATAGAGATAGAGAGAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
7073 7879 8.821686 AGAGAGAGATAGAGATAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
7074 7880 8.619281 AGAGAGAGAGATAGAGATAGAGAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
7075 7881 8.821686 AGAGAGAGAGATAGAGATAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
7076 7882 8.619281 AGAGAGAGAGAGATAGAGATAGAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
7077 7883 8.821686 AGAGAGAGAGAGATAGAGATAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
7078 7884 8.619281 AGAGAGAGAGAGAGATAGAGATAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
7079 7885 8.821686 AGAGAGAGAGAGAGATAGAGATAGAG 57.178 42.308 0.00 0.00 0.00 2.43
7080 7886 8.619281 AGAGAGAGAGAGAGAGATAGAGATAGA 58.381 40.741 0.00 0.00 0.00 1.98
7081 7887 8.821686 AGAGAGAGAGAGAGAGATAGAGATAG 57.178 42.308 0.00 0.00 0.00 2.08
7082 7888 8.619281 AGAGAGAGAGAGAGAGAGATAGAGATA 58.381 40.741 0.00 0.00 0.00 1.98
7083 7889 7.477864 AGAGAGAGAGAGAGAGAGATAGAGAT 58.522 42.308 0.00 0.00 0.00 2.75
7084 7890 6.857848 AGAGAGAGAGAGAGAGAGATAGAGA 58.142 44.000 0.00 0.00 0.00 3.10
7085 7891 6.947733 AGAGAGAGAGAGAGAGAGAGATAGAG 59.052 46.154 0.00 0.00 0.00 2.43
7086 7892 6.857848 AGAGAGAGAGAGAGAGAGAGATAGA 58.142 44.000 0.00 0.00 0.00 1.98
7087 7893 6.947733 AGAGAGAGAGAGAGAGAGAGAGATAG 59.052 46.154 0.00 0.00 0.00 2.08
7088 7894 6.857848 AGAGAGAGAGAGAGAGAGAGAGATA 58.142 44.000 0.00 0.00 0.00 1.98
7089 7895 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
7090 7896 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
7091 7897 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
7092 7898 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
7093 7899 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
7094 7900 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
7095 7901 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
7096 7902 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
7097 7903 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
7098 7904 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
7099 7905 3.005261 CGGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
7100 7906 2.959030 CGGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
7101 7907 2.546795 GCGGAGAGAGAGAGAGAGAGAG 60.547 59.091 0.00 0.00 0.00 3.20
7102 7908 1.412710 GCGGAGAGAGAGAGAGAGAGA 59.587 57.143 0.00 0.00 0.00 3.10
7103 7909 1.414181 AGCGGAGAGAGAGAGAGAGAG 59.586 57.143 0.00 0.00 0.00 3.20
7104 7910 1.138859 CAGCGGAGAGAGAGAGAGAGA 59.861 57.143 0.00 0.00 0.00 3.10
7105 7911 1.586422 CAGCGGAGAGAGAGAGAGAG 58.414 60.000 0.00 0.00 0.00 3.20
7106 7912 0.463654 GCAGCGGAGAGAGAGAGAGA 60.464 60.000 0.00 0.00 0.00 3.10
7107 7913 1.447317 GGCAGCGGAGAGAGAGAGAG 61.447 65.000 0.00 0.00 0.00 3.20
7108 7914 1.453015 GGCAGCGGAGAGAGAGAGA 60.453 63.158 0.00 0.00 0.00 3.10
7109 7915 1.727511 CTGGCAGCGGAGAGAGAGAG 61.728 65.000 0.00 0.00 0.00 3.20
7110 7916 1.752310 CTGGCAGCGGAGAGAGAGA 60.752 63.158 0.00 0.00 0.00 3.10
7111 7917 1.727511 CTCTGGCAGCGGAGAGAGAG 61.728 65.000 10.34 0.00 38.42 3.20
7112 7918 1.752310 CTCTGGCAGCGGAGAGAGA 60.752 63.158 10.34 0.00 38.42 3.10
7113 7919 2.003658 GACTCTGGCAGCGGAGAGAG 62.004 65.000 21.53 14.50 38.42 3.20
7114 7920 2.036414 ACTCTGGCAGCGGAGAGA 59.964 61.111 21.53 4.89 38.42 3.10
7115 7921 2.346541 TGACTCTGGCAGCGGAGAG 61.347 63.158 10.34 16.50 41.39 3.20
7116 7922 2.283173 TGACTCTGGCAGCGGAGA 60.283 61.111 10.34 6.77 34.11 3.71
7117 7923 2.125753 GTGACTCTGGCAGCGGAG 60.126 66.667 10.34 5.06 35.86 4.63
7118 7924 4.056125 CGTGACTCTGGCAGCGGA 62.056 66.667 10.34 0.00 0.00 5.54
7139 7945 0.251386 TGGGAAGAGCAGAGACGAGT 60.251 55.000 0.00 0.00 0.00 4.18
7153 7959 4.079253 GAGAACCAAAACTGCTATGGGAA 58.921 43.478 0.00 0.00 38.58 3.97
7167 7973 4.199310 CTGTGGAAAGTGAAGAGAACCAA 58.801 43.478 0.00 0.00 0.00 3.67
7188 7995 0.108585 ACCTCACAACCATCAACGCT 59.891 50.000 0.00 0.00 0.00 5.07
7189 7996 0.238289 CACCTCACAACCATCAACGC 59.762 55.000 0.00 0.00 0.00 4.84
7216 8023 2.203252 CACTGCACACCAGGCACT 60.203 61.111 0.00 0.00 46.14 4.40
7230 8037 4.392940 CTTTCCAGGAATCACAGAACACT 58.607 43.478 1.58 0.00 0.00 3.55
7281 8088 3.455910 TGCCATATCTAGCTTGACCAACT 59.544 43.478 0.00 0.00 0.00 3.16
7293 8100 2.953648 TCCGTCGAACTTGCCATATCTA 59.046 45.455 0.00 0.00 0.00 1.98
7311 8118 1.170919 ATACCATCGACGACCCTCCG 61.171 60.000 0.00 0.00 0.00 4.63
7318 8126 3.462982 CCCAAAATCATACCATCGACGA 58.537 45.455 0.00 0.00 0.00 4.20
7411 8219 7.773690 ACGAAGTCCCAATTAGCTATACAAAAT 59.226 33.333 0.00 0.00 29.74 1.82
7423 8231 2.851263 AGTGCACGAAGTCCCAATTA 57.149 45.000 12.01 0.00 41.61 1.40
7451 8260 6.555463 ATTAGAGAATACCGAGGGAAAACA 57.445 37.500 0.00 0.00 0.00 2.83
7542 8351 9.252962 GTTTCTGATGATTCACAAGATGTTTTT 57.747 29.630 0.00 0.00 0.00 1.94
7551 8360 6.957920 TTTCTGGTTTCTGATGATTCACAA 57.042 33.333 0.00 0.00 0.00 3.33
7555 8364 7.388460 AGTCATTTCTGGTTTCTGATGATTC 57.612 36.000 0.00 0.00 0.00 2.52
7583 8392 8.709386 AGCTGATATACTTGTTGAACTAGTTG 57.291 34.615 16.79 0.00 35.83 3.16
7617 8426 1.874129 TCCTGTAGTACACATGGGGG 58.126 55.000 0.00 0.00 36.29 5.40
7618 8427 2.104792 CCATCCTGTAGTACACATGGGG 59.895 54.545 20.34 11.92 36.29 4.96
7619 8428 2.485479 GCCATCCTGTAGTACACATGGG 60.485 54.545 25.22 15.48 35.45 4.00
7620 8429 2.170397 TGCCATCCTGTAGTACACATGG 59.830 50.000 22.32 22.32 36.89 3.66
7661 8724 5.645067 CACTCCAGCTTTCATCATTAACTCA 59.355 40.000 0.00 0.00 0.00 3.41
7667 8730 3.009916 AGTCCACTCCAGCTTTCATCATT 59.990 43.478 0.00 0.00 0.00 2.57
7697 8760 2.556622 TCTTGAGTACTGTCGTGATGCA 59.443 45.455 0.00 0.00 0.00 3.96
7722 8785 2.024414 GCGGCTGAGGGTATTGAAAAT 58.976 47.619 0.00 0.00 0.00 1.82
7763 8826 2.681976 GCTGCTGGGATCAAGCTTTAGA 60.682 50.000 17.56 0.00 0.00 2.10
7786 8849 1.422977 TTTCCCAGCACCACCTAGCA 61.423 55.000 0.00 0.00 0.00 3.49
7812 8875 6.014584 TCACACTTTTCTCAGCTAATGTCCTA 60.015 38.462 0.00 0.00 0.00 2.94
7865 8928 2.032894 GTGTATGTGTGTCTGTGTGTGC 60.033 50.000 0.00 0.00 0.00 4.57
7866 8929 3.457234 AGTGTATGTGTGTCTGTGTGTG 58.543 45.455 0.00 0.00 0.00 3.82
7867 8930 3.132111 TGAGTGTATGTGTGTCTGTGTGT 59.868 43.478 0.00 0.00 0.00 3.72
7868 8931 3.490896 GTGAGTGTATGTGTGTCTGTGTG 59.509 47.826 0.00 0.00 0.00 3.82
7869 8932 3.384789 AGTGAGTGTATGTGTGTCTGTGT 59.615 43.478 0.00 0.00 0.00 3.72
7870 8933 3.982475 AGTGAGTGTATGTGTGTCTGTG 58.018 45.455 0.00 0.00 0.00 3.66
7871 8934 3.636764 TGAGTGAGTGTATGTGTGTCTGT 59.363 43.478 0.00 0.00 0.00 3.41
7872 8935 3.983988 GTGAGTGAGTGTATGTGTGTCTG 59.016 47.826 0.00 0.00 0.00 3.51
7873 8936 3.891977 AGTGAGTGAGTGTATGTGTGTCT 59.108 43.478 0.00 0.00 0.00 3.41
7874 8937 4.230657 GAGTGAGTGAGTGTATGTGTGTC 58.769 47.826 0.00 0.00 0.00 3.67
7875 8938 3.636764 TGAGTGAGTGAGTGTATGTGTGT 59.363 43.478 0.00 0.00 0.00 3.72
7876 8939 3.983988 GTGAGTGAGTGAGTGTATGTGTG 59.016 47.826 0.00 0.00 0.00 3.82
7882 8945 3.020984 TGTGTGTGAGTGAGTGAGTGTA 58.979 45.455 0.00 0.00 0.00 2.90
7887 8950 1.548269 TGTGTGTGTGTGAGTGAGTGA 59.452 47.619 0.00 0.00 0.00 3.41
7909 8972 4.339247 CACTTTCTCTCCATCTCTCTCTCC 59.661 50.000 0.00 0.00 0.00 3.71
7914 8977 4.021544 ACACACACTTTCTCTCCATCTCTC 60.022 45.833 0.00 0.00 0.00 3.20
7915 8978 3.900601 ACACACACTTTCTCTCCATCTCT 59.099 43.478 0.00 0.00 0.00 3.10
7916 8979 3.993081 CACACACACTTTCTCTCCATCTC 59.007 47.826 0.00 0.00 0.00 2.75
7917 8980 3.389329 ACACACACACTTTCTCTCCATCT 59.611 43.478 0.00 0.00 0.00 2.90
7918 8981 3.733337 ACACACACACTTTCTCTCCATC 58.267 45.455 0.00 0.00 0.00 3.51
7919 8982 3.845781 ACACACACACTTTCTCTCCAT 57.154 42.857 0.00 0.00 0.00 3.41
7920 8983 4.746535 TTACACACACACTTTCTCTCCA 57.253 40.909 0.00 0.00 0.00 3.86
7921 8984 6.929606 ACTTATTACACACACACTTTCTCTCC 59.070 38.462 0.00 0.00 0.00 3.71
7928 8991 8.585881 AGAGATACACTTATTACACACACACTT 58.414 33.333 0.00 0.00 0.00 3.16
7931 8994 9.772973 AAAAGAGATACACTTATTACACACACA 57.227 29.630 0.00 0.00 0.00 3.72
7991 9088 0.035152 ACCTCCATGATCGCTTTGCA 60.035 50.000 0.00 0.00 0.00 4.08
8021 9118 4.269183 TGACACCCGCATTTGAGATAATT 58.731 39.130 0.00 0.00 0.00 1.40
8051 9148 8.893727 GGCAAGTACAATACAAGTATTTCTGAT 58.106 33.333 2.82 0.00 33.79 2.90
8073 9170 1.296392 CATGGTCTCGTGGAGGCAA 59.704 57.895 0.00 0.00 35.78 4.52
8140 9237 1.886542 TGAGTACTCAGCTCGCTTTCA 59.113 47.619 21.74 0.00 35.85 2.69
8239 9336 8.660373 AGTGATCTCAATACTTTCTTTTAAGCG 58.340 33.333 0.00 0.00 0.00 4.68
8280 9377 2.613223 GCACTGTCCTAAGTCCTCCAAC 60.613 54.545 0.00 0.00 0.00 3.77
8285 9382 2.616510 GCAATGCACTGTCCTAAGTCCT 60.617 50.000 0.00 0.00 0.00 3.85
8286 9383 1.740025 GCAATGCACTGTCCTAAGTCC 59.260 52.381 0.00 0.00 0.00 3.85
8287 9384 1.740025 GGCAATGCACTGTCCTAAGTC 59.260 52.381 7.79 0.00 0.00 3.01
8288 9385 1.352352 AGGCAATGCACTGTCCTAAGT 59.648 47.619 7.79 0.00 0.00 2.24
8289 9386 1.741706 CAGGCAATGCACTGTCCTAAG 59.258 52.381 7.79 0.00 0.00 2.18
8294 9411 2.099141 TACTCAGGCAATGCACTGTC 57.901 50.000 18.38 0.00 36.17 3.51
8296 9413 2.751259 ACAATACTCAGGCAATGCACTG 59.249 45.455 7.79 12.08 36.07 3.66
8324 9441 4.752101 CCTCCTAAGTCTTTCATATTGGCG 59.248 45.833 0.00 0.00 0.00 5.69
8332 9449 4.024670 GGCTCTACCTCCTAAGTCTTTCA 58.975 47.826 0.00 0.00 34.51 2.69
8391 9508 1.173913 GCCGGTAAAGCTGTTTGGAT 58.826 50.000 1.90 0.00 0.00 3.41
8397 9514 0.816421 AAACACGCCGGTAAAGCTGT 60.816 50.000 1.90 0.00 0.00 4.40
8407 9524 1.153353 ATAACTCACCAAACACGCCG 58.847 50.000 0.00 0.00 0.00 6.46
8445 9562 8.140112 ACAAGAGTTTAGTGATATGGAAGTCT 57.860 34.615 0.00 0.00 32.85 3.24
8501 9619 7.229306 ACTTTGCAATCAGAAGACATTCTACAA 59.771 33.333 0.00 0.00 44.15 2.41
8544 9662 1.318576 CCCCAGTTGTTCGAAGCTTT 58.681 50.000 0.00 0.00 0.00 3.51
8554 9672 1.351017 CATGTGGTAGACCCCAGTTGT 59.649 52.381 0.00 0.00 34.43 3.32
8569 9687 7.824289 TGGAGTAGTTTCTCTATTTTCCATGTG 59.176 37.037 0.00 0.00 34.60 3.21
8580 9698 8.589701 TGTCATGTAATGGAGTAGTTTCTCTA 57.410 34.615 0.00 0.00 46.73 2.43
8636 9754 5.681337 AAGCTTTGCTCTTTAGTGAGTTC 57.319 39.130 0.00 0.00 38.25 3.01
8639 9757 5.448360 GCCATAAGCTTTGCTCTTTAGTGAG 60.448 44.000 3.20 0.00 38.25 3.51
8674 9792 4.233123 ACGATGAAGACGTCAGTAACAA 57.767 40.909 19.50 0.00 40.43 2.83
8684 9802 5.008811 AGGGAAAGTAGATACGATGAAGACG 59.991 44.000 0.00 0.00 0.00 4.18
8689 9809 6.832384 AGTGTTAGGGAAAGTAGATACGATGA 59.168 38.462 0.00 0.00 0.00 2.92
8705 9825 7.768240 ACAAAACAAGAGTAAAAGTGTTAGGG 58.232 34.615 0.00 0.00 33.18 3.53
8718 9838 8.220755 TGCAAATTAGAGTACAAAACAAGAGT 57.779 30.769 0.00 0.00 0.00 3.24
8769 9889 2.842208 TTCTGCTGAAAACAACACCG 57.158 45.000 3.21 0.00 0.00 4.94
8771 9891 7.306749 CCATAACAATTCTGCTGAAAACAACAC 60.307 37.037 10.27 0.00 35.63 3.32
8772 9892 6.700960 CCATAACAATTCTGCTGAAAACAACA 59.299 34.615 10.27 0.00 35.63 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.