Multiple sequence alignment - TraesCS5A01G117500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G117500 chr5A 100.000 6329 0 0 1 6329 239118875 239125203 0.000000e+00 11688.0
1 TraesCS5A01G117500 chr5A 97.516 322 4 2 6008 6329 239135416 239135733 1.200000e-151 547.0
2 TraesCS5A01G117500 chr5A 98.246 228 3 1 6102 6329 239147300 239147074 1.280000e-106 398.0
3 TraesCS5A01G117500 chr5A 98.230 226 3 1 6102 6327 700994875 700995099 1.650000e-105 394.0
4 TraesCS5A01G117500 chr5A 97.368 228 5 1 6102 6329 158845491 158845717 2.770000e-103 387.0
5 TraesCS5A01G117500 chr5A 96.930 228 6 1 6102 6329 8777017 8776791 1.290000e-101 381.0
6 TraesCS5A01G117500 chr5D 95.020 5361 139 40 1 5268 156579476 156574151 0.000000e+00 8303.0
7 TraesCS5A01G117500 chr5D 89.606 558 55 3 5549 6105 73831196 73830641 0.000000e+00 706.0
8 TraesCS5A01G117500 chr5D 89.362 564 52 8 5545 6105 168175866 168176424 0.000000e+00 702.0
9 TraesCS5A01G117500 chr5D 92.409 303 20 2 5312 5611 156574150 156573848 4.530000e-116 429.0
10 TraesCS5A01G117500 chr5B 95.268 1099 24 6 225 1296 191037733 191036636 0.000000e+00 1716.0
11 TraesCS5A01G117500 chr5B 94.136 938 29 11 4390 5309 191030493 191029564 0.000000e+00 1404.0
12 TraesCS5A01G117500 chr5B 95.257 759 24 2 3647 4395 191031303 191030547 0.000000e+00 1192.0
13 TraesCS5A01G117500 chr5B 92.785 790 39 6 1807 2593 191036027 191035253 0.000000e+00 1127.0
14 TraesCS5A01G117500 chr5B 86.247 778 90 11 5330 6093 190721651 190720877 0.000000e+00 828.0
15 TraesCS5A01G117500 chr5B 90.357 560 46 7 5549 6105 179247351 179246797 0.000000e+00 728.0
16 TraesCS5A01G117500 chr5B 94.118 476 24 3 1337 1809 191036624 191036150 0.000000e+00 721.0
17 TraesCS5A01G117500 chr5B 95.143 453 22 0 3200 3652 191034164 191033712 0.000000e+00 715.0
18 TraesCS5A01G117500 chr5B 87.358 530 18 17 2686 3194 191034794 191034293 4.280000e-156 562.0
19 TraesCS5A01G117500 chr5B 91.700 253 7 6 1 240 191038023 191037772 7.860000e-89 339.0
20 TraesCS5A01G117500 chr1D 90.553 561 42 11 5549 6105 143398757 143398204 0.000000e+00 732.0
21 TraesCS5A01G117500 chr1D 89.146 562 49 11 5548 6105 143403097 143402544 0.000000e+00 689.0
22 TraesCS5A01G117500 chr1D 89.785 186 19 0 1034 1219 140519696 140519881 8.200000e-59 239.0
23 TraesCS5A01G117500 chr1D 81.250 224 20 10 3267 3477 468969201 468969415 1.830000e-35 161.0
24 TraesCS5A01G117500 chr3D 89.693 553 54 3 5551 6103 213478689 213478140 0.000000e+00 702.0
25 TraesCS5A01G117500 chr3D 83.652 575 76 16 5538 6105 242785911 242786474 5.620000e-145 525.0
26 TraesCS5A01G117500 chr3D 83.656 569 79 11 5541 6105 244527289 244526731 2.020000e-144 523.0
27 TraesCS5A01G117500 chr3A 89.493 552 55 3 5549 6100 308766485 308767033 0.000000e+00 695.0
28 TraesCS5A01G117500 chr3A 98.246 228 3 1 6102 6329 567173657 567173883 1.280000e-106 398.0
29 TraesCS5A01G117500 chr3A 97.368 228 5 1 6102 6329 157818785 157818559 2.770000e-103 387.0
30 TraesCS5A01G117500 chr3A 89.785 186 19 0 1034 1219 555042272 555042087 8.200000e-59 239.0
31 TraesCS5A01G117500 chr4D 89.068 558 57 4 5549 6105 222807331 222807885 0.000000e+00 689.0
32 TraesCS5A01G117500 chr7D 83.618 586 78 17 5530 6105 296467588 296468165 9.340000e-148 534.0
33 TraesCS5A01G117500 chr6D 83.803 568 76 14 5545 6105 214001300 214000742 5.620000e-145 525.0
34 TraesCS5A01G117500 chrUn 83.627 568 81 10 5537 6100 210290493 210289934 2.020000e-144 523.0
35 TraesCS5A01G117500 chrUn 83.538 571 78 14 5535 6100 166622337 166621778 2.620000e-143 520.0
36 TraesCS5A01G117500 chr6B 83.507 576 78 14 5536 6105 298282035 298281471 7.270000e-144 521.0
37 TraesCS5A01G117500 chr6B 89.542 153 12 4 1296 1446 275293843 275293993 2.330000e-44 191.0
38 TraesCS5A01G117500 chr6B 81.633 196 21 11 1989 2181 713875916 713875733 1.420000e-31 148.0
39 TraesCS5A01G117500 chr6B 81.026 195 22 11 1989 2180 675072611 675072429 2.380000e-29 141.0
40 TraesCS5A01G117500 chr4A 83.538 571 78 14 5535 6100 271736493 271735934 2.620000e-143 520.0
41 TraesCS5A01G117500 chr4A 91.743 327 21 6 1243 1566 249770796 249771119 3.480000e-122 449.0
42 TraesCS5A01G117500 chr1A 97.380 229 5 1 6101 6329 156026827 156026600 7.690000e-104 388.0
43 TraesCS5A01G117500 chr1A 89.247 186 20 0 1034 1219 150456402 150456217 3.820000e-57 233.0
44 TraesCS5A01G117500 chr1A 85.567 97 7 3 66 155 561927200 561927296 1.880000e-15 95.3
45 TraesCS5A01G117500 chr1A 83.333 96 8 3 3388 3477 561927998 561928091 1.460000e-11 82.4
46 TraesCS5A01G117500 chr7A 97.368 228 5 1 6102 6329 547917853 547917627 2.770000e-103 387.0
47 TraesCS5A01G117500 chr3B 89.785 186 19 0 1034 1219 151444539 151444724 8.200000e-59 239.0
48 TraesCS5A01G117500 chr1B 89.247 186 20 0 1034 1219 198153439 198153254 3.820000e-57 233.0
49 TraesCS5A01G117500 chr1B 82.143 196 20 11 1989 2181 687569029 687569212 3.060000e-33 154.0
50 TraesCS5A01G117500 chr1B 84.713 157 15 7 2028 2181 19417696 19417546 1.420000e-31 148.0
51 TraesCS5A01G117500 chr7B 84.713 157 15 7 2028 2181 711953160 711953010 1.420000e-31 148.0
52 TraesCS5A01G117500 chr2A 81.633 196 21 11 1989 2181 83950678 83950861 1.420000e-31 148.0
53 TraesCS5A01G117500 chr2B 81.026 195 22 12 1989 2180 311161490 311161672 2.380000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G117500 chr5A 239118875 239125203 6328 False 11688.0 11688 100.000000 1 6329 1 chr5A.!!$F2 6328
1 TraesCS5A01G117500 chr5D 156573848 156579476 5628 True 4366.0 8303 93.714500 1 5611 2 chr5D.!!$R2 5610
2 TraesCS5A01G117500 chr5D 73830641 73831196 555 True 706.0 706 89.606000 5549 6105 1 chr5D.!!$R1 556
3 TraesCS5A01G117500 chr5D 168175866 168176424 558 False 702.0 702 89.362000 5545 6105 1 chr5D.!!$F1 560
4 TraesCS5A01G117500 chr5B 191029564 191038023 8459 True 972.0 1716 93.220625 1 5309 8 chr5B.!!$R3 5308
5 TraesCS5A01G117500 chr5B 190720877 190721651 774 True 828.0 828 86.247000 5330 6093 1 chr5B.!!$R2 763
6 TraesCS5A01G117500 chr5B 179246797 179247351 554 True 728.0 728 90.357000 5549 6105 1 chr5B.!!$R1 556
7 TraesCS5A01G117500 chr1D 143398204 143403097 4893 True 710.5 732 89.849500 5548 6105 2 chr1D.!!$R1 557
8 TraesCS5A01G117500 chr3D 213478140 213478689 549 True 702.0 702 89.693000 5551 6103 1 chr3D.!!$R1 552
9 TraesCS5A01G117500 chr3D 242785911 242786474 563 False 525.0 525 83.652000 5538 6105 1 chr3D.!!$F1 567
10 TraesCS5A01G117500 chr3D 244526731 244527289 558 True 523.0 523 83.656000 5541 6105 1 chr3D.!!$R2 564
11 TraesCS5A01G117500 chr3A 308766485 308767033 548 False 695.0 695 89.493000 5549 6100 1 chr3A.!!$F1 551
12 TraesCS5A01G117500 chr4D 222807331 222807885 554 False 689.0 689 89.068000 5549 6105 1 chr4D.!!$F1 556
13 TraesCS5A01G117500 chr7D 296467588 296468165 577 False 534.0 534 83.618000 5530 6105 1 chr7D.!!$F1 575
14 TraesCS5A01G117500 chr6D 214000742 214001300 558 True 525.0 525 83.803000 5545 6105 1 chr6D.!!$R1 560
15 TraesCS5A01G117500 chrUn 210289934 210290493 559 True 523.0 523 83.627000 5537 6100 1 chrUn.!!$R2 563
16 TraesCS5A01G117500 chrUn 166621778 166622337 559 True 520.0 520 83.538000 5535 6100 1 chrUn.!!$R1 565
17 TraesCS5A01G117500 chr6B 298281471 298282035 564 True 521.0 521 83.507000 5536 6105 1 chr6B.!!$R1 569
18 TraesCS5A01G117500 chr4A 271735934 271736493 559 True 520.0 520 83.538000 5535 6100 1 chr4A.!!$R1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1066 3.243535 TGCTGAATCTTCGATATCTGCGT 60.244 43.478 0.34 0.0 38.94 5.24 F
1961 2202 0.108585 ACGCAATTCTCCTGTGTGGT 59.891 50.000 0.00 0.0 36.21 4.16 F
2747 3359 0.109365 CCTGCTCTCTCACTGACACG 60.109 60.000 0.00 0.0 0.00 4.49 F
3102 3739 1.187087 AACTGAGCGTCTTCCCCTAG 58.813 55.000 0.00 0.0 0.00 3.02 F
3294 4054 2.341846 TGAGGGCTTCGTGTTTTCTT 57.658 45.000 0.00 0.0 0.00 2.52 F
5008 8267 1.524165 GCTCAGGCTCAGGCTCATG 60.524 63.158 0.00 0.0 35.88 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2301 1.757118 ACTACGCATGCATACACTCCT 59.243 47.619 19.57 0.00 0.00 3.69 R
3352 4112 1.072806 AGACAGGCAAGCACTCATCAA 59.927 47.619 0.00 0.00 0.00 2.57 R
4004 7188 2.537625 GTGAGCTGTCTATCACATTCGC 59.462 50.000 0.00 0.00 44.21 4.70 R
4861 8120 0.531532 GCGATAGTCACCTGCTGCAT 60.532 55.000 1.31 0.00 39.35 3.96 R
5090 8349 0.892814 GCAAGAGCTCCTGCAGGTTT 60.893 55.000 31.58 18.15 42.74 3.27 R
6263 13886 0.034477 TTCTCCCCCGGCAAGATTTC 60.034 55.000 0.00 0.00 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 190 6.076557 CGTCTCTTCTTCTTTGATGCTTTTC 58.923 40.000 0.00 0.00 0.00 2.29
957 1029 8.739461 CACAGCATTTGCATATATATATTTGCG 58.261 33.333 24.19 15.32 41.53 4.85
984 1056 5.336990 CGTGTAAACTTTTGCTGAATCTTCG 59.663 40.000 0.00 0.00 0.00 3.79
985 1057 6.427150 GTGTAAACTTTTGCTGAATCTTCGA 58.573 36.000 0.00 0.00 0.00 3.71
987 1059 8.227791 GTGTAAACTTTTGCTGAATCTTCGATA 58.772 33.333 0.00 0.00 0.00 2.92
988 1060 8.946085 TGTAAACTTTTGCTGAATCTTCGATAT 58.054 29.630 0.00 0.00 0.00 1.63
989 1061 9.427127 GTAAACTTTTGCTGAATCTTCGATATC 57.573 33.333 0.00 0.00 0.00 1.63
990 1062 7.856145 AACTTTTGCTGAATCTTCGATATCT 57.144 32.000 0.34 0.00 0.00 1.98
992 1064 5.663795 TTTGCTGAATCTTCGATATCTGC 57.336 39.130 0.34 10.21 37.30 4.26
993 1065 3.311966 TGCTGAATCTTCGATATCTGCG 58.688 45.455 0.34 0.00 38.94 5.18
994 1066 3.243535 TGCTGAATCTTCGATATCTGCGT 60.244 43.478 0.34 0.00 38.94 5.24
995 1067 4.023193 TGCTGAATCTTCGATATCTGCGTA 60.023 41.667 0.34 0.00 38.94 4.42
1076 1161 2.921634 TCAAGAGGATCGAGAACACG 57.078 50.000 0.00 0.00 42.67 4.49
1228 1313 2.872245 CCAACAACAGGTCTGTGTGTAG 59.128 50.000 4.22 4.14 44.13 2.74
1243 1342 1.135333 GTGTAGGTCTACAGCTCCAGC 59.865 57.143 10.72 0.00 45.61 4.85
1432 1534 2.888447 AAGGCTGCTGGTCGCTTCT 61.888 57.895 0.00 0.00 40.11 2.85
1731 1839 0.813184 CTCACCCATGGACAATGTGC 59.187 55.000 15.22 0.00 34.11 4.57
1783 1892 4.202121 GCCTTAGGTCATCGATAGTGTCAA 60.202 45.833 0.00 0.00 37.40 3.18
1805 1916 1.593933 GTGTGGACGCGTGAAACTTAA 59.406 47.619 20.70 0.00 31.75 1.85
1845 2083 3.170717 AGAACGTTGGACTGGGAGATTA 58.829 45.455 5.00 0.00 0.00 1.75
1846 2084 3.775316 AGAACGTTGGACTGGGAGATTAT 59.225 43.478 5.00 0.00 0.00 1.28
1892 2130 1.454653 GCTAGACGTTCGTTTGTGTCC 59.545 52.381 0.00 0.00 31.75 4.02
1961 2202 0.108585 ACGCAATTCTCCTGTGTGGT 59.891 50.000 0.00 0.00 36.21 4.16
1965 2206 3.252215 CGCAATTCTCCTGTGTGGTTTTA 59.748 43.478 0.00 0.00 37.07 1.52
2036 2277 5.404366 ACATACTGACGTGTGTGTTTCATAC 59.596 40.000 0.00 0.00 42.82 2.39
2225 2467 3.120616 CCACTGTATTTGTGTCGTACGTG 59.879 47.826 16.05 0.87 33.92 4.49
2226 2468 2.727798 ACTGTATTTGTGTCGTACGTGC 59.272 45.455 16.05 10.15 0.00 5.34
2227 2469 2.727278 CTGTATTTGTGTCGTACGTGCA 59.273 45.455 16.05 12.68 0.00 4.57
2251 2493 5.521735 AGCAGACATTTTCTTGTATAGCGAG 59.478 40.000 0.00 0.00 28.96 5.03
2405 2647 6.594788 ACACTAAAGAAATGCAACCATGAT 57.405 33.333 0.00 0.00 0.00 2.45
2627 2907 6.071984 TGTTCTAAAGATACCCTGCCAAAAA 58.928 36.000 0.00 0.00 0.00 1.94
2747 3359 0.109365 CCTGCTCTCTCACTGACACG 60.109 60.000 0.00 0.00 0.00 4.49
2916 3546 1.681793 CGTCCTAAAGCTAGCTGCCTA 59.318 52.381 20.16 9.46 44.23 3.93
3000 3630 1.672363 ACCATACGTGCATGCATGAAG 59.328 47.619 39.42 27.30 36.80 3.02
3001 3631 1.598676 CCATACGTGCATGCATGAAGC 60.599 52.381 39.42 19.49 45.96 3.86
3002 3632 1.332686 CATACGTGCATGCATGAAGCT 59.667 47.619 39.42 22.97 45.94 3.74
3003 3633 2.307934 TACGTGCATGCATGAAGCTA 57.692 45.000 39.42 21.99 45.94 3.32
3004 3634 1.452110 ACGTGCATGCATGAAGCTAA 58.548 45.000 39.42 5.64 45.94 3.09
3027 3657 6.537453 AGCTAGTCATTGTGTTATCTCAGT 57.463 37.500 0.00 0.00 0.00 3.41
3035 3672 7.219154 GTCATTGTGTTATCTCAGTTAGTCTCG 59.781 40.741 0.00 0.00 0.00 4.04
3102 3739 1.187087 AACTGAGCGTCTTCCCCTAG 58.813 55.000 0.00 0.00 0.00 3.02
3173 3810 4.085055 CGTCGATACTGTTCAATGTATGCC 60.085 45.833 0.00 0.00 30.49 4.40
3230 3990 6.944557 TTGAGCGCATATATGTATGTACAC 57.055 37.500 11.47 3.72 39.90 2.90
3232 3992 5.861787 TGAGCGCATATATGTATGTACACAC 59.138 40.000 11.47 0.00 39.90 3.82
3264 4024 6.348704 GCCAAACTTTATGCTTAAGTAACCGA 60.349 38.462 4.02 0.00 34.88 4.69
3271 4031 9.887406 CTTTATGCTTAAGTAACCGAAAGAAAA 57.113 29.630 4.02 0.00 0.00 2.29
3284 4044 5.125578 ACCGAAAGAAAATATTGAGGGCTTC 59.874 40.000 0.00 0.00 0.00 3.86
3294 4054 2.341846 TGAGGGCTTCGTGTTTTCTT 57.658 45.000 0.00 0.00 0.00 2.52
3352 4112 4.397103 CACACATGCATCAAACTAGGTCAT 59.603 41.667 0.00 0.00 0.00 3.06
3490 4250 8.986847 CATAGAAGTCAATGCTCAGGTAATTAG 58.013 37.037 0.00 0.00 0.00 1.73
3680 6854 6.438763 GCCATGATTTAAATCTTTAGGACCG 58.561 40.000 24.77 8.42 36.39 4.79
3748 6922 6.491714 AGCAGTCATGTCTACAATTCCTAT 57.508 37.500 0.00 0.00 0.00 2.57
3750 6924 7.437748 AGCAGTCATGTCTACAATTCCTATAC 58.562 38.462 0.00 0.00 0.00 1.47
3889 7073 2.961741 ACATCGTCTAGGATCAGCACAT 59.038 45.455 0.00 0.00 0.00 3.21
3982 7166 8.885494 TTGGTTTTTCTAACTCAATTGGAATG 57.115 30.769 5.42 0.00 37.59 2.67
4004 7188 8.792830 AATGGGATGACGTGGATATTAATTAG 57.207 34.615 0.00 0.00 0.00 1.73
4317 7501 4.341235 GGGCCAGGAAGGTATATTTGAAAC 59.659 45.833 4.39 0.00 40.61 2.78
4674 7916 7.730364 CCAATCTTGGCTTTATTATACGTCT 57.270 36.000 0.00 0.00 42.21 4.18
4676 7918 8.070171 CCAATCTTGGCTTTATTATACGTCTTG 58.930 37.037 0.00 0.00 42.21 3.02
4678 7920 6.110033 TCTTGGCTTTATTATACGTCTTGCA 58.890 36.000 0.00 0.00 0.00 4.08
4680 7922 6.935741 TGGCTTTATTATACGTCTTGCATT 57.064 33.333 0.00 0.00 0.00 3.56
4762 8008 4.838423 TGATCTCAGAACCAAGGTACAGAA 59.162 41.667 0.00 0.00 0.00 3.02
5007 8266 2.744243 GGCTCAGGCTCAGGCTCAT 61.744 63.158 4.26 0.00 35.88 2.90
5008 8267 1.524165 GCTCAGGCTCAGGCTCATG 60.524 63.158 0.00 0.00 35.88 3.07
5009 8268 1.524165 CTCAGGCTCAGGCTCATGC 60.524 63.158 0.00 0.00 35.88 4.06
5010 8269 1.973816 CTCAGGCTCAGGCTCATGCT 61.974 60.000 0.00 0.00 35.88 3.79
5011 8270 1.524165 CAGGCTCAGGCTCATGCTC 60.524 63.158 0.00 0.00 35.88 4.26
5012 8271 1.993948 AGGCTCAGGCTCATGCTCA 60.994 57.895 0.00 0.00 39.59 4.26
5143 8402 5.459762 CACACTGCAATAAAACTGGAAAGTG 59.540 40.000 0.00 0.00 38.70 3.16
5207 8466 4.932200 GTCTGGCTAAGATATATGTGTGCC 59.068 45.833 15.24 15.24 37.23 5.01
5221 8480 4.314740 TGTGTGCCAAGTTTTATTGTCC 57.685 40.909 0.00 0.00 0.00 4.02
5291 8550 8.618677 AGAATTACTCACGTATATTCTGACGAA 58.381 33.333 2.88 0.00 41.60 3.85
5438 8698 7.461107 TGAAGTCTTATAAAGCAAATACACGC 58.539 34.615 0.00 0.00 0.00 5.34
5452 8721 0.523072 ACACGCATCAACTCAATGCC 59.477 50.000 2.76 0.00 45.34 4.40
5464 8733 1.377725 CAATGCCACCTTCCTCGCT 60.378 57.895 0.00 0.00 0.00 4.93
5523 8794 2.616330 CCTCGCACCAACGCACATT 61.616 57.895 0.00 0.00 0.00 2.71
5658 13272 7.696992 TGAATTACCAGGTACTTTCATTTCC 57.303 36.000 15.78 0.00 34.60 3.13
5704 13318 8.953313 CATGAGAATATGATGCTGCCTAAATTA 58.047 33.333 0.00 0.00 0.00 1.40
5716 13330 7.930217 TGCTGCCTAAATTAGATACATTTGTC 58.070 34.615 0.83 0.00 0.00 3.18
5764 13381 2.303022 GGACAAGAGGGATGAACACTGA 59.697 50.000 0.00 0.00 29.26 3.41
5790 13407 4.914983 AGAAACAAGCATGGAGATGAAGA 58.085 39.130 0.00 0.00 0.00 2.87
5885 13504 6.049149 ACAAGGACATGGACGAAATATACAG 58.951 40.000 0.00 0.00 0.00 2.74
5891 13510 4.681074 TGGACGAAATATACAGGATGCA 57.319 40.909 0.00 0.00 42.53 3.96
5892 13511 5.227569 TGGACGAAATATACAGGATGCAT 57.772 39.130 0.00 0.00 42.53 3.96
5968 13587 2.168313 GGCCAGACCCATGTAATTTTGG 59.832 50.000 0.00 0.00 0.00 3.28
6061 13683 1.376037 GCTCCAAGGGGTCACGAAG 60.376 63.158 0.00 0.00 34.93 3.79
6062 13684 2.058675 CTCCAAGGGGTCACGAAGT 58.941 57.895 0.00 0.00 36.79 3.01
6070 13693 1.452801 GGTCACGAAGTTTCCCCCA 59.547 57.895 0.00 0.00 41.61 4.96
6107 13730 4.296265 CCCTTAGGGCGTGTTGAC 57.704 61.111 3.52 0.00 35.35 3.18
6118 13741 1.730176 CGTGTTGACGCTCAAAAGTG 58.270 50.000 2.65 0.00 38.22 3.16
6119 13742 1.594518 CGTGTTGACGCTCAAAAGTGG 60.595 52.381 2.65 0.00 38.22 4.00
6120 13743 0.380378 TGTTGACGCTCAAAAGTGGC 59.620 50.000 2.65 0.00 41.76 5.01
6122 13745 2.021722 TGACGCTCAAAAGTGGCAC 58.978 52.632 10.29 10.29 46.18 5.01
6123 13746 1.082756 GACGCTCAAAAGTGGCACG 60.083 57.895 12.71 0.00 41.01 5.34
6124 13747 1.495584 GACGCTCAAAAGTGGCACGA 61.496 55.000 12.71 2.22 41.01 4.35
6125 13748 0.884704 ACGCTCAAAAGTGGCACGAT 60.885 50.000 12.71 2.19 37.33 3.73
6126 13749 0.179215 CGCTCAAAAGTGGCACGATC 60.179 55.000 12.71 0.00 0.00 3.69
6127 13750 0.874390 GCTCAAAAGTGGCACGATCA 59.126 50.000 12.71 0.00 0.00 2.92
6128 13751 1.470098 GCTCAAAAGTGGCACGATCAT 59.530 47.619 12.71 0.00 0.00 2.45
6129 13752 2.677836 GCTCAAAAGTGGCACGATCATA 59.322 45.455 12.71 0.00 0.00 2.15
6130 13753 3.126858 GCTCAAAAGTGGCACGATCATAA 59.873 43.478 12.71 0.00 0.00 1.90
6131 13754 4.379394 GCTCAAAAGTGGCACGATCATAAA 60.379 41.667 12.71 0.00 0.00 1.40
6132 13755 5.295431 TCAAAAGTGGCACGATCATAAAG 57.705 39.130 12.71 0.00 0.00 1.85
6133 13756 3.764885 AAAGTGGCACGATCATAAAGC 57.235 42.857 12.71 0.00 0.00 3.51
6134 13757 2.401583 AGTGGCACGATCATAAAGCA 57.598 45.000 12.71 0.00 0.00 3.91
6135 13758 2.283298 AGTGGCACGATCATAAAGCAG 58.717 47.619 12.71 0.00 0.00 4.24
6136 13759 1.016627 TGGCACGATCATAAAGCAGC 58.983 50.000 0.00 0.00 0.00 5.25
6137 13760 1.016627 GGCACGATCATAAAGCAGCA 58.983 50.000 0.00 0.00 0.00 4.41
6138 13761 1.605710 GGCACGATCATAAAGCAGCAT 59.394 47.619 0.00 0.00 0.00 3.79
6139 13762 2.603892 GGCACGATCATAAAGCAGCATG 60.604 50.000 0.00 0.00 40.87 4.06
6156 13779 2.030412 GCCGGGGCAAAAACCTTG 59.970 61.111 2.18 0.00 41.49 3.61
6157 13780 2.030412 CCGGGGCAAAAACCTTGC 59.970 61.111 0.00 0.78 44.22 4.01
6158 13781 2.506957 CCGGGGCAAAAACCTTGCT 61.507 57.895 9.15 0.00 44.36 3.91
6159 13782 1.300853 CGGGGCAAAAACCTTGCTG 60.301 57.895 9.15 0.00 44.36 4.41
6160 13783 1.071299 GGGGCAAAAACCTTGCTGG 59.929 57.895 9.15 0.00 44.36 4.85
6161 13784 1.071299 GGGCAAAAACCTTGCTGGG 59.929 57.895 9.15 0.00 44.36 4.45
6162 13785 1.071299 GGCAAAAACCTTGCTGGGG 59.929 57.895 9.15 0.00 44.36 4.96
6163 13786 1.695114 GGCAAAAACCTTGCTGGGGT 61.695 55.000 9.15 0.00 44.36 4.95
6164 13787 1.044611 GCAAAAACCTTGCTGGGGTA 58.955 50.000 2.27 0.00 41.87 3.69
6165 13788 1.414550 GCAAAAACCTTGCTGGGGTAA 59.585 47.619 2.27 0.00 41.87 2.85
6166 13789 2.158885 GCAAAAACCTTGCTGGGGTAAA 60.159 45.455 2.27 0.00 41.87 2.01
6167 13790 3.682999 GCAAAAACCTTGCTGGGGTAAAA 60.683 43.478 2.27 0.00 41.87 1.52
6168 13791 4.713553 CAAAAACCTTGCTGGGGTAAAAT 58.286 39.130 1.69 0.00 41.11 1.82
6169 13792 4.617253 AAAACCTTGCTGGGGTAAAATC 57.383 40.909 1.69 0.00 41.11 2.17
6170 13793 3.542969 AACCTTGCTGGGGTAAAATCT 57.457 42.857 1.69 0.00 41.11 2.40
6171 13794 3.542969 ACCTTGCTGGGGTAAAATCTT 57.457 42.857 1.69 0.00 41.11 2.40
6172 13795 3.165071 ACCTTGCTGGGGTAAAATCTTG 58.835 45.455 1.69 0.00 41.11 3.02
6173 13796 2.094026 CCTTGCTGGGGTAAAATCTTGC 60.094 50.000 0.00 0.00 0.00 4.01
6174 13797 1.555967 TGCTGGGGTAAAATCTTGCC 58.444 50.000 0.00 0.00 36.62 4.52
6175 13798 0.455815 GCTGGGGTAAAATCTTGCCG 59.544 55.000 0.00 0.00 38.15 5.69
6176 13799 1.102978 CTGGGGTAAAATCTTGCCGG 58.897 55.000 0.00 0.00 38.15 6.13
6177 13800 0.406361 TGGGGTAAAATCTTGCCGGT 59.594 50.000 1.90 0.00 38.15 5.28
6178 13801 0.815095 GGGGTAAAATCTTGCCGGTG 59.185 55.000 1.90 0.00 38.15 4.94
6179 13802 1.541379 GGGTAAAATCTTGCCGGTGT 58.459 50.000 1.90 0.00 38.15 4.16
6180 13803 1.201414 GGGTAAAATCTTGCCGGTGTG 59.799 52.381 1.90 0.00 38.15 3.82
6181 13804 2.156098 GGTAAAATCTTGCCGGTGTGA 58.844 47.619 1.90 0.00 0.00 3.58
6182 13805 2.554893 GGTAAAATCTTGCCGGTGTGAA 59.445 45.455 1.90 0.00 0.00 3.18
6183 13806 3.004944 GGTAAAATCTTGCCGGTGTGAAA 59.995 43.478 1.90 0.00 0.00 2.69
6184 13807 3.369546 AAAATCTTGCCGGTGTGAAAG 57.630 42.857 1.90 0.00 0.00 2.62
6185 13808 0.598065 AATCTTGCCGGTGTGAAAGC 59.402 50.000 1.90 0.00 0.00 3.51
6186 13809 0.250901 ATCTTGCCGGTGTGAAAGCT 60.251 50.000 1.90 0.00 0.00 3.74
6187 13810 0.465460 TCTTGCCGGTGTGAAAGCTT 60.465 50.000 1.90 0.00 0.00 3.74
6188 13811 0.318107 CTTGCCGGTGTGAAAGCTTG 60.318 55.000 1.90 0.00 0.00 4.01
6189 13812 2.050077 GCCGGTGTGAAAGCTTGC 60.050 61.111 1.90 0.00 0.00 4.01
6190 13813 2.644992 CCGGTGTGAAAGCTTGCC 59.355 61.111 0.00 0.00 0.00 4.52
6191 13814 2.252260 CGGTGTGAAAGCTTGCCG 59.748 61.111 0.00 6.02 0.00 5.69
6192 13815 2.644992 GGTGTGAAAGCTTGCCGG 59.355 61.111 0.00 0.00 0.00 6.13
6193 13816 2.193536 GGTGTGAAAGCTTGCCGGT 61.194 57.895 1.90 0.00 0.00 5.28
6194 13817 1.008538 GTGTGAAAGCTTGCCGGTG 60.009 57.895 1.90 0.00 0.00 4.94
6195 13818 1.453015 TGTGAAAGCTTGCCGGTGT 60.453 52.632 1.90 0.00 0.00 4.16
6196 13819 0.179043 TGTGAAAGCTTGCCGGTGTA 60.179 50.000 1.90 0.00 0.00 2.90
6197 13820 0.948678 GTGAAAGCTTGCCGGTGTAA 59.051 50.000 1.90 0.00 0.00 2.41
6198 13821 1.335496 GTGAAAGCTTGCCGGTGTAAA 59.665 47.619 1.90 0.00 0.00 2.01
6199 13822 1.606668 TGAAAGCTTGCCGGTGTAAAG 59.393 47.619 1.90 3.62 0.00 1.85
6200 13823 0.958822 AAAGCTTGCCGGTGTAAAGG 59.041 50.000 1.90 0.00 0.00 3.11
6206 13829 3.274067 CCGGTGTAAAGGCTTGCC 58.726 61.111 0.00 2.97 0.00 4.52
6207 13830 2.686816 CCGGTGTAAAGGCTTGCCG 61.687 63.158 19.14 19.14 38.99 5.69
6208 13831 2.686816 CGGTGTAAAGGCTTGCCGG 61.687 63.158 18.64 0.00 36.05 6.13
6209 13832 2.566529 GTGTAAAGGCTTGCCGGC 59.433 61.111 22.73 22.73 38.75 6.13
6210 13833 3.053291 TGTAAAGGCTTGCCGGCG 61.053 61.111 23.90 9.82 44.22 6.46
6211 13834 3.053896 GTAAAGGCTTGCCGGCGT 61.054 61.111 23.90 0.00 44.22 5.68
6212 13835 3.053291 TAAAGGCTTGCCGGCGTG 61.053 61.111 23.90 17.97 44.22 5.34
6218 13841 4.404654 CTTGCCGGCGTGGAAAGC 62.405 66.667 23.90 0.63 46.69 3.51
6219 13842 4.947147 TTGCCGGCGTGGAAAGCT 62.947 61.111 23.90 0.00 42.50 3.74
6220 13843 4.947147 TGCCGGCGTGGAAAGCTT 62.947 61.111 23.90 0.00 42.50 3.74
6221 13844 4.404654 GCCGGCGTGGAAAGCTTG 62.405 66.667 12.58 0.00 42.50 4.01
6222 13845 4.404654 CCGGCGTGGAAAGCTTGC 62.405 66.667 6.01 0.00 42.50 4.01
6223 13846 4.404654 CGGCGTGGAAAGCTTGCC 62.405 66.667 17.58 17.58 42.50 4.52
6224 13847 4.404654 GGCGTGGAAAGCTTGCCG 62.405 66.667 19.09 8.81 42.50 5.69
6225 13848 4.404654 GCGTGGAAAGCTTGCCGG 62.405 66.667 19.09 13.92 38.67 6.13
6226 13849 4.404654 CGTGGAAAGCTTGCCGGC 62.405 66.667 22.73 22.73 0.00 6.13
6227 13850 3.294493 GTGGAAAGCTTGCCGGCA 61.294 61.111 29.03 29.03 34.17 5.69
6228 13851 3.294493 TGGAAAGCTTGCCGGCAC 61.294 61.111 32.95 19.93 34.17 5.01
6229 13852 3.294493 GGAAAGCTTGCCGGCACA 61.294 61.111 32.95 19.43 34.17 4.57
6230 13853 2.256461 GAAAGCTTGCCGGCACAG 59.744 61.111 32.95 28.01 34.17 3.66
6231 13854 2.203337 AAAGCTTGCCGGCACAGA 60.203 55.556 32.95 14.96 34.17 3.41
6232 13855 1.795170 GAAAGCTTGCCGGCACAGAA 61.795 55.000 32.95 14.51 34.17 3.02
6233 13856 1.391157 AAAGCTTGCCGGCACAGAAA 61.391 50.000 32.95 14.05 34.17 2.52
6234 13857 1.799258 AAGCTTGCCGGCACAGAAAG 61.799 55.000 32.95 24.69 34.17 2.62
6235 13858 2.260869 GCTTGCCGGCACAGAAAGA 61.261 57.895 32.95 12.28 0.00 2.52
6236 13859 1.589716 GCTTGCCGGCACAGAAAGAT 61.590 55.000 32.95 0.00 0.00 2.40
6237 13860 0.449388 CTTGCCGGCACAGAAAGATC 59.551 55.000 32.95 0.00 0.00 2.75
6238 13861 1.298157 TTGCCGGCACAGAAAGATCG 61.298 55.000 32.95 0.00 0.00 3.69
6239 13862 1.741770 GCCGGCACAGAAAGATCGT 60.742 57.895 24.80 0.00 0.00 3.73
6240 13863 1.696832 GCCGGCACAGAAAGATCGTC 61.697 60.000 24.80 0.00 0.00 4.20
6241 13864 1.084370 CCGGCACAGAAAGATCGTCC 61.084 60.000 0.00 0.00 0.00 4.79
6242 13865 1.413767 CGGCACAGAAAGATCGTCCG 61.414 60.000 0.00 0.00 0.00 4.79
6243 13866 1.084370 GGCACAGAAAGATCGTCCGG 61.084 60.000 0.00 0.00 0.00 5.14
6244 13867 0.389948 GCACAGAAAGATCGTCCGGT 60.390 55.000 0.00 0.00 0.00 5.28
6245 13868 1.350193 CACAGAAAGATCGTCCGGTG 58.650 55.000 0.00 0.00 0.00 4.94
6246 13869 0.966920 ACAGAAAGATCGTCCGGTGT 59.033 50.000 0.00 0.00 0.00 4.16
6247 13870 1.336887 ACAGAAAGATCGTCCGGTGTG 60.337 52.381 0.00 0.00 0.00 3.82
6248 13871 0.246635 AGAAAGATCGTCCGGTGTGG 59.753 55.000 0.00 0.00 40.09 4.17
6256 13879 2.281484 TCCGGTGTGGAAGCTTGC 60.281 61.111 11.58 11.58 46.38 4.01
6257 13880 3.365265 CCGGTGTGGAAGCTTGCC 61.365 66.667 15.98 11.27 42.00 4.52
6258 13881 3.726517 CGGTGTGGAAGCTTGCCG 61.727 66.667 15.98 7.70 0.00 5.69
6259 13882 3.365265 GGTGTGGAAGCTTGCCGG 61.365 66.667 15.98 0.00 0.00 6.13
6260 13883 2.594592 GTGTGGAAGCTTGCCGGT 60.595 61.111 15.98 0.00 0.00 5.28
6261 13884 2.594303 TGTGGAAGCTTGCCGGTG 60.594 61.111 15.98 0.00 0.00 4.94
6262 13885 2.594592 GTGGAAGCTTGCCGGTGT 60.595 61.111 15.98 0.00 0.00 4.16
6263 13886 2.594303 TGGAAGCTTGCCGGTGTG 60.594 61.111 15.98 0.00 0.00 3.82
6264 13887 2.281484 GGAAGCTTGCCGGTGTGA 60.281 61.111 2.10 0.00 0.00 3.58
6265 13888 1.896660 GGAAGCTTGCCGGTGTGAA 60.897 57.895 2.10 0.00 0.00 3.18
6266 13889 1.452145 GGAAGCTTGCCGGTGTGAAA 61.452 55.000 2.10 0.00 0.00 2.69
6267 13890 0.598065 GAAGCTTGCCGGTGTGAAAT 59.402 50.000 2.10 0.00 0.00 2.17
6268 13891 0.598065 AAGCTTGCCGGTGTGAAATC 59.402 50.000 1.90 0.00 0.00 2.17
6269 13892 0.250901 AGCTTGCCGGTGTGAAATCT 60.251 50.000 1.90 0.00 0.00 2.40
6270 13893 0.598065 GCTTGCCGGTGTGAAATCTT 59.402 50.000 1.90 0.00 0.00 2.40
6271 13894 1.666888 GCTTGCCGGTGTGAAATCTTG 60.667 52.381 1.90 0.00 0.00 3.02
6272 13895 0.313672 TTGCCGGTGTGAAATCTTGC 59.686 50.000 1.90 0.00 0.00 4.01
6273 13896 1.212751 GCCGGTGTGAAATCTTGCC 59.787 57.895 1.90 0.00 0.00 4.52
6274 13897 1.501741 CCGGTGTGAAATCTTGCCG 59.498 57.895 0.00 0.00 38.99 5.69
6275 13898 1.501741 CGGTGTGAAATCTTGCCGG 59.498 57.895 0.00 0.00 36.05 6.13
6276 13899 1.883021 GGTGTGAAATCTTGCCGGG 59.117 57.895 2.18 0.00 0.00 5.73
6277 13900 1.595093 GGTGTGAAATCTTGCCGGGG 61.595 60.000 2.18 0.00 0.00 5.73
6278 13901 1.304052 TGTGAAATCTTGCCGGGGG 60.304 57.895 2.18 0.00 0.00 5.40
6279 13902 1.001393 GTGAAATCTTGCCGGGGGA 60.001 57.895 2.18 0.00 0.00 4.81
6280 13903 1.032114 GTGAAATCTTGCCGGGGGAG 61.032 60.000 2.18 0.00 0.00 4.30
6281 13904 1.204786 TGAAATCTTGCCGGGGGAGA 61.205 55.000 2.18 0.00 0.00 3.71
6282 13905 0.034477 GAAATCTTGCCGGGGGAGAA 60.034 55.000 2.18 0.00 0.00 2.87
6283 13906 0.407918 AAATCTTGCCGGGGGAGAAA 59.592 50.000 2.18 0.00 0.00 2.52
6284 13907 0.323451 AATCTTGCCGGGGGAGAAAC 60.323 55.000 2.18 0.00 0.00 2.78
6285 13908 2.211468 ATCTTGCCGGGGGAGAAACC 62.211 60.000 2.18 0.00 38.08 3.27
6286 13909 2.856988 TTGCCGGGGGAGAAACCT 60.857 61.111 2.18 0.00 38.98 3.50
6287 13910 2.426305 CTTGCCGGGGGAGAAACCTT 62.426 60.000 2.18 0.00 38.98 3.50
6288 13911 2.361230 GCCGGGGGAGAAACCTTG 60.361 66.667 2.18 0.00 38.98 3.61
6289 13912 3.167414 CCGGGGGAGAAACCTTGT 58.833 61.111 0.00 0.00 38.98 3.16
6290 13913 1.002502 CCGGGGGAGAAACCTTGTC 60.003 63.158 0.00 0.00 38.98 3.18
6291 13914 1.758592 CGGGGGAGAAACCTTGTCA 59.241 57.895 0.00 0.00 38.98 3.58
6292 13915 0.321653 CGGGGGAGAAACCTTGTCAG 60.322 60.000 0.00 0.00 38.98 3.51
6294 13917 0.038310 GGGGAGAAACCTTGTCAGGG 59.962 60.000 0.00 0.00 46.01 4.45
6295 13918 1.064825 GGGAGAAACCTTGTCAGGGA 58.935 55.000 8.21 0.00 46.01 4.20
6296 13919 1.003696 GGGAGAAACCTTGTCAGGGAG 59.996 57.143 8.21 0.00 46.01 4.30
6297 13920 1.003696 GGAGAAACCTTGTCAGGGAGG 59.996 57.143 8.21 0.00 46.01 4.30
6298 13921 1.978580 GAGAAACCTTGTCAGGGAGGA 59.021 52.381 8.21 0.00 46.01 3.71
6299 13922 2.372172 GAGAAACCTTGTCAGGGAGGAA 59.628 50.000 8.21 0.00 46.01 3.36
6300 13923 2.106684 AGAAACCTTGTCAGGGAGGAAC 59.893 50.000 8.21 0.00 46.01 3.62
6301 13924 0.771755 AACCTTGTCAGGGAGGAACC 59.228 55.000 8.21 0.00 46.01 3.62
6310 13933 3.327404 GGAGGAACCCTTGCCGGA 61.327 66.667 5.05 0.00 31.76 5.14
6311 13934 2.269241 GAGGAACCCTTGCCGGAG 59.731 66.667 5.05 0.00 31.76 4.63
6312 13935 2.529389 AGGAACCCTTGCCGGAGT 60.529 61.111 5.05 0.00 33.16 3.85
6313 13936 1.229400 AGGAACCCTTGCCGGAGTA 60.229 57.895 5.05 0.00 33.16 2.59
6314 13937 1.078637 GGAACCCTTGCCGGAGTAC 60.079 63.158 5.05 0.00 33.16 2.73
6315 13938 1.675219 GAACCCTTGCCGGAGTACA 59.325 57.895 5.05 0.00 33.16 2.90
6316 13939 0.035739 GAACCCTTGCCGGAGTACAA 59.964 55.000 5.05 0.00 33.16 2.41
6317 13940 0.475044 AACCCTTGCCGGAGTACAAA 59.525 50.000 5.05 0.00 33.16 2.83
6318 13941 0.250597 ACCCTTGCCGGAGTACAAAC 60.251 55.000 5.05 0.00 33.16 2.93
6319 13942 0.958876 CCCTTGCCGGAGTACAAACC 60.959 60.000 5.05 0.00 33.16 3.27
6320 13943 0.036306 CCTTGCCGGAGTACAAACCT 59.964 55.000 5.05 0.00 33.16 3.50
6321 13944 1.544759 CCTTGCCGGAGTACAAACCTT 60.545 52.381 5.05 0.00 33.16 3.50
6322 13945 1.535462 CTTGCCGGAGTACAAACCTTG 59.465 52.381 5.05 0.00 0.00 3.61
6323 13946 0.887387 TGCCGGAGTACAAACCTTGC 60.887 55.000 5.05 2.56 0.00 4.01
6324 13947 1.583495 GCCGGAGTACAAACCTTGCC 61.583 60.000 5.05 0.00 0.00 4.52
6325 13948 1.296056 CCGGAGTACAAACCTTGCCG 61.296 60.000 0.00 0.00 37.20 5.69
6326 13949 1.296056 CGGAGTACAAACCTTGCCGG 61.296 60.000 0.00 0.00 39.35 6.13
6327 13950 0.035739 GGAGTACAAACCTTGCCGGA 59.964 55.000 5.05 0.00 36.31 5.14
6328 13951 1.439679 GAGTACAAACCTTGCCGGAG 58.560 55.000 5.05 0.00 36.31 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 190 9.899226 AAATCATCCGTTCTAAGAAAAGAAAAG 57.101 29.630 0.00 0.00 37.24 2.27
458 527 7.938563 AACTAAATCTGATAGCAAGATCGTC 57.061 36.000 0.00 0.00 0.00 4.20
665 737 9.914131 CTAGCAAAGGTAATAAAAGCTTTCTTT 57.086 29.630 13.10 12.98 43.40 2.52
701 773 5.787953 TGTTTTGAGAAGAAATCATGGCA 57.212 34.783 0.00 0.00 0.00 4.92
957 1029 6.199393 AGATTCAGCAAAAGTTTACACGAAC 58.801 36.000 0.00 0.00 0.00 3.95
990 1062 1.448985 GGAACTCTGCCAAATACGCA 58.551 50.000 0.00 0.00 34.41 5.24
992 1064 1.006832 CCGGAACTCTGCCAAATACG 58.993 55.000 0.00 0.00 0.00 3.06
993 1065 1.379527 CCCGGAACTCTGCCAAATAC 58.620 55.000 0.73 0.00 0.00 1.89
994 1066 0.393808 GCCCGGAACTCTGCCAAATA 60.394 55.000 0.73 0.00 0.00 1.40
995 1067 1.678970 GCCCGGAACTCTGCCAAAT 60.679 57.895 0.73 0.00 0.00 2.32
1076 1161 2.184579 GTCACCTGCCGGCTAGTC 59.815 66.667 29.70 9.96 0.00 2.59
1157 1242 3.356639 GACGATGAGCGCCACCTCA 62.357 63.158 2.29 0.40 45.16 3.86
1228 1313 1.036707 CTAGGCTGGAGCTGTAGACC 58.963 60.000 0.00 0.00 41.70 3.85
1243 1342 4.342378 TCACCAAGCTTAGCTACATCTAGG 59.658 45.833 7.32 4.02 38.25 3.02
1402 1501 5.368989 ACCAGCAGCCTTGTATTATACTTC 58.631 41.667 3.92 0.00 0.00 3.01
1432 1534 5.010719 AGACCTGAACGATCTGAAAACTACA 59.989 40.000 1.01 0.00 0.00 2.74
1701 1809 2.579873 CATGGGTGAGCTTAGATTGGG 58.420 52.381 0.00 0.00 0.00 4.12
1703 1811 3.209410 GTCCATGGGTGAGCTTAGATTG 58.791 50.000 13.02 0.00 0.00 2.67
1783 1892 0.531974 AGTTTCACGCGTCCACACAT 60.532 50.000 9.86 0.00 0.00 3.21
1845 2083 5.770162 CACCACAAAAAGAGGAAGGAACTAT 59.230 40.000 0.00 0.00 38.49 2.12
1846 2084 5.130350 CACCACAAAAAGAGGAAGGAACTA 58.870 41.667 0.00 0.00 38.49 2.24
1892 2130 9.256477 TGACTATATTCAATTACAAACTAGGCG 57.744 33.333 0.00 0.00 0.00 5.52
2014 2255 4.619760 CGTATGAAACACACACGTCAGTAT 59.380 41.667 0.00 0.00 43.27 2.12
2060 2301 1.757118 ACTACGCATGCATACACTCCT 59.243 47.619 19.57 0.00 0.00 3.69
2203 2445 3.120616 CACGTACGACACAAATACAGTGG 59.879 47.826 24.41 0.00 41.21 4.00
2225 2467 5.269313 GCTATACAAGAAAATGTCTGCTGC 58.731 41.667 0.00 0.00 36.40 5.25
2226 2468 5.291858 TCGCTATACAAGAAAATGTCTGCTG 59.708 40.000 0.00 0.00 36.40 4.41
2227 2469 5.419542 TCGCTATACAAGAAAATGTCTGCT 58.580 37.500 0.00 0.00 36.40 4.24
2390 2632 7.977853 AGTAAGATCAAATCATGGTTGCATTTC 59.022 33.333 0.00 0.00 0.00 2.17
2507 2749 5.532779 TGTCACTTGGTTAACATGCATACAA 59.467 36.000 8.10 0.00 0.00 2.41
2653 2933 6.475504 TGACAGACATTGGTAAATCTCACAT 58.524 36.000 0.00 0.00 0.00 3.21
2747 3359 3.171277 GTGTGTCTTTTGTGTCAAGTGC 58.829 45.455 0.00 0.00 0.00 4.40
3000 3630 6.980978 TGAGATAACACAATGACTAGCTTAGC 59.019 38.462 0.00 0.00 0.00 3.09
3001 3631 8.194104 ACTGAGATAACACAATGACTAGCTTAG 58.806 37.037 0.00 0.00 0.00 2.18
3002 3632 8.067751 ACTGAGATAACACAATGACTAGCTTA 57.932 34.615 0.00 0.00 0.00 3.09
3003 3633 6.940739 ACTGAGATAACACAATGACTAGCTT 58.059 36.000 0.00 0.00 0.00 3.74
3004 3634 6.537453 ACTGAGATAACACAATGACTAGCT 57.463 37.500 0.00 0.00 0.00 3.32
3027 3657 3.119637 TGCATGTCAATCGACGAGACTAA 60.120 43.478 15.62 0.72 45.80 2.24
3035 3672 1.130938 TGTGCATGCATGTCAATCGAC 59.869 47.619 25.64 7.17 42.93 4.20
3151 3788 5.050490 AGGCATACATTGAACAGTATCGAC 58.950 41.667 0.00 0.00 0.00 4.20
3173 3810 4.525024 AGAAGGGAATGAAATGCAGAGAG 58.475 43.478 0.00 0.00 0.00 3.20
3230 3990 5.291971 AGCATAAAGTTTGGCAAAAGAGTG 58.708 37.500 15.29 10.96 0.00 3.51
3232 3992 7.653311 ACTTAAGCATAAAGTTTGGCAAAAGAG 59.347 33.333 15.29 3.29 33.39 2.85
3264 4024 5.476945 ACACGAAGCCCTCAATATTTTCTTT 59.523 36.000 0.00 0.00 0.00 2.52
3271 4031 4.589908 AGAAAACACGAAGCCCTCAATAT 58.410 39.130 0.00 0.00 0.00 1.28
3284 4044 6.628856 CACAAGACATACAGAAAGAAAACACG 59.371 38.462 0.00 0.00 0.00 4.49
3294 4054 7.598869 GTGATAGTGTTCACAAGACATACAGAA 59.401 37.037 5.74 0.00 44.38 3.02
3352 4112 1.072806 AGACAGGCAAGCACTCATCAA 59.927 47.619 0.00 0.00 0.00 2.57
3361 4121 1.220477 GGAGGAGAGACAGGCAAGC 59.780 63.158 0.00 0.00 0.00 4.01
3490 4250 6.825213 TGCATATGGATATGGTTCTAATGAGC 59.175 38.462 4.56 0.00 40.31 4.26
3633 4393 2.715046 TCTTTGATCCATGTGTGGCTC 58.285 47.619 0.00 0.00 45.63 4.70
3680 6854 3.683365 ATGGATTTGCTTTGGTGGTTC 57.317 42.857 0.00 0.00 0.00 3.62
3748 6922 6.429385 TGCACACACAGAAACATAATCATGTA 59.571 34.615 0.00 0.00 44.83 2.29
3750 6924 5.701855 TGCACACACAGAAACATAATCATG 58.298 37.500 0.00 0.00 38.21 3.07
3982 7166 5.291128 CGCTAATTAATATCCACGTCATCCC 59.709 44.000 0.00 0.00 0.00 3.85
4004 7188 2.537625 GTGAGCTGTCTATCACATTCGC 59.462 50.000 0.00 0.00 44.21 4.70
4055 7239 5.500234 TGCTGGTAGTATTGCTTCAGAAAT 58.500 37.500 8.28 0.00 32.64 2.17
4317 7501 2.778299 TCGGTGGGAAGTTGATCAAAG 58.222 47.619 10.35 0.00 0.00 2.77
4762 8008 6.483640 GGAACCATCGAAGTTGATTTATAGCT 59.516 38.462 8.75 0.00 0.00 3.32
4861 8120 0.531532 GCGATAGTCACCTGCTGCAT 60.532 55.000 1.31 0.00 39.35 3.96
5007 8266 3.306595 CTGAAGCGAGGCCTGAGCA 62.307 63.158 26.08 10.44 42.56 4.26
5008 8267 2.511145 CTGAAGCGAGGCCTGAGC 60.511 66.667 12.00 16.75 38.76 4.26
5009 8268 2.511145 GCTGAAGCGAGGCCTGAG 60.511 66.667 12.00 4.92 0.00 3.35
5090 8349 0.892814 GCAAGAGCTCCTGCAGGTTT 60.893 55.000 31.58 18.15 42.74 3.27
5143 8402 2.165845 AGTACTGATAACACTGCCGACC 59.834 50.000 0.00 0.00 0.00 4.79
5221 8480 3.181500 GCGGCAAATTTAGAGGTACTTGG 60.181 47.826 0.00 0.00 41.55 3.61
5275 8534 6.417044 GTGTAGCAATTCGTCAGAATATACGT 59.583 38.462 0.00 0.00 45.66 3.57
5353 8613 3.973206 TGCTTCGACCTCCTTTTCATA 57.027 42.857 0.00 0.00 0.00 2.15
5418 8678 7.546778 TGATGCGTGTATTTGCTTTATAAGA 57.453 32.000 0.00 0.00 0.00 2.10
5421 8681 7.065204 TGAGTTGATGCGTGTATTTGCTTTATA 59.935 33.333 0.00 0.00 0.00 0.98
5438 8698 2.165030 GGAAGGTGGCATTGAGTTGATG 59.835 50.000 0.00 0.00 0.00 3.07
5452 8721 0.173708 GACAGGTAGCGAGGAAGGTG 59.826 60.000 0.00 0.00 0.00 4.00
5464 8733 0.540133 TGTGGGTGTAGCGACAGGTA 60.540 55.000 0.00 0.00 35.82 3.08
5523 8794 4.297768 TGGTGAGACCATTGGATCAGATA 58.702 43.478 10.37 0.63 44.79 1.98
5670 13284 8.294577 GCAGCATCATATTCTCATGAACATTAA 58.705 33.333 0.00 0.00 38.39 1.40
5716 13330 5.703130 GCTAGGCCCTTCATTAGTAATCAAG 59.297 44.000 0.00 0.00 0.00 3.02
5764 13381 5.319453 TCATCTCCATGCTTGTTTCTTCTT 58.681 37.500 0.00 0.00 0.00 2.52
5807 13424 2.657372 CTGCACTAGAAACGTCGTTCTC 59.343 50.000 11.71 10.91 38.75 2.87
5885 13504 7.715657 TGGACTTTATTTATGACAATGCATCC 58.284 34.615 0.00 0.00 0.00 3.51
5904 13523 7.680730 CCACACCTATTATAAGCTATGGACTT 58.319 38.462 0.00 0.00 0.00 3.01
5905 13524 6.295916 GCCACACCTATTATAAGCTATGGACT 60.296 42.308 0.00 0.00 0.00 3.85
5993 13612 4.263374 TGTTTCCCCACACATACGGATTAA 60.263 41.667 0.00 0.00 0.00 1.40
5994 13613 3.263681 TGTTTCCCCACACATACGGATTA 59.736 43.478 0.00 0.00 0.00 1.75
6061 13683 0.999712 TGGAGGAAGATGGGGGAAAC 59.000 55.000 0.00 0.00 0.00 2.78
6062 13684 2.000290 ATGGAGGAAGATGGGGGAAA 58.000 50.000 0.00 0.00 0.00 3.13
6070 13693 9.273137 CTAAGGGTTGTATATATGGAGGAAGAT 57.727 37.037 0.00 0.00 0.00 2.40
6103 13726 0.380378 GTGCCACTTTTGAGCGTCAA 59.620 50.000 0.00 0.00 34.03 3.18
6105 13728 1.082756 CGTGCCACTTTTGAGCGTC 60.083 57.895 0.00 0.00 0.00 5.19
6106 13729 0.884704 ATCGTGCCACTTTTGAGCGT 60.885 50.000 0.00 0.00 0.00 5.07
6107 13730 0.179215 GATCGTGCCACTTTTGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
6108 13731 0.874390 TGATCGTGCCACTTTTGAGC 59.126 50.000 0.00 0.00 0.00 4.26
6109 13732 4.944962 TTATGATCGTGCCACTTTTGAG 57.055 40.909 0.00 0.00 0.00 3.02
6110 13733 4.379394 GCTTTATGATCGTGCCACTTTTGA 60.379 41.667 0.00 0.00 0.00 2.69
6111 13734 3.853671 GCTTTATGATCGTGCCACTTTTG 59.146 43.478 0.00 0.00 0.00 2.44
6112 13735 3.505680 TGCTTTATGATCGTGCCACTTTT 59.494 39.130 0.00 0.00 0.00 2.27
6113 13736 3.081061 TGCTTTATGATCGTGCCACTTT 58.919 40.909 0.00 0.00 0.00 2.66
6114 13737 2.679837 CTGCTTTATGATCGTGCCACTT 59.320 45.455 0.00 0.00 0.00 3.16
6115 13738 2.283298 CTGCTTTATGATCGTGCCACT 58.717 47.619 0.00 0.00 0.00 4.00
6116 13739 1.268234 GCTGCTTTATGATCGTGCCAC 60.268 52.381 0.00 0.00 0.00 5.01
6117 13740 1.016627 GCTGCTTTATGATCGTGCCA 58.983 50.000 0.00 0.00 0.00 4.92
6118 13741 1.016627 TGCTGCTTTATGATCGTGCC 58.983 50.000 0.00 0.00 0.00 5.01
6119 13742 2.647337 CATGCTGCTTTATGATCGTGC 58.353 47.619 0.00 0.00 0.00 5.34
6120 13743 2.603892 GGCATGCTGCTTTATGATCGTG 60.604 50.000 18.92 0.00 44.28 4.35
6121 13744 1.605710 GGCATGCTGCTTTATGATCGT 59.394 47.619 18.92 0.00 44.28 3.73
6122 13745 1.399343 CGGCATGCTGCTTTATGATCG 60.399 52.381 18.92 3.82 44.28 3.69
6123 13746 1.068748 CCGGCATGCTGCTTTATGATC 60.069 52.381 21.64 0.00 44.28 2.92
6124 13747 0.956633 CCGGCATGCTGCTTTATGAT 59.043 50.000 21.64 0.00 44.28 2.45
6125 13748 1.102809 CCCGGCATGCTGCTTTATGA 61.103 55.000 21.64 0.00 44.28 2.15
6126 13749 1.361271 CCCGGCATGCTGCTTTATG 59.639 57.895 21.64 6.11 44.28 1.90
6127 13750 1.829533 CCCCGGCATGCTGCTTTAT 60.830 57.895 21.64 0.00 44.28 1.40
6128 13751 2.440065 CCCCGGCATGCTGCTTTA 60.440 61.111 21.64 0.00 44.28 1.85
6139 13762 2.030412 CAAGGTTTTTGCCCCGGC 59.970 61.111 0.00 0.00 42.35 6.13
6140 13763 2.030412 GCAAGGTTTTTGCCCCGG 59.970 61.111 0.00 0.00 39.38 5.73
6141 13764 1.300853 CAGCAAGGTTTTTGCCCCG 60.301 57.895 8.15 0.00 45.98 5.73
6142 13765 1.071299 CCAGCAAGGTTTTTGCCCC 59.929 57.895 8.15 0.00 45.98 5.80
6143 13766 1.071299 CCCAGCAAGGTTTTTGCCC 59.929 57.895 8.15 0.00 45.98 5.36
6144 13767 1.071299 CCCCAGCAAGGTTTTTGCC 59.929 57.895 8.15 0.00 45.98 4.52
6145 13768 1.044611 TACCCCAGCAAGGTTTTTGC 58.955 50.000 3.80 3.80 45.22 3.68
6146 13769 3.828875 TTTACCCCAGCAAGGTTTTTG 57.171 42.857 0.00 0.00 38.89 2.44
6147 13770 4.658435 AGATTTTACCCCAGCAAGGTTTTT 59.342 37.500 0.00 0.00 38.89 1.94
6148 13771 4.231273 AGATTTTACCCCAGCAAGGTTTT 58.769 39.130 0.00 0.00 38.89 2.43
6149 13772 3.856900 AGATTTTACCCCAGCAAGGTTT 58.143 40.909 0.00 0.00 38.89 3.27
6150 13773 3.542969 AGATTTTACCCCAGCAAGGTT 57.457 42.857 0.00 0.00 38.89 3.50
6151 13774 3.165071 CAAGATTTTACCCCAGCAAGGT 58.835 45.455 0.00 0.00 41.64 3.50
6152 13775 2.094026 GCAAGATTTTACCCCAGCAAGG 60.094 50.000 0.00 0.00 37.03 3.61
6153 13776 2.094026 GGCAAGATTTTACCCCAGCAAG 60.094 50.000 0.00 0.00 0.00 4.01
6154 13777 1.899142 GGCAAGATTTTACCCCAGCAA 59.101 47.619 0.00 0.00 0.00 3.91
6155 13778 1.555967 GGCAAGATTTTACCCCAGCA 58.444 50.000 0.00 0.00 0.00 4.41
6156 13779 0.455815 CGGCAAGATTTTACCCCAGC 59.544 55.000 0.00 0.00 0.00 4.85
6157 13780 1.102978 CCGGCAAGATTTTACCCCAG 58.897 55.000 0.00 0.00 0.00 4.45
6158 13781 0.406361 ACCGGCAAGATTTTACCCCA 59.594 50.000 0.00 0.00 0.00 4.96
6159 13782 0.815095 CACCGGCAAGATTTTACCCC 59.185 55.000 0.00 0.00 0.00 4.95
6160 13783 1.201414 CACACCGGCAAGATTTTACCC 59.799 52.381 0.00 0.00 0.00 3.69
6161 13784 2.156098 TCACACCGGCAAGATTTTACC 58.844 47.619 0.00 0.00 0.00 2.85
6162 13785 3.907894 TTCACACCGGCAAGATTTTAC 57.092 42.857 0.00 0.00 0.00 2.01
6163 13786 3.305064 GCTTTCACACCGGCAAGATTTTA 60.305 43.478 0.00 0.00 0.00 1.52
6164 13787 2.545742 GCTTTCACACCGGCAAGATTTT 60.546 45.455 0.00 0.00 0.00 1.82
6165 13788 1.000274 GCTTTCACACCGGCAAGATTT 60.000 47.619 0.00 0.00 0.00 2.17
6166 13789 0.598065 GCTTTCACACCGGCAAGATT 59.402 50.000 0.00 0.00 0.00 2.40
6167 13790 0.250901 AGCTTTCACACCGGCAAGAT 60.251 50.000 0.00 0.00 0.00 2.40
6168 13791 0.465460 AAGCTTTCACACCGGCAAGA 60.465 50.000 0.00 0.00 0.00 3.02
6169 13792 0.318107 CAAGCTTTCACACCGGCAAG 60.318 55.000 0.00 0.00 0.00 4.01
6170 13793 1.732917 CAAGCTTTCACACCGGCAA 59.267 52.632 0.00 0.00 0.00 4.52
6171 13794 2.844451 GCAAGCTTTCACACCGGCA 61.844 57.895 0.00 0.00 0.00 5.69
6172 13795 2.050077 GCAAGCTTTCACACCGGC 60.050 61.111 0.00 0.00 0.00 6.13
6173 13796 2.644992 GGCAAGCTTTCACACCGG 59.355 61.111 0.00 0.00 0.00 5.28
6174 13797 2.252260 CGGCAAGCTTTCACACCG 59.748 61.111 0.00 1.51 0.00 4.94
6175 13798 2.193536 ACCGGCAAGCTTTCACACC 61.194 57.895 0.00 0.00 0.00 4.16
6176 13799 1.008538 CACCGGCAAGCTTTCACAC 60.009 57.895 0.00 0.00 0.00 3.82
6177 13800 0.179043 TACACCGGCAAGCTTTCACA 60.179 50.000 0.00 0.00 0.00 3.58
6178 13801 0.948678 TTACACCGGCAAGCTTTCAC 59.051 50.000 0.00 0.00 0.00 3.18
6179 13802 1.606668 CTTTACACCGGCAAGCTTTCA 59.393 47.619 0.00 0.00 0.00 2.69
6180 13803 1.068541 CCTTTACACCGGCAAGCTTTC 60.069 52.381 0.00 0.00 0.00 2.62
6181 13804 0.958822 CCTTTACACCGGCAAGCTTT 59.041 50.000 0.00 0.00 0.00 3.51
6182 13805 1.524008 GCCTTTACACCGGCAAGCTT 61.524 55.000 0.00 0.00 45.59 3.74
6183 13806 1.971695 GCCTTTACACCGGCAAGCT 60.972 57.895 0.00 0.00 45.59 3.74
6184 13807 2.566529 GCCTTTACACCGGCAAGC 59.433 61.111 0.00 0.00 45.59 4.01
6188 13811 2.566529 GCAAGCCTTTACACCGGC 59.433 61.111 0.00 0.00 46.65 6.13
6189 13812 2.686816 CGGCAAGCCTTTACACCGG 61.687 63.158 9.73 0.00 37.04 5.28
6190 13813 2.686816 CCGGCAAGCCTTTACACCG 61.687 63.158 9.73 0.00 40.30 4.94
6191 13814 2.989881 GCCGGCAAGCCTTTACACC 61.990 63.158 24.80 0.00 0.00 4.16
6192 13815 2.566529 GCCGGCAAGCCTTTACAC 59.433 61.111 24.80 0.00 0.00 2.90
6193 13816 3.053291 CGCCGGCAAGCCTTTACA 61.053 61.111 28.98 0.00 0.00 2.41
6194 13817 3.053896 ACGCCGGCAAGCCTTTAC 61.054 61.111 28.98 0.00 0.00 2.01
6195 13818 3.053291 CACGCCGGCAAGCCTTTA 61.053 61.111 28.98 0.00 0.00 1.85
6200 13823 4.404654 CTTTCCACGCCGGCAAGC 62.405 66.667 28.98 0.00 30.90 4.01
6201 13824 4.404654 GCTTTCCACGCCGGCAAG 62.405 66.667 28.98 22.10 40.69 4.01
6202 13825 4.947147 AGCTTTCCACGCCGGCAA 62.947 61.111 28.98 10.47 33.14 4.52
6203 13826 4.947147 AAGCTTTCCACGCCGGCA 62.947 61.111 28.98 2.89 33.14 5.69
6204 13827 4.404654 CAAGCTTTCCACGCCGGC 62.405 66.667 19.07 19.07 33.14 6.13
6205 13828 4.404654 GCAAGCTTTCCACGCCGG 62.405 66.667 0.00 0.00 0.00 6.13
6206 13829 4.404654 GGCAAGCTTTCCACGCCG 62.405 66.667 10.54 0.00 32.14 6.46
6207 13830 4.404654 CGGCAAGCTTTCCACGCC 62.405 66.667 15.68 14.47 39.45 5.68
6208 13831 4.404654 CCGGCAAGCTTTCCACGC 62.405 66.667 15.68 6.56 0.00 5.34
6209 13832 4.404654 GCCGGCAAGCTTTCCACG 62.405 66.667 24.80 8.62 0.00 4.94
6210 13833 3.294493 TGCCGGCAAGCTTTCCAC 61.294 61.111 30.74 7.04 0.00 4.02
6211 13834 3.294493 GTGCCGGCAAGCTTTCCA 61.294 61.111 34.66 0.58 0.00 3.53
6212 13835 3.273080 CTGTGCCGGCAAGCTTTCC 62.273 63.158 34.66 17.90 0.00 3.13
6213 13836 1.795170 TTCTGTGCCGGCAAGCTTTC 61.795 55.000 34.66 18.73 0.00 2.62
6214 13837 1.391157 TTTCTGTGCCGGCAAGCTTT 61.391 50.000 34.66 0.00 0.00 3.51
6215 13838 1.799258 CTTTCTGTGCCGGCAAGCTT 61.799 55.000 34.66 0.00 0.00 3.74
6216 13839 2.203337 TTTCTGTGCCGGCAAGCT 60.203 55.556 34.66 0.00 0.00 3.74
6217 13840 1.589716 ATCTTTCTGTGCCGGCAAGC 61.590 55.000 34.66 21.26 0.00 4.01
6218 13841 0.449388 GATCTTTCTGTGCCGGCAAG 59.551 55.000 34.66 28.08 0.00 4.01
6219 13842 1.298157 CGATCTTTCTGTGCCGGCAA 61.298 55.000 34.66 20.28 0.00 4.52
6220 13843 1.741401 CGATCTTTCTGTGCCGGCA 60.741 57.895 29.03 29.03 0.00 5.69
6221 13844 1.696832 GACGATCTTTCTGTGCCGGC 61.697 60.000 22.73 22.73 0.00 6.13
6222 13845 1.084370 GGACGATCTTTCTGTGCCGG 61.084 60.000 0.00 0.00 0.00 6.13
6223 13846 1.413767 CGGACGATCTTTCTGTGCCG 61.414 60.000 0.00 0.00 0.00 5.69
6224 13847 1.084370 CCGGACGATCTTTCTGTGCC 61.084 60.000 0.00 0.00 0.00 5.01
6225 13848 0.389948 ACCGGACGATCTTTCTGTGC 60.390 55.000 9.46 0.00 0.00 4.57
6226 13849 1.336887 ACACCGGACGATCTTTCTGTG 60.337 52.381 9.46 1.12 0.00 3.66
6227 13850 0.966920 ACACCGGACGATCTTTCTGT 59.033 50.000 9.46 0.00 0.00 3.41
6228 13851 1.350193 CACACCGGACGATCTTTCTG 58.650 55.000 9.46 0.00 0.00 3.02
6229 13852 0.246635 CCACACCGGACGATCTTTCT 59.753 55.000 9.46 0.00 36.56 2.52
6230 13853 0.245539 TCCACACCGGACGATCTTTC 59.754 55.000 9.46 0.00 39.64 2.62
6231 13854 0.682852 TTCCACACCGGACGATCTTT 59.317 50.000 9.46 0.00 46.36 2.52
6232 13855 0.246635 CTTCCACACCGGACGATCTT 59.753 55.000 9.46 0.00 46.36 2.40
6233 13856 1.890894 CTTCCACACCGGACGATCT 59.109 57.895 9.46 0.00 46.36 2.75
6234 13857 1.810030 GCTTCCACACCGGACGATC 60.810 63.158 9.46 0.00 46.36 3.69
6235 13858 1.827399 AAGCTTCCACACCGGACGAT 61.827 55.000 9.46 0.00 46.36 3.73
6236 13859 2.504274 AAGCTTCCACACCGGACGA 61.504 57.895 9.46 0.00 46.36 4.20
6237 13860 2.030562 AAGCTTCCACACCGGACG 59.969 61.111 9.46 0.00 46.36 4.79
6238 13861 2.617274 GCAAGCTTCCACACCGGAC 61.617 63.158 9.46 0.00 46.36 4.79
6239 13862 2.281484 GCAAGCTTCCACACCGGA 60.281 61.111 9.46 0.00 44.40 5.14
6240 13863 3.365265 GGCAAGCTTCCACACCGG 61.365 66.667 0.00 0.00 0.00 5.28
6241 13864 3.726517 CGGCAAGCTTCCACACCG 61.727 66.667 0.00 1.26 0.00 4.94
6242 13865 3.365265 CCGGCAAGCTTCCACACC 61.365 66.667 0.00 0.00 0.00 4.16
6243 13866 2.594592 ACCGGCAAGCTTCCACAC 60.595 61.111 0.00 0.00 0.00 3.82
6244 13867 2.594303 CACCGGCAAGCTTCCACA 60.594 61.111 0.00 0.00 0.00 4.17
6245 13868 2.594592 ACACCGGCAAGCTTCCAC 60.595 61.111 0.00 0.00 0.00 4.02
6246 13869 2.594303 CACACCGGCAAGCTTCCA 60.594 61.111 0.00 0.00 0.00 3.53
6247 13870 1.452145 TTTCACACCGGCAAGCTTCC 61.452 55.000 0.00 0.00 0.00 3.46
6248 13871 0.598065 ATTTCACACCGGCAAGCTTC 59.402 50.000 0.00 0.00 0.00 3.86
6249 13872 0.598065 GATTTCACACCGGCAAGCTT 59.402 50.000 0.00 0.00 0.00 3.74
6250 13873 0.250901 AGATTTCACACCGGCAAGCT 60.251 50.000 0.00 0.00 0.00 3.74
6251 13874 0.598065 AAGATTTCACACCGGCAAGC 59.402 50.000 0.00 0.00 0.00 4.01
6252 13875 1.666888 GCAAGATTTCACACCGGCAAG 60.667 52.381 0.00 0.00 0.00 4.01
6253 13876 0.313672 GCAAGATTTCACACCGGCAA 59.686 50.000 0.00 0.00 0.00 4.52
6254 13877 1.523154 GGCAAGATTTCACACCGGCA 61.523 55.000 0.00 0.00 0.00 5.69
6255 13878 1.212751 GGCAAGATTTCACACCGGC 59.787 57.895 0.00 0.00 0.00 6.13
6256 13879 1.501741 CGGCAAGATTTCACACCGG 59.498 57.895 0.00 0.00 37.04 5.28
6257 13880 1.501741 CCGGCAAGATTTCACACCG 59.498 57.895 0.00 0.00 40.30 4.94
6258 13881 1.595093 CCCCGGCAAGATTTCACACC 61.595 60.000 0.00 0.00 0.00 4.16
6259 13882 1.595093 CCCCCGGCAAGATTTCACAC 61.595 60.000 0.00 0.00 0.00 3.82
6260 13883 1.304052 CCCCCGGCAAGATTTCACA 60.304 57.895 0.00 0.00 0.00 3.58
6261 13884 1.001393 TCCCCCGGCAAGATTTCAC 60.001 57.895 0.00 0.00 0.00 3.18
6262 13885 1.204786 TCTCCCCCGGCAAGATTTCA 61.205 55.000 0.00 0.00 0.00 2.69
6263 13886 0.034477 TTCTCCCCCGGCAAGATTTC 60.034 55.000 0.00 0.00 0.00 2.17
6264 13887 0.407918 TTTCTCCCCCGGCAAGATTT 59.592 50.000 0.00 0.00 0.00 2.17
6265 13888 0.323451 GTTTCTCCCCCGGCAAGATT 60.323 55.000 0.00 0.00 0.00 2.40
6266 13889 1.303282 GTTTCTCCCCCGGCAAGAT 59.697 57.895 0.00 0.00 0.00 2.40
6267 13890 2.754375 GTTTCTCCCCCGGCAAGA 59.246 61.111 0.00 0.00 0.00 3.02
6268 13891 2.361230 GGTTTCTCCCCCGGCAAG 60.361 66.667 0.00 0.00 0.00 4.01
6269 13892 2.466186 AAGGTTTCTCCCCCGGCAA 61.466 57.895 0.00 0.00 36.75 4.52
6270 13893 2.856988 AAGGTTTCTCCCCCGGCA 60.857 61.111 0.00 0.00 36.75 5.69
6271 13894 2.361230 CAAGGTTTCTCCCCCGGC 60.361 66.667 0.00 0.00 36.75 6.13
6272 13895 1.002502 GACAAGGTTTCTCCCCCGG 60.003 63.158 0.00 0.00 36.75 5.73
6273 13896 0.321653 CTGACAAGGTTTCTCCCCCG 60.322 60.000 0.00 0.00 36.75 5.73
6274 13897 0.038310 CCTGACAAGGTTTCTCCCCC 59.962 60.000 0.00 0.00 38.96 5.40
6275 13898 0.038310 CCCTGACAAGGTTTCTCCCC 59.962 60.000 0.00 0.00 42.74 4.81
6276 13899 1.003696 CTCCCTGACAAGGTTTCTCCC 59.996 57.143 0.00 0.00 42.74 4.30
6277 13900 1.003696 CCTCCCTGACAAGGTTTCTCC 59.996 57.143 0.00 0.00 42.74 3.71
6278 13901 1.978580 TCCTCCCTGACAAGGTTTCTC 59.021 52.381 0.00 0.00 42.74 2.87
6279 13902 2.106684 GTTCCTCCCTGACAAGGTTTCT 59.893 50.000 0.00 0.00 42.74 2.52
6280 13903 2.505405 GTTCCTCCCTGACAAGGTTTC 58.495 52.381 0.00 0.00 42.74 2.78
6281 13904 1.145119 GGTTCCTCCCTGACAAGGTTT 59.855 52.381 0.00 0.00 42.74 3.27
6282 13905 0.771755 GGTTCCTCCCTGACAAGGTT 59.228 55.000 0.00 0.00 42.74 3.50
6283 13906 2.464582 GGTTCCTCCCTGACAAGGT 58.535 57.895 0.00 0.00 42.74 3.50
6293 13916 3.327404 TCCGGCAAGGGTTCCTCC 61.327 66.667 0.00 0.00 41.52 4.30
6294 13917 1.262640 TACTCCGGCAAGGGTTCCTC 61.263 60.000 0.00 0.00 41.52 3.71
6295 13918 1.229400 TACTCCGGCAAGGGTTCCT 60.229 57.895 0.00 0.00 41.52 3.36
6296 13919 1.078637 GTACTCCGGCAAGGGTTCC 60.079 63.158 0.00 0.00 41.52 3.62
6297 13920 0.035739 TTGTACTCCGGCAAGGGTTC 59.964 55.000 0.00 0.00 41.52 3.62
6298 13921 0.475044 TTTGTACTCCGGCAAGGGTT 59.525 50.000 0.00 0.00 41.52 4.11
6299 13922 0.250597 GTTTGTACTCCGGCAAGGGT 60.251 55.000 0.00 0.00 41.52 4.34
6300 13923 0.958876 GGTTTGTACTCCGGCAAGGG 60.959 60.000 0.00 0.00 41.52 3.95
6301 13924 0.036306 AGGTTTGTACTCCGGCAAGG 59.964 55.000 0.00 0.00 42.97 3.61
6302 13925 1.535462 CAAGGTTTGTACTCCGGCAAG 59.465 52.381 0.00 0.00 0.00 4.01
6303 13926 1.600023 CAAGGTTTGTACTCCGGCAA 58.400 50.000 0.00 0.00 0.00 4.52
6304 13927 0.887387 GCAAGGTTTGTACTCCGGCA 60.887 55.000 0.00 0.00 0.00 5.69
6305 13928 1.583495 GGCAAGGTTTGTACTCCGGC 61.583 60.000 0.00 4.40 0.00 6.13
6306 13929 1.296056 CGGCAAGGTTTGTACTCCGG 61.296 60.000 0.00 0.00 32.55 5.14
6307 13930 1.296056 CCGGCAAGGTTTGTACTCCG 61.296 60.000 0.00 0.00 34.51 4.63
6308 13931 0.035739 TCCGGCAAGGTTTGTACTCC 59.964 55.000 0.00 0.00 41.99 3.85
6309 13932 1.439679 CTCCGGCAAGGTTTGTACTC 58.560 55.000 0.00 0.00 41.99 2.59
6310 13933 3.625745 CTCCGGCAAGGTTTGTACT 57.374 52.632 0.00 0.00 41.99 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.