Multiple sequence alignment - TraesCS5A01G116500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G116500 chr5A 100.000 6197 0 0 1 6197 238693559 238699755 0.000000e+00 11444.0
1 TraesCS5A01G116500 chr5A 74.415 598 135 16 1338 1926 413041601 413042189 2.230000e-59 241.0
2 TraesCS5A01G116500 chr5A 94.595 37 2 0 5959 5995 238699463 238699499 2.410000e-04 58.4
3 TraesCS5A01G116500 chr5A 94.595 37 2 0 5905 5941 238699517 238699553 2.410000e-04 58.4
4 TraesCS5A01G116500 chr5B 96.051 5596 135 35 649 6193 208257568 208263128 0.000000e+00 9031.0
5 TraesCS5A01G116500 chr5B 74.415 598 135 16 1338 1926 368486467 368487055 2.230000e-59 241.0
6 TraesCS5A01G116500 chr5B 86.603 209 28 0 294 502 566997949 566998157 1.340000e-56 231.0
7 TraesCS5A01G116500 chr5B 100.000 43 0 0 502 544 208257100 208257142 5.150000e-11 80.5
8 TraesCS5A01G116500 chr5B 94.595 37 2 0 5905 5941 208262878 208262914 2.410000e-04 58.4
9 TraesCS5A01G116500 chr5D 97.942 3159 41 9 623 3766 204074491 204077640 0.000000e+00 5452.0
10 TraesCS5A01G116500 chr5D 97.460 1929 34 6 3804 5721 204077635 204079559 0.000000e+00 3277.0
11 TraesCS5A01G116500 chr5D 91.155 554 25 10 5657 6193 204079560 204080106 0.000000e+00 730.0
12 TraesCS5A01G116500 chr5D 74.582 598 134 16 1338 1926 318442168 318442756 4.800000e-61 246.0
13 TraesCS5A01G116500 chr5D 94.595 37 2 0 5905 5941 204079875 204079911 2.410000e-04 58.4
14 TraesCS5A01G116500 chr4A 86.692 263 35 0 241 503 657525838 657526100 6.080000e-75 292.0
15 TraesCS5A01G116500 chr4A 83.113 302 51 0 201 502 644930082 644929781 6.120000e-70 276.0
16 TraesCS5A01G116500 chr4A 87.500 56 6 1 6083 6138 286882882 286882936 5.190000e-06 63.9
17 TraesCS5A01G116500 chr1D 79.931 289 55 3 4215 4501 430413539 430413826 6.290000e-50 209.0
18 TraesCS5A01G116500 chr3A 84.956 113 13 3 6084 6193 698273820 698273931 1.830000e-20 111.0
19 TraesCS5A01G116500 chr6B 88.333 60 3 2 6083 6139 85787342 85787284 1.110000e-07 69.4
20 TraesCS5A01G116500 chr6B 91.489 47 1 2 6095 6138 85787282 85787236 1.870000e-05 62.1
21 TraesCS5A01G116500 chr2D 92.308 39 3 0 406 444 633259689 633259651 8.680000e-04 56.5
22 TraesCS5A01G116500 chr3B 96.875 32 1 0 471 502 729595186 729595217 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G116500 chr5A 238693559 238699755 6196 False 3853.600000 11444 96.396667 1 6197 3 chr5A.!!$F2 6196
1 TraesCS5A01G116500 chr5A 413041601 413042189 588 False 241.000000 241 74.415000 1338 1926 1 chr5A.!!$F1 588
2 TraesCS5A01G116500 chr5B 208257100 208263128 6028 False 3056.633333 9031 96.882000 502 6193 3 chr5B.!!$F3 5691
3 TraesCS5A01G116500 chr5B 368486467 368487055 588 False 241.000000 241 74.415000 1338 1926 1 chr5B.!!$F1 588
4 TraesCS5A01G116500 chr5D 204074491 204080106 5615 False 2379.350000 5452 95.288000 623 6193 4 chr5D.!!$F2 5570
5 TraesCS5A01G116500 chr5D 318442168 318442756 588 False 246.000000 246 74.582000 1338 1926 1 chr5D.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.032714 GGTCTAGGTAGGTCCCGGTT 60.033 60.000 0.00 0.00 36.75 4.44 F
373 374 0.037232 GGAACGACCTCTTCCTGGTG 60.037 60.000 0.00 0.00 38.03 4.17 F
394 395 0.038021 GCCAAACGGGGTTAGGGTTA 59.962 55.000 0.00 0.00 37.04 2.85 F
475 476 0.179145 ATTCCAACGAGGCGTACGAG 60.179 55.000 21.65 9.11 39.99 4.18 F
1539 1865 0.031111 TCCCCTTCACCTCCGATCAT 60.031 55.000 0.00 0.00 0.00 2.45 F
1653 1979 2.554462 CGACTACATCTGGATCCACGAT 59.446 50.000 11.44 14.74 0.00 3.73 F
2268 2594 2.568425 GCGGTCGGGGTATAGTCCC 61.568 68.421 1.77 1.77 46.31 4.46 F
3120 3447 3.875134 ACTTTCACTGGTACTTGTTTCCG 59.125 43.478 0.00 0.00 0.00 4.30 F
3792 4121 0.481128 GGGAAACAGTGGGGGAGAAA 59.519 55.000 0.00 0.00 0.00 2.52 F
3805 4134 3.610911 GGGGAGAAACCTACTGTCAATG 58.389 50.000 0.00 0.00 38.98 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1607 0.616111 AGTCCTCGTCCCAGCAGAAT 60.616 55.000 0.00 0.0 0.00 2.40 R
1497 1823 1.153549 GTAGTGGAAGAGCGGCCAG 60.154 63.158 2.24 0.0 34.22 4.85 R
1536 1862 3.700970 TCGAAGCGGCCACCATGA 61.701 61.111 2.24 0.0 0.00 3.07 R
2268 2594 4.124851 AGTCCTATTAACAAGCTCCACG 57.875 45.455 0.00 0.0 0.00 4.94 R
2574 2900 0.526954 GCTTCTCATGGCGCAATTGG 60.527 55.000 10.83 0.0 0.00 3.16 R
3081 3408 2.029838 AGTATCAGAAGGCGCAAAGG 57.970 50.000 10.83 0.0 0.00 3.11 R
3320 3649 3.114606 TGATATCTGCTGTCCCCAGAAA 58.885 45.455 3.98 0.0 42.12 2.52 R
4202 4531 3.937706 CTGACAAGGAATAGCTGTTGAGG 59.062 47.826 0.00 0.0 0.00 3.86 R
5184 5522 1.863267 GACTTCATCATGCCTCCTCG 58.137 55.000 0.00 0.0 0.00 4.63 R
5781 6212 2.268920 GGATCACGGCCTGAAGCA 59.731 61.111 0.00 0.0 46.50 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.007644 TGCTCACCGGGCACAGAG 62.008 66.667 6.32 6.09 34.56 3.35
27 28 4.767255 GCTCACCGGGCACAGAGG 62.767 72.222 6.32 0.00 0.00 3.69
28 29 4.767255 CTCACCGGGCACAGAGGC 62.767 72.222 6.32 0.00 43.27 4.70
46 47 3.728373 GACGGGGCTGGGTTCCAT 61.728 66.667 0.00 0.00 30.82 3.41
47 48 3.264845 ACGGGGCTGGGTTCCATT 61.265 61.111 0.00 0.00 30.82 3.16
48 49 2.440247 CGGGGCTGGGTTCCATTC 60.440 66.667 0.00 0.00 30.82 2.67
49 50 2.042944 GGGGCTGGGTTCCATTCC 60.043 66.667 0.00 0.00 30.82 3.01
50 51 2.770130 GGGCTGGGTTCCATTCCA 59.230 61.111 7.38 0.00 30.82 3.53
51 52 1.311059 GGGCTGGGTTCCATTCCAT 59.689 57.895 7.38 0.00 30.82 3.41
52 53 0.756815 GGGCTGGGTTCCATTCCATC 60.757 60.000 7.38 0.00 30.82 3.51
53 54 0.756815 GGCTGGGTTCCATTCCATCC 60.757 60.000 0.00 0.00 32.98 3.51
54 55 0.756815 GCTGGGTTCCATTCCATCCC 60.757 60.000 0.00 0.00 38.68 3.85
55 56 0.106015 CTGGGTTCCATTCCATCCCC 60.106 60.000 0.00 0.00 37.52 4.81
56 57 0.554865 TGGGTTCCATTCCATCCCCT 60.555 55.000 0.00 0.00 37.52 4.79
57 58 0.106015 GGGTTCCATTCCATCCCCTG 60.106 60.000 0.00 0.00 32.66 4.45
58 59 0.756815 GGTTCCATTCCATCCCCTGC 60.757 60.000 0.00 0.00 0.00 4.85
59 60 0.259938 GTTCCATTCCATCCCCTGCT 59.740 55.000 0.00 0.00 0.00 4.24
60 61 1.494721 GTTCCATTCCATCCCCTGCTA 59.505 52.381 0.00 0.00 0.00 3.49
61 62 1.438469 TCCATTCCATCCCCTGCTAG 58.562 55.000 0.00 0.00 0.00 3.42
62 63 0.251077 CCATTCCATCCCCTGCTAGC 60.251 60.000 8.10 8.10 0.00 3.42
63 64 0.251077 CATTCCATCCCCTGCTAGCC 60.251 60.000 13.29 0.00 0.00 3.93
64 65 1.772819 ATTCCATCCCCTGCTAGCCG 61.773 60.000 13.29 5.57 0.00 5.52
65 66 2.844362 CCATCCCCTGCTAGCCGA 60.844 66.667 13.29 2.74 0.00 5.54
66 67 2.443394 CCATCCCCTGCTAGCCGAA 61.443 63.158 13.29 0.00 0.00 4.30
67 68 1.070445 CATCCCCTGCTAGCCGAAG 59.930 63.158 13.29 2.59 0.00 3.79
85 86 4.830573 GCAAAGTGGCCTCTTCCT 57.169 55.556 19.90 3.23 0.00 3.36
86 87 2.261215 GCAAAGTGGCCTCTTCCTG 58.739 57.895 19.90 15.94 0.00 3.86
87 88 0.538287 GCAAAGTGGCCTCTTCCTGT 60.538 55.000 19.90 2.11 0.00 4.00
88 89 1.242076 CAAAGTGGCCTCTTCCTGTG 58.758 55.000 19.90 10.97 0.00 3.66
89 90 0.846693 AAAGTGGCCTCTTCCTGTGT 59.153 50.000 19.90 0.99 0.00 3.72
90 91 0.846693 AAGTGGCCTCTTCCTGTGTT 59.153 50.000 14.34 0.00 0.00 3.32
91 92 0.846693 AGTGGCCTCTTCCTGTGTTT 59.153 50.000 3.32 0.00 0.00 2.83
92 93 0.954452 GTGGCCTCTTCCTGTGTTTG 59.046 55.000 3.32 0.00 0.00 2.93
93 94 0.550914 TGGCCTCTTCCTGTGTTTGT 59.449 50.000 3.32 0.00 0.00 2.83
94 95 1.771854 TGGCCTCTTCCTGTGTTTGTA 59.228 47.619 3.32 0.00 0.00 2.41
95 96 2.224523 TGGCCTCTTCCTGTGTTTGTAG 60.225 50.000 3.32 0.00 0.00 2.74
96 97 2.224548 GGCCTCTTCCTGTGTTTGTAGT 60.225 50.000 0.00 0.00 0.00 2.73
97 98 3.477530 GCCTCTTCCTGTGTTTGTAGTT 58.522 45.455 0.00 0.00 0.00 2.24
98 99 3.883489 GCCTCTTCCTGTGTTTGTAGTTT 59.117 43.478 0.00 0.00 0.00 2.66
99 100 4.261197 GCCTCTTCCTGTGTTTGTAGTTTG 60.261 45.833 0.00 0.00 0.00 2.93
100 101 5.123227 CCTCTTCCTGTGTTTGTAGTTTGA 58.877 41.667 0.00 0.00 0.00 2.69
101 102 5.007724 CCTCTTCCTGTGTTTGTAGTTTGAC 59.992 44.000 0.00 0.00 0.00 3.18
102 103 5.741011 TCTTCCTGTGTTTGTAGTTTGACT 58.259 37.500 0.00 0.00 0.00 3.41
103 104 5.815740 TCTTCCTGTGTTTGTAGTTTGACTC 59.184 40.000 0.00 0.00 0.00 3.36
104 105 5.353394 TCCTGTGTTTGTAGTTTGACTCT 57.647 39.130 0.00 0.00 0.00 3.24
105 106 5.357257 TCCTGTGTTTGTAGTTTGACTCTC 58.643 41.667 0.00 0.00 0.00 3.20
106 107 4.511826 CCTGTGTTTGTAGTTTGACTCTCC 59.488 45.833 0.00 0.00 0.00 3.71
107 108 4.448210 TGTGTTTGTAGTTTGACTCTCCC 58.552 43.478 0.00 0.00 0.00 4.30
108 109 4.163458 TGTGTTTGTAGTTTGACTCTCCCT 59.837 41.667 0.00 0.00 0.00 4.20
109 110 5.123936 GTGTTTGTAGTTTGACTCTCCCTT 58.876 41.667 0.00 0.00 0.00 3.95
110 111 5.007724 GTGTTTGTAGTTTGACTCTCCCTTG 59.992 44.000 0.00 0.00 0.00 3.61
111 112 5.123936 GTTTGTAGTTTGACTCTCCCTTGT 58.876 41.667 0.00 0.00 0.00 3.16
112 113 6.126997 TGTTTGTAGTTTGACTCTCCCTTGTA 60.127 38.462 0.00 0.00 0.00 2.41
113 114 5.723672 TGTAGTTTGACTCTCCCTTGTAG 57.276 43.478 0.00 0.00 0.00 2.74
114 115 4.527038 TGTAGTTTGACTCTCCCTTGTAGG 59.473 45.833 0.00 0.00 34.30 3.18
115 116 2.303311 AGTTTGACTCTCCCTTGTAGGC 59.697 50.000 0.00 0.00 32.73 3.93
116 117 1.276622 TTGACTCTCCCTTGTAGGCC 58.723 55.000 0.00 0.00 32.73 5.19
117 118 0.413832 TGACTCTCCCTTGTAGGCCT 59.586 55.000 11.78 11.78 32.73 5.19
118 119 1.203313 TGACTCTCCCTTGTAGGCCTT 60.203 52.381 12.58 0.00 32.73 4.35
119 120 1.483004 GACTCTCCCTTGTAGGCCTTC 59.517 57.143 12.58 6.47 32.73 3.46
120 121 1.203313 ACTCTCCCTTGTAGGCCTTCA 60.203 52.381 12.58 10.08 32.73 3.02
121 122 1.484240 CTCTCCCTTGTAGGCCTTCAG 59.516 57.143 12.58 4.34 32.73 3.02
122 123 0.543749 CTCCCTTGTAGGCCTTCAGG 59.456 60.000 12.58 13.34 32.73 3.86
123 124 0.118346 TCCCTTGTAGGCCTTCAGGA 59.882 55.000 21.12 17.49 36.78 3.86
124 125 1.216990 CCCTTGTAGGCCTTCAGGAT 58.783 55.000 21.12 0.00 36.78 3.24
125 126 1.566231 CCCTTGTAGGCCTTCAGGATT 59.434 52.381 21.12 0.00 36.78 3.01
126 127 2.024941 CCCTTGTAGGCCTTCAGGATTT 60.025 50.000 21.12 0.00 36.78 2.17
127 128 3.019564 CCTTGTAGGCCTTCAGGATTTG 58.980 50.000 21.12 2.53 37.39 2.32
128 129 3.308402 CCTTGTAGGCCTTCAGGATTTGA 60.308 47.826 21.12 0.60 37.39 2.69
129 130 3.634397 TGTAGGCCTTCAGGATTTGAG 57.366 47.619 12.58 0.00 37.07 3.02
130 131 2.293170 GTAGGCCTTCAGGATTTGAGC 58.707 52.381 12.58 0.00 37.07 4.26
131 132 0.998145 AGGCCTTCAGGATTTGAGCT 59.002 50.000 0.00 0.00 37.07 4.09
132 133 1.357079 AGGCCTTCAGGATTTGAGCTT 59.643 47.619 0.00 0.00 37.07 3.74
133 134 2.578021 AGGCCTTCAGGATTTGAGCTTA 59.422 45.455 0.00 0.00 37.07 3.09
134 135 2.948315 GGCCTTCAGGATTTGAGCTTAG 59.052 50.000 0.00 0.00 37.07 2.18
135 136 3.370953 GGCCTTCAGGATTTGAGCTTAGA 60.371 47.826 0.00 0.00 37.07 2.10
136 137 4.265073 GCCTTCAGGATTTGAGCTTAGAA 58.735 43.478 0.00 0.00 37.07 2.10
137 138 4.702131 GCCTTCAGGATTTGAGCTTAGAAA 59.298 41.667 0.00 0.00 37.07 2.52
138 139 5.163673 GCCTTCAGGATTTGAGCTTAGAAAG 60.164 44.000 0.00 0.00 37.07 2.62
139 140 5.163673 CCTTCAGGATTTGAGCTTAGAAAGC 60.164 44.000 3.43 3.43 46.33 3.51
147 148 3.561429 CTTAGAAAGCACGCGCCA 58.439 55.556 5.73 0.00 39.83 5.69
148 149 2.089854 CTTAGAAAGCACGCGCCAT 58.910 52.632 5.73 0.00 39.83 4.40
149 150 0.247814 CTTAGAAAGCACGCGCCATG 60.248 55.000 5.73 0.96 39.83 3.66
150 151 0.672091 TTAGAAAGCACGCGCCATGA 60.672 50.000 5.73 0.00 39.83 3.07
151 152 1.083806 TAGAAAGCACGCGCCATGAG 61.084 55.000 5.73 0.00 39.83 2.90
152 153 2.358615 AAAGCACGCGCCATGAGA 60.359 55.556 5.73 0.00 39.83 3.27
153 154 1.911293 GAAAGCACGCGCCATGAGAA 61.911 55.000 5.73 0.00 39.83 2.87
154 155 1.308069 AAAGCACGCGCCATGAGAAT 61.308 50.000 5.73 0.00 39.83 2.40
155 156 1.709147 AAGCACGCGCCATGAGAATC 61.709 55.000 5.73 0.00 39.83 2.52
156 157 3.017323 CACGCGCCATGAGAATCC 58.983 61.111 5.73 0.00 0.00 3.01
157 158 1.522355 CACGCGCCATGAGAATCCT 60.522 57.895 5.73 0.00 0.00 3.24
158 159 1.091771 CACGCGCCATGAGAATCCTT 61.092 55.000 5.73 0.00 0.00 3.36
159 160 0.392998 ACGCGCCATGAGAATCCTTT 60.393 50.000 5.73 0.00 0.00 3.11
160 161 0.734889 CGCGCCATGAGAATCCTTTT 59.265 50.000 0.00 0.00 0.00 2.27
161 162 1.939934 CGCGCCATGAGAATCCTTTTA 59.060 47.619 0.00 0.00 0.00 1.52
162 163 2.549754 CGCGCCATGAGAATCCTTTTAT 59.450 45.455 0.00 0.00 0.00 1.40
163 164 3.003689 CGCGCCATGAGAATCCTTTTATT 59.996 43.478 0.00 0.00 0.00 1.40
164 165 4.498009 CGCGCCATGAGAATCCTTTTATTT 60.498 41.667 0.00 0.00 0.00 1.40
165 166 5.277779 CGCGCCATGAGAATCCTTTTATTTA 60.278 40.000 0.00 0.00 0.00 1.40
166 167 6.568462 CGCGCCATGAGAATCCTTTTATTTAT 60.568 38.462 0.00 0.00 0.00 1.40
167 168 7.147976 GCGCCATGAGAATCCTTTTATTTATT 58.852 34.615 0.00 0.00 0.00 1.40
168 169 7.653311 GCGCCATGAGAATCCTTTTATTTATTT 59.347 33.333 0.00 0.00 0.00 1.40
192 193 9.646522 TTTAACGATTTATAGGTCTAGGTAGGT 57.353 33.333 0.00 0.00 0.00 3.08
193 194 7.757941 AACGATTTATAGGTCTAGGTAGGTC 57.242 40.000 0.00 0.00 0.00 3.85
194 195 6.244654 ACGATTTATAGGTCTAGGTAGGTCC 58.755 44.000 0.00 0.00 0.00 4.46
195 196 5.651576 CGATTTATAGGTCTAGGTAGGTCCC 59.348 48.000 0.00 0.00 36.75 4.46
196 197 4.647564 TTATAGGTCTAGGTAGGTCCCG 57.352 50.000 0.00 0.00 36.75 5.14
197 198 1.143813 TAGGTCTAGGTAGGTCCCGG 58.856 60.000 0.00 0.00 36.75 5.73
198 199 0.923233 AGGTCTAGGTAGGTCCCGGT 60.923 60.000 0.00 0.00 36.75 5.28
199 200 0.032714 GGTCTAGGTAGGTCCCGGTT 60.033 60.000 0.00 0.00 36.75 4.44
200 201 1.215423 GGTCTAGGTAGGTCCCGGTTA 59.785 57.143 0.00 0.00 36.75 2.85
201 202 2.358195 GGTCTAGGTAGGTCCCGGTTAA 60.358 54.545 0.00 0.00 36.75 2.01
202 203 2.690497 GTCTAGGTAGGTCCCGGTTAAC 59.310 54.545 0.00 0.00 36.75 2.01
203 204 2.582636 TCTAGGTAGGTCCCGGTTAACT 59.417 50.000 5.42 0.00 36.75 2.24
204 205 1.857965 AGGTAGGTCCCGGTTAACTC 58.142 55.000 5.42 0.00 36.75 3.01
205 206 1.360507 AGGTAGGTCCCGGTTAACTCT 59.639 52.381 5.42 0.00 36.75 3.24
206 207 1.479730 GGTAGGTCCCGGTTAACTCTG 59.520 57.143 5.42 0.00 0.00 3.35
207 208 2.174360 GTAGGTCCCGGTTAACTCTGT 58.826 52.381 5.42 0.00 0.00 3.41
208 209 2.610438 AGGTCCCGGTTAACTCTGTA 57.390 50.000 5.42 0.00 0.00 2.74
209 210 3.111741 AGGTCCCGGTTAACTCTGTAT 57.888 47.619 5.42 0.00 0.00 2.29
210 211 4.255510 AGGTCCCGGTTAACTCTGTATA 57.744 45.455 5.42 0.00 0.00 1.47
211 212 3.956848 AGGTCCCGGTTAACTCTGTATAC 59.043 47.826 5.42 0.00 0.00 1.47
212 213 3.068732 GGTCCCGGTTAACTCTGTATACC 59.931 52.174 5.42 1.61 0.00 2.73
217 218 4.531332 CGGTTAACTCTGTATACCGTAGC 58.469 47.826 5.42 0.00 44.90 3.58
218 219 4.035558 CGGTTAACTCTGTATACCGTAGCA 59.964 45.833 5.42 0.00 44.90 3.49
219 220 5.449041 CGGTTAACTCTGTATACCGTAGCAA 60.449 44.000 5.42 0.00 44.90 3.91
220 221 6.332630 GGTTAACTCTGTATACCGTAGCAAA 58.667 40.000 5.42 0.00 0.00 3.68
221 222 6.813152 GGTTAACTCTGTATACCGTAGCAAAA 59.187 38.462 5.42 0.00 0.00 2.44
222 223 7.493645 GGTTAACTCTGTATACCGTAGCAAAAT 59.506 37.037 5.42 0.00 0.00 1.82
223 224 8.538039 GTTAACTCTGTATACCGTAGCAAAATC 58.462 37.037 0.00 0.00 0.00 2.17
224 225 5.279384 ACTCTGTATACCGTAGCAAAATCG 58.721 41.667 0.00 0.00 0.00 3.34
225 226 4.046462 TCTGTATACCGTAGCAAAATCGC 58.954 43.478 0.00 0.00 0.00 4.58
226 227 3.783191 TGTATACCGTAGCAAAATCGCA 58.217 40.909 0.00 0.00 0.00 5.10
227 228 3.799963 TGTATACCGTAGCAAAATCGCAG 59.200 43.478 0.00 0.00 0.00 5.18
228 229 2.373540 TACCGTAGCAAAATCGCAGT 57.626 45.000 0.00 0.00 0.00 4.40
229 230 2.373540 ACCGTAGCAAAATCGCAGTA 57.626 45.000 0.00 0.00 0.00 2.74
230 231 1.997606 ACCGTAGCAAAATCGCAGTAC 59.002 47.619 0.00 0.00 0.00 2.73
231 232 1.326548 CCGTAGCAAAATCGCAGTACC 59.673 52.381 0.00 0.00 0.00 3.34
232 233 2.268298 CGTAGCAAAATCGCAGTACCT 58.732 47.619 0.00 0.00 0.00 3.08
233 234 2.671396 CGTAGCAAAATCGCAGTACCTT 59.329 45.455 0.00 0.00 0.00 3.50
234 235 3.241995 CGTAGCAAAATCGCAGTACCTTC 60.242 47.826 0.00 0.00 0.00 3.46
235 236 1.732259 AGCAAAATCGCAGTACCTTCG 59.268 47.619 0.00 0.00 0.00 3.79
236 237 1.790481 GCAAAATCGCAGTACCTTCGC 60.790 52.381 0.00 0.00 0.00 4.70
237 238 1.732259 CAAAATCGCAGTACCTTCGCT 59.268 47.619 0.00 0.00 0.00 4.93
238 239 1.641577 AAATCGCAGTACCTTCGCTC 58.358 50.000 0.00 0.00 0.00 5.03
239 240 0.179108 AATCGCAGTACCTTCGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
240 241 1.320344 ATCGCAGTACCTTCGCTCCA 61.320 55.000 0.00 0.00 0.00 3.86
241 242 1.080093 CGCAGTACCTTCGCTCCAA 60.080 57.895 0.00 0.00 0.00 3.53
242 243 0.669318 CGCAGTACCTTCGCTCCAAA 60.669 55.000 0.00 0.00 0.00 3.28
243 244 1.079503 GCAGTACCTTCGCTCCAAAG 58.920 55.000 0.00 0.00 0.00 2.77
244 245 1.337823 GCAGTACCTTCGCTCCAAAGA 60.338 52.381 0.00 0.00 0.00 2.52
245 246 2.678190 GCAGTACCTTCGCTCCAAAGAT 60.678 50.000 0.00 0.00 0.00 2.40
246 247 3.600388 CAGTACCTTCGCTCCAAAGATT 58.400 45.455 0.00 0.00 0.00 2.40
247 248 4.003648 CAGTACCTTCGCTCCAAAGATTT 58.996 43.478 0.00 0.00 0.00 2.17
248 249 4.003648 AGTACCTTCGCTCCAAAGATTTG 58.996 43.478 0.00 0.00 37.90 2.32
249 250 1.541588 ACCTTCGCTCCAAAGATTTGC 59.458 47.619 0.00 0.00 36.86 3.68
250 251 1.541147 CCTTCGCTCCAAAGATTTGCA 59.459 47.619 0.00 0.00 36.86 4.08
251 252 2.165030 CCTTCGCTCCAAAGATTTGCAT 59.835 45.455 0.00 0.00 36.86 3.96
252 253 3.367703 CCTTCGCTCCAAAGATTTGCATT 60.368 43.478 0.00 0.00 36.86 3.56
253 254 3.940209 TCGCTCCAAAGATTTGCATTT 57.060 38.095 0.00 0.00 36.86 2.32
254 255 4.255833 TCGCTCCAAAGATTTGCATTTT 57.744 36.364 0.00 0.00 36.86 1.82
255 256 4.236935 TCGCTCCAAAGATTTGCATTTTC 58.763 39.130 0.00 0.00 36.86 2.29
256 257 4.022068 TCGCTCCAAAGATTTGCATTTTCT 60.022 37.500 0.00 0.00 36.86 2.52
257 258 4.325472 CGCTCCAAAGATTTGCATTTTCTC 59.675 41.667 0.00 0.00 36.86 2.87
258 259 5.476614 GCTCCAAAGATTTGCATTTTCTCT 58.523 37.500 0.00 0.00 36.86 3.10
259 260 5.930569 GCTCCAAAGATTTGCATTTTCTCTT 59.069 36.000 0.00 0.00 36.86 2.85
260 261 6.426025 GCTCCAAAGATTTGCATTTTCTCTTT 59.574 34.615 0.00 0.00 36.79 2.52
261 262 7.599998 GCTCCAAAGATTTGCATTTTCTCTTTA 59.400 33.333 0.00 0.00 35.12 1.85
262 263 9.480053 CTCCAAAGATTTGCATTTTCTCTTTAA 57.520 29.630 0.00 0.00 35.12 1.52
263 264 9.480053 TCCAAAGATTTGCATTTTCTCTTTAAG 57.520 29.630 0.00 0.00 35.12 1.85
264 265 8.225777 CCAAAGATTTGCATTTTCTCTTTAAGC 58.774 33.333 0.00 0.00 35.12 3.09
265 266 8.985805 CAAAGATTTGCATTTTCTCTTTAAGCT 58.014 29.630 0.00 0.00 35.12 3.74
267 268 9.852091 AAGATTTGCATTTTCTCTTTAAGCTAG 57.148 29.630 0.00 0.00 0.00 3.42
268 269 7.972832 AGATTTGCATTTTCTCTTTAAGCTAGC 59.027 33.333 6.62 6.62 0.00 3.42
269 270 6.573664 TTGCATTTTCTCTTTAAGCTAGCA 57.426 33.333 18.83 0.00 0.00 3.49
270 271 6.764308 TGCATTTTCTCTTTAAGCTAGCAT 57.236 33.333 18.83 7.77 0.00 3.79
271 272 7.864108 TGCATTTTCTCTTTAAGCTAGCATA 57.136 32.000 18.83 6.52 0.00 3.14
272 273 8.279970 TGCATTTTCTCTTTAAGCTAGCATAA 57.720 30.769 18.83 13.22 0.00 1.90
273 274 8.739039 TGCATTTTCTCTTTAAGCTAGCATAAA 58.261 29.630 20.54 20.54 0.00 1.40
274 275 9.573133 GCATTTTCTCTTTAAGCTAGCATAAAA 57.427 29.630 21.67 14.89 0.00 1.52
287 288 9.454859 AAGCTAGCATAAAACTAAACAAGATCT 57.545 29.630 18.83 0.00 0.00 2.75
292 293 9.959721 AGCATAAAACTAAACAAGATCTAAGGA 57.040 29.630 0.00 0.00 0.00 3.36
297 298 8.850007 AAACTAAACAAGATCTAAGGAGGAAC 57.150 34.615 0.00 0.00 0.00 3.62
298 299 7.554959 ACTAAACAAGATCTAAGGAGGAACA 57.445 36.000 0.00 0.00 0.00 3.18
299 300 8.152023 ACTAAACAAGATCTAAGGAGGAACAT 57.848 34.615 0.00 0.00 0.00 2.71
300 301 8.043710 ACTAAACAAGATCTAAGGAGGAACATG 58.956 37.037 0.00 0.00 0.00 3.21
301 302 6.627087 AACAAGATCTAAGGAGGAACATGA 57.373 37.500 0.00 0.00 0.00 3.07
302 303 6.627087 ACAAGATCTAAGGAGGAACATGAA 57.373 37.500 0.00 0.00 0.00 2.57
303 304 7.020827 ACAAGATCTAAGGAGGAACATGAAA 57.979 36.000 0.00 0.00 0.00 2.69
304 305 7.461749 ACAAGATCTAAGGAGGAACATGAAAA 58.538 34.615 0.00 0.00 0.00 2.29
305 306 8.112183 ACAAGATCTAAGGAGGAACATGAAAAT 58.888 33.333 0.00 0.00 0.00 1.82
306 307 8.404000 CAAGATCTAAGGAGGAACATGAAAATG 58.596 37.037 0.00 0.00 0.00 2.32
307 308 7.865820 AGATCTAAGGAGGAACATGAAAATGA 58.134 34.615 0.00 0.00 0.00 2.57
308 309 7.772757 AGATCTAAGGAGGAACATGAAAATGAC 59.227 37.037 0.00 0.00 0.00 3.06
309 310 6.778821 TCTAAGGAGGAACATGAAAATGACA 58.221 36.000 0.00 0.00 0.00 3.58
310 311 5.972107 AAGGAGGAACATGAAAATGACAG 57.028 39.130 0.00 0.00 0.00 3.51
311 312 4.338879 AGGAGGAACATGAAAATGACAGG 58.661 43.478 0.00 0.00 0.00 4.00
312 313 4.082125 GGAGGAACATGAAAATGACAGGT 58.918 43.478 0.00 0.00 33.77 4.00
313 314 4.082571 GGAGGAACATGAAAATGACAGGTG 60.083 45.833 0.00 0.00 32.72 4.00
314 315 3.828451 AGGAACATGAAAATGACAGGTGG 59.172 43.478 0.00 0.00 32.72 4.61
315 316 3.056607 GGAACATGAAAATGACAGGTGGG 60.057 47.826 0.00 0.00 32.72 4.61
316 317 2.528564 ACATGAAAATGACAGGTGGGG 58.471 47.619 0.00 0.00 31.22 4.96
317 318 2.158325 ACATGAAAATGACAGGTGGGGT 60.158 45.455 0.00 0.00 31.22 4.95
318 319 2.286365 TGAAAATGACAGGTGGGGTC 57.714 50.000 0.00 0.00 35.83 4.46
319 320 1.165270 GAAAATGACAGGTGGGGTCG 58.835 55.000 0.00 0.00 38.10 4.79
320 321 0.768622 AAAATGACAGGTGGGGTCGA 59.231 50.000 0.00 0.00 38.10 4.20
321 322 0.324943 AAATGACAGGTGGGGTCGAG 59.675 55.000 0.00 0.00 38.10 4.04
322 323 0.544357 AATGACAGGTGGGGTCGAGA 60.544 55.000 0.00 0.00 38.10 4.04
323 324 0.325671 ATGACAGGTGGGGTCGAGAT 60.326 55.000 0.00 0.00 38.10 2.75
324 325 1.257750 TGACAGGTGGGGTCGAGATG 61.258 60.000 0.00 0.00 38.10 2.90
325 326 1.229209 ACAGGTGGGGTCGAGATGT 60.229 57.895 0.00 0.00 0.00 3.06
326 327 1.258445 ACAGGTGGGGTCGAGATGTC 61.258 60.000 0.00 0.00 0.00 3.06
327 328 1.078528 AGGTGGGGTCGAGATGTCA 59.921 57.895 0.00 0.00 0.00 3.58
328 329 0.972983 AGGTGGGGTCGAGATGTCAG 60.973 60.000 0.00 0.00 0.00 3.51
329 330 1.258445 GGTGGGGTCGAGATGTCAGT 61.258 60.000 0.00 0.00 0.00 3.41
330 331 0.108615 GTGGGGTCGAGATGTCAGTG 60.109 60.000 0.00 0.00 0.00 3.66
331 332 0.251608 TGGGGTCGAGATGTCAGTGA 60.252 55.000 0.00 0.00 0.00 3.41
332 333 0.457851 GGGGTCGAGATGTCAGTGAG 59.542 60.000 0.00 0.00 0.00 3.51
333 334 1.464734 GGGTCGAGATGTCAGTGAGA 58.535 55.000 0.00 0.00 0.00 3.27
334 335 1.819288 GGGTCGAGATGTCAGTGAGAA 59.181 52.381 0.00 0.00 0.00 2.87
335 336 2.428890 GGGTCGAGATGTCAGTGAGAAT 59.571 50.000 0.00 0.00 0.00 2.40
336 337 3.632604 GGGTCGAGATGTCAGTGAGAATA 59.367 47.826 0.00 0.00 0.00 1.75
337 338 4.279671 GGGTCGAGATGTCAGTGAGAATAT 59.720 45.833 0.00 0.00 0.00 1.28
338 339 5.457140 GGTCGAGATGTCAGTGAGAATATC 58.543 45.833 0.00 0.00 0.00 1.63
339 340 5.457140 GTCGAGATGTCAGTGAGAATATCC 58.543 45.833 0.00 0.00 0.00 2.59
340 341 5.240623 GTCGAGATGTCAGTGAGAATATCCT 59.759 44.000 0.00 0.00 0.00 3.24
341 342 6.428465 GTCGAGATGTCAGTGAGAATATCCTA 59.572 42.308 0.00 0.00 0.00 2.94
342 343 7.120579 GTCGAGATGTCAGTGAGAATATCCTAT 59.879 40.741 0.00 0.00 0.00 2.57
343 344 7.120432 TCGAGATGTCAGTGAGAATATCCTATG 59.880 40.741 0.00 0.00 0.00 2.23
344 345 7.120432 CGAGATGTCAGTGAGAATATCCTATGA 59.880 40.741 0.00 0.00 0.00 2.15
345 346 8.898303 AGATGTCAGTGAGAATATCCTATGAT 57.102 34.615 0.00 0.00 34.87 2.45
346 347 8.970020 AGATGTCAGTGAGAATATCCTATGATC 58.030 37.037 0.00 0.00 32.18 2.92
347 348 7.473735 TGTCAGTGAGAATATCCTATGATCC 57.526 40.000 0.00 0.00 32.18 3.36
348 349 7.244558 TGTCAGTGAGAATATCCTATGATCCT 58.755 38.462 0.00 0.00 32.18 3.24
349 350 7.178097 TGTCAGTGAGAATATCCTATGATCCTG 59.822 40.741 0.00 0.00 32.18 3.86
350 351 6.666980 TCAGTGAGAATATCCTATGATCCTGG 59.333 42.308 0.00 0.00 32.18 4.45
351 352 6.440010 CAGTGAGAATATCCTATGATCCTGGT 59.560 42.308 0.00 0.00 32.18 4.00
352 353 6.667414 AGTGAGAATATCCTATGATCCTGGTC 59.333 42.308 0.00 0.00 32.18 4.02
353 354 5.654209 TGAGAATATCCTATGATCCTGGTCG 59.346 44.000 0.00 0.00 32.18 4.79
354 355 4.959210 AGAATATCCTATGATCCTGGTCGG 59.041 45.833 0.00 0.00 32.18 4.79
355 356 1.944177 ATCCTATGATCCTGGTCGGG 58.056 55.000 0.00 0.00 0.00 5.14
356 357 0.857675 TCCTATGATCCTGGTCGGGA 59.142 55.000 0.44 0.44 39.95 5.14
357 358 1.219469 TCCTATGATCCTGGTCGGGAA 59.781 52.381 2.27 0.00 39.02 3.97
358 359 1.344763 CCTATGATCCTGGTCGGGAAC 59.655 57.143 2.27 0.93 39.02 3.62
371 372 1.597461 GGGAACGACCTCTTCCTGG 59.403 63.158 0.00 0.00 37.84 4.45
372 373 1.192803 GGGAACGACCTCTTCCTGGT 61.193 60.000 0.00 0.00 37.84 4.00
373 374 0.037232 GGAACGACCTCTTCCTGGTG 60.037 60.000 0.00 0.00 38.03 4.17
374 375 0.670854 GAACGACCTCTTCCTGGTGC 60.671 60.000 0.00 0.00 38.03 5.01
375 376 2.125912 CGACCTCTTCCTGGTGCG 60.126 66.667 0.00 0.00 38.03 5.34
376 377 2.435059 GACCTCTTCCTGGTGCGC 60.435 66.667 0.00 0.00 38.03 6.09
377 378 3.959991 GACCTCTTCCTGGTGCGCC 62.960 68.421 10.11 10.11 38.03 6.53
378 379 4.020617 CCTCTTCCTGGTGCGCCA 62.021 66.667 19.93 19.93 43.73 5.69
379 380 2.032528 CTCTTCCTGGTGCGCCAA 59.967 61.111 21.56 2.97 45.51 4.52
380 381 1.600636 CTCTTCCTGGTGCGCCAAA 60.601 57.895 21.56 11.84 45.51 3.28
381 382 1.856265 CTCTTCCTGGTGCGCCAAAC 61.856 60.000 21.56 0.00 45.51 2.93
382 383 3.254014 CTTCCTGGTGCGCCAAACG 62.254 63.158 21.56 8.83 45.51 3.60
388 389 2.979120 GTGCGCCAAACGGGGTTA 60.979 61.111 4.18 0.00 43.93 2.85
389 390 2.670251 TGCGCCAAACGGGGTTAG 60.670 61.111 4.18 0.00 43.93 2.34
390 391 3.436924 GCGCCAAACGGGGTTAGG 61.437 66.667 0.00 0.00 43.93 2.69
391 392 2.748647 CGCCAAACGGGGTTAGGG 60.749 66.667 0.00 0.00 38.44 3.53
392 393 2.437449 GCCAAACGGGGTTAGGGT 59.563 61.111 0.00 0.00 37.04 4.34
393 394 1.228644 GCCAAACGGGGTTAGGGTT 60.229 57.895 0.00 0.00 37.04 4.11
394 395 0.038021 GCCAAACGGGGTTAGGGTTA 59.962 55.000 0.00 0.00 37.04 2.85
395 396 1.951895 GCCAAACGGGGTTAGGGTTAG 60.952 57.143 0.00 0.00 37.04 2.34
396 397 1.629861 CCAAACGGGGTTAGGGTTAGA 59.370 52.381 0.00 0.00 0.00 2.10
397 398 2.040145 CCAAACGGGGTTAGGGTTAGAA 59.960 50.000 0.00 0.00 0.00 2.10
398 399 3.308617 CCAAACGGGGTTAGGGTTAGAAT 60.309 47.826 0.00 0.00 0.00 2.40
399 400 4.338012 CAAACGGGGTTAGGGTTAGAATT 58.662 43.478 0.00 0.00 0.00 2.17
400 401 3.639672 ACGGGGTTAGGGTTAGAATTG 57.360 47.619 0.00 0.00 0.00 2.32
401 402 3.183801 ACGGGGTTAGGGTTAGAATTGA 58.816 45.455 0.00 0.00 0.00 2.57
402 403 3.784202 ACGGGGTTAGGGTTAGAATTGAT 59.216 43.478 0.00 0.00 0.00 2.57
403 404 4.141551 ACGGGGTTAGGGTTAGAATTGATC 60.142 45.833 0.00 0.00 0.00 2.92
404 405 4.141574 CGGGGTTAGGGTTAGAATTGATCA 60.142 45.833 0.00 0.00 0.00 2.92
405 406 5.377478 GGGGTTAGGGTTAGAATTGATCAG 58.623 45.833 0.00 0.00 0.00 2.90
406 407 5.377478 GGGTTAGGGTTAGAATTGATCAGG 58.623 45.833 0.00 0.00 0.00 3.86
407 408 5.132144 GGGTTAGGGTTAGAATTGATCAGGA 59.868 44.000 0.00 0.00 0.00 3.86
408 409 6.183361 GGGTTAGGGTTAGAATTGATCAGGAT 60.183 42.308 0.00 0.00 0.00 3.24
409 410 6.937465 GGTTAGGGTTAGAATTGATCAGGATC 59.063 42.308 2.30 2.30 38.29 3.36
410 411 7.420214 GGTTAGGGTTAGAATTGATCAGGATCA 60.420 40.741 7.86 7.86 45.30 2.92
421 422 5.604758 TGATCAGGATCAAAGAGTACAGG 57.395 43.478 9.43 0.00 44.14 4.00
422 423 4.406972 TGATCAGGATCAAAGAGTACAGGG 59.593 45.833 9.43 0.00 44.14 4.45
423 424 3.791320 TCAGGATCAAAGAGTACAGGGT 58.209 45.455 0.00 0.00 0.00 4.34
424 425 4.942944 TCAGGATCAAAGAGTACAGGGTA 58.057 43.478 0.00 0.00 0.00 3.69
425 426 5.529289 TCAGGATCAAAGAGTACAGGGTAT 58.471 41.667 0.00 0.00 0.00 2.73
426 427 5.598830 TCAGGATCAAAGAGTACAGGGTATC 59.401 44.000 0.00 0.00 0.00 2.24
427 428 4.585162 AGGATCAAAGAGTACAGGGTATCG 59.415 45.833 0.00 0.00 0.00 2.92
428 429 4.583489 GGATCAAAGAGTACAGGGTATCGA 59.417 45.833 0.00 0.00 0.00 3.59
429 430 5.244178 GGATCAAAGAGTACAGGGTATCGAT 59.756 44.000 2.16 2.16 0.00 3.59
430 431 6.239345 GGATCAAAGAGTACAGGGTATCGATT 60.239 42.308 1.71 0.00 0.00 3.34
431 432 6.540438 TCAAAGAGTACAGGGTATCGATTT 57.460 37.500 1.71 0.00 0.00 2.17
432 433 6.570692 TCAAAGAGTACAGGGTATCGATTTC 58.429 40.000 1.71 0.00 0.00 2.17
433 434 6.153851 TCAAAGAGTACAGGGTATCGATTTCA 59.846 38.462 1.71 0.00 0.00 2.69
434 435 5.776173 AGAGTACAGGGTATCGATTTCAG 57.224 43.478 1.71 0.00 0.00 3.02
435 436 5.446860 AGAGTACAGGGTATCGATTTCAGA 58.553 41.667 1.71 0.00 0.00 3.27
436 437 5.892119 AGAGTACAGGGTATCGATTTCAGAA 59.108 40.000 1.71 0.00 0.00 3.02
437 438 6.380274 AGAGTACAGGGTATCGATTTCAGAAA 59.620 38.462 1.71 0.00 0.00 2.52
438 439 7.070074 AGAGTACAGGGTATCGATTTCAGAAAT 59.930 37.037 8.20 8.20 0.00 2.17
439 440 7.565680 AGTACAGGGTATCGATTTCAGAAATT 58.434 34.615 9.84 0.00 0.00 1.82
440 441 6.927294 ACAGGGTATCGATTTCAGAAATTC 57.073 37.500 9.84 3.19 0.00 2.17
441 442 6.414732 ACAGGGTATCGATTTCAGAAATTCA 58.585 36.000 9.84 0.55 0.00 2.57
442 443 6.884295 ACAGGGTATCGATTTCAGAAATTCAA 59.116 34.615 9.84 0.00 0.00 2.69
443 444 7.393234 ACAGGGTATCGATTTCAGAAATTCAAA 59.607 33.333 9.84 0.00 0.00 2.69
444 445 7.912250 CAGGGTATCGATTTCAGAAATTCAAAG 59.088 37.037 9.84 1.09 0.00 2.77
445 446 7.829211 AGGGTATCGATTTCAGAAATTCAAAGA 59.171 33.333 9.84 5.83 0.00 2.52
446 447 8.624776 GGGTATCGATTTCAGAAATTCAAAGAT 58.375 33.333 9.84 11.41 0.00 2.40
447 448 9.443283 GGTATCGATTTCAGAAATTCAAAGATG 57.557 33.333 9.84 0.00 0.00 2.90
464 465 9.624697 TTCAAAGATGAAGATTTAATTCCAACG 57.375 29.630 0.00 0.00 40.59 4.10
465 466 9.008965 TCAAAGATGAAGATTTAATTCCAACGA 57.991 29.630 0.00 0.00 30.99 3.85
466 467 9.282247 CAAAGATGAAGATTTAATTCCAACGAG 57.718 33.333 0.00 0.00 0.00 4.18
467 468 7.559590 AGATGAAGATTTAATTCCAACGAGG 57.440 36.000 0.00 0.00 39.47 4.63
468 469 5.560966 TGAAGATTTAATTCCAACGAGGC 57.439 39.130 0.00 0.00 37.29 4.70
469 470 4.094294 TGAAGATTTAATTCCAACGAGGCG 59.906 41.667 0.00 0.00 37.29 5.52
470 471 3.606687 AGATTTAATTCCAACGAGGCGT 58.393 40.909 0.00 0.00 43.97 5.68
471 472 4.761975 AGATTTAATTCCAACGAGGCGTA 58.238 39.130 0.00 0.00 39.99 4.42
472 473 4.569564 AGATTTAATTCCAACGAGGCGTAC 59.430 41.667 0.00 0.00 39.99 3.67
473 474 1.912001 TAATTCCAACGAGGCGTACG 58.088 50.000 11.84 11.84 39.99 3.67
474 475 0.244450 AATTCCAACGAGGCGTACGA 59.756 50.000 21.65 0.00 39.99 3.43
475 476 0.179145 ATTCCAACGAGGCGTACGAG 60.179 55.000 21.65 9.11 39.99 4.18
476 477 1.518056 TTCCAACGAGGCGTACGAGT 61.518 55.000 21.65 9.78 39.99 4.18
477 478 1.080974 CCAACGAGGCGTACGAGTT 60.081 57.895 21.65 15.17 39.99 3.01
478 479 0.665369 CCAACGAGGCGTACGAGTTT 60.665 55.000 21.65 0.00 39.99 2.66
479 480 1.401409 CCAACGAGGCGTACGAGTTTA 60.401 52.381 21.65 0.00 39.99 2.01
480 481 2.318578 CAACGAGGCGTACGAGTTTAA 58.681 47.619 21.65 0.00 39.99 1.52
481 482 2.253392 ACGAGGCGTACGAGTTTAAG 57.747 50.000 21.65 5.26 38.73 1.85
482 483 1.135575 ACGAGGCGTACGAGTTTAAGG 60.136 52.381 21.65 1.39 38.73 2.69
483 484 1.135575 CGAGGCGTACGAGTTTAAGGT 60.136 52.381 21.65 0.00 0.00 3.50
484 485 2.669391 CGAGGCGTACGAGTTTAAGGTT 60.669 50.000 21.65 0.00 0.00 3.50
485 486 3.320626 GAGGCGTACGAGTTTAAGGTTT 58.679 45.455 21.65 0.00 0.00 3.27
486 487 4.485163 GAGGCGTACGAGTTTAAGGTTTA 58.515 43.478 21.65 0.00 0.00 2.01
487 488 5.077134 AGGCGTACGAGTTTAAGGTTTAT 57.923 39.130 21.65 0.00 0.00 1.40
488 489 5.482006 AGGCGTACGAGTTTAAGGTTTATT 58.518 37.500 21.65 0.00 0.00 1.40
489 490 5.934043 AGGCGTACGAGTTTAAGGTTTATTT 59.066 36.000 21.65 0.00 0.00 1.40
490 491 6.091305 AGGCGTACGAGTTTAAGGTTTATTTC 59.909 38.462 21.65 0.00 0.00 2.17
491 492 6.128580 GGCGTACGAGTTTAAGGTTTATTTCA 60.129 38.462 21.65 0.00 0.00 2.69
492 493 6.952083 GCGTACGAGTTTAAGGTTTATTTCAG 59.048 38.462 21.65 0.00 0.00 3.02
493 494 7.148755 GCGTACGAGTTTAAGGTTTATTTCAGA 60.149 37.037 21.65 0.00 0.00 3.27
494 495 8.158445 CGTACGAGTTTAAGGTTTATTTCAGAC 58.842 37.037 10.44 0.00 0.00 3.51
495 496 9.201127 GTACGAGTTTAAGGTTTATTTCAGACT 57.799 33.333 0.00 0.00 0.00 3.24
496 497 8.672823 ACGAGTTTAAGGTTTATTTCAGACTT 57.327 30.769 0.00 0.00 0.00 3.01
497 498 8.771766 ACGAGTTTAAGGTTTATTTCAGACTTC 58.228 33.333 0.00 0.00 0.00 3.01
498 499 8.770828 CGAGTTTAAGGTTTATTTCAGACTTCA 58.229 33.333 0.00 0.00 0.00 3.02
499 500 9.880064 GAGTTTAAGGTTTATTTCAGACTTCAC 57.120 33.333 0.00 0.00 0.00 3.18
500 501 9.628500 AGTTTAAGGTTTATTTCAGACTTCACT 57.372 29.630 0.00 0.00 0.00 3.41
544 545 4.148825 CGTGCCTCCTTCCTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
545 546 4.475135 GTGCCTCCTTCCTCCCGC 62.475 72.222 0.00 0.00 0.00 6.13
547 548 4.168291 GCCTCCTTCCTCCCGCAG 62.168 72.222 0.00 0.00 0.00 5.18
549 550 4.168291 CTCCTTCCTCCCGCAGCC 62.168 72.222 0.00 0.00 0.00 4.85
566 567 4.820744 CCCCCAACCGGCTGGATG 62.821 72.222 25.83 17.73 38.96 3.51
568 569 4.431131 CCCAACCGGCTGGATGCT 62.431 66.667 25.83 0.00 38.96 3.79
569 570 2.825836 CCAACCGGCTGGATGCTC 60.826 66.667 19.69 0.00 38.96 4.26
570 571 3.197790 CAACCGGCTGGATGCTCG 61.198 66.667 21.41 0.00 42.39 5.03
571 572 3.390521 AACCGGCTGGATGCTCGA 61.391 61.111 21.41 0.00 42.39 4.04
572 573 3.376935 AACCGGCTGGATGCTCGAG 62.377 63.158 21.41 8.45 42.39 4.04
576 577 2.110627 GCTGGATGCTCGAGCCAT 59.889 61.111 33.23 24.93 41.54 4.40
577 578 1.525535 GCTGGATGCTCGAGCCATT 60.526 57.895 33.23 18.74 41.54 3.16
578 579 1.505477 GCTGGATGCTCGAGCCATTC 61.505 60.000 33.23 24.88 41.54 2.67
587 588 3.369381 CGAGCCATTCGTTCCATCT 57.631 52.632 0.00 0.00 44.27 2.90
588 589 1.656652 CGAGCCATTCGTTCCATCTT 58.343 50.000 0.00 0.00 44.27 2.40
589 590 1.328680 CGAGCCATTCGTTCCATCTTG 59.671 52.381 0.00 0.00 44.27 3.02
590 591 1.672881 GAGCCATTCGTTCCATCTTGG 59.327 52.381 0.00 0.00 39.43 3.61
591 592 1.004745 AGCCATTCGTTCCATCTTGGT 59.995 47.619 0.00 0.00 39.03 3.67
592 593 1.818674 GCCATTCGTTCCATCTTGGTT 59.181 47.619 0.00 0.00 39.03 3.67
593 594 2.415893 GCCATTCGTTCCATCTTGGTTG 60.416 50.000 0.00 0.00 39.03 3.77
594 595 2.164219 CCATTCGTTCCATCTTGGTTGG 59.836 50.000 0.00 0.00 39.03 3.77
595 596 1.243902 TTCGTTCCATCTTGGTTGGC 58.756 50.000 0.00 0.00 39.03 4.52
596 597 0.608035 TCGTTCCATCTTGGTTGGCC 60.608 55.000 0.00 0.00 39.03 5.36
597 598 1.595093 CGTTCCATCTTGGTTGGCCC 61.595 60.000 0.00 0.00 39.03 5.80
598 599 1.078347 TTCCATCTTGGTTGGCCCC 59.922 57.895 0.00 0.00 39.03 5.80
599 600 1.734420 TTCCATCTTGGTTGGCCCCA 61.734 55.000 0.00 0.00 39.03 4.96
600 601 1.002017 CCATCTTGGTTGGCCCCAT 59.998 57.895 0.00 0.00 33.60 4.00
601 602 1.332144 CCATCTTGGTTGGCCCCATG 61.332 60.000 0.00 3.76 33.60 3.66
602 603 1.002017 ATCTTGGTTGGCCCCATGG 59.998 57.895 4.14 4.14 33.60 3.66
612 613 3.016971 CCCCATGGCCCAGTGAGA 61.017 66.667 6.09 0.00 0.00 3.27
613 614 2.593978 CCCATGGCCCAGTGAGAG 59.406 66.667 6.09 0.00 0.00 3.20
614 615 2.593978 CCATGGCCCAGTGAGAGG 59.406 66.667 0.00 0.00 0.00 3.69
615 616 2.304056 CCATGGCCCAGTGAGAGGT 61.304 63.158 0.00 0.00 0.00 3.85
616 617 1.222936 CATGGCCCAGTGAGAGGTC 59.777 63.158 0.00 0.00 0.00 3.85
617 618 1.081833 ATGGCCCAGTGAGAGGTCT 59.918 57.895 0.00 0.00 0.00 3.85
618 619 0.339859 ATGGCCCAGTGAGAGGTCTA 59.660 55.000 0.00 0.00 0.00 2.59
619 620 0.324738 TGGCCCAGTGAGAGGTCTAG 60.325 60.000 0.00 0.00 0.00 2.43
620 621 1.045911 GGCCCAGTGAGAGGTCTAGG 61.046 65.000 0.00 0.00 0.00 3.02
621 622 1.681486 GCCCAGTGAGAGGTCTAGGC 61.681 65.000 0.00 0.00 0.00 3.93
821 1143 2.445654 CTCCTCCCTGGGCTCTCC 60.446 72.222 8.22 0.00 36.20 3.71
1536 1862 2.066999 GCTCCCCTTCACCTCCGAT 61.067 63.158 0.00 0.00 0.00 4.18
1539 1865 0.031111 TCCCCTTCACCTCCGATCAT 60.031 55.000 0.00 0.00 0.00 2.45
1653 1979 2.554462 CGACTACATCTGGATCCACGAT 59.446 50.000 11.44 14.74 0.00 3.73
2184 2510 3.916184 CCAAGGGGTGGTAGTGGT 58.084 61.111 0.00 0.00 43.20 4.16
2268 2594 2.568425 GCGGTCGGGGTATAGTCCC 61.568 68.421 1.77 1.77 46.31 4.46
2574 2900 6.145048 CCATTGCTTTGTCAGAGAATGAAAAC 59.855 38.462 12.83 0.00 40.43 2.43
3120 3447 3.875134 ACTTTCACTGGTACTTGTTTCCG 59.125 43.478 0.00 0.00 0.00 4.30
3320 3649 5.456921 ACAGGATCATACTTCCATTGGTT 57.543 39.130 1.86 0.00 35.59 3.67
3354 3683 7.455891 ACAGCAGATATCAATACATCATTCCA 58.544 34.615 5.32 0.00 0.00 3.53
3464 3793 4.275196 CCACATCAACATCATCCAGATCAC 59.725 45.833 0.00 0.00 33.72 3.06
3492 3821 4.654724 AGGGGAGCCTACAAATACTAAGAC 59.345 45.833 0.00 0.00 0.00 3.01
3603 3932 4.080863 ACAAAATGAGAGGCTGTACCCTAG 60.081 45.833 0.00 0.00 40.58 3.02
3792 4121 0.481128 GGGAAACAGTGGGGGAGAAA 59.519 55.000 0.00 0.00 0.00 2.52
3805 4134 3.610911 GGGGAGAAACCTACTGTCAATG 58.389 50.000 0.00 0.00 38.98 2.82
3806 4135 3.610911 GGGAGAAACCTACTGTCAATGG 58.389 50.000 0.00 0.00 38.98 3.16
4024 4353 3.869912 GCAAGTCTCATAGCCCAGTCAAA 60.870 47.826 0.00 0.00 0.00 2.69
4034 4363 3.951663 AGCCCAGTCAAACAGTAATACC 58.048 45.455 0.00 0.00 0.00 2.73
4146 4475 8.699749 GTTTGTGCCTTGTTTAATGTTATTCTC 58.300 33.333 0.00 0.00 0.00 2.87
4147 4476 7.759489 TGTGCCTTGTTTAATGTTATTCTCT 57.241 32.000 0.00 0.00 0.00 3.10
4202 4531 5.689383 TTCAGTTCTATGGCAAGTTTCAC 57.311 39.130 0.00 0.00 0.00 3.18
5280 5631 0.676151 AGCCAAGTTCAGCTAGCTGC 60.676 55.000 35.21 23.79 43.31 5.25
5424 5776 4.230455 AGATAGAGAAATGACCTGGAGGG 58.770 47.826 0.00 0.00 40.27 4.30
5425 5777 1.589414 AGAGAAATGACCTGGAGGGG 58.411 55.000 0.00 0.00 40.27 4.79
5493 5846 5.517322 AGTAGCAGGTAGTGTATGTAAGC 57.483 43.478 0.00 0.00 0.00 3.09
5580 5933 2.231716 TGCCTACTCCTACTTGCTCA 57.768 50.000 0.00 0.00 0.00 4.26
5618 5971 6.693315 ATGTTTGACCCATATTTTACTCCG 57.307 37.500 0.00 0.00 0.00 4.63
5666 6084 9.360093 CCAACAGACAAAAATTAGTACACAAAA 57.640 29.630 0.00 0.00 0.00 2.44
5707 6125 5.899547 ACCCTCCAGATTTCAAAAAGTTCTT 59.100 36.000 0.00 0.00 0.00 2.52
5750 6169 2.446848 GCTCTGCCTCCCCATAGCA 61.447 63.158 0.00 0.00 35.66 3.49
5785 6216 3.612247 CTACCGGGCTGCTGTGCTT 62.612 63.158 6.32 0.00 0.00 3.91
5860 6304 0.385751 CCAGTGCGATAGATCCACGT 59.614 55.000 0.00 0.00 34.96 4.49
5861 6305 1.607148 CCAGTGCGATAGATCCACGTA 59.393 52.381 0.00 0.00 34.96 3.57
5865 6309 0.596577 GCGATAGATCCACGTAGGCA 59.403 55.000 0.00 0.00 35.78 4.75
5870 6314 4.530857 ATCCACGTAGGCAGGCGC 62.531 66.667 0.00 0.00 37.29 6.53
5919 6363 4.781087 TGAGGAGGATGCATATCATGATCA 59.219 41.667 12.53 4.65 35.05 2.92
5998 6442 8.881743 CATGAGTTAAATCAAGAAGAGGAAGAG 58.118 37.037 9.98 0.00 31.76 2.85
6109 6569 6.817765 TTTTCTTCGAAATGGCAGTTATCT 57.182 33.333 0.00 0.00 0.00 1.98
6137 6600 7.061557 GCATTCATTAAGAAAAGAGTTGCTCAC 59.938 37.037 0.00 0.00 40.22 3.51
6153 6616 3.254657 TGCTCACTTAATTGGGGAAAACG 59.745 43.478 0.00 0.00 0.00 3.60
6193 6656 4.451435 GCTAGTTAATTATGGAGAACCGGC 59.549 45.833 0.00 0.00 39.42 6.13
6194 6657 3.816994 AGTTAATTATGGAGAACCGGCC 58.183 45.455 0.00 0.00 39.42 6.13
6195 6658 3.201266 AGTTAATTATGGAGAACCGGCCA 59.799 43.478 0.00 0.00 39.42 5.36
6196 6659 2.348411 AATTATGGAGAACCGGCCAG 57.652 50.000 0.00 0.00 37.64 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.007644 CTCTGTGCCCGGTGAGCA 62.008 66.667 0.00 0.00 38.08 4.26
10 11 4.767255 CCTCTGTGCCCGGTGAGC 62.767 72.222 0.00 0.00 0.00 4.26
11 12 4.767255 GCCTCTGTGCCCGGTGAG 62.767 72.222 0.00 0.00 0.00 3.51
29 30 3.282374 AATGGAACCCAGCCCCGTC 62.282 63.158 0.00 0.00 36.75 4.79
30 31 3.264845 AATGGAACCCAGCCCCGT 61.265 61.111 0.00 0.00 36.75 5.28
31 32 2.440247 GAATGGAACCCAGCCCCG 60.440 66.667 0.00 0.00 36.75 5.73
32 33 2.042944 GGAATGGAACCCAGCCCC 60.043 66.667 0.00 0.00 36.75 5.80
33 34 0.756815 GATGGAATGGAACCCAGCCC 60.757 60.000 0.00 0.00 36.75 5.19
34 35 2.812664 GATGGAATGGAACCCAGCC 58.187 57.895 0.00 0.00 36.75 4.85
35 36 0.756815 GGGATGGAATGGAACCCAGC 60.757 60.000 0.00 0.00 40.20 4.85
36 37 0.106015 GGGGATGGAATGGAACCCAG 60.106 60.000 0.00 0.00 42.03 4.45
37 38 0.554865 AGGGGATGGAATGGAACCCA 60.555 55.000 0.00 0.00 42.03 4.51
38 39 0.106015 CAGGGGATGGAATGGAACCC 60.106 60.000 0.00 0.00 39.79 4.11
39 40 0.756815 GCAGGGGATGGAATGGAACC 60.757 60.000 0.00 0.00 0.00 3.62
40 41 0.259938 AGCAGGGGATGGAATGGAAC 59.740 55.000 0.00 0.00 0.00 3.62
41 42 1.776667 CTAGCAGGGGATGGAATGGAA 59.223 52.381 0.00 0.00 0.00 3.53
42 43 1.438469 CTAGCAGGGGATGGAATGGA 58.562 55.000 0.00 0.00 0.00 3.41
43 44 0.251077 GCTAGCAGGGGATGGAATGG 60.251 60.000 10.63 0.00 0.00 3.16
44 45 0.251077 GGCTAGCAGGGGATGGAATG 60.251 60.000 18.24 0.00 0.00 2.67
45 46 1.772819 CGGCTAGCAGGGGATGGAAT 61.773 60.000 18.24 0.00 0.00 3.01
46 47 2.443394 CGGCTAGCAGGGGATGGAA 61.443 63.158 18.24 0.00 0.00 3.53
47 48 2.844362 CGGCTAGCAGGGGATGGA 60.844 66.667 18.24 0.00 0.00 3.41
48 49 2.388890 CTTCGGCTAGCAGGGGATGG 62.389 65.000 18.24 1.24 0.00 3.51
49 50 1.070445 CTTCGGCTAGCAGGGGATG 59.930 63.158 18.24 6.46 0.00 3.51
50 51 2.143419 CCTTCGGCTAGCAGGGGAT 61.143 63.158 18.24 0.00 0.00 3.85
51 52 2.764128 CCTTCGGCTAGCAGGGGA 60.764 66.667 18.24 4.99 0.00 4.81
52 53 4.554036 GCCTTCGGCTAGCAGGGG 62.554 72.222 18.24 18.02 46.69 4.79
68 69 0.538287 ACAGGAAGAGGCCACTTTGC 60.538 55.000 17.05 7.06 0.00 3.68
69 70 1.242076 CACAGGAAGAGGCCACTTTG 58.758 55.000 17.05 14.03 0.00 2.77
70 71 0.846693 ACACAGGAAGAGGCCACTTT 59.153 50.000 17.05 1.16 0.00 2.66
71 72 0.846693 AACACAGGAAGAGGCCACTT 59.153 50.000 15.94 15.94 0.00 3.16
72 73 0.846693 AAACACAGGAAGAGGCCACT 59.153 50.000 5.01 0.00 0.00 4.00
73 74 0.954452 CAAACACAGGAAGAGGCCAC 59.046 55.000 5.01 0.00 0.00 5.01
74 75 0.550914 ACAAACACAGGAAGAGGCCA 59.449 50.000 5.01 0.00 0.00 5.36
75 76 2.224548 ACTACAAACACAGGAAGAGGCC 60.225 50.000 0.00 0.00 0.00 5.19
76 77 3.127425 ACTACAAACACAGGAAGAGGC 57.873 47.619 0.00 0.00 0.00 4.70
77 78 5.007724 GTCAAACTACAAACACAGGAAGAGG 59.992 44.000 0.00 0.00 0.00 3.69
78 79 5.817816 AGTCAAACTACAAACACAGGAAGAG 59.182 40.000 0.00 0.00 0.00 2.85
79 80 5.741011 AGTCAAACTACAAACACAGGAAGA 58.259 37.500 0.00 0.00 0.00 2.87
80 81 5.817816 AGAGTCAAACTACAAACACAGGAAG 59.182 40.000 0.00 0.00 0.00 3.46
81 82 5.741011 AGAGTCAAACTACAAACACAGGAA 58.259 37.500 0.00 0.00 0.00 3.36
82 83 5.353394 AGAGTCAAACTACAAACACAGGA 57.647 39.130 0.00 0.00 0.00 3.86
83 84 4.511826 GGAGAGTCAAACTACAAACACAGG 59.488 45.833 0.00 0.00 0.00 4.00
84 85 4.511826 GGGAGAGTCAAACTACAAACACAG 59.488 45.833 0.00 0.00 0.00 3.66
85 86 4.163458 AGGGAGAGTCAAACTACAAACACA 59.837 41.667 0.00 0.00 0.00 3.72
86 87 4.704965 AGGGAGAGTCAAACTACAAACAC 58.295 43.478 0.00 0.00 0.00 3.32
87 88 5.123227 CAAGGGAGAGTCAAACTACAAACA 58.877 41.667 0.00 0.00 0.00 2.83
88 89 5.123936 ACAAGGGAGAGTCAAACTACAAAC 58.876 41.667 0.00 0.00 0.00 2.93
89 90 5.367945 ACAAGGGAGAGTCAAACTACAAA 57.632 39.130 0.00 0.00 0.00 2.83
90 91 5.011738 CCTACAAGGGAGAGTCAAACTACAA 59.988 44.000 0.00 0.00 0.00 2.41
91 92 4.527038 CCTACAAGGGAGAGTCAAACTACA 59.473 45.833 0.00 0.00 0.00 2.74
92 93 4.621038 GCCTACAAGGGAGAGTCAAACTAC 60.621 50.000 0.00 0.00 35.37 2.73
93 94 3.514309 GCCTACAAGGGAGAGTCAAACTA 59.486 47.826 0.00 0.00 35.37 2.24
94 95 2.303311 GCCTACAAGGGAGAGTCAAACT 59.697 50.000 0.00 0.00 35.37 2.66
95 96 2.615747 GGCCTACAAGGGAGAGTCAAAC 60.616 54.545 0.00 0.00 35.37 2.93
96 97 1.628846 GGCCTACAAGGGAGAGTCAAA 59.371 52.381 0.00 0.00 35.37 2.69
97 98 1.203313 AGGCCTACAAGGGAGAGTCAA 60.203 52.381 1.29 0.00 35.37 3.18
98 99 0.413832 AGGCCTACAAGGGAGAGTCA 59.586 55.000 1.29 0.00 35.37 3.41
99 100 1.483004 GAAGGCCTACAAGGGAGAGTC 59.517 57.143 5.16 0.00 35.37 3.36
100 101 1.203313 TGAAGGCCTACAAGGGAGAGT 60.203 52.381 5.16 0.00 35.37 3.24
101 102 1.484240 CTGAAGGCCTACAAGGGAGAG 59.516 57.143 5.16 0.00 35.37 3.20
102 103 1.573108 CTGAAGGCCTACAAGGGAGA 58.427 55.000 5.16 0.00 35.37 3.71
103 104 0.543749 CCTGAAGGCCTACAAGGGAG 59.456 60.000 5.16 0.00 35.37 4.30
104 105 0.118346 TCCTGAAGGCCTACAAGGGA 59.882 55.000 22.08 15.41 35.37 4.20
105 106 1.216990 ATCCTGAAGGCCTACAAGGG 58.783 55.000 22.08 13.71 35.37 3.95
106 107 3.019564 CAAATCCTGAAGGCCTACAAGG 58.980 50.000 18.26 18.26 38.80 3.61
107 108 3.944015 CTCAAATCCTGAAGGCCTACAAG 59.056 47.826 5.16 3.68 32.17 3.16
108 109 3.873801 GCTCAAATCCTGAAGGCCTACAA 60.874 47.826 5.16 0.00 32.17 2.41
109 110 2.356125 GCTCAAATCCTGAAGGCCTACA 60.356 50.000 5.16 0.00 32.17 2.74
110 111 2.092699 AGCTCAAATCCTGAAGGCCTAC 60.093 50.000 5.16 0.00 32.17 3.18
111 112 2.200081 AGCTCAAATCCTGAAGGCCTA 58.800 47.619 5.16 0.00 32.17 3.93
112 113 0.998145 AGCTCAAATCCTGAAGGCCT 59.002 50.000 0.00 0.00 32.17 5.19
113 114 1.844687 AAGCTCAAATCCTGAAGGCC 58.155 50.000 0.00 0.00 32.17 5.19
114 115 3.878778 TCTAAGCTCAAATCCTGAAGGC 58.121 45.455 0.00 0.00 32.17 4.35
115 116 6.434018 CTTTCTAAGCTCAAATCCTGAAGG 57.566 41.667 0.00 0.00 32.17 3.46
130 131 0.247814 CATGGCGCGTGCTTTCTAAG 60.248 55.000 21.89 0.53 42.25 2.18
131 132 0.672091 TCATGGCGCGTGCTTTCTAA 60.672 50.000 21.89 0.31 42.25 2.10
132 133 1.079474 TCATGGCGCGTGCTTTCTA 60.079 52.632 21.89 3.00 42.25 2.10
133 134 2.358615 TCATGGCGCGTGCTTTCT 60.359 55.556 21.89 0.00 42.25 2.52
134 135 1.911293 TTCTCATGGCGCGTGCTTTC 61.911 55.000 21.89 4.70 42.25 2.62
135 136 1.308069 ATTCTCATGGCGCGTGCTTT 61.308 50.000 21.89 5.59 42.25 3.51
136 137 1.709147 GATTCTCATGGCGCGTGCTT 61.709 55.000 21.89 5.99 42.25 3.91
137 138 2.124983 ATTCTCATGGCGCGTGCT 60.125 55.556 21.89 0.00 42.25 4.40
138 139 2.325857 GATTCTCATGGCGCGTGC 59.674 61.111 13.78 13.78 41.71 5.34
139 140 1.091771 AAGGATTCTCATGGCGCGTG 61.092 55.000 8.43 2.71 0.00 5.34
140 141 0.392998 AAAGGATTCTCATGGCGCGT 60.393 50.000 8.43 0.00 0.00 6.01
141 142 0.734889 AAAAGGATTCTCATGGCGCG 59.265 50.000 0.00 0.00 0.00 6.86
142 143 4.574599 AATAAAAGGATTCTCATGGCGC 57.425 40.909 0.00 0.00 0.00 6.53
166 167 9.646522 ACCTACCTAGACCTATAAATCGTTAAA 57.353 33.333 0.00 0.00 0.00 1.52
167 168 9.289782 GACCTACCTAGACCTATAAATCGTTAA 57.710 37.037 0.00 0.00 0.00 2.01
168 169 7.885399 GGACCTACCTAGACCTATAAATCGTTA 59.115 40.741 0.00 0.00 35.41 3.18
169 170 6.718912 GGACCTACCTAGACCTATAAATCGTT 59.281 42.308 0.00 0.00 35.41 3.85
170 171 6.244654 GGACCTACCTAGACCTATAAATCGT 58.755 44.000 0.00 0.00 35.41 3.73
171 172 5.651576 GGGACCTACCTAGACCTATAAATCG 59.348 48.000 0.00 0.00 38.98 3.34
172 173 5.651576 CGGGACCTACCTAGACCTATAAATC 59.348 48.000 0.00 0.00 38.98 2.17
173 174 5.518011 CCGGGACCTACCTAGACCTATAAAT 60.518 48.000 0.00 0.00 38.98 1.40
174 175 4.202609 CCGGGACCTACCTAGACCTATAAA 60.203 50.000 0.00 0.00 38.98 1.40
175 176 3.331889 CCGGGACCTACCTAGACCTATAA 59.668 52.174 0.00 0.00 38.98 0.98
176 177 2.915604 CCGGGACCTACCTAGACCTATA 59.084 54.545 0.00 0.00 38.98 1.31
177 178 1.709679 CCGGGACCTACCTAGACCTAT 59.290 57.143 0.00 0.00 38.98 2.57
178 179 1.143813 CCGGGACCTACCTAGACCTA 58.856 60.000 0.00 0.00 38.98 3.08
179 180 0.923233 ACCGGGACCTACCTAGACCT 60.923 60.000 6.32 0.00 38.98 3.85
180 181 0.032714 AACCGGGACCTACCTAGACC 60.033 60.000 6.32 0.00 38.98 3.85
181 182 2.690497 GTTAACCGGGACCTACCTAGAC 59.310 54.545 6.32 0.00 38.98 2.59
182 183 2.582636 AGTTAACCGGGACCTACCTAGA 59.417 50.000 6.32 0.00 38.98 2.43
183 184 2.954989 GAGTTAACCGGGACCTACCTAG 59.045 54.545 6.32 0.00 38.98 3.02
184 185 2.582636 AGAGTTAACCGGGACCTACCTA 59.417 50.000 6.32 0.00 38.98 3.08
185 186 1.360507 AGAGTTAACCGGGACCTACCT 59.639 52.381 6.32 0.00 38.98 3.08
186 187 1.479730 CAGAGTTAACCGGGACCTACC 59.520 57.143 6.32 0.00 38.08 3.18
187 188 2.174360 ACAGAGTTAACCGGGACCTAC 58.826 52.381 6.32 0.00 0.00 3.18
188 189 2.610438 ACAGAGTTAACCGGGACCTA 57.390 50.000 6.32 0.00 0.00 3.08
189 190 2.610438 TACAGAGTTAACCGGGACCT 57.390 50.000 6.32 0.00 0.00 3.85
190 191 3.068732 GGTATACAGAGTTAACCGGGACC 59.931 52.174 6.32 0.00 0.00 4.46
191 192 4.313277 GGTATACAGAGTTAACCGGGAC 57.687 50.000 6.32 0.90 0.00 4.46
196 197 5.505173 TGCTACGGTATACAGAGTTAACC 57.495 43.478 10.15 0.00 0.00 2.85
197 198 7.816945 TTTTGCTACGGTATACAGAGTTAAC 57.183 36.000 10.15 0.00 0.00 2.01
198 199 7.433131 CGATTTTGCTACGGTATACAGAGTTAA 59.567 37.037 10.15 0.00 0.00 2.01
199 200 6.914215 CGATTTTGCTACGGTATACAGAGTTA 59.086 38.462 10.15 0.00 0.00 2.24
200 201 5.747197 CGATTTTGCTACGGTATACAGAGTT 59.253 40.000 10.15 0.00 0.00 3.01
201 202 5.279384 CGATTTTGCTACGGTATACAGAGT 58.721 41.667 10.15 6.57 0.00 3.24
202 203 4.148348 GCGATTTTGCTACGGTATACAGAG 59.852 45.833 10.15 4.44 0.00 3.35
203 204 4.046462 GCGATTTTGCTACGGTATACAGA 58.954 43.478 10.15 0.00 0.00 3.41
204 205 3.799963 TGCGATTTTGCTACGGTATACAG 59.200 43.478 5.01 2.99 35.36 2.74
205 206 3.783191 TGCGATTTTGCTACGGTATACA 58.217 40.909 5.01 0.00 35.36 2.29
206 207 3.800506 ACTGCGATTTTGCTACGGTATAC 59.199 43.478 0.00 0.00 35.36 1.47
207 208 4.049546 ACTGCGATTTTGCTACGGTATA 57.950 40.909 0.00 0.00 35.36 1.47
208 209 2.901249 ACTGCGATTTTGCTACGGTAT 58.099 42.857 0.00 0.00 35.36 2.73
209 210 2.373540 ACTGCGATTTTGCTACGGTA 57.626 45.000 0.00 0.00 35.36 4.02
210 211 1.997606 GTACTGCGATTTTGCTACGGT 59.002 47.619 0.00 0.00 35.36 4.83
211 212 1.326548 GGTACTGCGATTTTGCTACGG 59.673 52.381 0.00 0.00 35.36 4.02
212 213 2.268298 AGGTACTGCGATTTTGCTACG 58.732 47.619 0.00 0.00 37.18 3.51
213 214 4.260334 GAAGGTACTGCGATTTTGCTAC 57.740 45.455 0.00 0.00 40.86 3.58
224 225 1.079503 CTTTGGAGCGAAGGTACTGC 58.920 55.000 0.00 0.00 41.12 4.40
225 226 2.743636 TCTTTGGAGCGAAGGTACTG 57.256 50.000 0.00 0.00 41.12 2.74
226 227 3.983044 AATCTTTGGAGCGAAGGTACT 57.017 42.857 0.00 0.00 41.12 2.73
227 228 3.426292 GCAAATCTTTGGAGCGAAGGTAC 60.426 47.826 4.93 0.00 40.77 3.34
228 229 2.747446 GCAAATCTTTGGAGCGAAGGTA 59.253 45.455 4.93 0.00 37.16 3.08
229 230 1.541588 GCAAATCTTTGGAGCGAAGGT 59.458 47.619 4.93 0.00 38.93 3.50
230 231 1.541147 TGCAAATCTTTGGAGCGAAGG 59.459 47.619 4.93 0.00 38.57 3.46
231 232 2.995466 TGCAAATCTTTGGAGCGAAG 57.005 45.000 4.93 0.00 38.57 3.79
232 233 3.940209 AATGCAAATCTTTGGAGCGAA 57.060 38.095 4.93 0.00 41.77 4.70
233 234 3.940209 AAATGCAAATCTTTGGAGCGA 57.060 38.095 4.93 0.00 41.77 4.93
234 235 4.240096 AGAAAATGCAAATCTTTGGAGCG 58.760 39.130 4.93 0.00 41.77 5.03
235 236 5.476614 AGAGAAAATGCAAATCTTTGGAGC 58.523 37.500 4.93 0.00 41.77 4.70
236 237 7.958053 AAAGAGAAAATGCAAATCTTTGGAG 57.042 32.000 11.69 0.00 41.77 3.86
237 238 9.480053 CTTAAAGAGAAAATGCAAATCTTTGGA 57.520 29.630 17.83 2.20 42.66 3.53
238 239 8.225777 GCTTAAAGAGAAAATGCAAATCTTTGG 58.774 33.333 17.83 13.45 39.75 3.28
239 240 8.985805 AGCTTAAAGAGAAAATGCAAATCTTTG 58.014 29.630 17.83 0.00 39.75 2.77
241 242 9.852091 CTAGCTTAAAGAGAAAATGCAAATCTT 57.148 29.630 0.00 0.00 0.00 2.40
242 243 7.972832 GCTAGCTTAAAGAGAAAATGCAAATCT 59.027 33.333 7.70 0.00 0.00 2.40
243 244 7.756722 TGCTAGCTTAAAGAGAAAATGCAAATC 59.243 33.333 17.23 0.00 0.00 2.17
244 245 7.605449 TGCTAGCTTAAAGAGAAAATGCAAAT 58.395 30.769 17.23 0.00 0.00 2.32
245 246 6.980593 TGCTAGCTTAAAGAGAAAATGCAAA 58.019 32.000 17.23 0.00 0.00 3.68
246 247 6.573664 TGCTAGCTTAAAGAGAAAATGCAA 57.426 33.333 17.23 0.00 0.00 4.08
247 248 6.764308 ATGCTAGCTTAAAGAGAAAATGCA 57.236 33.333 17.23 0.00 0.00 3.96
248 249 9.573133 TTTTATGCTAGCTTAAAGAGAAAATGC 57.427 29.630 25.78 0.00 30.75 3.56
261 262 9.454859 AGATCTTGTTTAGTTTTATGCTAGCTT 57.545 29.630 17.23 12.56 0.00 3.74
266 267 9.959721 TCCTTAGATCTTGTTTAGTTTTATGCT 57.040 29.630 0.00 0.00 0.00 3.79
271 272 9.286170 GTTCCTCCTTAGATCTTGTTTAGTTTT 57.714 33.333 0.00 0.00 0.00 2.43
272 273 8.437575 TGTTCCTCCTTAGATCTTGTTTAGTTT 58.562 33.333 0.00 0.00 0.00 2.66
273 274 7.974504 TGTTCCTCCTTAGATCTTGTTTAGTT 58.025 34.615 0.00 0.00 0.00 2.24
274 275 7.554959 TGTTCCTCCTTAGATCTTGTTTAGT 57.445 36.000 0.00 0.00 0.00 2.24
275 276 8.260818 TCATGTTCCTCCTTAGATCTTGTTTAG 58.739 37.037 0.00 0.00 0.00 1.85
276 277 8.146053 TCATGTTCCTCCTTAGATCTTGTTTA 57.854 34.615 0.00 0.00 0.00 2.01
277 278 7.020827 TCATGTTCCTCCTTAGATCTTGTTT 57.979 36.000 0.00 0.00 0.00 2.83
278 279 6.627087 TCATGTTCCTCCTTAGATCTTGTT 57.373 37.500 0.00 0.00 0.00 2.83
279 280 6.627087 TTCATGTTCCTCCTTAGATCTTGT 57.373 37.500 0.00 0.00 0.00 3.16
280 281 7.928307 TTTTCATGTTCCTCCTTAGATCTTG 57.072 36.000 0.00 0.00 0.00 3.02
281 282 8.331740 TCATTTTCATGTTCCTCCTTAGATCTT 58.668 33.333 0.00 0.00 0.00 2.40
282 283 7.772757 GTCATTTTCATGTTCCTCCTTAGATCT 59.227 37.037 0.00 0.00 0.00 2.75
283 284 7.554118 TGTCATTTTCATGTTCCTCCTTAGATC 59.446 37.037 0.00 0.00 0.00 2.75
284 285 7.405292 TGTCATTTTCATGTTCCTCCTTAGAT 58.595 34.615 0.00 0.00 0.00 1.98
285 286 6.778821 TGTCATTTTCATGTTCCTCCTTAGA 58.221 36.000 0.00 0.00 0.00 2.10
286 287 6.094603 CCTGTCATTTTCATGTTCCTCCTTAG 59.905 42.308 0.00 0.00 0.00 2.18
287 288 5.945784 CCTGTCATTTTCATGTTCCTCCTTA 59.054 40.000 0.00 0.00 0.00 2.69
288 289 4.768968 CCTGTCATTTTCATGTTCCTCCTT 59.231 41.667 0.00 0.00 0.00 3.36
289 290 4.202609 ACCTGTCATTTTCATGTTCCTCCT 60.203 41.667 0.00 0.00 0.00 3.69
290 291 4.082125 ACCTGTCATTTTCATGTTCCTCC 58.918 43.478 0.00 0.00 0.00 4.30
291 292 4.082571 CCACCTGTCATTTTCATGTTCCTC 60.083 45.833 0.00 0.00 0.00 3.71
292 293 3.828451 CCACCTGTCATTTTCATGTTCCT 59.172 43.478 0.00 0.00 0.00 3.36
293 294 3.056607 CCCACCTGTCATTTTCATGTTCC 60.057 47.826 0.00 0.00 0.00 3.62
294 295 3.056607 CCCCACCTGTCATTTTCATGTTC 60.057 47.826 0.00 0.00 0.00 3.18
295 296 2.899256 CCCCACCTGTCATTTTCATGTT 59.101 45.455 0.00 0.00 0.00 2.71
296 297 2.158325 ACCCCACCTGTCATTTTCATGT 60.158 45.455 0.00 0.00 0.00 3.21
297 298 2.493278 GACCCCACCTGTCATTTTCATG 59.507 50.000 0.00 0.00 32.91 3.07
298 299 2.807676 GACCCCACCTGTCATTTTCAT 58.192 47.619 0.00 0.00 32.91 2.57
299 300 1.544537 CGACCCCACCTGTCATTTTCA 60.545 52.381 0.00 0.00 32.91 2.69
300 301 1.165270 CGACCCCACCTGTCATTTTC 58.835 55.000 0.00 0.00 32.91 2.29
301 302 0.768622 TCGACCCCACCTGTCATTTT 59.231 50.000 0.00 0.00 32.91 1.82
302 303 0.324943 CTCGACCCCACCTGTCATTT 59.675 55.000 0.00 0.00 32.91 2.32
303 304 0.544357 TCTCGACCCCACCTGTCATT 60.544 55.000 0.00 0.00 32.91 2.57
304 305 0.325671 ATCTCGACCCCACCTGTCAT 60.326 55.000 0.00 0.00 32.91 3.06
305 306 1.078528 ATCTCGACCCCACCTGTCA 59.921 57.895 0.00 0.00 32.91 3.58
306 307 1.258445 ACATCTCGACCCCACCTGTC 61.258 60.000 0.00 0.00 0.00 3.51
307 308 1.229209 ACATCTCGACCCCACCTGT 60.229 57.895 0.00 0.00 0.00 4.00
308 309 1.257750 TGACATCTCGACCCCACCTG 61.258 60.000 0.00 0.00 0.00 4.00
309 310 0.972983 CTGACATCTCGACCCCACCT 60.973 60.000 0.00 0.00 0.00 4.00
310 311 1.258445 ACTGACATCTCGACCCCACC 61.258 60.000 0.00 0.00 0.00 4.61
311 312 0.108615 CACTGACATCTCGACCCCAC 60.109 60.000 0.00 0.00 0.00 4.61
312 313 0.251608 TCACTGACATCTCGACCCCA 60.252 55.000 0.00 0.00 0.00 4.96
313 314 0.457851 CTCACTGACATCTCGACCCC 59.542 60.000 0.00 0.00 0.00 4.95
314 315 1.464734 TCTCACTGACATCTCGACCC 58.535 55.000 0.00 0.00 0.00 4.46
315 316 3.791973 ATTCTCACTGACATCTCGACC 57.208 47.619 0.00 0.00 0.00 4.79
316 317 5.240623 AGGATATTCTCACTGACATCTCGAC 59.759 44.000 0.00 0.00 0.00 4.20
317 318 5.380900 AGGATATTCTCACTGACATCTCGA 58.619 41.667 0.00 0.00 0.00 4.04
318 319 5.703978 AGGATATTCTCACTGACATCTCG 57.296 43.478 0.00 0.00 0.00 4.04
319 320 8.347004 TCATAGGATATTCTCACTGACATCTC 57.653 38.462 0.00 0.00 0.00 2.75
320 321 8.898303 ATCATAGGATATTCTCACTGACATCT 57.102 34.615 0.00 0.00 30.03 2.90
321 322 8.196771 GGATCATAGGATATTCTCACTGACATC 58.803 40.741 0.00 0.00 32.67 3.06
322 323 7.900246 AGGATCATAGGATATTCTCACTGACAT 59.100 37.037 0.00 0.00 32.67 3.06
323 324 7.178097 CAGGATCATAGGATATTCTCACTGACA 59.822 40.741 0.00 0.00 32.67 3.58
324 325 7.363705 CCAGGATCATAGGATATTCTCACTGAC 60.364 44.444 0.00 0.00 32.67 3.51
325 326 6.666980 CCAGGATCATAGGATATTCTCACTGA 59.333 42.308 0.00 0.00 32.67 3.41
326 327 6.440010 ACCAGGATCATAGGATATTCTCACTG 59.560 42.308 0.00 0.00 32.67 3.66
327 328 6.569737 ACCAGGATCATAGGATATTCTCACT 58.430 40.000 0.00 0.00 32.67 3.41
328 329 6.405286 CGACCAGGATCATAGGATATTCTCAC 60.405 46.154 0.00 0.00 32.67 3.51
329 330 5.654209 CGACCAGGATCATAGGATATTCTCA 59.346 44.000 0.00 0.00 32.67 3.27
330 331 5.068460 CCGACCAGGATCATAGGATATTCTC 59.932 48.000 0.00 0.00 45.00 2.87
331 332 4.959210 CCGACCAGGATCATAGGATATTCT 59.041 45.833 0.00 0.00 45.00 2.40
332 333 4.100189 CCCGACCAGGATCATAGGATATTC 59.900 50.000 0.00 0.00 45.00 1.75
333 334 4.033709 CCCGACCAGGATCATAGGATATT 58.966 47.826 0.00 0.00 45.00 1.28
334 335 3.272285 TCCCGACCAGGATCATAGGATAT 59.728 47.826 0.00 0.00 45.00 1.63
335 336 2.652857 TCCCGACCAGGATCATAGGATA 59.347 50.000 0.00 0.00 45.00 2.59
336 337 1.433199 TCCCGACCAGGATCATAGGAT 59.567 52.381 0.00 0.00 45.00 3.24
337 338 0.857675 TCCCGACCAGGATCATAGGA 59.142 55.000 0.00 0.00 45.00 2.94
338 339 1.344763 GTTCCCGACCAGGATCATAGG 59.655 57.143 0.00 0.00 45.00 2.57
339 340 1.000163 CGTTCCCGACCAGGATCATAG 60.000 57.143 0.00 0.00 45.00 2.23
340 341 1.037493 CGTTCCCGACCAGGATCATA 58.963 55.000 0.00 0.00 45.00 2.15
341 342 0.686441 TCGTTCCCGACCAGGATCAT 60.686 55.000 0.00 0.00 45.00 2.45
342 343 1.304630 TCGTTCCCGACCAGGATCA 60.305 57.895 0.00 0.00 45.00 2.92
343 344 3.612251 TCGTTCCCGACCAGGATC 58.388 61.111 0.00 0.00 45.00 3.36
351 352 1.076192 AGGAAGAGGTCGTTCCCGA 59.924 57.895 0.00 0.00 44.12 5.14
352 353 1.215647 CAGGAAGAGGTCGTTCCCG 59.784 63.158 0.00 0.00 44.12 5.14
353 354 1.192803 ACCAGGAAGAGGTCGTTCCC 61.193 60.000 0.00 0.00 44.12 3.97
354 355 0.037232 CACCAGGAAGAGGTCGTTCC 60.037 60.000 0.00 0.00 43.49 3.62
355 356 0.670854 GCACCAGGAAGAGGTCGTTC 60.671 60.000 0.00 0.00 37.23 3.95
356 357 1.371558 GCACCAGGAAGAGGTCGTT 59.628 57.895 0.00 0.00 37.23 3.85
357 358 2.932234 CGCACCAGGAAGAGGTCGT 61.932 63.158 0.00 0.00 37.23 4.34
358 359 2.125912 CGCACCAGGAAGAGGTCG 60.126 66.667 0.00 0.00 37.23 4.79
359 360 2.435059 GCGCACCAGGAAGAGGTC 60.435 66.667 0.30 0.00 37.23 3.85
360 361 4.021925 GGCGCACCAGGAAGAGGT 62.022 66.667 10.83 0.00 40.85 3.85
361 362 4.020617 TGGCGCACCAGGAAGAGG 62.021 66.667 10.83 0.00 42.67 3.69
371 372 2.973316 CTAACCCCGTTTGGCGCAC 61.973 63.158 10.83 0.00 39.71 5.34
372 373 2.670251 CTAACCCCGTTTGGCGCA 60.670 61.111 10.83 0.00 39.71 6.09
373 374 3.436924 CCTAACCCCGTTTGGCGC 61.437 66.667 0.00 0.00 39.71 6.53
374 375 2.748647 CCCTAACCCCGTTTGGCG 60.749 66.667 0.17 0.00 37.17 5.69
375 376 0.038021 TAACCCTAACCCCGTTTGGC 59.962 55.000 0.17 0.00 37.17 4.52
376 377 1.629861 TCTAACCCTAACCCCGTTTGG 59.370 52.381 0.00 0.00 37.97 3.28
377 378 3.421919 TTCTAACCCTAACCCCGTTTG 57.578 47.619 0.00 0.00 0.00 2.93
378 379 4.043184 TCAATTCTAACCCTAACCCCGTTT 59.957 41.667 0.00 0.00 0.00 3.60
379 380 3.588396 TCAATTCTAACCCTAACCCCGTT 59.412 43.478 0.00 0.00 0.00 4.44
380 381 3.183801 TCAATTCTAACCCTAACCCCGT 58.816 45.455 0.00 0.00 0.00 5.28
381 382 3.918294 TCAATTCTAACCCTAACCCCG 57.082 47.619 0.00 0.00 0.00 5.73
382 383 5.377478 CTGATCAATTCTAACCCTAACCCC 58.623 45.833 0.00 0.00 0.00 4.95
383 384 5.132144 TCCTGATCAATTCTAACCCTAACCC 59.868 44.000 0.00 0.00 0.00 4.11
384 385 6.248569 TCCTGATCAATTCTAACCCTAACC 57.751 41.667 0.00 0.00 0.00 2.85
385 386 7.509546 TGATCCTGATCAATTCTAACCCTAAC 58.490 38.462 7.36 0.00 44.14 2.34
386 387 7.690454 TGATCCTGATCAATTCTAACCCTAA 57.310 36.000 7.36 0.00 44.14 2.69
399 400 4.406972 CCCTGTACTCTTTGATCCTGATCA 59.593 45.833 5.74 5.74 45.30 2.92
400 401 4.407296 ACCCTGTACTCTTTGATCCTGATC 59.593 45.833 0.06 0.06 38.29 2.92
401 402 4.366267 ACCCTGTACTCTTTGATCCTGAT 58.634 43.478 0.00 0.00 0.00 2.90
402 403 3.791320 ACCCTGTACTCTTTGATCCTGA 58.209 45.455 0.00 0.00 0.00 3.86
403 404 5.508153 CGATACCCTGTACTCTTTGATCCTG 60.508 48.000 0.00 0.00 0.00 3.86
404 405 4.585162 CGATACCCTGTACTCTTTGATCCT 59.415 45.833 0.00 0.00 0.00 3.24
405 406 4.583489 TCGATACCCTGTACTCTTTGATCC 59.417 45.833 0.00 0.00 0.00 3.36
406 407 5.769484 TCGATACCCTGTACTCTTTGATC 57.231 43.478 0.00 0.00 0.00 2.92
407 408 6.732896 AATCGATACCCTGTACTCTTTGAT 57.267 37.500 0.00 0.00 0.00 2.57
408 409 6.153851 TGAAATCGATACCCTGTACTCTTTGA 59.846 38.462 0.00 0.00 0.00 2.69
409 410 6.338146 TGAAATCGATACCCTGTACTCTTTG 58.662 40.000 0.00 0.00 0.00 2.77
410 411 6.380274 TCTGAAATCGATACCCTGTACTCTTT 59.620 38.462 0.00 0.00 0.00 2.52
411 412 5.892119 TCTGAAATCGATACCCTGTACTCTT 59.108 40.000 0.00 0.00 0.00 2.85
412 413 5.446860 TCTGAAATCGATACCCTGTACTCT 58.553 41.667 0.00 0.00 0.00 3.24
413 414 5.769484 TCTGAAATCGATACCCTGTACTC 57.231 43.478 0.00 0.00 0.00 2.59
414 415 6.540438 TTTCTGAAATCGATACCCTGTACT 57.460 37.500 0.00 0.00 0.00 2.73
415 416 7.494625 TGAATTTCTGAAATCGATACCCTGTAC 59.505 37.037 15.43 0.00 0.00 2.90
416 417 7.561251 TGAATTTCTGAAATCGATACCCTGTA 58.439 34.615 15.43 0.00 0.00 2.74
417 418 6.414732 TGAATTTCTGAAATCGATACCCTGT 58.585 36.000 15.43 0.00 0.00 4.00
418 419 6.925610 TGAATTTCTGAAATCGATACCCTG 57.074 37.500 15.43 0.00 0.00 4.45
419 420 7.829211 TCTTTGAATTTCTGAAATCGATACCCT 59.171 33.333 15.43 0.00 0.00 4.34
420 421 7.985476 TCTTTGAATTTCTGAAATCGATACCC 58.015 34.615 15.43 0.00 0.00 3.69
421 422 9.443283 CATCTTTGAATTTCTGAAATCGATACC 57.557 33.333 15.43 0.00 0.00 2.73
424 425 9.784680 CTTCATCTTTGAATTTCTGAAATCGAT 57.215 29.630 15.43 9.81 40.95 3.59
425 426 9.002600 TCTTCATCTTTGAATTTCTGAAATCGA 57.997 29.630 15.43 7.11 40.95 3.59
426 427 9.784680 ATCTTCATCTTTGAATTTCTGAAATCG 57.215 29.630 15.43 3.81 40.95 3.34
438 439 9.624697 CGTTGGAATTAAATCTTCATCTTTGAA 57.375 29.630 0.00 0.00 39.54 2.69
439 440 9.008965 TCGTTGGAATTAAATCTTCATCTTTGA 57.991 29.630 0.00 0.00 0.00 2.69
440 441 9.282247 CTCGTTGGAATTAAATCTTCATCTTTG 57.718 33.333 0.00 0.00 0.00 2.77
441 442 8.462016 CCTCGTTGGAATTAAATCTTCATCTTT 58.538 33.333 0.00 0.00 38.35 2.52
442 443 7.415653 GCCTCGTTGGAATTAAATCTTCATCTT 60.416 37.037 1.63 0.00 38.35 2.40
443 444 6.038714 GCCTCGTTGGAATTAAATCTTCATCT 59.961 38.462 1.63 0.00 38.35 2.90
444 445 6.202226 GCCTCGTTGGAATTAAATCTTCATC 58.798 40.000 1.63 0.00 38.35 2.92
445 446 5.220854 CGCCTCGTTGGAATTAAATCTTCAT 60.221 40.000 1.63 0.00 38.35 2.57
446 447 4.094294 CGCCTCGTTGGAATTAAATCTTCA 59.906 41.667 1.63 0.00 38.35 3.02
447 448 4.094442 ACGCCTCGTTGGAATTAAATCTTC 59.906 41.667 1.63 0.00 36.35 2.87
448 449 4.007659 ACGCCTCGTTGGAATTAAATCTT 58.992 39.130 1.63 0.00 36.35 2.40
449 450 3.606687 ACGCCTCGTTGGAATTAAATCT 58.393 40.909 1.63 0.00 36.35 2.40
450 451 4.549489 CGTACGCCTCGTTGGAATTAAATC 60.549 45.833 0.52 0.00 41.54 2.17
451 452 3.307782 CGTACGCCTCGTTGGAATTAAAT 59.692 43.478 0.52 0.00 41.54 1.40
452 453 2.667481 CGTACGCCTCGTTGGAATTAAA 59.333 45.455 0.52 0.00 41.54 1.52
453 454 2.094803 TCGTACGCCTCGTTGGAATTAA 60.095 45.455 11.24 0.00 41.54 1.40
454 455 1.472082 TCGTACGCCTCGTTGGAATTA 59.528 47.619 11.24 0.00 41.54 1.40
455 456 0.244450 TCGTACGCCTCGTTGGAATT 59.756 50.000 11.24 0.00 41.54 2.17
456 457 0.179145 CTCGTACGCCTCGTTGGAAT 60.179 55.000 11.24 0.00 41.54 3.01
457 458 1.210931 CTCGTACGCCTCGTTGGAA 59.789 57.895 11.24 0.00 41.54 3.53
458 459 1.518056 AACTCGTACGCCTCGTTGGA 61.518 55.000 11.24 0.00 41.54 3.53
459 460 0.665369 AAACTCGTACGCCTCGTTGG 60.665 55.000 11.24 0.00 41.54 3.77
460 461 1.967762 TAAACTCGTACGCCTCGTTG 58.032 50.000 11.24 0.00 41.54 4.10
461 462 2.589014 CTTAAACTCGTACGCCTCGTT 58.411 47.619 11.24 8.17 41.54 3.85
462 463 1.135575 CCTTAAACTCGTACGCCTCGT 60.136 52.381 11.24 1.95 44.35 4.18
463 464 1.135575 ACCTTAAACTCGTACGCCTCG 60.136 52.381 11.24 1.29 0.00 4.63
464 465 2.643933 ACCTTAAACTCGTACGCCTC 57.356 50.000 11.24 0.00 0.00 4.70
465 466 3.391506 AAACCTTAAACTCGTACGCCT 57.608 42.857 11.24 0.00 0.00 5.52
466 467 5.784750 AATAAACCTTAAACTCGTACGCC 57.215 39.130 11.24 0.00 0.00 5.68
467 468 6.820459 TGAAATAAACCTTAAACTCGTACGC 58.180 36.000 11.24 0.00 0.00 4.42
468 469 8.158445 GTCTGAAATAAACCTTAAACTCGTACG 58.842 37.037 9.53 9.53 0.00 3.67
469 470 9.201127 AGTCTGAAATAAACCTTAAACTCGTAC 57.799 33.333 0.00 0.00 0.00 3.67
470 471 9.768662 AAGTCTGAAATAAACCTTAAACTCGTA 57.231 29.630 0.00 0.00 0.00 3.43
471 472 8.672823 AAGTCTGAAATAAACCTTAAACTCGT 57.327 30.769 0.00 0.00 0.00 4.18
472 473 8.770828 TGAAGTCTGAAATAAACCTTAAACTCG 58.229 33.333 0.00 0.00 0.00 4.18
473 474 9.880064 GTGAAGTCTGAAATAAACCTTAAACTC 57.120 33.333 0.00 0.00 0.00 3.01
474 475 9.628500 AGTGAAGTCTGAAATAAACCTTAAACT 57.372 29.630 0.00 0.00 0.00 2.66
475 476 9.880064 GAGTGAAGTCTGAAATAAACCTTAAAC 57.120 33.333 0.00 0.00 0.00 2.01
476 477 9.847224 AGAGTGAAGTCTGAAATAAACCTTAAA 57.153 29.630 0.00 0.00 0.00 1.52
477 478 9.273016 CAGAGTGAAGTCTGAAATAAACCTTAA 57.727 33.333 9.17 0.00 46.02 1.85
478 479 8.429641 ACAGAGTGAAGTCTGAAATAAACCTTA 58.570 33.333 19.58 0.00 46.02 2.69
479 480 7.283329 ACAGAGTGAAGTCTGAAATAAACCTT 58.717 34.615 19.58 0.00 46.02 3.50
480 481 6.831976 ACAGAGTGAAGTCTGAAATAAACCT 58.168 36.000 19.58 0.00 46.02 3.50
481 482 7.497925 AACAGAGTGAAGTCTGAAATAAACC 57.502 36.000 19.58 0.00 46.02 3.27
482 483 8.612619 TGAAACAGAGTGAAGTCTGAAATAAAC 58.387 33.333 19.58 6.34 46.02 2.01
483 484 8.731275 TGAAACAGAGTGAAGTCTGAAATAAA 57.269 30.769 19.58 0.68 46.02 1.40
484 485 7.041780 GCTGAAACAGAGTGAAGTCTGAAATAA 60.042 37.037 19.58 3.25 46.02 1.40
485 486 6.425114 GCTGAAACAGAGTGAAGTCTGAAATA 59.575 38.462 19.58 5.01 46.02 1.40
486 487 5.238214 GCTGAAACAGAGTGAAGTCTGAAAT 59.762 40.000 19.58 6.90 46.02 2.17
487 488 4.572389 GCTGAAACAGAGTGAAGTCTGAAA 59.428 41.667 19.58 3.82 46.02 2.69
488 489 4.122776 GCTGAAACAGAGTGAAGTCTGAA 58.877 43.478 19.58 4.10 46.02 3.02
489 490 3.386078 AGCTGAAACAGAGTGAAGTCTGA 59.614 43.478 19.58 0.00 46.02 3.27
491 492 4.414337 AAGCTGAAACAGAGTGAAGTCT 57.586 40.909 2.81 0.00 32.44 3.24
492 493 5.163713 ACAAAAGCTGAAACAGAGTGAAGTC 60.164 40.000 2.81 0.00 32.44 3.01
493 494 4.702131 ACAAAAGCTGAAACAGAGTGAAGT 59.298 37.500 2.81 0.00 32.44 3.01
494 495 5.240713 ACAAAAGCTGAAACAGAGTGAAG 57.759 39.130 2.81 0.00 32.44 3.02
495 496 4.096382 GGACAAAAGCTGAAACAGAGTGAA 59.904 41.667 2.81 0.00 32.44 3.18
496 497 3.627577 GGACAAAAGCTGAAACAGAGTGA 59.372 43.478 2.81 0.00 32.44 3.41
497 498 3.546815 CGGACAAAAGCTGAAACAGAGTG 60.547 47.826 2.81 0.00 32.44 3.51
498 499 2.614057 CGGACAAAAGCTGAAACAGAGT 59.386 45.455 2.81 0.00 32.44 3.24
499 500 2.603173 GCGGACAAAAGCTGAAACAGAG 60.603 50.000 2.81 0.00 32.44 3.35
500 501 1.333619 GCGGACAAAAGCTGAAACAGA 59.666 47.619 2.81 0.00 32.44 3.41
549 550 4.820744 CATCCAGCCGGTTGGGGG 62.821 72.222 33.91 22.90 38.81 5.40
560 561 2.614581 GAATGGCTCGAGCATCCAG 58.385 57.895 36.27 0.00 44.36 3.86
561 562 4.863707 GAATGGCTCGAGCATCCA 57.136 55.556 36.27 25.70 44.36 3.41
569 570 3.880592 CCAAGATGGAACGAATGGCTCG 61.881 54.545 0.00 0.00 46.86 5.03
570 571 1.672881 CCAAGATGGAACGAATGGCTC 59.327 52.381 0.00 0.00 40.96 4.70
571 572 1.004745 ACCAAGATGGAACGAATGGCT 59.995 47.619 2.85 0.00 40.96 4.75
572 573 1.463674 ACCAAGATGGAACGAATGGC 58.536 50.000 2.85 0.00 40.96 4.40
573 574 2.164219 CCAACCAAGATGGAACGAATGG 59.836 50.000 2.85 0.00 40.96 3.16
574 575 2.415893 GCCAACCAAGATGGAACGAATG 60.416 50.000 2.85 0.00 40.96 2.67
575 576 1.818674 GCCAACCAAGATGGAACGAAT 59.181 47.619 2.85 0.00 40.96 3.34
576 577 1.243902 GCCAACCAAGATGGAACGAA 58.756 50.000 2.85 0.00 40.96 3.85
577 578 0.608035 GGCCAACCAAGATGGAACGA 60.608 55.000 0.00 0.00 40.96 3.85
578 579 1.595093 GGGCCAACCAAGATGGAACG 61.595 60.000 4.39 0.00 40.96 3.95
579 580 1.257750 GGGGCCAACCAAGATGGAAC 61.258 60.000 4.39 0.00 40.96 3.62
580 581 1.078347 GGGGCCAACCAAGATGGAA 59.922 57.895 4.39 0.00 40.96 3.53
581 582 1.517538 ATGGGGCCAACCAAGATGGA 61.518 55.000 4.39 0.00 45.13 3.41
582 583 1.002017 ATGGGGCCAACCAAGATGG 59.998 57.895 4.39 0.00 45.13 3.51
583 584 1.332144 CCATGGGGCCAACCAAGATG 61.332 60.000 4.39 0.00 45.13 2.90
584 585 1.002017 CCATGGGGCCAACCAAGAT 59.998 57.895 4.39 0.00 45.13 2.40
585 586 2.444696 CCATGGGGCCAACCAAGA 59.555 61.111 4.39 0.00 45.13 3.02
595 596 3.016971 TCTCACTGGGCCATGGGG 61.017 66.667 15.13 1.61 37.18 4.96
596 597 2.593978 CTCTCACTGGGCCATGGG 59.406 66.667 15.13 8.14 0.00 4.00
597 598 2.262774 GACCTCTCACTGGGCCATGG 62.263 65.000 6.72 7.63 0.00 3.66
598 599 1.222936 GACCTCTCACTGGGCCATG 59.777 63.158 6.72 8.19 0.00 3.66
599 600 0.339859 TAGACCTCTCACTGGGCCAT 59.660 55.000 6.72 0.00 31.51 4.40
600 601 0.324738 CTAGACCTCTCACTGGGCCA 60.325 60.000 5.85 5.85 31.51 5.36
601 602 1.045911 CCTAGACCTCTCACTGGGCC 61.046 65.000 0.00 0.00 31.51 5.80
602 603 2.510664 CCTAGACCTCTCACTGGGC 58.489 63.158 0.00 0.00 0.00 5.36
603 604 1.045911 GGCCTAGACCTCTCACTGGG 61.046 65.000 0.00 0.00 37.73 4.45
604 605 0.032615 AGGCCTAGACCTCTCACTGG 60.033 60.000 1.29 0.00 33.62 4.00
605 606 3.605946 AGGCCTAGACCTCTCACTG 57.394 57.895 1.29 0.00 33.62 3.66
612 613 0.929734 TACCAGGGAGGCCTAGACCT 60.930 60.000 4.42 11.74 45.04 3.85
613 614 0.470268 CTACCAGGGAGGCCTAGACC 60.470 65.000 4.42 9.16 43.14 3.85
614 615 0.470268 CCTACCAGGGAGGCCTAGAC 60.470 65.000 4.08 0.00 43.14 2.59
615 616 1.939113 CCTACCAGGGAGGCCTAGA 59.061 63.158 4.08 0.00 43.14 2.43
616 617 4.629442 CCTACCAGGGAGGCCTAG 57.371 66.667 4.08 0.00 43.14 3.02
621 622 1.709994 GGGAATGCCTACCAGGGAGG 61.710 65.000 14.65 14.65 39.79 4.30
651 965 2.190488 GAAGGCCTACACCAGCAGCT 62.190 60.000 5.16 0.00 0.00 4.24
652 966 1.746991 GAAGGCCTACACCAGCAGC 60.747 63.158 5.16 0.00 0.00 5.25
654 968 1.845664 TGGAAGGCCTACACCAGCA 60.846 57.895 18.39 1.31 34.31 4.41
655 969 1.377333 GTGGAAGGCCTACACCAGC 60.377 63.158 23.39 15.32 32.89 4.85
657 971 1.823169 GACGTGGAAGGCCTACACCA 61.823 60.000 26.14 22.45 34.31 4.17
658 972 1.079336 GACGTGGAAGGCCTACACC 60.079 63.158 26.14 20.56 34.31 4.16
659 973 1.445582 CGACGTGGAAGGCCTACAC 60.446 63.158 23.79 23.79 34.31 2.90
660 974 2.967397 CGACGTGGAAGGCCTACA 59.033 61.111 5.16 5.67 34.31 2.74
661 975 2.508663 GCGACGTGGAAGGCCTAC 60.509 66.667 5.16 2.29 34.31 3.18
821 1143 3.077556 CAGGAGGTGACGAGGGGG 61.078 72.222 0.00 0.00 0.00 5.40
865 1191 1.822613 CGCCTGAGCCCTACGACTA 60.823 63.158 0.00 0.00 34.57 2.59
866 1192 3.141488 CGCCTGAGCCCTACGACT 61.141 66.667 0.00 0.00 34.57 4.18
867 1193 4.208686 CCGCCTGAGCCCTACGAC 62.209 72.222 0.00 0.00 34.57 4.34
1281 1607 0.616111 AGTCCTCGTCCCAGCAGAAT 60.616 55.000 0.00 0.00 0.00 2.40
1497 1823 1.153549 GTAGTGGAAGAGCGGCCAG 60.154 63.158 2.24 0.00 34.22 4.85
1536 1862 3.700970 TCGAAGCGGCCACCATGA 61.701 61.111 2.24 0.00 0.00 3.07
2184 2510 4.258543 CCTTTAATCCTTGCACGTCCTTA 58.741 43.478 0.00 0.00 0.00 2.69
2268 2594 4.124851 AGTCCTATTAACAAGCTCCACG 57.875 45.455 0.00 0.00 0.00 4.94
2574 2900 0.526954 GCTTCTCATGGCGCAATTGG 60.527 55.000 10.83 0.00 0.00 3.16
3081 3408 2.029838 AGTATCAGAAGGCGCAAAGG 57.970 50.000 10.83 0.00 0.00 3.11
3120 3447 7.650834 TTTGCATTTGTTTATACTTGAAGCC 57.349 32.000 0.00 0.00 0.00 4.35
3320 3649 3.114606 TGATATCTGCTGTCCCCAGAAA 58.885 45.455 3.98 0.00 42.12 2.52
3425 3754 8.156165 TGTTGATGTGGCAATATCTGATATACA 58.844 33.333 10.42 10.99 0.00 2.29
3792 4121 5.519808 TCAGTAGATCCATTGACAGTAGGT 58.480 41.667 0.00 0.00 0.00 3.08
3805 4134 6.183360 TGCAATGGTAAGTACTCAGTAGATCC 60.183 42.308 0.00 0.00 0.00 3.36
3806 4135 6.806751 TGCAATGGTAAGTACTCAGTAGATC 58.193 40.000 0.00 0.00 0.00 2.75
4024 4353 7.224297 AGTTCAACATTCACTGGTATTACTGT 58.776 34.615 0.00 0.00 0.00 3.55
4034 4363 9.102757 AGCTGTTATATAGTTCAACATTCACTG 57.897 33.333 0.00 0.00 32.14 3.66
4146 4475 9.889128 ATTCAAATTAACCCCATGAATACAAAG 57.111 29.630 0.00 0.00 38.55 2.77
4202 4531 3.937706 CTGACAAGGAATAGCTGTTGAGG 59.062 47.826 0.00 0.00 0.00 3.86
4619 4948 7.582435 AGAAATCACGGTAGATAATATTGCG 57.418 36.000 0.00 0.00 0.00 4.85
5184 5522 1.863267 GACTTCATCATGCCTCCTCG 58.137 55.000 0.00 0.00 0.00 4.63
5531 5884 7.147514 TGGCCCAAATGCTCATCTATTAATTTT 60.148 33.333 0.00 0.00 0.00 1.82
5538 5891 3.537795 ATGGCCCAAATGCTCATCTAT 57.462 42.857 0.00 0.00 0.00 1.98
5618 5971 3.181527 GCGACAAGTAATTTGGTACGGAC 60.182 47.826 0.00 0.00 41.25 4.79
5666 6084 8.336235 TCTGGAGGGTCTGAATGTAAAATTAAT 58.664 33.333 0.00 0.00 0.00 1.40
5781 6212 2.268920 GGATCACGGCCTGAAGCA 59.731 61.111 0.00 0.00 46.50 3.91
5836 6280 1.542030 GGATCTATCGCACTGGATCGT 59.458 52.381 0.00 0.00 34.83 3.73
5919 6363 7.066766 GTGCATCCTCTTCTTGATTTAACTCAT 59.933 37.037 0.00 0.00 0.00 2.90
5998 6442 7.707104 TCCTCTTCTTCTTTTTGACAAATGTC 58.293 34.615 6.60 6.60 44.97 3.06
6018 6462 3.708403 TCAACATGTGCATCTTCCTCT 57.292 42.857 0.00 0.00 0.00 3.69
6019 6463 3.488721 GCATCAACATGTGCATCTTCCTC 60.489 47.826 0.00 0.00 40.94 3.71
6020 6464 2.426024 GCATCAACATGTGCATCTTCCT 59.574 45.455 0.00 0.00 40.94 3.36
6109 6569 7.436118 AGCAACTCTTTTCTTAATGAATGCAA 58.564 30.769 0.00 0.00 35.28 4.08
6137 6600 2.823154 TGCTCCGTTTTCCCCAATTAAG 59.177 45.455 0.00 0.00 0.00 1.85
6172 6635 4.409574 TGGCCGGTTCTCCATAATTAACTA 59.590 41.667 1.90 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.