Multiple sequence alignment - TraesCS5A01G115100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G115100 chr5A 100.000 3741 0 0 1 3741 230452239 230455979 0.000000e+00 6909.0
1 TraesCS5A01G115100 chr5A 82.047 596 103 4 2103 2696 225243112 225243705 4.310000e-139 505.0
2 TraesCS5A01G115100 chr5A 94.495 109 6 0 3329 3437 436100645 436100537 6.430000e-38 169.0
3 TraesCS5A01G115100 chr5A 94.949 99 4 1 1685 1783 7183786 7183689 1.800000e-33 154.0
4 TraesCS5A01G115100 chr5A 93.000 100 6 1 1684 1783 709762374 709762472 1.080000e-30 145.0
5 TraesCS5A01G115100 chr5A 92.929 99 6 1 1685 1783 353573008 353573105 3.890000e-30 143.0
6 TraesCS5A01G115100 chr5A 80.769 130 22 2 1880 2006 225242986 225243115 8.550000e-17 99.0
7 TraesCS5A01G115100 chr5D 95.880 1529 55 6 1809 3331 192538488 192540014 0.000000e+00 2468.0
8 TraesCS5A01G115100 chr5D 92.819 933 51 7 1 930 192536754 192537673 0.000000e+00 1338.0
9 TraesCS5A01G115100 chr5D 98.003 751 10 2 941 1687 192537729 192538478 0.000000e+00 1299.0
10 TraesCS5A01G115100 chr5D 94.771 306 14 2 3435 3739 192540013 192540317 3.380000e-130 475.0
11 TraesCS5A01G115100 chr5D 80.405 592 112 4 2107 2696 201851171 201850582 7.370000e-122 448.0
12 TraesCS5A01G115100 chr5B 95.865 1306 33 6 1838 3122 197193454 197192149 0.000000e+00 2093.0
13 TraesCS5A01G115100 chr5B 96.684 754 19 3 938 1687 197201551 197200800 0.000000e+00 1249.0
14 TraesCS5A01G115100 chr5B 81.681 595 98 5 2103 2696 212635546 212634962 5.620000e-133 484.0
15 TraesCS5A01G115100 chr5B 95.130 308 11 4 3436 3741 197191798 197191493 2.020000e-132 483.0
16 TraesCS5A01G115100 chr5B 93.333 300 20 0 167 466 197204051 197203752 9.530000e-121 444.0
17 TraesCS5A01G115100 chr5B 95.062 243 9 1 703 942 197201825 197201583 2.730000e-101 379.0
18 TraesCS5A01G115100 chr5B 95.853 217 9 0 502 718 197202055 197201839 5.940000e-93 351.0
19 TraesCS5A01G115100 chr5B 90.789 152 13 1 3179 3329 197191951 197191800 6.340000e-48 202.0
20 TraesCS5A01G115100 chr5B 80.769 130 22 2 1880 2006 212635672 212635543 8.550000e-17 99.0
21 TraesCS5A01G115100 chr5B 100.000 34 0 0 461 494 197202114 197202081 3.120000e-06 63.9
22 TraesCS5A01G115100 chr4D 87.500 640 78 2 2103 2741 74159238 74158600 0.000000e+00 737.0
23 TraesCS5A01G115100 chr4B 87.344 640 79 2 2103 2741 106491961 106491323 0.000000e+00 732.0
24 TraesCS5A01G115100 chr4A 86.250 640 86 2 2103 2741 513805335 513805973 0.000000e+00 693.0
25 TraesCS5A01G115100 chr4A 92.105 114 9 0 3326 3439 86810144 86810031 1.080000e-35 161.0
26 TraesCS5A01G115100 chr3A 83.114 533 86 3 1118 1648 651962412 651962942 2.020000e-132 483.0
27 TraesCS5A01G115100 chr3A 81.921 531 96 0 1118 1648 651996516 651997046 2.050000e-122 449.0
28 TraesCS5A01G115100 chr3D 82.331 532 92 2 1118 1648 516671486 516672016 9.470000e-126 460.0
29 TraesCS5A01G115100 chr3D 81.750 537 93 5 1115 1648 516855895 516856429 9.530000e-121 444.0
30 TraesCS5A01G115100 chr3D 92.000 100 7 1 1684 1783 523173362 523173264 5.040000e-29 139.0
31 TraesCS5A01G115100 chr3B 82.331 532 92 2 1118 1648 680732611 680732081 9.470000e-126 460.0
32 TraesCS5A01G115100 chr3B 82.143 532 93 2 1118 1648 680477780 680477250 4.400000e-124 455.0
33 TraesCS5A01G115100 chr3B 81.989 533 92 4 1118 1648 680676742 680676212 2.050000e-122 449.0
34 TraesCS5A01G115100 chr2D 79.133 623 106 14 2099 2702 445060736 445061353 3.480000e-110 409.0
35 TraesCS5A01G115100 chr2A 76.250 480 82 23 2139 2590 430708124 430708599 3.760000e-55 226.0
36 TraesCS5A01G115100 chr2A 94.792 96 4 1 1688 1783 24058745 24058839 8.370000e-32 148.0
37 TraesCS5A01G115100 chr7A 94.595 111 6 0 3327 3437 645027223 645027113 4.970000e-39 172.0
38 TraesCS5A01G115100 chr7A 93.578 109 7 0 3328 3436 48913775 48913667 2.990000e-36 163.0
39 TraesCS5A01G115100 chr1D 94.495 109 6 0 3328 3436 81283721 81283613 6.430000e-38 169.0
40 TraesCS5A01G115100 chr1D 92.241 116 7 2 3322 3436 287969760 287969874 2.990000e-36 163.0
41 TraesCS5A01G115100 chr1D 87.121 132 14 1 1875 2006 360467959 360468087 3.010000e-31 147.0
42 TraesCS5A01G115100 chr6A 94.444 108 6 0 3329 3436 62719343 62719450 2.310000e-37 167.0
43 TraesCS5A01G115100 chr6A 94.444 108 6 0 3330 3437 190598716 190598823 2.310000e-37 167.0
44 TraesCS5A01G115100 chr6A 90.598 117 10 1 1680 1796 595075055 595075170 1.800000e-33 154.0
45 TraesCS5A01G115100 chr6A 89.831 118 10 2 1688 1805 53076303 53076418 2.330000e-32 150.0
46 TraesCS5A01G115100 chr2B 89.147 129 12 2 1677 1804 785224582 785224709 3.870000e-35 159.0
47 TraesCS5A01G115100 chr1A 90.833 120 10 1 3329 3448 466906451 466906333 3.870000e-35 159.0
48 TraesCS5A01G115100 chr1A 84.962 133 15 4 1875 2006 460281710 460281838 3.030000e-26 130.0
49 TraesCS5A01G115100 chr7B 89.256 121 9 3 1684 1802 106336787 106336669 8.370000e-32 148.0
50 TraesCS5A01G115100 chr1B 87.121 132 14 1 1875 2006 482697690 482697818 3.010000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G115100 chr5A 230452239 230455979 3740 False 6909.00 6909 100.00000 1 3741 1 chr5A.!!$F1 3740
1 TraesCS5A01G115100 chr5A 225242986 225243705 719 False 302.00 505 81.40800 1880 2696 2 chr5A.!!$F4 816
2 TraesCS5A01G115100 chr5D 192536754 192540317 3563 False 1395.00 2468 95.36825 1 3739 4 chr5D.!!$F1 3738
3 TraesCS5A01G115100 chr5D 201850582 201851171 589 True 448.00 448 80.40500 2107 2696 1 chr5D.!!$R1 589
4 TraesCS5A01G115100 chr5B 197191493 197193454 1961 True 926.00 2093 93.92800 1838 3741 3 chr5B.!!$R1 1903
5 TraesCS5A01G115100 chr5B 197200800 197204051 3251 True 497.38 1249 96.18640 167 1687 5 chr5B.!!$R2 1520
6 TraesCS5A01G115100 chr5B 212634962 212635672 710 True 291.50 484 81.22500 1880 2696 2 chr5B.!!$R3 816
7 TraesCS5A01G115100 chr4D 74158600 74159238 638 True 737.00 737 87.50000 2103 2741 1 chr4D.!!$R1 638
8 TraesCS5A01G115100 chr4B 106491323 106491961 638 True 732.00 732 87.34400 2103 2741 1 chr4B.!!$R1 638
9 TraesCS5A01G115100 chr4A 513805335 513805973 638 False 693.00 693 86.25000 2103 2741 1 chr4A.!!$F1 638
10 TraesCS5A01G115100 chr3A 651962412 651962942 530 False 483.00 483 83.11400 1118 1648 1 chr3A.!!$F1 530
11 TraesCS5A01G115100 chr3A 651996516 651997046 530 False 449.00 449 81.92100 1118 1648 1 chr3A.!!$F2 530
12 TraesCS5A01G115100 chr3D 516671486 516672016 530 False 460.00 460 82.33100 1118 1648 1 chr3D.!!$F1 530
13 TraesCS5A01G115100 chr3D 516855895 516856429 534 False 444.00 444 81.75000 1115 1648 1 chr3D.!!$F2 533
14 TraesCS5A01G115100 chr3B 680732081 680732611 530 True 460.00 460 82.33100 1118 1648 1 chr3B.!!$R3 530
15 TraesCS5A01G115100 chr3B 680477250 680477780 530 True 455.00 455 82.14300 1118 1648 1 chr3B.!!$R1 530
16 TraesCS5A01G115100 chr3B 680676212 680676742 530 True 449.00 449 81.98900 1118 1648 1 chr3B.!!$R2 530
17 TraesCS5A01G115100 chr2D 445060736 445061353 617 False 409.00 409 79.13300 2099 2702 1 chr2D.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 0.238289 CCACCACGTCATGTTTCAGC 59.762 55.0 0.0 0.0 0.0 4.26 F
908 2608 0.532862 CGCCAAGAACACACCACTCT 60.533 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 3856 1.153549 GCCCTGATCGTGTCCTGAC 60.154 63.158 0.00 0.0 0.0 3.51 R
2756 4527 5.424757 AGCATGCGGTTATAACTAAGTTGA 58.575 37.500 13.01 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.537814 TTCGGCAGTTTCTAGCGGGA 61.538 55.000 0.00 0.00 0.00 5.14
29 30 0.741221 GCAGTTTCTAGCGGGACTGG 60.741 60.000 13.01 0.00 39.80 4.00
37 38 2.504175 TCTAGCGGGACTGGCTTTAAAT 59.496 45.455 0.00 0.00 41.80 1.40
41 42 2.442413 CGGGACTGGCTTTAAATTCCA 58.558 47.619 8.50 8.50 0.00 3.53
43 44 3.447229 CGGGACTGGCTTTAAATTCCATT 59.553 43.478 9.07 4.99 0.00 3.16
70 71 4.016444 GCAGGTCAAATAGGGAATGAACA 58.984 43.478 0.00 0.00 33.19 3.18
72 73 5.127682 GCAGGTCAAATAGGGAATGAACAAT 59.872 40.000 0.00 0.00 33.19 2.71
73 74 6.681368 GCAGGTCAAATAGGGAATGAACAATC 60.681 42.308 0.00 0.00 33.19 2.67
81 82 5.712152 AGGGAATGAACAATCAAACAGTC 57.288 39.130 0.00 0.00 39.49 3.51
92 93 7.775397 ACAATCAAACAGTCCAATTTCTTTG 57.225 32.000 0.00 0.00 34.93 2.77
93 94 7.330262 ACAATCAAACAGTCCAATTTCTTTGT 58.670 30.769 0.00 0.00 33.15 2.83
95 96 6.279513 TCAAACAGTCCAATTTCTTTGTGT 57.720 33.333 0.00 0.00 33.15 3.72
98 99 6.767524 AACAGTCCAATTTCTTTGTGTGTA 57.232 33.333 0.00 0.00 33.15 2.90
103 104 5.531287 GTCCAATTTCTTTGTGTGTAGGTCT 59.469 40.000 0.00 0.00 33.15 3.85
114 115 0.690762 TGTAGGTCTGGTTGGGCTTC 59.309 55.000 0.00 0.00 0.00 3.86
116 117 0.474854 TAGGTCTGGTTGGGCTTCCA 60.475 55.000 0.00 0.00 39.13 3.53
126 127 0.395862 TGGGCTTCCAAAAACGTCCA 60.396 50.000 0.00 0.00 37.67 4.02
130 131 1.333791 GCTTCCAAAAACGTCCAGTCG 60.334 52.381 0.00 0.00 0.00 4.18
134 135 2.352342 TCCAAAAACGTCCAGTCGAAAC 59.648 45.455 0.00 0.00 34.70 2.78
198 199 0.393808 AGCAACCAAATACGGCCGAT 60.394 50.000 35.90 18.27 0.00 4.18
211 212 4.592192 CCGATGTGAGCGGCGGAT 62.592 66.667 9.78 0.00 46.29 4.18
222 223 3.451894 GGCGGATGTTTGGGGCAG 61.452 66.667 0.00 0.00 0.00 4.85
264 265 1.222115 GGTTCACCGCTGACTGACAC 61.222 60.000 0.00 0.00 0.00 3.67
287 288 1.003580 ACATGTTTGACCTCGGAGCAT 59.996 47.619 0.00 0.00 0.00 3.79
360 361 0.238289 CCACCACGTCATGTTTCAGC 59.762 55.000 0.00 0.00 0.00 4.26
441 442 1.203758 TCTTGGCGCACGAGATTCTTA 59.796 47.619 10.83 0.00 34.59 2.10
494 2138 6.316390 GTGACGAGATAAATGATTGGGTCTTT 59.684 38.462 0.00 0.00 0.00 2.52
495 2139 7.494625 GTGACGAGATAAATGATTGGGTCTTTA 59.505 37.037 0.00 0.00 0.00 1.85
496 2140 8.210946 TGACGAGATAAATGATTGGGTCTTTAT 58.789 33.333 0.00 0.00 0.00 1.40
497 2141 8.608844 ACGAGATAAATGATTGGGTCTTTATC 57.391 34.615 0.00 0.00 37.30 1.75
498 2142 8.210946 ACGAGATAAATGATTGGGTCTTTATCA 58.789 33.333 13.38 0.00 38.18 2.15
499 2143 8.715998 CGAGATAAATGATTGGGTCTTTATCAG 58.284 37.037 13.38 6.10 38.18 2.90
500 2144 9.566432 GAGATAAATGATTGGGTCTTTATCAGT 57.434 33.333 13.38 0.00 38.18 3.41
576 2244 1.189403 CCGCAGATTCGACGTCTAAC 58.811 55.000 14.70 4.40 0.00 2.34
599 2267 2.423577 CCGTACAGGTTCAAAGGAAGG 58.576 52.381 0.00 0.00 32.62 3.46
663 2331 5.064834 GGTAGAAAGAAATCGAAATCGGCTT 59.935 40.000 2.63 0.00 40.29 4.35
690 2358 4.082408 TGACGGTCATCTAAAGTACACCAG 60.082 45.833 6.76 0.00 0.00 4.00
787 2484 0.813821 GCAAAAGCAAGGAGGCTAGG 59.186 55.000 0.00 0.00 45.07 3.02
908 2608 0.532862 CGCCAAGAACACACCACTCT 60.533 55.000 0.00 0.00 0.00 3.24
953 2698 2.285083 GCTGAGCTTCTCTCTACGAGA 58.715 52.381 0.00 0.00 46.82 4.04
967 2712 2.371910 ACGAGAAAGTCAAGCTAGCC 57.628 50.000 12.13 0.00 0.00 3.93
1548 3297 2.887568 GGCCTCGTGCAGATCGTG 60.888 66.667 0.00 0.00 43.89 4.35
1687 3436 2.559668 TCGTCGGAACTCCAAACATACT 59.440 45.455 0.00 0.00 35.14 2.12
1688 3437 3.758023 TCGTCGGAACTCCAAACATACTA 59.242 43.478 0.00 0.00 35.14 1.82
1689 3438 3.855950 CGTCGGAACTCCAAACATACTAC 59.144 47.826 0.00 0.00 35.14 2.73
1691 3440 5.100943 GTCGGAACTCCAAACATACTACTC 58.899 45.833 0.00 0.00 35.14 2.59
1692 3441 4.159135 TCGGAACTCCAAACATACTACTCC 59.841 45.833 0.00 0.00 35.14 3.85
1693 3442 4.679905 CGGAACTCCAAACATACTACTCCC 60.680 50.000 0.00 0.00 35.14 4.30
1695 3444 5.395435 GGAACTCCAAACATACTACTCCCTC 60.395 48.000 0.00 0.00 35.64 4.30
1696 3445 4.031611 ACTCCAAACATACTACTCCCTCC 58.968 47.826 0.00 0.00 0.00 4.30
1697 3446 3.028850 TCCAAACATACTACTCCCTCCG 58.971 50.000 0.00 0.00 0.00 4.63
1698 3447 2.764572 CCAAACATACTACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
1699 3448 3.197116 CCAAACATACTACTCCCTCCGTT 59.803 47.826 0.00 0.00 0.00 4.44
1700 3449 4.430908 CAAACATACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
1701 3450 2.295885 ACATACTACTCCCTCCGTTCG 58.704 52.381 0.00 0.00 0.00 3.95
1702 3451 2.295885 CATACTACTCCCTCCGTTCGT 58.704 52.381 0.00 0.00 0.00 3.85
1703 3452 2.496899 TACTACTCCCTCCGTTCGTT 57.503 50.000 0.00 0.00 0.00 3.85
1704 3453 2.496899 ACTACTCCCTCCGTTCGTTA 57.503 50.000 0.00 0.00 0.00 3.18
1705 3454 3.010200 ACTACTCCCTCCGTTCGTTAT 57.990 47.619 0.00 0.00 0.00 1.89
1706 3455 3.359950 ACTACTCCCTCCGTTCGTTATT 58.640 45.455 0.00 0.00 0.00 1.40
1707 3456 4.526970 ACTACTCCCTCCGTTCGTTATTA 58.473 43.478 0.00 0.00 0.00 0.98
1708 3457 5.136105 ACTACTCCCTCCGTTCGTTATTAT 58.864 41.667 0.00 0.00 0.00 1.28
1709 3458 6.299141 ACTACTCCCTCCGTTCGTTATTATA 58.701 40.000 0.00 0.00 0.00 0.98
1710 3459 6.772716 ACTACTCCCTCCGTTCGTTATTATAA 59.227 38.462 0.00 0.00 0.00 0.98
1711 3460 6.081872 ACTCCCTCCGTTCGTTATTATAAG 57.918 41.667 0.00 0.00 0.00 1.73
1712 3461 5.829924 ACTCCCTCCGTTCGTTATTATAAGA 59.170 40.000 0.00 0.00 0.00 2.10
1713 3462 6.076981 TCCCTCCGTTCGTTATTATAAGAC 57.923 41.667 0.00 0.00 0.00 3.01
1714 3463 4.913924 CCCTCCGTTCGTTATTATAAGACG 59.086 45.833 14.60 14.60 38.09 4.18
1715 3464 5.506317 CCCTCCGTTCGTTATTATAAGACGT 60.506 44.000 18.12 0.00 37.95 4.34
1716 3465 5.973565 CCTCCGTTCGTTATTATAAGACGTT 59.026 40.000 18.12 0.00 37.95 3.99
1717 3466 6.473455 CCTCCGTTCGTTATTATAAGACGTTT 59.527 38.462 18.12 0.00 37.95 3.60
1718 3467 7.009540 CCTCCGTTCGTTATTATAAGACGTTTT 59.990 37.037 18.12 0.00 37.95 2.43
1719 3468 7.665471 TCCGTTCGTTATTATAAGACGTTTTG 58.335 34.615 18.12 10.31 37.95 2.44
1720 3469 6.896088 CCGTTCGTTATTATAAGACGTTTTGG 59.104 38.462 18.12 13.66 37.95 3.28
1721 3470 7.201427 CCGTTCGTTATTATAAGACGTTTTGGA 60.201 37.037 18.12 2.25 37.95 3.53
1722 3471 7.628327 CGTTCGTTATTATAAGACGTTTTGGAC 59.372 37.037 18.12 10.63 37.95 4.02
1723 3472 8.434661 GTTCGTTATTATAAGACGTTTTGGACA 58.565 33.333 18.12 1.18 37.95 4.02
1724 3473 8.176814 TCGTTATTATAAGACGTTTTGGACAG 57.823 34.615 18.12 0.00 37.95 3.51
1725 3474 6.898189 CGTTATTATAAGACGTTTTGGACAGC 59.102 38.462 13.21 0.00 32.52 4.40
1726 3475 7.201496 CGTTATTATAAGACGTTTTGGACAGCT 60.201 37.037 13.21 0.00 32.52 4.24
1727 3476 9.090692 GTTATTATAAGACGTTTTGGACAGCTA 57.909 33.333 0.83 0.00 0.00 3.32
1728 3477 7.772332 ATTATAAGACGTTTTGGACAGCTAG 57.228 36.000 0.83 0.00 0.00 3.42
1729 3478 1.797025 AGACGTTTTGGACAGCTAGC 58.203 50.000 6.62 6.62 0.00 3.42
1730 3479 1.344763 AGACGTTTTGGACAGCTAGCT 59.655 47.619 12.68 12.68 0.00 3.32
1731 3480 2.143925 GACGTTTTGGACAGCTAGCTT 58.856 47.619 16.46 6.82 0.00 3.74
1732 3481 2.548480 GACGTTTTGGACAGCTAGCTTT 59.452 45.455 16.46 9.34 0.00 3.51
1733 3482 2.290641 ACGTTTTGGACAGCTAGCTTTG 59.709 45.455 16.46 8.63 0.00 2.77
1734 3483 2.548057 CGTTTTGGACAGCTAGCTTTGA 59.452 45.455 16.46 0.00 0.00 2.69
1735 3484 3.003275 CGTTTTGGACAGCTAGCTTTGAA 59.997 43.478 16.46 2.74 0.00 2.69
1736 3485 4.290969 GTTTTGGACAGCTAGCTTTGAAC 58.709 43.478 16.46 10.39 0.00 3.18
1737 3486 3.492102 TTGGACAGCTAGCTTTGAACT 57.508 42.857 16.46 0.00 0.00 3.01
1738 3487 2.771089 TGGACAGCTAGCTTTGAACTG 58.229 47.619 16.46 5.33 0.00 3.16
1739 3488 2.104792 TGGACAGCTAGCTTTGAACTGT 59.895 45.455 16.46 9.03 43.93 3.55
1740 3489 3.142174 GGACAGCTAGCTTTGAACTGTT 58.858 45.455 16.46 0.00 41.45 3.16
1741 3490 3.565902 GGACAGCTAGCTTTGAACTGTTT 59.434 43.478 16.46 0.00 41.45 2.83
1742 3491 4.036852 GGACAGCTAGCTTTGAACTGTTTT 59.963 41.667 16.46 0.00 41.45 2.43
1743 3492 5.238650 GGACAGCTAGCTTTGAACTGTTTTA 59.761 40.000 16.46 0.00 41.45 1.52
1744 3493 6.305693 ACAGCTAGCTTTGAACTGTTTTAG 57.694 37.500 16.46 0.55 38.38 1.85
1745 3494 5.239525 ACAGCTAGCTTTGAACTGTTTTAGG 59.760 40.000 16.46 0.00 38.38 2.69
1746 3495 5.239525 CAGCTAGCTTTGAACTGTTTTAGGT 59.760 40.000 16.46 1.54 0.00 3.08
1747 3496 6.426937 CAGCTAGCTTTGAACTGTTTTAGGTA 59.573 38.462 16.46 2.58 0.00 3.08
1748 3497 6.427242 AGCTAGCTTTGAACTGTTTTAGGTAC 59.573 38.462 12.68 0.00 0.00 3.34
1749 3498 6.348295 GCTAGCTTTGAACTGTTTTAGGTACC 60.348 42.308 7.70 2.73 0.00 3.34
1750 3499 4.514066 AGCTTTGAACTGTTTTAGGTACCG 59.486 41.667 6.18 0.00 0.00 4.02
1751 3500 4.274214 GCTTTGAACTGTTTTAGGTACCGT 59.726 41.667 6.18 0.00 0.00 4.83
1752 3501 5.559608 GCTTTGAACTGTTTTAGGTACCGTC 60.560 44.000 6.18 0.00 0.00 4.79
1753 3502 4.942761 TGAACTGTTTTAGGTACCGTCT 57.057 40.909 6.18 0.00 0.00 4.18
1754 3503 4.624015 TGAACTGTTTTAGGTACCGTCTG 58.376 43.478 6.18 3.71 0.00 3.51
1755 3504 4.341806 TGAACTGTTTTAGGTACCGTCTGA 59.658 41.667 6.18 0.00 0.00 3.27
1756 3505 4.942761 ACTGTTTTAGGTACCGTCTGAA 57.057 40.909 6.18 0.00 0.00 3.02
1757 3506 5.479124 ACTGTTTTAGGTACCGTCTGAAT 57.521 39.130 6.18 0.00 0.00 2.57
1758 3507 5.861727 ACTGTTTTAGGTACCGTCTGAATT 58.138 37.500 6.18 0.00 0.00 2.17
1759 3508 5.699458 ACTGTTTTAGGTACCGTCTGAATTG 59.301 40.000 6.18 0.00 0.00 2.32
1760 3509 5.613329 TGTTTTAGGTACCGTCTGAATTGT 58.387 37.500 6.18 0.00 0.00 2.71
1761 3510 5.697633 TGTTTTAGGTACCGTCTGAATTGTC 59.302 40.000 6.18 0.00 0.00 3.18
1762 3511 5.733620 TTTAGGTACCGTCTGAATTGTCT 57.266 39.130 6.18 0.00 0.00 3.41
1763 3512 6.839124 TTTAGGTACCGTCTGAATTGTCTA 57.161 37.500 6.18 0.00 0.00 2.59
1764 3513 6.839124 TTAGGTACCGTCTGAATTGTCTAA 57.161 37.500 6.18 0.00 0.00 2.10
1765 3514 5.733620 AGGTACCGTCTGAATTGTCTAAA 57.266 39.130 6.18 0.00 0.00 1.85
1766 3515 6.105397 AGGTACCGTCTGAATTGTCTAAAA 57.895 37.500 6.18 0.00 0.00 1.52
1767 3516 6.708285 AGGTACCGTCTGAATTGTCTAAAAT 58.292 36.000 6.18 0.00 0.00 1.82
1768 3517 6.817140 AGGTACCGTCTGAATTGTCTAAAATC 59.183 38.462 6.18 0.00 0.00 2.17
1769 3518 5.779806 ACCGTCTGAATTGTCTAAAATCG 57.220 39.130 0.00 0.00 0.00 3.34
1770 3519 5.235516 ACCGTCTGAATTGTCTAAAATCGT 58.764 37.500 0.00 0.00 0.00 3.73
1771 3520 5.347907 ACCGTCTGAATTGTCTAAAATCGTC 59.652 40.000 0.00 0.00 0.00 4.20
1772 3521 5.577164 CCGTCTGAATTGTCTAAAATCGTCT 59.423 40.000 0.00 0.00 0.00 4.18
1773 3522 6.090898 CCGTCTGAATTGTCTAAAATCGTCTT 59.909 38.462 0.00 0.00 0.00 3.01
1774 3523 7.274904 CCGTCTGAATTGTCTAAAATCGTCTTA 59.725 37.037 0.00 0.00 0.00 2.10
1775 3524 8.808529 CGTCTGAATTGTCTAAAATCGTCTTAT 58.191 33.333 0.00 0.00 0.00 1.73
1784 3533 9.158233 TGTCTAAAATCGTCTTATAAAAGTGGG 57.842 33.333 0.00 0.00 34.13 4.61
1785 3534 9.159364 GTCTAAAATCGTCTTATAAAAGTGGGT 57.841 33.333 0.00 0.00 34.13 4.51
1789 3538 9.729281 AAAATCGTCTTATAAAAGTGGGTAGAA 57.271 29.630 0.00 0.00 34.13 2.10
1790 3539 9.729281 AAATCGTCTTATAAAAGTGGGTAGAAA 57.271 29.630 0.00 0.00 34.13 2.52
1791 3540 9.729281 AATCGTCTTATAAAAGTGGGTAGAAAA 57.271 29.630 0.00 0.00 34.13 2.29
1792 3541 9.729281 ATCGTCTTATAAAAGTGGGTAGAAAAA 57.271 29.630 0.00 0.00 34.13 1.94
1793 3542 9.211485 TCGTCTTATAAAAGTGGGTAGAAAAAG 57.789 33.333 0.00 0.00 34.13 2.27
1794 3543 8.996271 CGTCTTATAAAAGTGGGTAGAAAAAGT 58.004 33.333 0.00 0.00 34.13 2.66
1800 3549 7.966339 AAAAGTGGGTAGAAAAAGTACCTTT 57.034 32.000 0.00 0.00 40.05 3.11
1801 3550 7.966339 AAAGTGGGTAGAAAAAGTACCTTTT 57.034 32.000 1.77 1.77 44.27 2.27
2004 3759 5.933617 TCCAACATCCTCATAGAAATCCAG 58.066 41.667 0.00 0.00 0.00 3.86
2068 3824 7.241042 AGTGTAATTCCTAGTTTGCTCTGTA 57.759 36.000 0.00 0.00 0.00 2.74
2100 3856 1.271871 TGGCTGACATAGGGGTGTTTG 60.272 52.381 0.00 0.00 31.16 2.93
2756 4527 2.179018 GATTTGCCGCACGTGCAT 59.821 55.556 37.03 23.83 42.21 3.96
2863 4634 4.662961 GGCGGCCTTTGGTTGCAC 62.663 66.667 12.87 0.00 0.00 4.57
2864 4635 3.605664 GCGGCCTTTGGTTGCACT 61.606 61.111 0.00 0.00 0.00 4.40
2921 4692 4.100808 GGAGGTGCTCTCTGTAATGAAGAT 59.899 45.833 7.40 0.00 42.10 2.40
3028 4818 7.521115 AGAGGGGGAAAAATCCAGTATATACAT 59.479 37.037 15.18 0.00 0.00 2.29
3053 4843 8.506168 TGTGAAGACAAGATAAAACTTTCAGT 57.494 30.769 0.00 0.00 0.00 3.41
3074 4864 6.807230 TCAGTTTCACTAAATCTTAGTCGAGC 59.193 38.462 0.00 0.00 0.00 5.03
3091 4881 4.093261 GTCGAGCGAGACTTAGGTATATCC 59.907 50.000 7.25 0.00 38.09 2.59
3135 4925 9.926158 ATGAGATCTTATGTGTATGTCTCAATC 57.074 33.333 0.00 0.00 42.43 2.67
3159 4949 2.696775 TGAGACCTAACCTCACCCAAA 58.303 47.619 0.00 0.00 35.89 3.28
3181 5113 4.725790 AAAAATATCCTTGTGCCTCAGC 57.274 40.909 0.00 0.00 40.48 4.26
3186 5118 0.833409 TCCTTGTGCCTCAGCTCTCA 60.833 55.000 0.00 0.00 40.80 3.27
3300 5233 6.005198 ACGTGAATAATTTTGGGGTTCACTA 58.995 36.000 12.80 0.00 43.83 2.74
3309 5242 6.800072 TTTTGGGGTTCACTAAAATCAACT 57.200 33.333 0.00 0.00 0.00 3.16
3329 5262 7.782049 TCAACTCAATATCCGTAATCTCAACT 58.218 34.615 0.00 0.00 0.00 3.16
3330 5263 8.909923 TCAACTCAATATCCGTAATCTCAACTA 58.090 33.333 0.00 0.00 0.00 2.24
3331 5264 8.969267 CAACTCAATATCCGTAATCTCAACTAC 58.031 37.037 0.00 0.00 0.00 2.73
3332 5265 8.466617 ACTCAATATCCGTAATCTCAACTACT 57.533 34.615 0.00 0.00 0.00 2.57
3333 5266 8.569641 ACTCAATATCCGTAATCTCAACTACTC 58.430 37.037 0.00 0.00 0.00 2.59
3334 5267 7.883217 TCAATATCCGTAATCTCAACTACTCC 58.117 38.462 0.00 0.00 0.00 3.85
3335 5268 6.837471 ATATCCGTAATCTCAACTACTCCC 57.163 41.667 0.00 0.00 0.00 4.30
3336 5269 4.246712 TCCGTAATCTCAACTACTCCCT 57.753 45.455 0.00 0.00 0.00 4.20
3337 5270 4.607239 TCCGTAATCTCAACTACTCCCTT 58.393 43.478 0.00 0.00 0.00 3.95
3338 5271 4.643784 TCCGTAATCTCAACTACTCCCTTC 59.356 45.833 0.00 0.00 0.00 3.46
3339 5272 4.497674 CCGTAATCTCAACTACTCCCTTCG 60.498 50.000 0.00 0.00 0.00 3.79
3340 5273 4.096081 CGTAATCTCAACTACTCCCTTCGT 59.904 45.833 0.00 0.00 0.00 3.85
3341 5274 5.392811 CGTAATCTCAACTACTCCCTTCGTT 60.393 44.000 0.00 0.00 0.00 3.85
3342 5275 4.722361 ATCTCAACTACTCCCTTCGTTC 57.278 45.455 0.00 0.00 0.00 3.95
3343 5276 3.764218 TCTCAACTACTCCCTTCGTTCT 58.236 45.455 0.00 0.00 0.00 3.01
3344 5277 3.506455 TCTCAACTACTCCCTTCGTTCTG 59.494 47.826 0.00 0.00 0.00 3.02
3345 5278 3.493334 TCAACTACTCCCTTCGTTCTGA 58.507 45.455 0.00 0.00 0.00 3.27
3346 5279 3.893200 TCAACTACTCCCTTCGTTCTGAA 59.107 43.478 0.00 0.00 34.74 3.02
3347 5280 4.527038 TCAACTACTCCCTTCGTTCTGAAT 59.473 41.667 0.00 0.00 35.63 2.57
3348 5281 5.011738 TCAACTACTCCCTTCGTTCTGAATT 59.988 40.000 0.00 0.00 35.63 2.17
3349 5282 6.209986 TCAACTACTCCCTTCGTTCTGAATTA 59.790 38.462 0.00 0.00 35.63 1.40
3350 5283 5.963594 ACTACTCCCTTCGTTCTGAATTAC 58.036 41.667 0.00 0.00 35.63 1.89
3351 5284 5.715753 ACTACTCCCTTCGTTCTGAATTACT 59.284 40.000 0.00 0.00 35.63 2.24
3352 5285 5.485209 ACTCCCTTCGTTCTGAATTACTT 57.515 39.130 0.00 0.00 35.63 2.24
3353 5286 5.238583 ACTCCCTTCGTTCTGAATTACTTG 58.761 41.667 0.00 0.00 35.63 3.16
3354 5287 5.221661 ACTCCCTTCGTTCTGAATTACTTGT 60.222 40.000 0.00 0.00 35.63 3.16
3355 5288 5.235516 TCCCTTCGTTCTGAATTACTTGTC 58.764 41.667 0.00 0.00 35.63 3.18
3356 5289 4.091509 CCCTTCGTTCTGAATTACTTGTCG 59.908 45.833 0.00 0.00 35.63 4.35
3357 5290 4.434330 CCTTCGTTCTGAATTACTTGTCGC 60.434 45.833 0.00 0.00 35.63 5.19
3358 5291 3.644823 TCGTTCTGAATTACTTGTCGCA 58.355 40.909 0.00 0.00 0.00 5.10
3359 5292 4.242475 TCGTTCTGAATTACTTGTCGCAT 58.758 39.130 0.00 0.00 0.00 4.73
3360 5293 4.091365 TCGTTCTGAATTACTTGTCGCATG 59.909 41.667 0.00 0.00 0.00 4.06
3361 5294 4.143115 CGTTCTGAATTACTTGTCGCATGT 60.143 41.667 0.00 4.39 0.00 3.21
3362 5295 5.061684 CGTTCTGAATTACTTGTCGCATGTA 59.938 40.000 0.00 2.87 0.00 2.29
3363 5296 6.237835 CGTTCTGAATTACTTGTCGCATGTAT 60.238 38.462 0.00 0.00 0.00 2.29
3364 5297 6.588348 TCTGAATTACTTGTCGCATGTATG 57.412 37.500 0.00 0.00 0.00 2.39
3365 5298 6.337356 TCTGAATTACTTGTCGCATGTATGA 58.663 36.000 0.00 0.00 0.00 2.15
3366 5299 6.816140 TCTGAATTACTTGTCGCATGTATGAA 59.184 34.615 0.00 0.00 0.00 2.57
3367 5300 7.495606 TCTGAATTACTTGTCGCATGTATGAAT 59.504 33.333 0.00 0.00 0.00 2.57
3368 5301 7.408910 TGAATTACTTGTCGCATGTATGAATG 58.591 34.615 0.00 0.00 0.00 2.67
3369 5302 6.925610 ATTACTTGTCGCATGTATGAATGT 57.074 33.333 0.00 0.00 0.00 2.71
3370 5303 8.432110 AATTACTTGTCGCATGTATGAATGTA 57.568 30.769 0.00 0.00 0.00 2.29
3371 5304 7.835634 TTACTTGTCGCATGTATGAATGTAA 57.164 32.000 0.00 0.00 0.00 2.41
3372 5305 6.106877 ACTTGTCGCATGTATGAATGTAAC 57.893 37.500 0.00 0.00 0.00 2.50
3373 5306 5.874810 ACTTGTCGCATGTATGAATGTAACT 59.125 36.000 0.00 0.00 0.00 2.24
3374 5307 7.039270 ACTTGTCGCATGTATGAATGTAACTA 58.961 34.615 0.00 0.00 0.00 2.24
3375 5308 7.222805 ACTTGTCGCATGTATGAATGTAACTAG 59.777 37.037 0.00 0.00 0.00 2.57
3376 5309 6.801575 TGTCGCATGTATGAATGTAACTAGA 58.198 36.000 0.00 0.00 0.00 2.43
3377 5310 7.433680 TGTCGCATGTATGAATGTAACTAGAT 58.566 34.615 0.00 0.00 0.00 1.98
3378 5311 8.573035 TGTCGCATGTATGAATGTAACTAGATA 58.427 33.333 0.00 0.00 0.00 1.98
3379 5312 9.574458 GTCGCATGTATGAATGTAACTAGATAT 57.426 33.333 0.00 0.00 0.00 1.63
3409 5342 9.639601 TTAGTTCTAGATACATCCATTTATGCG 57.360 33.333 0.00 0.00 0.00 4.73
3410 5343 7.896811 AGTTCTAGATACATCCATTTATGCGA 58.103 34.615 0.00 0.00 0.00 5.10
3411 5344 7.815068 AGTTCTAGATACATCCATTTATGCGAC 59.185 37.037 0.00 0.00 0.00 5.19
3412 5345 6.322491 TCTAGATACATCCATTTATGCGACG 58.678 40.000 0.00 0.00 0.00 5.12
3413 5346 5.134202 AGATACATCCATTTATGCGACGA 57.866 39.130 0.00 0.00 0.00 4.20
3414 5347 5.164233 AGATACATCCATTTATGCGACGAG 58.836 41.667 0.00 0.00 0.00 4.18
3415 5348 3.179443 ACATCCATTTATGCGACGAGT 57.821 42.857 0.00 0.00 0.00 4.18
3416 5349 4.316205 ACATCCATTTATGCGACGAGTA 57.684 40.909 0.00 0.00 0.00 2.59
3417 5350 4.689071 ACATCCATTTATGCGACGAGTAA 58.311 39.130 0.00 0.00 0.00 2.24
3418 5351 5.297547 ACATCCATTTATGCGACGAGTAAT 58.702 37.500 0.00 0.00 0.00 1.89
3419 5352 5.758296 ACATCCATTTATGCGACGAGTAATT 59.242 36.000 0.00 0.00 0.00 1.40
3420 5353 6.260050 ACATCCATTTATGCGACGAGTAATTT 59.740 34.615 0.00 0.00 0.00 1.82
3421 5354 7.439955 ACATCCATTTATGCGACGAGTAATTTA 59.560 33.333 0.00 0.00 0.00 1.40
3422 5355 7.402811 TCCATTTATGCGACGAGTAATTTAG 57.597 36.000 0.00 0.00 0.00 1.85
3423 5356 7.204604 TCCATTTATGCGACGAGTAATTTAGA 58.795 34.615 0.00 0.00 0.00 2.10
3424 5357 7.707464 TCCATTTATGCGACGAGTAATTTAGAA 59.293 33.333 0.00 0.00 0.00 2.10
3425 5358 7.792508 CCATTTATGCGACGAGTAATTTAGAAC 59.207 37.037 0.00 0.00 0.00 3.01
3426 5359 6.486657 TTATGCGACGAGTAATTTAGAACG 57.513 37.500 0.00 0.00 0.00 3.95
3427 5360 3.173599 TGCGACGAGTAATTTAGAACGG 58.826 45.455 0.00 0.00 0.00 4.44
3428 5361 3.119884 TGCGACGAGTAATTTAGAACGGA 60.120 43.478 0.00 0.00 0.00 4.69
3429 5362 3.481388 GCGACGAGTAATTTAGAACGGAG 59.519 47.826 0.00 0.00 0.00 4.63
3430 5363 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
3431 5364 4.357996 GACGAGTAATTTAGAACGGAGGG 58.642 47.826 0.00 0.00 0.00 4.30
3432 5365 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
3433 5366 4.097589 ACGAGTAATTTAGAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
3500 5433 6.549952 CCTATGCTCTTGAGCTTACAAAAAG 58.450 40.000 21.17 9.49 35.49 2.27
3503 5436 3.977579 GCTCTTGAGCTTACAAAAAGTGC 59.022 43.478 14.65 0.00 32.37 4.40
3505 5438 5.173774 TCTTGAGCTTACAAAAAGTGCAG 57.826 39.130 0.00 0.00 0.00 4.41
3512 5445 7.013274 TGAGCTTACAAAAAGTGCAGAGTTATT 59.987 33.333 0.00 0.00 0.00 1.40
3696 5630 1.485066 AGCCAAGTAAGGATGGGTACG 59.515 52.381 0.00 0.00 45.14 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.640428 CGCTAGAAACTGCCGAATCA 58.360 50.000 0.00 0.00 0.00 2.57
21 22 2.442413 TGGAATTTAAAGCCAGTCCCG 58.558 47.619 8.15 0.00 0.00 5.14
25 26 5.876460 GCATCAAATGGAATTTAAAGCCAGT 59.124 36.000 15.31 11.33 46.64 4.00
29 30 5.876460 ACCTGCATCAAATGGAATTTAAAGC 59.124 36.000 0.00 0.00 46.64 3.51
43 44 4.314522 TTCCCTATTTGACCTGCATCAA 57.685 40.909 0.00 0.00 36.80 2.57
60 61 4.280677 TGGACTGTTTGATTGTTCATTCCC 59.719 41.667 0.00 0.00 31.55 3.97
61 62 5.452078 TGGACTGTTTGATTGTTCATTCC 57.548 39.130 0.00 0.00 32.66 3.01
70 71 7.278424 CACACAAAGAAATTGGACTGTTTGATT 59.722 33.333 4.91 0.00 43.66 2.57
72 73 6.098679 CACACAAAGAAATTGGACTGTTTGA 58.901 36.000 4.91 0.00 43.66 2.69
73 74 5.868801 ACACACAAAGAAATTGGACTGTTTG 59.131 36.000 0.00 0.00 43.66 2.93
81 82 5.278463 CCAGACCTACACACAAAGAAATTGG 60.278 44.000 0.00 0.00 43.66 3.16
92 93 0.605589 GCCCAACCAGACCTACACAC 60.606 60.000 0.00 0.00 0.00 3.82
93 94 0.766674 AGCCCAACCAGACCTACACA 60.767 55.000 0.00 0.00 0.00 3.72
95 96 0.690762 GAAGCCCAACCAGACCTACA 59.309 55.000 0.00 0.00 0.00 2.74
98 99 1.360393 TTGGAAGCCCAACCAGACCT 61.360 55.000 0.00 0.00 46.94 3.85
114 115 2.096174 TGTTTCGACTGGACGTTTTTGG 59.904 45.455 0.00 0.00 34.70 3.28
116 117 3.242936 CCATGTTTCGACTGGACGTTTTT 60.243 43.478 0.00 0.00 31.38 1.94
126 127 9.705290 ATTTAATTTAAAAGCCATGTTTCGACT 57.295 25.926 5.73 0.00 0.00 4.18
159 160 8.512956 GGTTGCTCGTATCATCTACTATTTCTA 58.487 37.037 0.00 0.00 0.00 2.10
164 165 6.650427 TTGGTTGCTCGTATCATCTACTAT 57.350 37.500 0.00 0.00 0.00 2.12
198 199 2.031919 AAACATCCGCCGCTCACA 59.968 55.556 0.00 0.00 0.00 3.58
264 265 0.037697 TCCGAGGTCAAACATGTCCG 60.038 55.000 0.00 0.00 0.00 4.79
320 321 1.449353 CCTAGCTGGCAGATGGGAC 59.551 63.158 28.77 4.27 33.75 4.46
441 442 8.102047 TCTTCATTATTGCCAATCAAATTTGGT 58.898 29.630 17.90 8.39 46.54 3.67
494 2138 5.469084 CGCATACTCTGGTACTGTACTGATA 59.531 44.000 16.79 10.12 0.00 2.15
495 2139 4.276183 CGCATACTCTGGTACTGTACTGAT 59.724 45.833 16.79 8.74 0.00 2.90
496 2140 3.626217 CGCATACTCTGGTACTGTACTGA 59.374 47.826 16.79 13.68 0.00 3.41
497 2141 3.377485 ACGCATACTCTGGTACTGTACTG 59.623 47.826 16.79 10.56 0.00 2.74
498 2142 3.618351 ACGCATACTCTGGTACTGTACT 58.382 45.455 16.79 0.37 0.00 2.73
499 2143 4.260948 GGTACGCATACTCTGGTACTGTAC 60.261 50.000 9.46 9.46 34.53 2.90
500 2144 3.879295 GGTACGCATACTCTGGTACTGTA 59.121 47.826 0.00 0.00 34.53 2.74
501 2145 2.686915 GGTACGCATACTCTGGTACTGT 59.313 50.000 0.00 0.00 34.53 3.55
533 2201 4.630069 TCAAGAGCTTAGGTTTAACGCATC 59.370 41.667 0.00 0.00 0.00 3.91
599 2267 9.534565 TGTTGATTGCTCATAGACTAATAGTTC 57.465 33.333 0.00 0.00 0.00 3.01
663 2331 4.707934 TGTACTTTAGATGACCGTCATGGA 59.292 41.667 18.84 3.47 42.00 3.41
690 2358 0.883833 ACATAGTTGCCAAGCTGTGC 59.116 50.000 0.88 0.88 0.00 4.57
787 2484 3.059597 CCGTGTGAACACTGTTGAGAATC 60.060 47.826 11.55 0.00 44.34 2.52
810 2510 3.994853 GGCTTTGGCTTTGGCGCT 61.995 61.111 7.64 0.00 39.81 5.92
884 2584 1.227853 GTGTGTTCTTGGCGAGGGT 60.228 57.895 0.97 0.00 0.00 4.34
908 2608 1.000506 GCAGGTAGTTGACGACTTGGA 59.999 52.381 0.00 0.00 39.86 3.53
953 2698 1.267121 TCCTCGGCTAGCTTGACTTT 58.733 50.000 15.72 0.00 0.00 2.66
967 2712 1.862008 GCTGCTACTCGACAATCCTCG 60.862 57.143 0.00 0.00 34.83 4.63
1548 3297 1.227002 GTCGGGGATCTGCGAGAAC 60.227 63.158 0.00 0.00 0.00 3.01
1687 3436 6.998074 TCTTATAATAACGAACGGAGGGAGTA 59.002 38.462 0.00 0.00 0.00 2.59
1688 3437 5.829924 TCTTATAATAACGAACGGAGGGAGT 59.170 40.000 0.00 0.00 0.00 3.85
1689 3438 6.148264 GTCTTATAATAACGAACGGAGGGAG 58.852 44.000 0.00 0.00 0.00 4.30
1691 3440 4.913924 CGTCTTATAATAACGAACGGAGGG 59.086 45.833 12.71 0.00 38.65 4.30
1692 3441 5.514279 ACGTCTTATAATAACGAACGGAGG 58.486 41.667 20.85 5.89 39.59 4.30
1693 3442 7.441878 AAACGTCTTATAATAACGAACGGAG 57.558 36.000 20.85 0.00 39.59 4.63
1695 3444 6.896088 CCAAAACGTCTTATAATAACGAACGG 59.104 38.462 20.85 13.54 39.59 4.44
1696 3445 7.628327 GTCCAAAACGTCTTATAATAACGAACG 59.372 37.037 20.85 11.12 39.59 3.95
1697 3446 8.434661 TGTCCAAAACGTCTTATAATAACGAAC 58.565 33.333 20.85 11.85 39.59 3.95
1698 3447 8.531622 TGTCCAAAACGTCTTATAATAACGAA 57.468 30.769 20.85 3.64 39.59 3.85
1699 3448 7.201461 GCTGTCCAAAACGTCTTATAATAACGA 60.201 37.037 20.85 0.00 39.59 3.85
1700 3449 6.898189 GCTGTCCAAAACGTCTTATAATAACG 59.102 38.462 15.23 15.23 41.93 3.18
1701 3450 7.971455 AGCTGTCCAAAACGTCTTATAATAAC 58.029 34.615 0.00 0.00 0.00 1.89
1702 3451 9.309516 CTAGCTGTCCAAAACGTCTTATAATAA 57.690 33.333 0.00 0.00 0.00 1.40
1703 3452 7.437267 GCTAGCTGTCCAAAACGTCTTATAATA 59.563 37.037 7.70 0.00 0.00 0.98
1704 3453 6.258068 GCTAGCTGTCCAAAACGTCTTATAAT 59.742 38.462 7.70 0.00 0.00 1.28
1705 3454 5.579511 GCTAGCTGTCCAAAACGTCTTATAA 59.420 40.000 7.70 0.00 0.00 0.98
1706 3455 5.105473 AGCTAGCTGTCCAAAACGTCTTATA 60.105 40.000 18.57 0.00 0.00 0.98
1707 3456 3.933332 GCTAGCTGTCCAAAACGTCTTAT 59.067 43.478 7.70 0.00 0.00 1.73
1708 3457 3.006537 AGCTAGCTGTCCAAAACGTCTTA 59.993 43.478 18.57 0.00 0.00 2.10
1709 3458 2.143925 GCTAGCTGTCCAAAACGTCTT 58.856 47.619 7.70 0.00 0.00 3.01
1710 3459 1.344763 AGCTAGCTGTCCAAAACGTCT 59.655 47.619 18.57 0.00 0.00 4.18
1711 3460 1.797025 AGCTAGCTGTCCAAAACGTC 58.203 50.000 18.57 0.00 0.00 4.34
1712 3461 2.256117 AAGCTAGCTGTCCAAAACGT 57.744 45.000 20.16 0.00 0.00 3.99
1713 3462 2.548057 TCAAAGCTAGCTGTCCAAAACG 59.452 45.455 20.16 0.00 0.00 3.60
1714 3463 4.036852 AGTTCAAAGCTAGCTGTCCAAAAC 59.963 41.667 20.16 15.78 0.00 2.43
1715 3464 4.036734 CAGTTCAAAGCTAGCTGTCCAAAA 59.963 41.667 20.16 4.67 0.00 2.44
1716 3465 3.565482 CAGTTCAAAGCTAGCTGTCCAAA 59.435 43.478 20.16 3.87 0.00 3.28
1717 3466 3.141398 CAGTTCAAAGCTAGCTGTCCAA 58.859 45.455 20.16 4.78 0.00 3.53
1718 3467 2.104792 ACAGTTCAAAGCTAGCTGTCCA 59.895 45.455 20.16 0.00 35.78 4.02
1719 3468 2.772287 ACAGTTCAAAGCTAGCTGTCC 58.228 47.619 20.16 2.70 35.78 4.02
1720 3469 4.820284 AAACAGTTCAAAGCTAGCTGTC 57.180 40.909 20.16 0.26 39.19 3.51
1721 3470 5.239525 CCTAAAACAGTTCAAAGCTAGCTGT 59.760 40.000 20.16 10.61 41.51 4.40
1722 3471 5.239525 ACCTAAAACAGTTCAAAGCTAGCTG 59.760 40.000 20.16 7.93 0.00 4.24
1723 3472 5.377478 ACCTAAAACAGTTCAAAGCTAGCT 58.623 37.500 12.68 12.68 0.00 3.32
1724 3473 5.690997 ACCTAAAACAGTTCAAAGCTAGC 57.309 39.130 6.62 6.62 0.00 3.42
1725 3474 6.128634 CGGTACCTAAAACAGTTCAAAGCTAG 60.129 42.308 10.90 0.00 0.00 3.42
1726 3475 5.697633 CGGTACCTAAAACAGTTCAAAGCTA 59.302 40.000 10.90 0.00 0.00 3.32
1727 3476 4.514066 CGGTACCTAAAACAGTTCAAAGCT 59.486 41.667 10.90 0.00 0.00 3.74
1728 3477 4.274214 ACGGTACCTAAAACAGTTCAAAGC 59.726 41.667 10.90 0.00 0.00 3.51
1729 3478 5.756833 AGACGGTACCTAAAACAGTTCAAAG 59.243 40.000 10.90 0.00 0.00 2.77
1730 3479 5.524646 CAGACGGTACCTAAAACAGTTCAAA 59.475 40.000 10.90 0.00 0.00 2.69
1731 3480 5.051816 CAGACGGTACCTAAAACAGTTCAA 58.948 41.667 10.90 0.00 0.00 2.69
1732 3481 4.341806 TCAGACGGTACCTAAAACAGTTCA 59.658 41.667 10.90 0.00 0.00 3.18
1733 3482 4.874970 TCAGACGGTACCTAAAACAGTTC 58.125 43.478 10.90 0.00 0.00 3.01
1734 3483 4.942761 TCAGACGGTACCTAAAACAGTT 57.057 40.909 10.90 0.00 0.00 3.16
1735 3484 4.942761 TTCAGACGGTACCTAAAACAGT 57.057 40.909 10.90 0.00 0.00 3.55
1736 3485 5.699458 ACAATTCAGACGGTACCTAAAACAG 59.301 40.000 10.90 0.00 0.00 3.16
1737 3486 5.613329 ACAATTCAGACGGTACCTAAAACA 58.387 37.500 10.90 0.00 0.00 2.83
1738 3487 5.930569 AGACAATTCAGACGGTACCTAAAAC 59.069 40.000 10.90 0.00 0.00 2.43
1739 3488 6.105397 AGACAATTCAGACGGTACCTAAAA 57.895 37.500 10.90 0.00 0.00 1.52
1740 3489 5.733620 AGACAATTCAGACGGTACCTAAA 57.266 39.130 10.90 0.00 0.00 1.85
1741 3490 6.839124 TTAGACAATTCAGACGGTACCTAA 57.161 37.500 10.90 0.00 0.00 2.69
1742 3491 6.839124 TTTAGACAATTCAGACGGTACCTA 57.161 37.500 10.90 0.00 0.00 3.08
1743 3492 5.733620 TTTAGACAATTCAGACGGTACCT 57.266 39.130 10.90 0.00 0.00 3.08
1744 3493 6.237755 CGATTTTAGACAATTCAGACGGTACC 60.238 42.308 0.16 0.16 0.00 3.34
1745 3494 6.309737 ACGATTTTAGACAATTCAGACGGTAC 59.690 38.462 0.00 0.00 0.00 3.34
1746 3495 6.392354 ACGATTTTAGACAATTCAGACGGTA 58.608 36.000 0.00 0.00 0.00 4.02
1747 3496 5.235516 ACGATTTTAGACAATTCAGACGGT 58.764 37.500 0.00 0.00 0.00 4.83
1748 3497 5.577164 AGACGATTTTAGACAATTCAGACGG 59.423 40.000 0.00 0.00 0.00 4.79
1749 3498 6.633668 AGACGATTTTAGACAATTCAGACG 57.366 37.500 0.00 0.00 0.00 4.18
1758 3507 9.158233 CCCACTTTTATAAGACGATTTTAGACA 57.842 33.333 0.00 0.00 35.30 3.41
1759 3508 9.159364 ACCCACTTTTATAAGACGATTTTAGAC 57.841 33.333 0.00 0.00 35.30 2.59
1763 3512 9.729281 TTCTACCCACTTTTATAAGACGATTTT 57.271 29.630 0.00 0.00 35.30 1.82
1764 3513 9.729281 TTTCTACCCACTTTTATAAGACGATTT 57.271 29.630 0.00 0.00 35.30 2.17
1765 3514 9.729281 TTTTCTACCCACTTTTATAAGACGATT 57.271 29.630 0.00 0.00 35.30 3.34
1766 3515 9.729281 TTTTTCTACCCACTTTTATAAGACGAT 57.271 29.630 0.00 0.00 35.30 3.73
1767 3516 9.211485 CTTTTTCTACCCACTTTTATAAGACGA 57.789 33.333 0.00 0.00 35.30 4.20
1768 3517 8.996271 ACTTTTTCTACCCACTTTTATAAGACG 58.004 33.333 0.00 0.00 35.30 4.18
1823 3572 8.189460 CGTCTTAAGTACTGTAGGATAGCTTTT 58.811 37.037 0.00 0.00 0.00 2.27
1825 3574 7.052873 TCGTCTTAAGTACTGTAGGATAGCTT 58.947 38.462 0.00 0.00 0.00 3.74
1827 3576 6.857777 TCGTCTTAAGTACTGTAGGATAGC 57.142 41.667 0.00 0.00 0.00 2.97
1828 3577 8.604640 TCATCGTCTTAAGTACTGTAGGATAG 57.395 38.462 0.00 0.00 0.00 2.08
1830 3579 7.876936 TTCATCGTCTTAAGTACTGTAGGAT 57.123 36.000 0.00 0.00 0.00 3.24
1831 3580 7.692460 TTTCATCGTCTTAAGTACTGTAGGA 57.308 36.000 0.00 0.00 0.00 2.94
1832 3581 8.808529 CAATTTCATCGTCTTAAGTACTGTAGG 58.191 37.037 0.00 0.00 0.00 3.18
2004 3759 1.662122 CGGTCATGGCTTTTACGTACC 59.338 52.381 0.00 0.00 0.00 3.34
2042 3797 5.289675 CAGAGCAAACTAGGAATTACACTCG 59.710 44.000 0.00 0.00 0.00 4.18
2068 3824 5.296780 CCTATGTCAGCCAACGATAACAAAT 59.703 40.000 0.00 0.00 0.00 2.32
2100 3856 1.153549 GCCCTGATCGTGTCCTGAC 60.154 63.158 0.00 0.00 0.00 3.51
2756 4527 5.424757 AGCATGCGGTTATAACTAAGTTGA 58.575 37.500 13.01 0.00 0.00 3.18
2909 4680 6.642950 CCCTACGCTCTTAATCTTCATTACAG 59.357 42.308 0.00 0.00 0.00 2.74
2921 4692 1.272807 AAGGCACCCTACGCTCTTAA 58.727 50.000 0.00 0.00 31.13 1.85
2964 4735 6.612049 TGTACAACAAAAATTAGGTCCCCTTT 59.388 34.615 0.00 0.00 34.61 3.11
3007 4778 8.918202 TCACATGTATATACTGGATTTTTCCC 57.082 34.615 13.89 0.00 0.00 3.97
3053 4843 5.946298 TCGCTCGACTAAGATTTAGTGAAA 58.054 37.500 6.24 0.00 0.00 2.69
3056 4846 4.965158 GTCTCGCTCGACTAAGATTTAGTG 59.035 45.833 6.24 0.71 0.00 2.74
3057 4847 4.877251 AGTCTCGCTCGACTAAGATTTAGT 59.123 41.667 1.34 1.34 42.19 2.24
3091 4881 9.438228 AGATCTCATGAATATAGCATCAAACAG 57.562 33.333 0.00 0.00 0.00 3.16
3135 4925 2.159085 GGGTGAGGTTAGGTCTCAATCG 60.159 54.545 0.00 0.00 42.13 3.34
3258 5191 6.862711 TCACGTATGGTTCAAACAACAATA 57.137 33.333 0.00 0.00 0.00 1.90
3300 5233 9.613428 TGAGATTACGGATATTGAGTTGATTTT 57.387 29.630 0.00 0.00 0.00 1.82
3309 5242 7.039923 GGGAGTAGTTGAGATTACGGATATTGA 60.040 40.741 0.00 0.00 0.00 2.57
3329 5262 6.014840 ACAAGTAATTCAGAACGAAGGGAGTA 60.015 38.462 0.00 0.00 36.95 2.59
3330 5263 5.221661 ACAAGTAATTCAGAACGAAGGGAGT 60.222 40.000 0.00 0.00 36.95 3.85
3331 5264 5.238583 ACAAGTAATTCAGAACGAAGGGAG 58.761 41.667 0.00 0.00 36.95 4.30
3332 5265 5.223449 ACAAGTAATTCAGAACGAAGGGA 57.777 39.130 0.00 0.00 36.95 4.20
3333 5266 4.091509 CGACAAGTAATTCAGAACGAAGGG 59.908 45.833 0.00 0.00 36.95 3.95
3334 5267 4.434330 GCGACAAGTAATTCAGAACGAAGG 60.434 45.833 0.00 0.00 36.95 3.46
3335 5268 4.149922 TGCGACAAGTAATTCAGAACGAAG 59.850 41.667 0.00 0.00 36.95 3.79
3336 5269 4.052608 TGCGACAAGTAATTCAGAACGAA 58.947 39.130 0.00 0.00 38.22 3.85
3337 5270 3.644823 TGCGACAAGTAATTCAGAACGA 58.355 40.909 0.00 0.00 0.00 3.85
3338 5271 4.143115 ACATGCGACAAGTAATTCAGAACG 60.143 41.667 0.00 0.00 0.00 3.95
3339 5272 5.283060 ACATGCGACAAGTAATTCAGAAC 57.717 39.130 0.00 0.00 0.00 3.01
3340 5273 6.816140 TCATACATGCGACAAGTAATTCAGAA 59.184 34.615 0.00 0.00 0.00 3.02
3341 5274 6.337356 TCATACATGCGACAAGTAATTCAGA 58.663 36.000 0.00 0.00 0.00 3.27
3342 5275 6.588348 TCATACATGCGACAAGTAATTCAG 57.412 37.500 0.00 0.00 0.00 3.02
3343 5276 6.976636 TTCATACATGCGACAAGTAATTCA 57.023 33.333 0.00 0.00 0.00 2.57
3344 5277 7.409697 ACATTCATACATGCGACAAGTAATTC 58.590 34.615 0.00 0.00 0.00 2.17
3345 5278 7.320443 ACATTCATACATGCGACAAGTAATT 57.680 32.000 0.00 0.00 0.00 1.40
3346 5279 6.925610 ACATTCATACATGCGACAAGTAAT 57.074 33.333 0.00 0.00 0.00 1.89
3347 5280 7.547722 AGTTACATTCATACATGCGACAAGTAA 59.452 33.333 0.00 0.00 0.00 2.24
3348 5281 7.039270 AGTTACATTCATACATGCGACAAGTA 58.961 34.615 0.00 0.00 0.00 2.24
3349 5282 5.874810 AGTTACATTCATACATGCGACAAGT 59.125 36.000 0.00 0.00 0.00 3.16
3350 5283 6.349973 AGTTACATTCATACATGCGACAAG 57.650 37.500 0.00 0.00 0.00 3.16
3351 5284 7.262048 TCTAGTTACATTCATACATGCGACAA 58.738 34.615 0.00 0.00 0.00 3.18
3352 5285 6.801575 TCTAGTTACATTCATACATGCGACA 58.198 36.000 0.00 0.00 0.00 4.35
3353 5286 7.875316 ATCTAGTTACATTCATACATGCGAC 57.125 36.000 0.00 0.00 0.00 5.19
3383 5316 9.639601 CGCATAAATGGATGTATCTAGAACTAA 57.360 33.333 0.00 0.00 0.00 2.24
3384 5317 9.020731 TCGCATAAATGGATGTATCTAGAACTA 57.979 33.333 0.00 0.00 0.00 2.24
3385 5318 7.815068 GTCGCATAAATGGATGTATCTAGAACT 59.185 37.037 0.00 0.00 0.00 3.01
3386 5319 7.201359 CGTCGCATAAATGGATGTATCTAGAAC 60.201 40.741 0.00 0.00 0.00 3.01
3387 5320 6.806739 CGTCGCATAAATGGATGTATCTAGAA 59.193 38.462 0.00 0.00 0.00 2.10
3388 5321 6.150474 TCGTCGCATAAATGGATGTATCTAGA 59.850 38.462 0.00 0.00 0.00 2.43
3389 5322 6.322491 TCGTCGCATAAATGGATGTATCTAG 58.678 40.000 0.00 0.00 0.00 2.43
3390 5323 6.072119 ACTCGTCGCATAAATGGATGTATCTA 60.072 38.462 0.00 0.00 0.00 1.98
3391 5324 5.134202 TCGTCGCATAAATGGATGTATCT 57.866 39.130 0.00 0.00 0.00 1.98
3392 5325 4.923871 ACTCGTCGCATAAATGGATGTATC 59.076 41.667 0.00 0.00 0.00 2.24
3393 5326 4.883083 ACTCGTCGCATAAATGGATGTAT 58.117 39.130 0.00 0.00 0.00 2.29
3394 5327 4.316205 ACTCGTCGCATAAATGGATGTA 57.684 40.909 0.00 0.00 0.00 2.29
3395 5328 3.179443 ACTCGTCGCATAAATGGATGT 57.821 42.857 0.00 0.00 0.00 3.06
3396 5329 5.845985 ATTACTCGTCGCATAAATGGATG 57.154 39.130 0.00 0.00 0.00 3.51
3397 5330 6.861065 AAATTACTCGTCGCATAAATGGAT 57.139 33.333 0.00 0.00 0.00 3.41
3398 5331 7.204604 TCTAAATTACTCGTCGCATAAATGGA 58.795 34.615 0.00 0.00 0.00 3.41
3399 5332 7.402811 TCTAAATTACTCGTCGCATAAATGG 57.597 36.000 0.00 0.00 0.00 3.16
3400 5333 7.522884 CGTTCTAAATTACTCGTCGCATAAATG 59.477 37.037 0.00 0.00 0.00 2.32
3401 5334 7.306399 CCGTTCTAAATTACTCGTCGCATAAAT 60.306 37.037 0.00 0.00 0.00 1.40
3402 5335 6.020440 CCGTTCTAAATTACTCGTCGCATAAA 60.020 38.462 0.00 0.00 0.00 1.40
3403 5336 5.456497 CCGTTCTAAATTACTCGTCGCATAA 59.544 40.000 0.00 0.00 0.00 1.90
3404 5337 4.971830 CCGTTCTAAATTACTCGTCGCATA 59.028 41.667 0.00 0.00 0.00 3.14
3405 5338 3.795101 CCGTTCTAAATTACTCGTCGCAT 59.205 43.478 0.00 0.00 0.00 4.73
3406 5339 3.119884 TCCGTTCTAAATTACTCGTCGCA 60.120 43.478 0.00 0.00 0.00 5.10
3407 5340 3.429085 TCCGTTCTAAATTACTCGTCGC 58.571 45.455 0.00 0.00 0.00 5.19
3408 5341 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
3409 5342 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
3410 5343 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
3411 5344 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
3412 5345 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
3413 5346 6.430007 TCTACTCCCTCCGTTCTAAATTACT 58.570 40.000 0.00 0.00 0.00 2.24
3414 5347 6.705863 TCTACTCCCTCCGTTCTAAATTAC 57.294 41.667 0.00 0.00 0.00 1.89
3415 5348 6.837568 ACATCTACTCCCTCCGTTCTAAATTA 59.162 38.462 0.00 0.00 0.00 1.40
3416 5349 5.661759 ACATCTACTCCCTCCGTTCTAAATT 59.338 40.000 0.00 0.00 0.00 1.82
3417 5350 5.209659 ACATCTACTCCCTCCGTTCTAAAT 58.790 41.667 0.00 0.00 0.00 1.40
3418 5351 4.607239 ACATCTACTCCCTCCGTTCTAAA 58.393 43.478 0.00 0.00 0.00 1.85
3419 5352 4.246712 ACATCTACTCCCTCCGTTCTAA 57.753 45.455 0.00 0.00 0.00 2.10
3420 5353 3.947612 ACATCTACTCCCTCCGTTCTA 57.052 47.619 0.00 0.00 0.00 2.10
3421 5354 2.830651 ACATCTACTCCCTCCGTTCT 57.169 50.000 0.00 0.00 0.00 3.01
3422 5355 3.889520 AAACATCTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
3423 5356 3.581332 TCAAAACATCTACTCCCTCCGTT 59.419 43.478 0.00 0.00 0.00 4.44
3424 5357 3.170717 TCAAAACATCTACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
3425 5358 3.887621 TCAAAACATCTACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
3426 5359 4.019231 AGGTTCAAAACATCTACTCCCTCC 60.019 45.833 0.00 0.00 0.00 4.30
3427 5360 5.167303 AGGTTCAAAACATCTACTCCCTC 57.833 43.478 0.00 0.00 0.00 4.30
3428 5361 5.073144 TCAAGGTTCAAAACATCTACTCCCT 59.927 40.000 0.00 0.00 0.00 4.20
3429 5362 5.313712 TCAAGGTTCAAAACATCTACTCCC 58.686 41.667 0.00 0.00 0.00 4.30
3430 5363 6.655003 TCATCAAGGTTCAAAACATCTACTCC 59.345 38.462 0.00 0.00 0.00 3.85
3431 5364 7.672983 TCATCAAGGTTCAAAACATCTACTC 57.327 36.000 0.00 0.00 0.00 2.59
3432 5365 8.463930 TTTCATCAAGGTTCAAAACATCTACT 57.536 30.769 0.00 0.00 0.00 2.57
3433 5366 9.346725 GATTTCATCAAGGTTCAAAACATCTAC 57.653 33.333 0.00 0.00 0.00 2.59
3464 5397 2.401967 GCATAGGCTTGCACCTCTG 58.598 57.895 14.15 1.96 42.31 3.35
3500 5433 9.946165 ACAAGTTAAAGTAAAATAACTCTGCAC 57.054 29.630 0.00 0.00 40.51 4.57
3503 5436 9.394477 GGCACAAGTTAAAGTAAAATAACTCTG 57.606 33.333 0.00 0.00 40.51 3.35
3505 5438 7.811236 GGGGCACAAGTTAAAGTAAAATAACTC 59.189 37.037 0.00 0.00 40.51 3.01
3512 5445 4.279145 TGTGGGGCACAAGTTAAAGTAAA 58.721 39.130 0.00 0.00 41.69 2.01
3558 5491 6.078664 ACAGTGTCCCCCAATTATTTGTTTA 58.921 36.000 0.00 0.00 0.00 2.01
3572 5505 3.764237 TTCTCTGTAAACAGTGTCCCC 57.236 47.619 9.81 0.00 44.12 4.81
3684 5618 0.325860 TACCCTGCGTACCCATCCTT 60.326 55.000 0.00 0.00 0.00 3.36
3696 5630 2.877335 CTTTCGTGACTAGTACCCTGC 58.123 52.381 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.