Multiple sequence alignment - TraesCS5A01G114800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G114800 chr5A 100.000 4131 0 0 1 4131 229920584 229924714 0.000000e+00 7629.0
1 TraesCS5A01G114800 chr5A 86.567 201 24 3 719 918 573810649 573810451 6.950000e-53 219.0
2 TraesCS5A01G114800 chr5D 92.038 2110 100 34 1164 3220 191907560 191905466 0.000000e+00 2904.0
3 TraesCS5A01G114800 chr5D 95.553 877 31 4 3263 4131 191905467 191904591 0.000000e+00 1397.0
4 TraesCS5A01G114800 chr5D 86.935 199 23 3 719 916 514456113 514455917 1.930000e-53 220.0
5 TraesCS5A01G114800 chr5D 91.096 146 12 1 259 403 190235274 190235129 3.260000e-46 196.0
6 TraesCS5A01G114800 chr5B 94.332 1535 45 14 2622 4131 196240557 196239040 0.000000e+00 2314.0
7 TraesCS5A01G114800 chr5B 90.058 1217 56 15 1373 2561 196246093 196244914 0.000000e+00 1517.0
8 TraesCS5A01G114800 chr5B 94.207 328 15 4 1062 1388 196253186 196252862 7.970000e-137 497.0
9 TraesCS5A01G114800 chr5B 88.034 351 32 7 259 608 196254850 196254509 1.380000e-109 407.0
10 TraesCS5A01G114800 chr5B 87.987 308 29 4 1 301 196255156 196254850 1.410000e-94 357.0
11 TraesCS5A01G114800 chr5B 96.032 126 1 2 919 1040 196253598 196253473 7.000000e-48 202.0
12 TraesCS5A01G114800 chr5B 95.082 61 3 0 2566 2626 196244927 196244867 3.400000e-16 97.1
13 TraesCS5A01G114800 chr3B 86.739 1561 112 38 1190 2706 586864683 586863174 0.000000e+00 1648.0
14 TraesCS5A01G114800 chr3B 89.082 980 44 32 2738 3678 586863175 586862220 0.000000e+00 1158.0
15 TraesCS5A01G114800 chr3B 86.935 199 23 3 719 916 669645736 669645540 1.930000e-53 220.0
16 TraesCS5A01G114800 chr3A 87.631 1245 76 35 2738 3921 589374518 589373291 0.000000e+00 1375.0
17 TraesCS5A01G114800 chr3A 87.855 634 43 14 1811 2416 589376214 589375587 0.000000e+00 713.0
18 TraesCS5A01G114800 chr3A 85.603 514 48 18 1249 1759 589376706 589376216 2.200000e-142 516.0
19 TraesCS5A01G114800 chr3A 88.136 236 18 3 2471 2706 589374742 589374517 5.260000e-69 272.0
20 TraesCS5A01G114800 chr3A 85.185 216 28 4 713 926 690792977 690792764 6.950000e-53 219.0
21 TraesCS5A01G114800 chr3D 86.147 924 69 26 1811 2706 447634378 447633486 0.000000e+00 942.0
22 TraesCS5A01G114800 chr3D 88.117 648 41 12 3305 3942 447632850 447632229 0.000000e+00 737.0
23 TraesCS5A01G114800 chr3D 88.945 597 30 16 2738 3301 447633487 447632894 0.000000e+00 704.0
24 TraesCS5A01G114800 chr3D 85.099 557 40 13 1218 1759 447634908 447634380 2.830000e-146 529.0
25 TraesCS5A01G114800 chr3D 93.103 145 4 4 915 1054 447635060 447634917 1.510000e-49 207.0
26 TraesCS5A01G114800 chr6A 87.255 204 23 3 714 916 520363946 520364147 3.210000e-56 230.0
27 TraesCS5A01G114800 chr6A 84.722 216 29 4 713 926 570985523 570985736 3.230000e-51 213.0
28 TraesCS5A01G114800 chr7D 86.341 205 24 4 713 916 187108037 187108238 1.930000e-53 220.0
29 TraesCS5A01G114800 chr6D 86.275 204 24 4 716 918 402874475 402874275 6.950000e-53 219.0
30 TraesCS5A01G114800 chr1A 84.722 216 29 4 713 926 586372930 586372717 3.230000e-51 213.0
31 TraesCS5A01G114800 chr2D 88.889 117 11 2 48 162 96421678 96421562 4.300000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G114800 chr5A 229920584 229924714 4130 False 7629.00 7629 100.00000 1 4131 1 chr5A.!!$F1 4130
1 TraesCS5A01G114800 chr5D 191904591 191907560 2969 True 2150.50 2904 93.79550 1164 4131 2 chr5D.!!$R3 2967
2 TraesCS5A01G114800 chr5B 196239040 196240557 1517 True 2314.00 2314 94.33200 2622 4131 1 chr5B.!!$R1 1509
3 TraesCS5A01G114800 chr5B 196244867 196246093 1226 True 807.05 1517 92.57000 1373 2626 2 chr5B.!!$R2 1253
4 TraesCS5A01G114800 chr5B 196252862 196255156 2294 True 365.75 497 91.56500 1 1388 4 chr5B.!!$R3 1387
5 TraesCS5A01G114800 chr3B 586862220 586864683 2463 True 1403.00 1648 87.91050 1190 3678 2 chr3B.!!$R2 2488
6 TraesCS5A01G114800 chr3A 589373291 589376706 3415 True 719.00 1375 87.30625 1249 3921 4 chr3A.!!$R2 2672
7 TraesCS5A01G114800 chr3D 447632229 447635060 2831 True 623.80 942 88.28220 915 3942 5 chr3D.!!$R1 3027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 1489 0.107643 TGTGTGCAATTCACTCGGGA 59.892 50.000 7.38 0.0 45.81 5.14 F
1058 1911 0.253820 AACTCCCATCACCCCTCCAT 60.254 55.000 0.00 0.0 0.00 3.41 F
1069 2187 1.000896 CCCTCCATCCACAACACCC 60.001 63.158 0.00 0.0 0.00 4.61 F
2028 3174 0.392193 GACTGGGATGTGTGGAGCAG 60.392 60.000 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 2994 0.732880 CAGGTCTGCTACGGTGTTCG 60.733 60.000 0.0 0.0 45.88 3.95 R
1886 3029 0.740737 ACACAGCCAGTTTTCAGTGC 59.259 50.000 0.0 0.0 0.00 4.40 R
2417 3595 1.068741 CCGGTATGCAGAGTAAGGGAC 59.931 57.143 0.0 0.0 0.00 4.46 R
3853 5944 1.086696 CGCAGGTCAACGGAAATGAT 58.913 50.000 0.0 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.338259 CAGCAAATTACATCACTAGATTACACC 58.662 37.037 0.00 0.00 30.20 4.16
43 44 8.046708 AGCAAATTACATCACTAGATTACACCA 58.953 33.333 0.00 0.00 30.20 4.17
64 65 6.599244 CACCAAGGAAAATCTGTAGCTATTCA 59.401 38.462 0.00 0.00 0.00 2.57
65 66 7.284034 CACCAAGGAAAATCTGTAGCTATTCAT 59.716 37.037 0.00 0.00 0.00 2.57
66 67 7.836183 ACCAAGGAAAATCTGTAGCTATTCATT 59.164 33.333 0.00 0.00 0.00 2.57
76 77 6.094048 TCTGTAGCTATTCATTGCAAAACTCC 59.906 38.462 1.71 0.00 0.00 3.85
77 78 5.709631 TGTAGCTATTCATTGCAAAACTCCA 59.290 36.000 1.71 0.00 0.00 3.86
99 101 4.782019 AAGAAACAGAGCACAAACACAA 57.218 36.364 0.00 0.00 0.00 3.33
110 112 3.269178 CACAAACACAACAGCCCAAAAT 58.731 40.909 0.00 0.00 0.00 1.82
183 189 2.175184 CTTTCACTTCCAGGCGCACG 62.175 60.000 10.83 0.00 0.00 5.34
197 203 0.179240 CGCACGCTCACTTCATTGTC 60.179 55.000 0.00 0.00 0.00 3.18
226 232 2.357517 AGCTCGTTTGTGAGGCGG 60.358 61.111 0.00 0.00 36.47 6.13
233 239 3.758973 TTTGTGAGGCGGGCGTCAA 62.759 57.895 16.55 6.96 41.55 3.18
246 252 0.737715 GCGTCAACGATGAGGAGCTT 60.738 55.000 18.08 0.00 42.66 3.74
252 258 3.632604 TCAACGATGAGGAGCTTAGTAGG 59.367 47.826 0.00 0.00 0.00 3.18
253 259 3.579534 ACGATGAGGAGCTTAGTAGGA 57.420 47.619 0.00 0.00 0.00 2.94
254 260 4.107127 ACGATGAGGAGCTTAGTAGGAT 57.893 45.455 0.00 0.00 0.00 3.24
255 261 3.823873 ACGATGAGGAGCTTAGTAGGATG 59.176 47.826 0.00 0.00 0.00 3.51
256 262 4.075682 CGATGAGGAGCTTAGTAGGATGA 58.924 47.826 0.00 0.00 0.00 2.92
257 263 4.704540 CGATGAGGAGCTTAGTAGGATGAT 59.295 45.833 0.00 0.00 0.00 2.45
258 264 5.163663 CGATGAGGAGCTTAGTAGGATGATC 60.164 48.000 0.00 0.00 0.00 2.92
259 265 4.075682 TGAGGAGCTTAGTAGGATGATCG 58.924 47.826 0.00 0.00 0.00 3.69
260 266 3.426615 AGGAGCTTAGTAGGATGATCGG 58.573 50.000 0.00 0.00 0.00 4.18
261 267 2.094442 GGAGCTTAGTAGGATGATCGGC 60.094 54.545 0.00 0.00 0.00 5.54
263 269 1.402984 GCTTAGTAGGATGATCGGCGG 60.403 57.143 7.21 0.00 0.00 6.13
264 270 0.601558 TTAGTAGGATGATCGGCGGC 59.398 55.000 7.21 0.00 0.00 6.53
265 271 0.538746 TAGTAGGATGATCGGCGGCA 60.539 55.000 10.53 6.43 0.00 5.69
284 333 0.737715 ATCGAGCGGAGAAGCACAAC 60.738 55.000 0.00 0.00 40.15 3.32
285 334 1.664649 CGAGCGGAGAAGCACAACA 60.665 57.895 0.00 0.00 40.15 3.33
286 335 1.016130 CGAGCGGAGAAGCACAACAT 61.016 55.000 0.00 0.00 40.15 2.71
296 345 0.667487 AGCACAACATGGAGACGACG 60.667 55.000 0.00 0.00 0.00 5.12
330 380 4.087892 CCGGTGGTGAGGCAGAGG 62.088 72.222 0.00 0.00 0.00 3.69
339 389 1.220477 GAGGCAGAGGAGAAGGTGC 59.780 63.158 0.00 0.00 35.07 5.01
354 404 2.283173 TGCTGCTGGAGGAGACGA 60.283 61.111 0.00 0.00 35.31 4.20
358 408 1.002990 TGCTGGAGGAGACGACGTA 60.003 57.895 0.00 0.00 0.00 3.57
365 415 1.377725 GGAGACGACGTAGGGGTGA 60.378 63.158 0.00 0.00 0.00 4.02
406 456 4.918201 GGCGAAGGAGATGGCGGG 62.918 72.222 0.00 0.00 0.00 6.13
432 482 1.374758 GTGAGAAGTGAGGCGGTGG 60.375 63.158 0.00 0.00 0.00 4.61
448 498 2.519780 GGCGGGTCGAGAGGAGAT 60.520 66.667 0.00 0.00 0.00 2.75
451 501 1.524165 CGGGTCGAGAGGAGATCGT 60.524 63.158 0.00 0.00 40.95 3.73
453 503 1.608542 CGGGTCGAGAGGAGATCGTAT 60.609 57.143 0.00 0.00 40.95 3.06
457 507 4.255301 GGTCGAGAGGAGATCGTATGTAT 58.745 47.826 0.00 0.00 40.95 2.29
485 535 1.476488 ACCCGCTTGATTTACAATGCC 59.524 47.619 0.00 0.00 37.88 4.40
492 542 4.321156 GCTTGATTTACAATGCCTGTGTGA 60.321 41.667 0.00 0.00 39.20 3.58
515 565 2.065512 GGCCCAATTTGTTAGTTTGCG 58.934 47.619 0.00 0.00 0.00 4.85
519 569 4.926832 GCCCAATTTGTTAGTTTGCGTAAT 59.073 37.500 0.00 0.00 0.00 1.89
531 581 5.172934 AGTTTGCGTAATACGAGGATTTGA 58.827 37.500 17.71 0.00 46.05 2.69
533 583 4.380841 TGCGTAATACGAGGATTTGAGT 57.619 40.909 17.71 0.00 46.05 3.41
534 584 4.109766 TGCGTAATACGAGGATTTGAGTG 58.890 43.478 17.71 0.00 46.05 3.51
535 585 3.489785 GCGTAATACGAGGATTTGAGTGG 59.510 47.826 17.71 0.00 46.05 4.00
536 586 4.679662 CGTAATACGAGGATTTGAGTGGT 58.320 43.478 7.05 0.00 46.05 4.16
537 587 4.503007 CGTAATACGAGGATTTGAGTGGTG 59.497 45.833 7.05 0.00 46.05 4.17
538 588 2.380084 TACGAGGATTTGAGTGGTGC 57.620 50.000 0.00 0.00 0.00 5.01
539 589 0.670546 ACGAGGATTTGAGTGGTGCG 60.671 55.000 0.00 0.00 0.00 5.34
540 590 0.670546 CGAGGATTTGAGTGGTGCGT 60.671 55.000 0.00 0.00 0.00 5.24
549 599 1.687660 TGAGTGGTGCGTTGGTAGTTA 59.312 47.619 0.00 0.00 0.00 2.24
553 603 1.071071 TGGTGCGTTGGTAGTTAGCTT 59.929 47.619 0.00 0.00 0.00 3.74
562 612 6.702897 CGTTGGTAGTTAGCTTATAAGTTGC 58.297 40.000 13.91 6.09 0.00 4.17
564 614 6.211587 TGGTAGTTAGCTTATAAGTTGCGA 57.788 37.500 13.91 0.52 0.00 5.10
572 622 6.494893 AGCTTATAAGTTGCGATTTTGTGA 57.505 33.333 13.91 0.00 0.00 3.58
583 633 6.917217 TGCGATTTTGTGAAAAATTTCCTT 57.083 29.167 3.60 0.00 36.36 3.36
605 655 9.969001 TCCTTAAAAGCTGGTGTAAACTATTAT 57.031 29.630 0.00 0.00 0.00 1.28
611 661 9.734984 AAAGCTGGTGTAAACTATTATAAGTGT 57.265 29.630 0.00 0.00 0.00 3.55
613 663 7.985752 AGCTGGTGTAAACTATTATAAGTGTCC 59.014 37.037 0.00 0.00 0.00 4.02
615 665 8.383374 TGGTGTAAACTATTATAAGTGTCCCT 57.617 34.615 0.00 0.00 0.00 4.20
627 1470 9.975218 ATTATAAGTGTCCCTAAAGATTGTGTT 57.025 29.630 0.00 0.00 0.00 3.32
628 1471 7.687941 ATAAGTGTCCCTAAAGATTGTGTTG 57.312 36.000 0.00 0.00 0.00 3.33
646 1489 0.107643 TGTGTGCAATTCACTCGGGA 59.892 50.000 7.38 0.00 45.81 5.14
697 1545 7.733773 TTAGAACATCTCATTGTCCTTCCTA 57.266 36.000 0.00 0.00 0.00 2.94
714 1562 4.618920 TCCTACGAAGCCTTTCTTTTCT 57.381 40.909 0.00 0.00 34.56 2.52
715 1563 4.566987 TCCTACGAAGCCTTTCTTTTCTC 58.433 43.478 0.00 0.00 34.56 2.87
717 1565 4.627900 CCTACGAAGCCTTTCTTTTCTCTC 59.372 45.833 0.00 0.00 34.56 3.20
718 1566 4.073293 ACGAAGCCTTTCTTTTCTCTCA 57.927 40.909 0.00 0.00 34.56 3.27
719 1567 4.061596 ACGAAGCCTTTCTTTTCTCTCAG 58.938 43.478 0.00 0.00 34.56 3.35
720 1568 3.434984 CGAAGCCTTTCTTTTCTCTCAGG 59.565 47.826 0.00 0.00 34.56 3.86
721 1569 2.789213 AGCCTTTCTTTTCTCTCAGGC 58.211 47.619 0.00 0.00 46.16 4.85
722 1570 2.789213 GCCTTTCTTTTCTCTCAGGCT 58.211 47.619 0.58 0.00 43.06 4.58
723 1571 3.153130 GCCTTTCTTTTCTCTCAGGCTT 58.847 45.455 0.58 0.00 43.06 4.35
724 1572 3.571828 GCCTTTCTTTTCTCTCAGGCTTT 59.428 43.478 0.58 0.00 43.06 3.51
725 1573 4.762251 GCCTTTCTTTTCTCTCAGGCTTTA 59.238 41.667 0.58 0.00 43.06 1.85
726 1574 5.417266 GCCTTTCTTTTCTCTCAGGCTTTAT 59.583 40.000 0.58 0.00 43.06 1.40
727 1575 6.599638 GCCTTTCTTTTCTCTCAGGCTTTATA 59.400 38.462 0.58 0.00 43.06 0.98
728 1576 7.284261 GCCTTTCTTTTCTCTCAGGCTTTATAT 59.716 37.037 0.58 0.00 43.06 0.86
729 1577 9.838339 CCTTTCTTTTCTCTCAGGCTTTATATA 57.162 33.333 0.00 0.00 0.00 0.86
733 1581 9.784531 TCTTTTCTCTCAGGCTTTATATAATGG 57.215 33.333 9.66 2.22 0.00 3.16
734 1582 8.924511 TTTTCTCTCAGGCTTTATATAATGGG 57.075 34.615 9.66 0.07 0.00 4.00
735 1583 7.872061 TTCTCTCAGGCTTTATATAATGGGA 57.128 36.000 9.66 4.01 0.00 4.37
736 1584 7.487822 TCTCTCAGGCTTTATATAATGGGAG 57.512 40.000 13.98 13.98 36.76 4.30
737 1585 6.441924 TCTCTCAGGCTTTATATAATGGGAGG 59.558 42.308 17.71 5.78 36.22 4.30
738 1586 6.091555 TCTCAGGCTTTATATAATGGGAGGT 58.908 40.000 9.66 0.00 0.00 3.85
739 1587 6.013379 TCTCAGGCTTTATATAATGGGAGGTG 60.013 42.308 9.66 0.00 0.00 4.00
740 1588 4.702131 CAGGCTTTATATAATGGGAGGTGC 59.298 45.833 9.66 0.00 0.00 5.01
741 1589 4.603610 AGGCTTTATATAATGGGAGGTGCT 59.396 41.667 9.66 0.00 0.00 4.40
742 1590 5.075067 AGGCTTTATATAATGGGAGGTGCTT 59.925 40.000 9.66 0.00 0.00 3.91
743 1591 6.274672 AGGCTTTATATAATGGGAGGTGCTTA 59.725 38.462 9.66 0.00 0.00 3.09
744 1592 6.946009 GGCTTTATATAATGGGAGGTGCTTAA 59.054 38.462 9.66 0.00 0.00 1.85
745 1593 7.450323 GGCTTTATATAATGGGAGGTGCTTAAA 59.550 37.037 9.66 0.00 0.00 1.52
746 1594 8.856103 GCTTTATATAATGGGAGGTGCTTAAAA 58.144 33.333 9.66 0.00 0.00 1.52
751 1599 5.665916 AATGGGAGGTGCTTAAAAAGATG 57.334 39.130 0.00 0.00 0.00 2.90
752 1600 4.380843 TGGGAGGTGCTTAAAAAGATGA 57.619 40.909 0.00 0.00 0.00 2.92
753 1601 4.934356 TGGGAGGTGCTTAAAAAGATGAT 58.066 39.130 0.00 0.00 0.00 2.45
754 1602 5.332743 TGGGAGGTGCTTAAAAAGATGATT 58.667 37.500 0.00 0.00 0.00 2.57
755 1603 6.489603 TGGGAGGTGCTTAAAAAGATGATTA 58.510 36.000 0.00 0.00 0.00 1.75
756 1604 6.951198 TGGGAGGTGCTTAAAAAGATGATTAA 59.049 34.615 0.00 0.00 0.00 1.40
757 1605 7.453126 TGGGAGGTGCTTAAAAAGATGATTAAA 59.547 33.333 0.00 0.00 0.00 1.52
758 1606 8.311109 GGGAGGTGCTTAAAAAGATGATTAAAA 58.689 33.333 0.00 0.00 0.00 1.52
759 1607 9.705290 GGAGGTGCTTAAAAAGATGATTAAAAA 57.295 29.630 0.00 0.00 0.00 1.94
792 1640 1.886886 TTTTCTGAAGCACCGGTACC 58.113 50.000 6.87 0.16 0.00 3.34
793 1641 1.053424 TTTCTGAAGCACCGGTACCT 58.947 50.000 6.87 3.46 0.00 3.08
794 1642 1.927487 TTCTGAAGCACCGGTACCTA 58.073 50.000 6.87 0.00 0.00 3.08
795 1643 2.154567 TCTGAAGCACCGGTACCTAT 57.845 50.000 6.87 0.00 0.00 2.57
796 1644 2.463752 TCTGAAGCACCGGTACCTATT 58.536 47.619 6.87 0.00 0.00 1.73
797 1645 2.835764 TCTGAAGCACCGGTACCTATTT 59.164 45.455 6.87 0.00 0.00 1.40
798 1646 3.118884 TCTGAAGCACCGGTACCTATTTC 60.119 47.826 6.87 1.77 0.00 2.17
799 1647 2.835764 TGAAGCACCGGTACCTATTTCT 59.164 45.455 6.87 0.00 0.00 2.52
800 1648 4.025360 TGAAGCACCGGTACCTATTTCTA 58.975 43.478 6.87 0.00 0.00 2.10
801 1649 4.652421 TGAAGCACCGGTACCTATTTCTAT 59.348 41.667 6.87 0.00 0.00 1.98
802 1650 5.834742 TGAAGCACCGGTACCTATTTCTATA 59.165 40.000 6.87 0.00 0.00 1.31
803 1651 5.979288 AGCACCGGTACCTATTTCTATAG 57.021 43.478 6.87 0.00 34.67 1.31
804 1652 5.638133 AGCACCGGTACCTATTTCTATAGA 58.362 41.667 6.87 0.00 36.62 1.98
805 1653 6.073314 AGCACCGGTACCTATTTCTATAGAA 58.927 40.000 6.87 11.24 36.62 2.10
806 1654 6.208994 AGCACCGGTACCTATTTCTATAGAAG 59.791 42.308 6.87 6.60 36.62 2.85
807 1655 6.208204 GCACCGGTACCTATTTCTATAGAAGA 59.792 42.308 6.87 7.05 36.62 2.87
808 1656 7.575343 GCACCGGTACCTATTTCTATAGAAGAG 60.575 44.444 6.87 14.87 36.62 2.85
809 1657 7.664731 CACCGGTACCTATTTCTATAGAAGAGA 59.335 40.741 20.34 7.64 36.62 3.10
810 1658 7.665145 ACCGGTACCTATTTCTATAGAAGAGAC 59.335 40.741 20.34 14.07 36.62 3.36
811 1659 7.148440 CCGGTACCTATTTCTATAGAAGAGACG 60.148 44.444 20.34 17.67 36.62 4.18
812 1660 7.529158 GGTACCTATTTCTATAGAAGAGACGC 58.471 42.308 20.34 12.52 36.62 5.19
813 1661 7.391275 GGTACCTATTTCTATAGAAGAGACGCT 59.609 40.741 20.34 5.67 36.62 5.07
814 1662 7.826918 ACCTATTTCTATAGAAGAGACGCTT 57.173 36.000 20.34 0.00 40.25 4.68
815 1663 8.921353 ACCTATTTCTATAGAAGAGACGCTTA 57.079 34.615 20.34 4.68 36.83 3.09
816 1664 9.005777 ACCTATTTCTATAGAAGAGACGCTTAG 57.994 37.037 20.34 11.23 36.83 2.18
817 1665 9.005777 CCTATTTCTATAGAAGAGACGCTTAGT 57.994 37.037 20.34 0.00 36.83 2.24
822 1670 8.344098 TTCTATAGAAGAGACGCTTAGTTAAGC 58.656 37.037 11.24 12.72 44.03 3.09
833 1681 4.715527 CTTAGTTAAGCGTCTACCCTGT 57.284 45.455 0.00 0.00 0.00 4.00
834 1682 5.824904 CTTAGTTAAGCGTCTACCCTGTA 57.175 43.478 0.00 0.00 0.00 2.74
835 1683 6.388435 CTTAGTTAAGCGTCTACCCTGTAT 57.612 41.667 0.00 0.00 0.00 2.29
836 1684 7.502120 CTTAGTTAAGCGTCTACCCTGTATA 57.498 40.000 0.00 0.00 0.00 1.47
837 1685 7.880160 TTAGTTAAGCGTCTACCCTGTATAA 57.120 36.000 0.00 0.00 0.00 0.98
838 1686 6.780457 AGTTAAGCGTCTACCCTGTATAAA 57.220 37.500 0.00 0.00 0.00 1.40
839 1687 6.803642 AGTTAAGCGTCTACCCTGTATAAAG 58.196 40.000 0.00 0.00 0.00 1.85
840 1688 6.604795 AGTTAAGCGTCTACCCTGTATAAAGA 59.395 38.462 0.00 0.00 0.00 2.52
841 1689 5.927281 AAGCGTCTACCCTGTATAAAGAA 57.073 39.130 0.00 0.00 0.00 2.52
842 1690 5.927281 AGCGTCTACCCTGTATAAAGAAA 57.073 39.130 0.00 0.00 0.00 2.52
843 1691 5.658468 AGCGTCTACCCTGTATAAAGAAAC 58.342 41.667 0.00 0.00 0.00 2.78
844 1692 5.186409 AGCGTCTACCCTGTATAAAGAAACA 59.814 40.000 0.00 0.00 0.00 2.83
845 1693 5.290400 GCGTCTACCCTGTATAAAGAAACAC 59.710 44.000 0.00 0.00 0.00 3.32
846 1694 6.628185 CGTCTACCCTGTATAAAGAAACACT 58.372 40.000 0.00 0.00 0.00 3.55
847 1695 6.530534 CGTCTACCCTGTATAAAGAAACACTG 59.469 42.308 0.00 0.00 0.00 3.66
848 1696 7.576287 CGTCTACCCTGTATAAAGAAACACTGA 60.576 40.741 0.00 0.00 0.00 3.41
849 1697 8.258708 GTCTACCCTGTATAAAGAAACACTGAT 58.741 37.037 0.00 0.00 0.00 2.90
850 1698 8.258007 TCTACCCTGTATAAAGAAACACTGATG 58.742 37.037 0.00 0.00 0.00 3.07
851 1699 5.648092 ACCCTGTATAAAGAAACACTGATGC 59.352 40.000 0.00 0.00 0.00 3.91
852 1700 5.882557 CCCTGTATAAAGAAACACTGATGCT 59.117 40.000 0.00 0.00 0.00 3.79
853 1701 6.375455 CCCTGTATAAAGAAACACTGATGCTT 59.625 38.462 0.00 0.00 0.00 3.91
854 1702 7.552687 CCCTGTATAAAGAAACACTGATGCTTA 59.447 37.037 0.00 0.00 0.00 3.09
855 1703 8.946085 CCTGTATAAAGAAACACTGATGCTTAA 58.054 33.333 0.00 0.00 0.00 1.85
856 1704 9.979270 CTGTATAAAGAAACACTGATGCTTAAG 57.021 33.333 0.00 0.00 0.00 1.85
857 1705 8.946085 TGTATAAAGAAACACTGATGCTTAAGG 58.054 33.333 4.29 0.00 0.00 2.69
858 1706 9.162764 GTATAAAGAAACACTGATGCTTAAGGA 57.837 33.333 4.29 0.78 0.00 3.36
859 1707 6.959639 AAAGAAACACTGATGCTTAAGGAA 57.040 33.333 0.00 0.00 0.00 3.36
860 1708 6.959639 AAGAAACACTGATGCTTAAGGAAA 57.040 33.333 0.00 0.00 0.00 3.13
861 1709 6.566197 AGAAACACTGATGCTTAAGGAAAG 57.434 37.500 0.00 4.71 38.32 2.62
862 1710 6.064717 AGAAACACTGATGCTTAAGGAAAGT 58.935 36.000 0.00 5.36 37.53 2.66
863 1711 5.948992 AACACTGATGCTTAAGGAAAGTC 57.051 39.130 11.29 1.76 37.53 3.01
864 1712 5.234466 ACACTGATGCTTAAGGAAAGTCT 57.766 39.130 11.29 0.47 37.53 3.24
865 1713 4.999950 ACACTGATGCTTAAGGAAAGTCTG 59.000 41.667 11.29 6.95 37.53 3.51
866 1714 4.394300 CACTGATGCTTAAGGAAAGTCTGG 59.606 45.833 11.29 0.70 37.53 3.86
867 1715 4.042187 ACTGATGCTTAAGGAAAGTCTGGT 59.958 41.667 0.00 0.00 37.53 4.00
868 1716 4.985538 TGATGCTTAAGGAAAGTCTGGTT 58.014 39.130 0.00 0.00 37.53 3.67
869 1717 5.385198 TGATGCTTAAGGAAAGTCTGGTTT 58.615 37.500 0.00 0.00 37.53 3.27
870 1718 6.539173 TGATGCTTAAGGAAAGTCTGGTTTA 58.461 36.000 0.00 0.00 37.53 2.01
871 1719 7.175104 TGATGCTTAAGGAAAGTCTGGTTTAT 58.825 34.615 0.00 0.00 37.53 1.40
872 1720 7.669722 TGATGCTTAAGGAAAGTCTGGTTTATT 59.330 33.333 0.00 0.00 37.53 1.40
873 1721 7.833285 TGCTTAAGGAAAGTCTGGTTTATTT 57.167 32.000 4.29 0.00 37.53 1.40
874 1722 8.245195 TGCTTAAGGAAAGTCTGGTTTATTTT 57.755 30.769 4.29 0.00 37.53 1.82
875 1723 8.700973 TGCTTAAGGAAAGTCTGGTTTATTTTT 58.299 29.630 4.29 0.00 37.53 1.94
876 1724 9.193133 GCTTAAGGAAAGTCTGGTTTATTTTTC 57.807 33.333 4.29 0.00 37.53 2.29
881 1729 8.577296 AGGAAAGTCTGGTTTATTTTTCTAAGC 58.423 33.333 0.00 0.00 0.00 3.09
882 1730 8.357402 GGAAAGTCTGGTTTATTTTTCTAAGCA 58.643 33.333 0.00 0.00 0.00 3.91
883 1731 9.914131 GAAAGTCTGGTTTATTTTTCTAAGCAT 57.086 29.630 0.00 0.00 0.00 3.79
884 1732 9.914131 AAAGTCTGGTTTATTTTTCTAAGCATC 57.086 29.630 0.00 0.00 0.00 3.91
885 1733 8.870075 AGTCTGGTTTATTTTTCTAAGCATCT 57.130 30.769 0.00 0.00 0.00 2.90
886 1734 9.301897 AGTCTGGTTTATTTTTCTAAGCATCTT 57.698 29.630 0.00 0.00 0.00 2.40
887 1735 9.914131 GTCTGGTTTATTTTTCTAAGCATCTTT 57.086 29.630 0.00 0.00 0.00 2.52
897 1745 7.559590 TTTCTAAGCATCTTTCTAAGCATCC 57.440 36.000 0.00 0.00 0.00 3.51
898 1746 6.491714 TCTAAGCATCTTTCTAAGCATCCT 57.508 37.500 0.00 0.00 0.00 3.24
899 1747 6.520272 TCTAAGCATCTTTCTAAGCATCCTC 58.480 40.000 0.00 0.00 0.00 3.71
900 1748 4.084011 AGCATCTTTCTAAGCATCCTCC 57.916 45.455 0.00 0.00 0.00 4.30
901 1749 2.805099 GCATCTTTCTAAGCATCCTCCG 59.195 50.000 0.00 0.00 0.00 4.63
902 1750 3.493350 GCATCTTTCTAAGCATCCTCCGA 60.493 47.826 0.00 0.00 0.00 4.55
903 1751 4.802248 GCATCTTTCTAAGCATCCTCCGAT 60.802 45.833 0.00 0.00 0.00 4.18
904 1752 5.303971 CATCTTTCTAAGCATCCTCCGATT 58.696 41.667 0.00 0.00 0.00 3.34
905 1753 4.697514 TCTTTCTAAGCATCCTCCGATTG 58.302 43.478 0.00 0.00 0.00 2.67
906 1754 4.162320 TCTTTCTAAGCATCCTCCGATTGT 59.838 41.667 0.00 0.00 0.00 2.71
907 1755 5.362717 TCTTTCTAAGCATCCTCCGATTGTA 59.637 40.000 0.00 0.00 0.00 2.41
908 1756 5.808366 TTCTAAGCATCCTCCGATTGTAT 57.192 39.130 0.00 0.00 0.00 2.29
909 1757 6.911250 TTCTAAGCATCCTCCGATTGTATA 57.089 37.500 0.00 0.00 0.00 1.47
910 1758 6.911250 TCTAAGCATCCTCCGATTGTATAA 57.089 37.500 0.00 0.00 0.00 0.98
911 1759 6.925211 TCTAAGCATCCTCCGATTGTATAAG 58.075 40.000 0.00 0.00 0.00 1.73
912 1760 4.543590 AGCATCCTCCGATTGTATAAGG 57.456 45.455 0.00 0.00 0.00 2.69
913 1761 3.003480 GCATCCTCCGATTGTATAAGGC 58.997 50.000 0.00 0.00 0.00 4.35
956 1805 1.691976 CCAAAACCCTTGTTCCCCTTC 59.308 52.381 0.00 0.00 32.15 3.46
1042 1895 4.397348 CCTGCGGCAAGGTAAACT 57.603 55.556 3.44 0.00 32.17 2.66
1054 1907 1.203570 AGGTAAACTCCCATCACCCCT 60.204 52.381 0.00 0.00 0.00 4.79
1055 1908 1.212195 GGTAAACTCCCATCACCCCTC 59.788 57.143 0.00 0.00 0.00 4.30
1057 1910 0.477597 AAACTCCCATCACCCCTCCA 60.478 55.000 0.00 0.00 0.00 3.86
1058 1911 0.253820 AACTCCCATCACCCCTCCAT 60.254 55.000 0.00 0.00 0.00 3.41
1069 2187 1.000896 CCCTCCATCCACAACACCC 60.001 63.158 0.00 0.00 0.00 4.61
1169 2287 2.027100 CCTCTTTTCGCTAGGGGTTTCT 60.027 50.000 6.99 0.00 0.00 2.52
1286 2406 7.402071 TCTTCTTCTAGGTTTATGTGGTGGTAT 59.598 37.037 0.00 0.00 0.00 2.73
1287 2407 6.884832 TCTTCTAGGTTTATGTGGTGGTATG 58.115 40.000 0.00 0.00 0.00 2.39
1291 2411 4.270008 AGGTTTATGTGGTGGTATGCTTC 58.730 43.478 0.00 0.00 0.00 3.86
1309 2430 8.982685 GTATGCTTCAAGATTTTCTCATCGATA 58.017 33.333 0.00 0.00 0.00 2.92
1371 2493 4.095036 GCTAGCTGTTTGTACCCAAGATTC 59.905 45.833 7.70 0.00 0.00 2.52
1395 2517 2.806244 CACTAGGGTGTAGTTGTTGTGC 59.194 50.000 0.00 0.00 38.54 4.57
1416 2553 3.425193 GCGGCACAACAATTTTTACTGAG 59.575 43.478 0.00 0.00 0.00 3.35
1526 2666 9.388506 TGCCTTTTATCTAAAGAAAGAGATCAG 57.611 33.333 0.00 0.00 45.00 2.90
1620 2760 1.749634 CCGACTACACTGAGGGGTAAG 59.250 57.143 0.00 0.00 0.00 2.34
1710 2853 1.546029 GTTTTGGTGGATGAGGCCTTC 59.454 52.381 6.77 0.00 0.00 3.46
1798 2941 7.582242 ACTTCTATGTGAGGAAGTTATGCACAT 60.582 37.037 16.38 16.38 46.55 3.21
1886 3029 5.411977 GCAGACCTGATCCATAATGAATGAG 59.588 44.000 0.47 0.00 37.86 2.90
1965 3111 3.191371 GTGGTGCTTCCCTGTTTTAGATG 59.809 47.826 0.00 0.00 34.77 2.90
2028 3174 0.392193 GACTGGGATGTGTGGAGCAG 60.392 60.000 0.00 0.00 0.00 4.24
2087 3233 8.023021 AGTCTGGATGATAGTTGCTATGTTTA 57.977 34.615 0.00 0.00 0.00 2.01
2151 3319 6.388435 AACTAGGTACTTAAGAGTATGGCG 57.612 41.667 10.09 0.00 40.33 5.69
2154 3322 3.383825 AGGTACTTAAGAGTATGGCGGTG 59.616 47.826 10.09 0.00 40.33 4.94
2177 3345 7.148457 GGTGTACTAATCTTTGTAGTCTTTGCC 60.148 40.741 0.00 0.00 33.80 4.52
2211 3379 3.658757 TTCACCTTTTTAGCCATGTGC 57.341 42.857 0.00 0.00 41.71 4.57
2214 3382 2.035704 CACCTTTTTAGCCATGTGCACA 59.964 45.455 24.08 24.08 44.83 4.57
2375 3552 3.128764 TGTCTGACTTAGCGAGGTACATG 59.871 47.826 9.51 0.00 0.00 3.21
2416 3594 7.966812 TGTCATCAGATTAGCCATATGTACTT 58.033 34.615 1.24 0.00 0.00 2.24
2417 3595 7.874528 TGTCATCAGATTAGCCATATGTACTTG 59.125 37.037 1.24 0.00 0.00 3.16
2418 3596 7.875041 GTCATCAGATTAGCCATATGTACTTGT 59.125 37.037 1.24 0.00 0.00 3.16
2422 3602 5.846714 AGATTAGCCATATGTACTTGTCCCT 59.153 40.000 1.24 0.00 0.00 4.20
2437 3617 1.068741 GTCCCTTACTCTGCATACCGG 59.931 57.143 0.00 0.00 0.00 5.28
2483 4451 5.182950 TGTGTAATGGTATGCTGTTTCTTGG 59.817 40.000 0.00 0.00 0.00 3.61
2601 4593 2.670934 GTGTGGCTGTCTGGCTGG 60.671 66.667 4.91 0.00 42.34 4.85
2636 4628 5.775686 TCTGAAATGTTGGAATCTTTGCTG 58.224 37.500 0.00 0.00 0.00 4.41
2640 4632 4.612264 ATGTTGGAATCTTTGCTGCTTT 57.388 36.364 0.00 0.00 0.00 3.51
2693 4685 0.756815 CTTCCCCATGCTTAAGGCCC 60.757 60.000 0.00 0.00 40.92 5.80
2771 4763 7.824289 TGTCAATACAGTTCCTGGAAAATAGAG 59.176 37.037 11.40 0.00 35.51 2.43
3158 5175 1.339055 TGAACCCATTCTGCCTCGAAG 60.339 52.381 0.00 0.00 35.69 3.79
3188 5214 6.096141 TGTTCCTTTGTACTTTTCAAGATGCA 59.904 34.615 0.00 0.00 0.00 3.96
3220 5246 2.158682 TCAGTGCTTAGGAGGTGCAAAA 60.159 45.455 0.00 0.00 38.50 2.44
3223 5249 1.545582 TGCTTAGGAGGTGCAAAATGC 59.454 47.619 0.00 0.00 45.29 3.56
3295 5321 3.612860 GTGTGACCATGCGTTTCTACTAG 59.387 47.826 0.00 0.00 0.00 2.57
3296 5322 3.257375 TGTGACCATGCGTTTCTACTAGT 59.743 43.478 0.00 0.00 0.00 2.57
3297 5323 4.460034 TGTGACCATGCGTTTCTACTAGTA 59.540 41.667 1.89 1.89 0.00 1.82
3299 5325 6.040878 GTGACCATGCGTTTCTACTAGTAAT 58.959 40.000 3.76 0.00 0.00 1.89
3300 5326 7.148035 TGTGACCATGCGTTTCTACTAGTAATA 60.148 37.037 3.76 0.00 0.00 0.98
3301 5327 7.378995 GTGACCATGCGTTTCTACTAGTAATAG 59.621 40.741 3.76 0.00 0.00 1.73
3303 5329 7.649973 ACCATGCGTTTCTACTAGTAATAGAG 58.350 38.462 3.83 0.00 30.46 2.43
3603 5691 6.625362 TGATTTGTTTGTGACTGCTGTTAAA 58.375 32.000 0.00 0.00 0.00 1.52
3611 5699 9.243637 GTTTGTGACTGCTGTTAAATTGAATTA 57.756 29.630 0.00 0.00 0.00 1.40
3781 5869 4.160439 TGGTAGAGATGCTCTGTTTTCGAT 59.840 41.667 7.19 0.00 41.37 3.59
3825 5913 3.628942 TGCTGCATCCATAACATGTTCTC 59.371 43.478 15.85 0.00 0.00 2.87
3853 5944 5.248477 GGCCTAATCATACAATCCACCTCTA 59.752 44.000 0.00 0.00 0.00 2.43
3925 6020 0.249868 AGTTCACGCTGCTTAGCACA 60.250 50.000 1.39 0.00 33.79 4.57
3977 6072 8.667463 TGTATTTCTGTAATAGGCGTTTAAACC 58.333 33.333 12.66 5.64 29.44 3.27
4022 6117 8.875803 CATACACATCAATTTGAAAAATCCCTG 58.124 33.333 2.68 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 7.962441 TCTAGTGATGTAATTTGCTGGCTATA 58.038 34.615 0.00 0.00 0.00 1.31
14 15 6.382869 AATCTAGTGATGTAATTTGCTGGC 57.617 37.500 0.00 0.00 32.44 4.85
18 19 8.208718 TGGTGTAATCTAGTGATGTAATTTGC 57.791 34.615 0.00 0.00 32.44 3.68
42 43 7.646922 GCAATGAATAGCTACAGATTTTCCTTG 59.353 37.037 12.46 12.46 33.73 3.61
43 44 7.340232 TGCAATGAATAGCTACAGATTTTCCTT 59.660 33.333 0.00 0.00 0.00 3.36
64 65 5.976458 TCTGTTTCTTTGGAGTTTTGCAAT 58.024 33.333 0.00 0.00 34.44 3.56
65 66 5.398603 TCTGTTTCTTTGGAGTTTTGCAA 57.601 34.783 0.00 0.00 32.36 4.08
66 67 4.677779 GCTCTGTTTCTTTGGAGTTTTGCA 60.678 41.667 0.00 0.00 0.00 4.08
76 77 4.484236 TGTGTTTGTGCTCTGTTTCTTTG 58.516 39.130 0.00 0.00 0.00 2.77
77 78 4.782019 TGTGTTTGTGCTCTGTTTCTTT 57.218 36.364 0.00 0.00 0.00 2.52
99 101 1.134159 TGCAAGCAAATTTTGGGCTGT 60.134 42.857 10.96 0.00 38.04 4.40
110 112 1.032014 GGACCTTCACTGCAAGCAAA 58.968 50.000 0.00 0.00 37.60 3.68
183 189 1.818642 AGCCTGACAATGAAGTGAGC 58.181 50.000 0.00 0.00 0.00 4.26
187 193 5.363562 TCATCATAGCCTGACAATGAAGT 57.636 39.130 0.00 0.00 36.48 3.01
190 196 3.390311 AGCTCATCATAGCCTGACAATGA 59.610 43.478 0.00 0.00 43.86 2.57
197 203 2.522836 AACGAGCTCATCATAGCCTG 57.477 50.000 15.40 0.00 43.86 4.85
226 232 2.167861 GCTCCTCATCGTTGACGCC 61.168 63.158 0.00 0.00 39.60 5.68
233 239 3.579534 TCCTACTAAGCTCCTCATCGT 57.420 47.619 0.00 0.00 0.00 3.73
236 242 4.704540 CGATCATCCTACTAAGCTCCTCAT 59.295 45.833 0.00 0.00 0.00 2.90
246 252 0.538746 TGCCGCCGATCATCCTACTA 60.539 55.000 0.00 0.00 0.00 1.82
252 258 2.049156 TCGATGCCGCCGATCATC 60.049 61.111 8.57 8.57 36.60 2.92
253 259 2.048784 CTCGATGCCGCCGATCAT 60.049 61.111 0.00 0.00 35.35 2.45
254 260 4.950062 GCTCGATGCCGCCGATCA 62.950 66.667 0.00 0.00 35.35 2.92
260 266 4.873129 TTCTCCGCTCGATGCCGC 62.873 66.667 0.00 0.00 38.78 6.53
261 267 2.656651 CTTCTCCGCTCGATGCCG 60.657 66.667 0.00 0.00 38.78 5.69
263 269 2.202797 TGCTTCTCCGCTCGATGC 60.203 61.111 0.00 0.00 38.57 3.91
264 270 0.737367 TTGTGCTTCTCCGCTCGATG 60.737 55.000 0.00 0.00 0.00 3.84
265 271 0.737715 GTTGTGCTTCTCCGCTCGAT 60.738 55.000 0.00 0.00 0.00 3.59
277 326 0.667487 CGTCGTCTCCATGTTGTGCT 60.667 55.000 0.00 0.00 0.00 4.40
284 333 1.139734 CAGGGTCGTCGTCTCCATG 59.860 63.158 0.00 0.00 0.00 3.66
285 334 2.052690 CCAGGGTCGTCGTCTCCAT 61.053 63.158 0.00 0.00 0.00 3.41
286 335 2.675423 CCAGGGTCGTCGTCTCCA 60.675 66.667 0.00 0.00 0.00 3.86
330 380 1.078567 CCTCCAGCAGCACCTTCTC 60.079 63.158 0.00 0.00 0.00 2.87
339 389 1.025113 TACGTCGTCTCCTCCAGCAG 61.025 60.000 0.00 0.00 0.00 4.24
354 404 0.822164 CGAATCCTTCACCCCTACGT 59.178 55.000 0.00 0.00 0.00 3.57
358 408 0.839946 CCATCGAATCCTTCACCCCT 59.160 55.000 0.00 0.00 0.00 4.79
365 415 1.097547 CGCTTGCCCATCGAATCCTT 61.098 55.000 0.00 0.00 0.00 3.36
406 456 2.743928 CACTTCTCACCGGCAGCC 60.744 66.667 0.00 0.00 0.00 4.85
432 482 2.899044 CGATCTCCTCTCGACCCGC 61.899 68.421 0.00 0.00 38.38 6.13
440 490 5.496556 CTCCTGATACATACGATCTCCTCT 58.503 45.833 0.00 0.00 0.00 3.69
448 498 1.961394 GGGTGCTCCTGATACATACGA 59.039 52.381 4.53 0.00 0.00 3.43
451 501 0.679505 GCGGGTGCTCCTGATACATA 59.320 55.000 17.90 0.00 42.46 2.29
453 503 2.900273 GCGGGTGCTCCTGATACA 59.100 61.111 17.90 0.00 42.46 2.29
485 535 3.091545 ACAAATTGGGCCTATCACACAG 58.908 45.455 4.53 0.00 0.00 3.66
492 542 4.381505 CGCAAACTAACAAATTGGGCCTAT 60.382 41.667 4.53 0.00 31.64 2.57
515 565 4.270325 GCACCACTCAAATCCTCGTATTAC 59.730 45.833 0.00 0.00 0.00 1.89
519 569 1.403647 CGCACCACTCAAATCCTCGTA 60.404 52.381 0.00 0.00 0.00 3.43
531 581 1.607251 GCTAACTACCAACGCACCACT 60.607 52.381 0.00 0.00 0.00 4.00
533 583 0.682852 AGCTAACTACCAACGCACCA 59.317 50.000 0.00 0.00 0.00 4.17
534 584 1.804601 AAGCTAACTACCAACGCACC 58.195 50.000 0.00 0.00 0.00 5.01
535 585 5.809051 ACTTATAAGCTAACTACCAACGCAC 59.191 40.000 12.54 0.00 0.00 5.34
536 586 5.969423 ACTTATAAGCTAACTACCAACGCA 58.031 37.500 12.54 0.00 0.00 5.24
537 587 6.702897 CAACTTATAAGCTAACTACCAACGC 58.297 40.000 12.54 0.00 0.00 4.84
538 588 6.507456 CGCAACTTATAAGCTAACTACCAACG 60.507 42.308 12.54 0.00 0.00 4.10
539 589 6.532657 TCGCAACTTATAAGCTAACTACCAAC 59.467 38.462 12.54 0.00 0.00 3.77
540 590 6.632909 TCGCAACTTATAAGCTAACTACCAA 58.367 36.000 12.54 0.00 0.00 3.67
549 599 6.494893 TCACAAAATCGCAACTTATAAGCT 57.505 33.333 12.54 0.00 0.00 3.74
572 622 9.674068 TTTACACCAGCTTTTAAGGAAATTTTT 57.326 25.926 0.00 0.00 0.00 1.94
589 639 8.483758 AGGGACACTTATAATAGTTTACACCAG 58.516 37.037 0.00 0.00 0.00 4.00
605 655 6.485313 CACAACACAATCTTTAGGGACACTTA 59.515 38.462 0.00 0.00 0.00 2.24
608 658 4.578928 ACACAACACAATCTTTAGGGACAC 59.421 41.667 0.00 0.00 0.00 3.67
610 660 4.556699 GCACACAACACAATCTTTAGGGAC 60.557 45.833 0.00 0.00 0.00 4.46
611 661 3.568007 GCACACAACACAATCTTTAGGGA 59.432 43.478 0.00 0.00 0.00 4.20
613 663 4.566545 TGCACACAACACAATCTTTAGG 57.433 40.909 0.00 0.00 0.00 2.69
615 665 6.475076 GTGAATTGCACACAACACAATCTTTA 59.525 34.615 1.31 0.00 46.91 1.85
674 1520 6.183360 CGTAGGAAGGACAATGAGATGTTCTA 60.183 42.308 0.00 0.00 38.22 2.10
675 1521 5.394663 CGTAGGAAGGACAATGAGATGTTCT 60.395 44.000 0.00 0.00 41.00 3.01
697 1545 4.061596 CTGAGAGAAAAGAAAGGCTTCGT 58.938 43.478 0.00 0.00 35.24 3.85
714 1562 6.013379 CACCTCCCATTATATAAAGCCTGAGA 60.013 42.308 0.00 0.00 0.00 3.27
715 1563 6.176183 CACCTCCCATTATATAAAGCCTGAG 58.824 44.000 0.00 2.22 0.00 3.35
717 1565 4.702131 GCACCTCCCATTATATAAAGCCTG 59.298 45.833 0.00 0.00 0.00 4.85
718 1566 4.603610 AGCACCTCCCATTATATAAAGCCT 59.396 41.667 0.00 0.00 0.00 4.58
719 1567 4.923415 AGCACCTCCCATTATATAAAGCC 58.077 43.478 0.00 0.00 0.00 4.35
720 1568 7.996098 TTAAGCACCTCCCATTATATAAAGC 57.004 36.000 0.00 0.00 0.00 3.51
725 1573 9.082313 CATCTTTTTAAGCACCTCCCATTATAT 57.918 33.333 0.00 0.00 0.00 0.86
726 1574 8.278639 TCATCTTTTTAAGCACCTCCCATTATA 58.721 33.333 0.00 0.00 0.00 0.98
727 1575 7.125391 TCATCTTTTTAAGCACCTCCCATTAT 58.875 34.615 0.00 0.00 0.00 1.28
728 1576 6.489603 TCATCTTTTTAAGCACCTCCCATTA 58.510 36.000 0.00 0.00 0.00 1.90
729 1577 5.332743 TCATCTTTTTAAGCACCTCCCATT 58.667 37.500 0.00 0.00 0.00 3.16
730 1578 4.934356 TCATCTTTTTAAGCACCTCCCAT 58.066 39.130 0.00 0.00 0.00 4.00
731 1579 4.380843 TCATCTTTTTAAGCACCTCCCA 57.619 40.909 0.00 0.00 0.00 4.37
732 1580 5.921962 AATCATCTTTTTAAGCACCTCCC 57.078 39.130 0.00 0.00 0.00 4.30
733 1581 9.705290 TTTTTAATCATCTTTTTAAGCACCTCC 57.295 29.630 0.00 0.00 0.00 4.30
772 1620 2.158726 AGGTACCGGTGCTTCAGAAAAA 60.159 45.455 22.50 0.00 0.00 1.94
773 1621 1.418637 AGGTACCGGTGCTTCAGAAAA 59.581 47.619 22.50 0.00 0.00 2.29
774 1622 1.053424 AGGTACCGGTGCTTCAGAAA 58.947 50.000 22.50 0.00 0.00 2.52
775 1623 1.927487 TAGGTACCGGTGCTTCAGAA 58.073 50.000 22.50 0.00 0.00 3.02
776 1624 2.154567 ATAGGTACCGGTGCTTCAGA 57.845 50.000 22.50 0.00 0.00 3.27
777 1625 2.981859 AATAGGTACCGGTGCTTCAG 57.018 50.000 22.50 0.00 0.00 3.02
778 1626 2.835764 AGAAATAGGTACCGGTGCTTCA 59.164 45.455 22.50 8.15 0.00 3.02
779 1627 3.538634 AGAAATAGGTACCGGTGCTTC 57.461 47.619 22.50 16.89 0.00 3.86
780 1628 6.073314 TCTATAGAAATAGGTACCGGTGCTT 58.927 40.000 22.50 17.73 36.49 3.91
781 1629 5.638133 TCTATAGAAATAGGTACCGGTGCT 58.362 41.667 22.50 10.83 36.49 4.40
782 1630 5.972107 TCTATAGAAATAGGTACCGGTGC 57.028 43.478 19.93 17.43 36.49 5.01
783 1631 7.664731 TCTCTTCTATAGAAATAGGTACCGGTG 59.335 40.741 19.93 0.00 36.49 4.94
784 1632 7.665145 GTCTCTTCTATAGAAATAGGTACCGGT 59.335 40.741 13.98 13.98 36.49 5.28
785 1633 7.148440 CGTCTCTTCTATAGAAATAGGTACCGG 60.148 44.444 15.85 0.00 36.49 5.28
786 1634 7.623925 GCGTCTCTTCTATAGAAATAGGTACCG 60.624 44.444 15.85 14.75 36.49 4.02
787 1635 7.391275 AGCGTCTCTTCTATAGAAATAGGTACC 59.609 40.741 15.85 2.73 36.49 3.34
788 1636 8.326680 AGCGTCTCTTCTATAGAAATAGGTAC 57.673 38.462 15.85 10.07 36.49 3.34
789 1637 8.921353 AAGCGTCTCTTCTATAGAAATAGGTA 57.079 34.615 15.85 0.57 36.49 3.08
790 1638 7.826918 AAGCGTCTCTTCTATAGAAATAGGT 57.173 36.000 15.85 8.69 36.49 3.08
791 1639 9.005777 ACTAAGCGTCTCTTCTATAGAAATAGG 57.994 37.037 15.85 10.43 36.49 2.57
812 1660 4.715527 ACAGGGTAGACGCTTAACTAAG 57.284 45.455 0.00 0.00 37.00 2.18
813 1661 7.880160 TTATACAGGGTAGACGCTTAACTAA 57.120 36.000 0.00 0.00 37.00 2.24
814 1662 7.775093 TCTTTATACAGGGTAGACGCTTAACTA 59.225 37.037 0.00 0.00 37.00 2.24
815 1663 6.604795 TCTTTATACAGGGTAGACGCTTAACT 59.395 38.462 0.00 0.00 37.00 2.24
816 1664 6.799512 TCTTTATACAGGGTAGACGCTTAAC 58.200 40.000 0.00 0.00 37.00 2.01
817 1665 7.408756 TTCTTTATACAGGGTAGACGCTTAA 57.591 36.000 0.00 0.00 37.00 1.85
818 1666 7.093814 TGTTTCTTTATACAGGGTAGACGCTTA 60.094 37.037 0.00 0.00 37.00 3.09
819 1667 5.927281 TTCTTTATACAGGGTAGACGCTT 57.073 39.130 0.00 0.00 37.00 4.68
820 1668 5.186409 TGTTTCTTTATACAGGGTAGACGCT 59.814 40.000 0.00 0.00 39.95 5.07
821 1669 5.290400 GTGTTTCTTTATACAGGGTAGACGC 59.710 44.000 0.00 0.00 0.00 5.19
822 1670 6.530534 CAGTGTTTCTTTATACAGGGTAGACG 59.469 42.308 0.00 0.00 0.00 4.18
823 1671 7.609056 TCAGTGTTTCTTTATACAGGGTAGAC 58.391 38.462 0.00 0.00 0.00 2.59
824 1672 7.786046 TCAGTGTTTCTTTATACAGGGTAGA 57.214 36.000 0.00 0.00 0.00 2.59
825 1673 7.011482 GCATCAGTGTTTCTTTATACAGGGTAG 59.989 40.741 0.00 0.00 0.00 3.18
826 1674 6.821665 GCATCAGTGTTTCTTTATACAGGGTA 59.178 38.462 0.00 0.00 0.00 3.69
827 1675 5.648092 GCATCAGTGTTTCTTTATACAGGGT 59.352 40.000 0.00 0.00 0.00 4.34
828 1676 5.882557 AGCATCAGTGTTTCTTTATACAGGG 59.117 40.000 0.00 0.00 0.00 4.45
829 1677 6.992063 AGCATCAGTGTTTCTTTATACAGG 57.008 37.500 0.00 0.00 0.00 4.00
830 1678 9.979270 CTTAAGCATCAGTGTTTCTTTATACAG 57.021 33.333 0.00 0.00 30.94 2.74
831 1679 8.946085 CCTTAAGCATCAGTGTTTCTTTATACA 58.054 33.333 0.00 0.00 30.94 2.29
832 1680 9.162764 TCCTTAAGCATCAGTGTTTCTTTATAC 57.837 33.333 0.00 0.00 30.94 1.47
833 1681 9.733556 TTCCTTAAGCATCAGTGTTTCTTTATA 57.266 29.630 0.00 0.00 30.94 0.98
834 1682 8.635765 TTCCTTAAGCATCAGTGTTTCTTTAT 57.364 30.769 0.00 0.00 30.94 1.40
835 1683 8.458573 TTTCCTTAAGCATCAGTGTTTCTTTA 57.541 30.769 0.00 0.00 30.94 1.85
836 1684 6.959639 TTCCTTAAGCATCAGTGTTTCTTT 57.040 33.333 0.00 0.00 30.94 2.52
837 1685 6.547510 ACTTTCCTTAAGCATCAGTGTTTCTT 59.452 34.615 0.00 0.00 37.37 2.52
838 1686 6.064717 ACTTTCCTTAAGCATCAGTGTTTCT 58.935 36.000 0.00 0.00 37.37 2.52
839 1687 6.205658 AGACTTTCCTTAAGCATCAGTGTTTC 59.794 38.462 0.00 0.00 37.37 2.78
840 1688 6.016777 CAGACTTTCCTTAAGCATCAGTGTTT 60.017 38.462 0.00 0.00 37.37 2.83
841 1689 5.471456 CAGACTTTCCTTAAGCATCAGTGTT 59.529 40.000 0.00 0.00 37.37 3.32
842 1690 4.999950 CAGACTTTCCTTAAGCATCAGTGT 59.000 41.667 0.00 0.00 37.37 3.55
843 1691 4.394300 CCAGACTTTCCTTAAGCATCAGTG 59.606 45.833 0.00 0.00 37.37 3.66
844 1692 4.042187 ACCAGACTTTCCTTAAGCATCAGT 59.958 41.667 0.00 0.00 37.37 3.41
845 1693 4.583871 ACCAGACTTTCCTTAAGCATCAG 58.416 43.478 0.00 0.00 37.37 2.90
846 1694 4.640771 ACCAGACTTTCCTTAAGCATCA 57.359 40.909 0.00 0.00 37.37 3.07
847 1695 5.966742 AAACCAGACTTTCCTTAAGCATC 57.033 39.130 0.00 0.00 37.37 3.91
848 1696 8.422577 AAATAAACCAGACTTTCCTTAAGCAT 57.577 30.769 0.00 0.00 37.37 3.79
849 1697 7.833285 AAATAAACCAGACTTTCCTTAAGCA 57.167 32.000 0.00 0.00 37.37 3.91
850 1698 9.193133 GAAAAATAAACCAGACTTTCCTTAAGC 57.807 33.333 0.00 0.00 37.37 3.09
855 1703 8.577296 GCTTAGAAAAATAAACCAGACTTTCCT 58.423 33.333 0.00 0.00 0.00 3.36
856 1704 8.357402 TGCTTAGAAAAATAAACCAGACTTTCC 58.643 33.333 0.00 0.00 0.00 3.13
857 1705 9.914131 ATGCTTAGAAAAATAAACCAGACTTTC 57.086 29.630 0.00 0.00 0.00 2.62
858 1706 9.914131 GATGCTTAGAAAAATAAACCAGACTTT 57.086 29.630 0.00 0.00 0.00 2.66
859 1707 9.301897 AGATGCTTAGAAAAATAAACCAGACTT 57.698 29.630 0.00 0.00 0.00 3.01
860 1708 8.870075 AGATGCTTAGAAAAATAAACCAGACT 57.130 30.769 0.00 0.00 0.00 3.24
861 1709 9.914131 AAAGATGCTTAGAAAAATAAACCAGAC 57.086 29.630 0.00 0.00 0.00 3.51
871 1719 8.462016 GGATGCTTAGAAAGATGCTTAGAAAAA 58.538 33.333 0.00 0.00 0.00 1.94
872 1720 7.831193 AGGATGCTTAGAAAGATGCTTAGAAAA 59.169 33.333 0.00 0.00 0.00 2.29
873 1721 7.341805 AGGATGCTTAGAAAGATGCTTAGAAA 58.658 34.615 0.00 0.00 0.00 2.52
874 1722 6.893583 AGGATGCTTAGAAAGATGCTTAGAA 58.106 36.000 0.00 0.00 0.00 2.10
875 1723 6.463614 GGAGGATGCTTAGAAAGATGCTTAGA 60.464 42.308 0.00 0.00 0.00 2.10
876 1724 5.700373 GGAGGATGCTTAGAAAGATGCTTAG 59.300 44.000 0.00 0.00 0.00 2.18
877 1725 5.615289 GGAGGATGCTTAGAAAGATGCTTA 58.385 41.667 0.00 0.00 0.00 3.09
878 1726 4.459330 GGAGGATGCTTAGAAAGATGCTT 58.541 43.478 0.00 0.00 0.00 3.91
879 1727 3.494048 CGGAGGATGCTTAGAAAGATGCT 60.494 47.826 0.00 0.00 0.00 3.79
880 1728 2.805099 CGGAGGATGCTTAGAAAGATGC 59.195 50.000 0.00 0.00 0.00 3.91
881 1729 4.327982 TCGGAGGATGCTTAGAAAGATG 57.672 45.455 0.00 0.00 0.00 2.90
882 1730 5.163258 ACAATCGGAGGATGCTTAGAAAGAT 60.163 40.000 0.00 0.00 31.83 2.40
883 1731 4.162320 ACAATCGGAGGATGCTTAGAAAGA 59.838 41.667 0.00 0.00 31.83 2.52
884 1732 4.446371 ACAATCGGAGGATGCTTAGAAAG 58.554 43.478 0.00 0.00 31.83 2.62
885 1733 4.487714 ACAATCGGAGGATGCTTAGAAA 57.512 40.909 0.00 0.00 31.83 2.52
886 1734 5.808366 ATACAATCGGAGGATGCTTAGAA 57.192 39.130 0.00 0.00 31.83 2.10
887 1735 6.071334 CCTTATACAATCGGAGGATGCTTAGA 60.071 42.308 0.00 0.00 31.83 2.10
888 1736 6.102663 CCTTATACAATCGGAGGATGCTTAG 58.897 44.000 0.00 0.00 31.83 2.18
889 1737 5.568825 GCCTTATACAATCGGAGGATGCTTA 60.569 44.000 0.00 0.00 31.83 3.09
890 1738 4.804261 GCCTTATACAATCGGAGGATGCTT 60.804 45.833 0.00 0.00 31.83 3.91
891 1739 3.307059 GCCTTATACAATCGGAGGATGCT 60.307 47.826 0.00 0.00 31.83 3.79
892 1740 3.003480 GCCTTATACAATCGGAGGATGC 58.997 50.000 0.00 0.00 31.83 3.91
893 1741 3.261897 AGGCCTTATACAATCGGAGGATG 59.738 47.826 0.00 0.00 31.83 3.51
894 1742 3.515901 GAGGCCTTATACAATCGGAGGAT 59.484 47.826 6.77 0.00 0.00 3.24
895 1743 2.897969 GAGGCCTTATACAATCGGAGGA 59.102 50.000 6.77 0.00 0.00 3.71
896 1744 2.632996 TGAGGCCTTATACAATCGGAGG 59.367 50.000 6.77 0.00 0.00 4.30
897 1745 3.322254 AGTGAGGCCTTATACAATCGGAG 59.678 47.826 6.77 0.00 0.00 4.63
898 1746 3.069586 CAGTGAGGCCTTATACAATCGGA 59.930 47.826 6.77 0.00 0.00 4.55
899 1747 3.069586 TCAGTGAGGCCTTATACAATCGG 59.930 47.826 6.77 0.00 0.00 4.18
900 1748 4.051922 GTCAGTGAGGCCTTATACAATCG 58.948 47.826 6.77 0.00 0.00 3.34
901 1749 4.381411 GGTCAGTGAGGCCTTATACAATC 58.619 47.826 6.77 0.00 39.61 2.67
902 1750 3.136626 GGGTCAGTGAGGCCTTATACAAT 59.863 47.826 6.77 0.00 43.45 2.71
903 1751 2.504175 GGGTCAGTGAGGCCTTATACAA 59.496 50.000 6.77 0.00 43.45 2.41
904 1752 2.116238 GGGTCAGTGAGGCCTTATACA 58.884 52.381 6.77 0.00 43.45 2.29
905 1753 2.365941 GAGGGTCAGTGAGGCCTTATAC 59.634 54.545 6.77 7.21 43.45 1.47
906 1754 2.679082 GAGGGTCAGTGAGGCCTTATA 58.321 52.381 6.77 0.00 43.45 0.98
907 1755 1.501582 GAGGGTCAGTGAGGCCTTAT 58.498 55.000 6.77 0.00 43.45 1.73
908 1756 0.970937 CGAGGGTCAGTGAGGCCTTA 60.971 60.000 6.77 0.00 43.45 2.69
909 1757 2.286523 CGAGGGTCAGTGAGGCCTT 61.287 63.158 6.77 0.00 43.45 4.35
910 1758 2.681778 CGAGGGTCAGTGAGGCCT 60.682 66.667 3.86 3.86 43.45 5.19
911 1759 4.459089 GCGAGGGTCAGTGAGGCC 62.459 72.222 0.00 0.00 43.09 5.19
912 1760 4.459089 GGCGAGGGTCAGTGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
913 1761 2.232298 GAAGGCGAGGGTCAGTGAGG 62.232 65.000 0.00 0.00 0.00 3.86
1042 1895 1.385915 GGATGGAGGGGTGATGGGA 60.386 63.158 0.00 0.00 0.00 4.37
1054 1907 1.004628 CATGAGGGTGTTGTGGATGGA 59.995 52.381 0.00 0.00 0.00 3.41
1055 1908 1.272092 ACATGAGGGTGTTGTGGATGG 60.272 52.381 0.00 0.00 0.00 3.51
1057 1910 2.026262 GGTACATGAGGGTGTTGTGGAT 60.026 50.000 0.00 0.00 33.62 3.41
1058 1911 1.349688 GGTACATGAGGGTGTTGTGGA 59.650 52.381 0.00 0.00 33.62 4.02
1069 2187 3.379452 AGGAGGAGAAAGGGTACATGAG 58.621 50.000 0.00 0.00 0.00 2.90
1101 2219 2.156051 AACGAGAGGCACCGGAGAAC 62.156 60.000 9.46 0.00 0.00 3.01
1102 2220 1.874345 GAACGAGAGGCACCGGAGAA 61.874 60.000 9.46 0.00 0.00 2.87
1152 2270 2.037511 TCGAAGAAACCCCTAGCGAAAA 59.962 45.455 0.00 0.00 0.00 2.29
1169 2287 1.064296 GAGAGAGCGGCGAATCGAA 59.936 57.895 12.98 0.00 0.00 3.71
1286 2406 7.044181 AGTATCGATGAGAAAATCTTGAAGCA 58.956 34.615 8.54 0.00 0.00 3.91
1287 2407 7.437862 AGAGTATCGATGAGAAAATCTTGAAGC 59.562 37.037 8.54 0.00 42.67 3.86
1309 2430 8.553459 AAAACATCACTTGATTATTCGAGAGT 57.447 30.769 8.56 0.00 36.91 3.24
1344 2465 1.067071 GGGTACAAACAGCTAGCGACT 60.067 52.381 9.55 0.00 0.00 4.18
1395 2517 4.854399 TCTCAGTAAAAATTGTTGTGCCG 58.146 39.130 0.00 0.00 0.00 5.69
1526 2666 5.464168 AGCATACAAATTGAACTTGTGAGC 58.536 37.500 1.87 6.15 37.56 4.26
1809 2952 7.535599 CGTCACAAGATATACAGCATACTAGTG 59.464 40.741 5.39 0.00 0.00 2.74
1851 2994 0.732880 CAGGTCTGCTACGGTGTTCG 60.733 60.000 0.00 0.00 45.88 3.95
1886 3029 0.740737 ACACAGCCAGTTTTCAGTGC 59.259 50.000 0.00 0.00 0.00 4.40
1931 3077 2.320681 AGCACCACACTAGTAAGGGA 57.679 50.000 15.11 0.00 0.00 4.20
1965 3111 3.364664 GGCAAGTACAAGGCTTACGAAAC 60.365 47.826 0.00 0.00 0.00 2.78
2028 3174 7.822658 TGGTTTAACACTGGCATAATTCTAAC 58.177 34.615 0.00 0.00 0.00 2.34
2087 3233 4.007659 GGGAAAAACACGTCATAGGATGT 58.992 43.478 0.00 0.00 44.04 3.06
2151 3319 7.148457 GGCAAAGACTACAAAGATTAGTACACC 60.148 40.741 0.00 0.00 29.58 4.16
2154 3322 7.900782 TGGCAAAGACTACAAAGATTAGTAC 57.099 36.000 0.00 0.00 29.58 2.73
2211 3379 2.608090 CAGCATGCAGAGTATGAGTGTG 59.392 50.000 21.98 0.00 0.00 3.82
2214 3382 2.235650 ACACAGCATGCAGAGTATGAGT 59.764 45.455 21.98 9.91 42.53 3.41
2298 3468 9.453572 AAATTTACAGTTCATCATGAGCTTCTA 57.546 29.630 0.32 0.00 35.71 2.10
2357 3534 2.688446 CTCCATGTACCTCGCTAAGTCA 59.312 50.000 0.00 0.00 0.00 3.41
2416 3594 1.754803 CGGTATGCAGAGTAAGGGACA 59.245 52.381 0.00 0.00 0.00 4.02
2417 3595 1.068741 CCGGTATGCAGAGTAAGGGAC 59.931 57.143 0.00 0.00 0.00 4.46
2418 3596 1.342674 ACCGGTATGCAGAGTAAGGGA 60.343 52.381 4.49 0.00 0.00 4.20
2422 3602 2.563620 TGTCAACCGGTATGCAGAGTAA 59.436 45.455 8.00 0.00 0.00 2.24
2437 3617 9.195411 ACACAATAACATCATTTCATTGTCAAC 57.805 29.630 0.00 0.00 37.65 3.18
2467 3647 6.072175 TGTTCATTACCAAGAAACAGCATACC 60.072 38.462 0.00 0.00 0.00 2.73
2564 4548 4.525487 ACACTCAACGGTAGACTCCAATAA 59.475 41.667 0.00 0.00 0.00 1.40
2601 4593 2.365293 ACATTTCAGAAACCAAGCACCC 59.635 45.455 0.00 0.00 0.00 4.61
2897 4893 6.441274 ACAACATACAACAGCAGAAAGATTG 58.559 36.000 0.00 0.00 0.00 2.67
3158 5175 5.656480 TGAAAAGTACAAAGGAACAAAGGC 58.344 37.500 0.00 0.00 0.00 4.35
3188 5214 6.360370 TCCTAAGCACTGACATAAGAAACT 57.640 37.500 0.00 0.00 0.00 2.66
3220 5246 2.026822 ACTTCATTTCAGGACCTCGCAT 60.027 45.455 0.00 0.00 0.00 4.73
3223 5249 2.744202 CCAACTTCATTTCAGGACCTCG 59.256 50.000 0.00 0.00 0.00 4.63
3299 5325 8.755028 TGCATAGACTTGTTGGTTAATACTCTA 58.245 33.333 0.00 0.00 0.00 2.43
3300 5326 7.620880 TGCATAGACTTGTTGGTTAATACTCT 58.379 34.615 0.00 0.00 0.00 3.24
3301 5327 7.843490 TGCATAGACTTGTTGGTTAATACTC 57.157 36.000 0.00 0.00 0.00 2.59
3303 5329 8.893727 AGAATGCATAGACTTGTTGGTTAATAC 58.106 33.333 0.00 0.00 0.00 1.89
3424 5491 6.422100 GCATATCACTAGTGACGATTCAATGT 59.578 38.462 27.41 10.30 43.11 2.71
3603 5691 8.951614 AGTGGATGAATGGATGATAATTCAAT 57.048 30.769 6.99 0.00 43.86 2.57
3611 5699 5.359009 GTCAACAAGTGGATGAATGGATGAT 59.641 40.000 0.00 0.00 0.00 2.45
3781 5869 1.876799 CACCATAAACAAGCACGACCA 59.123 47.619 0.00 0.00 0.00 4.02
3825 5913 4.929808 GTGGATTGTATGATTAGGCCTACG 59.070 45.833 13.46 0.00 0.00 3.51
3853 5944 1.086696 CGCAGGTCAACGGAAATGAT 58.913 50.000 0.00 0.00 0.00 2.45
3945 6040 7.494211 ACGCCTATTACAGAAATACATGTACA 58.506 34.615 7.96 0.00 31.83 2.90
3966 6061 1.464608 GAACTACCCGGTTTAAACGCC 59.535 52.381 12.07 0.00 0.00 5.68
3977 6072 3.868757 TGTCTCTGATTGAACTACCCG 57.131 47.619 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.