Multiple sequence alignment - TraesCS5A01G114500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G114500 chr5A 100.000 5687 0 0 1 5687 229501982 229496296 0.000000e+00 10503.0
1 TraesCS5A01G114500 chr5A 100.000 35 0 0 5583 5617 457254313 457254347 1.320000e-06 65.8
2 TraesCS5A01G114500 chr5B 93.577 2678 74 33 508 3126 214127037 214129675 0.000000e+00 3903.0
3 TraesCS5A01G114500 chr5B 91.147 1299 48 12 3554 4801 214129685 214130967 0.000000e+00 1700.0
4 TraesCS5A01G114500 chr5B 96.995 366 9 1 4 367 214126571 214126936 1.050000e-171 614.0
5 TraesCS5A01G114500 chr5B 95.181 83 4 0 399 481 214127039 214126957 1.290000e-26 132.0
6 TraesCS5A01G114500 chr5B 94.231 52 2 1 364 414 446414460 446414511 1.700000e-10 78.7
7 TraesCS5A01G114500 chr5B 93.878 49 2 1 364 411 354511572 354511524 7.900000e-09 73.1
8 TraesCS5A01G114500 chr5B 97.143 35 1 0 474 508 419618856 419618890 6.150000e-05 60.2
9 TraesCS5A01G114500 chr5D 93.639 2657 62 44 507 3121 190495856 190498447 0.000000e+00 3871.0
10 TraesCS5A01G114500 chr5D 92.162 791 31 14 4095 4856 190498968 190499756 0.000000e+00 1088.0
11 TraesCS5A01G114500 chr5D 93.432 472 16 3 3554 4016 190498468 190498933 0.000000e+00 686.0
12 TraesCS5A01G114500 chr5D 97.268 366 8 1 4 367 190495391 190495756 2.250000e-173 619.0
13 TraesCS5A01G114500 chr5D 96.386 83 3 0 399 481 190495859 190495777 2.760000e-28 137.0
14 TraesCS5A01G114500 chr5D 92.683 82 5 1 4757 4838 190499946 190500026 3.600000e-22 117.0
15 TraesCS5A01G114500 chr2B 98.212 783 12 2 4907 5687 771168373 771167591 0.000000e+00 1367.0
16 TraesCS5A01G114500 chr2B 90.741 54 3 2 364 415 28377673 28377620 2.840000e-08 71.3
17 TraesCS5A01G114500 chr2B 89.655 58 3 3 364 419 620596717 620596661 2.840000e-08 71.3
18 TraesCS5A01G114500 chr1A 96.833 821 19 7 4872 5687 74755171 74754353 0.000000e+00 1365.0
19 TraesCS5A01G114500 chr1A 97.949 780 13 3 4911 5687 446717009 446716230 0.000000e+00 1349.0
20 TraesCS5A01G114500 chr1A 96.829 410 8 4 3135 3541 419038041 419037634 0.000000e+00 680.0
21 TraesCS5A01G114500 chr1A 96.333 409 9 4 3135 3541 499392534 499392938 0.000000e+00 667.0
22 TraesCS5A01G114500 chr4A 98.813 758 6 1 4930 5687 650405040 650404286 0.000000e+00 1347.0
23 TraesCS5A01G114500 chr4A 94.891 411 14 7 3135 3541 177620207 177619800 2.230000e-178 636.0
24 TraesCS5A01G114500 chr4A 91.411 163 13 1 5420 5581 715551249 715551411 7.420000e-54 222.0
25 TraesCS5A01G114500 chr4A 87.755 98 12 0 2763 2860 526641572 526641669 1.290000e-21 115.0
26 TraesCS5A01G114500 chr6A 98.681 758 10 0 4930 5687 317609286 317608529 0.000000e+00 1345.0
27 TraesCS5A01G114500 chr2A 98.677 756 9 1 4930 5685 41150209 41150963 0.000000e+00 1339.0
28 TraesCS5A01G114500 chr2A 96.829 410 8 5 3135 3541 442513810 442513403 0.000000e+00 680.0
29 TraesCS5A01G114500 chr2A 95.283 424 12 7 3121 3541 109327429 109327011 0.000000e+00 665.0
30 TraesCS5A01G114500 chr3B 97.497 759 16 1 4932 5687 245962455 245961697 0.000000e+00 1293.0
31 TraesCS5A01G114500 chr3B 87.209 86 1 10 4879 4964 43195672 43195747 7.850000e-14 89.8
32 TraesCS5A01G114500 chr3B 82.353 85 13 2 4885 4967 46487571 46487487 7.900000e-09 73.1
33 TraesCS5A01G114500 chr7A 96.585 410 10 4 3135 3542 567709966 567710373 0.000000e+00 676.0
34 TraesCS5A01G114500 chr7A 95.874 412 8 7 3135 3541 571941566 571941973 0.000000e+00 658.0
35 TraesCS5A01G114500 chr7A 91.847 417 29 4 4895 5307 232346883 232346468 1.370000e-160 577.0
36 TraesCS5A01G114500 chr7A 88.172 186 12 4 5420 5595 232346249 232346064 4.460000e-51 213.0
37 TraesCS5A01G114500 chr7A 94.643 56 3 0 5632 5687 457303893 457303838 2.820000e-13 87.9
38 TraesCS5A01G114500 chr3A 95.802 405 13 4 3140 3541 436452417 436452014 0.000000e+00 651.0
39 TraesCS5A01G114500 chr3A 95.157 413 14 6 3134 3541 213242173 213242584 0.000000e+00 647.0
40 TraesCS5A01G114500 chr3A 92.632 380 25 2 4930 5307 747649682 747649304 1.390000e-150 544.0
41 TraesCS5A01G114500 chr3A 91.329 173 14 1 5251 5423 265372793 265372622 9.530000e-58 235.0
42 TraesCS5A01G114500 chr3A 94.156 154 8 1 5270 5423 337498361 337498209 3.430000e-57 233.0
43 TraesCS5A01G114500 chr3A 100.000 35 0 0 5583 5617 531734602 531734636 1.320000e-06 65.8
44 TraesCS5A01G114500 chr4D 88.506 87 10 0 2774 2860 71293695 71293609 7.790000e-19 106.0
45 TraesCS5A01G114500 chr4B 88.506 87 10 0 2774 2860 105003210 105003296 7.790000e-19 106.0
46 TraesCS5A01G114500 chr4B 97.143 35 1 0 474 508 99962346 99962312 6.150000e-05 60.2
47 TraesCS5A01G114500 chr7B 95.833 48 1 1 364 410 488413619 488413572 6.110000e-10 76.8
48 TraesCS5A01G114500 chr7B 92.308 52 2 2 364 413 677518857 677518806 7.900000e-09 73.1
49 TraesCS5A01G114500 chr1D 91.071 56 1 4 364 417 383445810 383445757 7.900000e-09 73.1
50 TraesCS5A01G114500 chr6B 88.333 60 5 2 364 422 46649785 46649727 2.840000e-08 71.3
51 TraesCS5A01G114500 chr7D 97.500 40 0 1 364 402 139071535 139071574 3.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G114500 chr5A 229496296 229501982 5686 True 10503.000000 10503 100.000000 1 5687 1 chr5A.!!$R1 5686
1 TraesCS5A01G114500 chr5B 214126571 214130967 4396 False 2072.333333 3903 93.906333 4 4801 3 chr5B.!!$F3 4797
2 TraesCS5A01G114500 chr5D 190495391 190500026 4635 False 1276.200000 3871 93.836800 4 4856 5 chr5D.!!$F1 4852
3 TraesCS5A01G114500 chr2B 771167591 771168373 782 True 1367.000000 1367 98.212000 4907 5687 1 chr2B.!!$R3 780
4 TraesCS5A01G114500 chr1A 74754353 74755171 818 True 1365.000000 1365 96.833000 4872 5687 1 chr1A.!!$R1 815
5 TraesCS5A01G114500 chr1A 446716230 446717009 779 True 1349.000000 1349 97.949000 4911 5687 1 chr1A.!!$R3 776
6 TraesCS5A01G114500 chr4A 650404286 650405040 754 True 1347.000000 1347 98.813000 4930 5687 1 chr4A.!!$R2 757
7 TraesCS5A01G114500 chr6A 317608529 317609286 757 True 1345.000000 1345 98.681000 4930 5687 1 chr6A.!!$R1 757
8 TraesCS5A01G114500 chr2A 41150209 41150963 754 False 1339.000000 1339 98.677000 4930 5685 1 chr2A.!!$F1 755
9 TraesCS5A01G114500 chr3B 245961697 245962455 758 True 1293.000000 1293 97.497000 4932 5687 1 chr3B.!!$R2 755
10 TraesCS5A01G114500 chr7A 232346064 232346883 819 True 395.000000 577 90.009500 4895 5595 2 chr7A.!!$R2 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 506 0.035056 AAGCATTTCCGGACAGAGGG 60.035 55.000 1.83 0.0 0.00 4.30 F
505 508 0.462759 GCATTTCCGGACAGAGGGAG 60.463 60.000 1.83 0.0 33.01 4.30 F
1689 1742 1.227263 GACACGTGATATGCCCGCT 60.227 57.895 25.01 0.0 0.00 5.52 F
3132 3224 0.100503 GACATTTCGCCATTTCCCCG 59.899 55.000 0.00 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2315 2378 0.530870 GCGCCTGGATCTCCTGTTAC 60.531 60.000 0.00 0.00 36.82 2.50 R
2342 2405 5.314529 CTGAACTTGATGCTCCATATGGAT 58.685 41.667 24.73 10.57 44.46 3.41 R
3161 3253 0.033228 TTGGCAAAACGGGCTCAATG 59.967 50.000 0.00 0.00 0.00 2.82 R
4809 5240 2.871096 TCCTATGCCCAAAACTCGTT 57.129 45.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 1.078848 AGCATCTTCAGCGTCACCC 60.079 57.895 0.00 0.00 37.01 4.61
198 199 9.886132 GGTAGATAGTCTCTGAAACCATTTTAA 57.114 33.333 0.00 0.00 32.44 1.52
367 370 5.807392 GCCTAGGTAGGGAGGTAGAGTATTC 60.807 52.000 11.31 0.00 43.82 1.75
368 371 5.312708 CCTAGGTAGGGAGGTAGAGTATTCA 59.687 48.000 0.00 0.00 39.86 2.57
369 372 5.952161 AGGTAGGGAGGTAGAGTATTCAT 57.048 43.478 0.00 0.00 0.00 2.57
370 373 6.296435 AGGTAGGGAGGTAGAGTATTCATT 57.704 41.667 0.00 0.00 0.00 2.57
372 375 7.140304 AGGTAGGGAGGTAGAGTATTCATTTT 58.860 38.462 0.00 0.00 0.00 1.82
373 376 7.071321 AGGTAGGGAGGTAGAGTATTCATTTTG 59.929 40.741 0.00 0.00 0.00 2.44
374 377 7.070821 GGTAGGGAGGTAGAGTATTCATTTTGA 59.929 40.741 0.00 0.00 0.00 2.69
375 378 7.698163 AGGGAGGTAGAGTATTCATTTTGAT 57.302 36.000 0.00 0.00 0.00 2.57
376 379 7.512992 AGGGAGGTAGAGTATTCATTTTGATG 58.487 38.462 0.00 0.00 0.00 3.07
378 381 7.442666 GGGAGGTAGAGTATTCATTTTGATGAC 59.557 40.741 0.00 0.00 0.00 3.06
380 383 9.383519 GAGGTAGAGTATTCATTTTGATGACAA 57.616 33.333 0.00 0.00 0.00 3.18
381 384 9.388506 AGGTAGAGTATTCATTTTGATGACAAG 57.611 33.333 0.00 0.00 37.32 3.16
382 385 9.167311 GGTAGAGTATTCATTTTGATGACAAGT 57.833 33.333 0.00 0.00 37.32 3.16
389 392 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
390 393 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
391 394 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
392 395 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
393 396 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
394 397 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
395 398 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
396 399 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
397 400 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
398 401 1.479323 CAAGTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
399 402 1.400737 AGTATTTCCGGACGGAGGAG 58.599 55.000 13.64 0.00 46.06 3.69
401 404 2.092212 AGTATTTCCGGACGGAGGAGTA 60.092 50.000 13.64 0.00 46.06 2.59
403 406 0.329261 TTTCCGGACGGAGGAGTAGA 59.671 55.000 13.64 0.00 46.06 2.59
406 409 1.451567 CGGACGGAGGAGTAGAGCA 60.452 63.158 0.00 0.00 0.00 4.26
407 410 0.820074 CGGACGGAGGAGTAGAGCAT 60.820 60.000 0.00 0.00 0.00 3.79
408 411 1.542767 CGGACGGAGGAGTAGAGCATA 60.543 57.143 0.00 0.00 0.00 3.14
410 413 2.750712 GGACGGAGGAGTAGAGCATATC 59.249 54.545 0.00 0.00 0.00 1.63
411 414 3.413327 GACGGAGGAGTAGAGCATATCA 58.587 50.000 0.00 0.00 0.00 2.15
412 415 3.821600 GACGGAGGAGTAGAGCATATCAA 59.178 47.826 0.00 0.00 0.00 2.57
413 416 3.823873 ACGGAGGAGTAGAGCATATCAAG 59.176 47.826 0.00 0.00 0.00 3.02
414 417 3.192422 CGGAGGAGTAGAGCATATCAAGG 59.808 52.174 0.00 0.00 0.00 3.61
415 418 4.411927 GGAGGAGTAGAGCATATCAAGGA 58.588 47.826 0.00 0.00 0.00 3.36
416 419 4.835615 GGAGGAGTAGAGCATATCAAGGAA 59.164 45.833 0.00 0.00 0.00 3.36
417 420 5.305644 GGAGGAGTAGAGCATATCAAGGAAA 59.694 44.000 0.00 0.00 0.00 3.13
418 421 6.013812 GGAGGAGTAGAGCATATCAAGGAAAT 60.014 42.308 0.00 0.00 0.00 2.17
419 422 6.767456 AGGAGTAGAGCATATCAAGGAAATG 58.233 40.000 0.00 0.00 0.00 2.32
420 423 6.556495 AGGAGTAGAGCATATCAAGGAAATGA 59.444 38.462 0.00 0.00 0.00 2.57
421 424 7.237263 AGGAGTAGAGCATATCAAGGAAATGAT 59.763 37.037 0.00 0.00 42.52 2.45
422 425 7.333921 GGAGTAGAGCATATCAAGGAAATGATG 59.666 40.741 0.23 0.00 40.21 3.07
423 426 7.971201 AGTAGAGCATATCAAGGAAATGATGA 58.029 34.615 0.23 0.00 40.21 2.92
425 428 9.228949 GTAGAGCATATCAAGGAAATGATGATT 57.771 33.333 0.23 0.00 40.21 2.57
426 429 8.338072 AGAGCATATCAAGGAAATGATGATTC 57.662 34.615 0.23 0.00 40.21 2.52
427 430 7.942894 AGAGCATATCAAGGAAATGATGATTCA 59.057 33.333 0.23 0.00 40.21 2.57
428 431 8.651589 AGCATATCAAGGAAATGATGATTCAT 57.348 30.769 0.00 0.00 44.62 2.57
436 439 9.121517 CAAGGAAATGATGATTCATAATTACGC 57.878 33.333 9.27 3.62 41.83 4.42
437 440 7.820648 AGGAAATGATGATTCATAATTACGCC 58.179 34.615 9.27 10.69 41.83 5.68
439 442 7.752239 GGAAATGATGATTCATAATTACGCCTG 59.248 37.037 9.27 0.00 41.83 4.85
440 443 7.984422 AATGATGATTCATAATTACGCCTGA 57.016 32.000 7.37 0.00 41.83 3.86
441 444 7.984422 ATGATGATTCATAATTACGCCTGAA 57.016 32.000 0.00 2.56 40.87 3.02
442 445 7.984422 TGATGATTCATAATTACGCCTGAAT 57.016 32.000 10.43 10.43 40.16 2.57
444 447 8.935844 TGATGATTCATAATTACGCCTGAATAC 58.064 33.333 10.56 7.44 38.19 1.89
445 448 8.846943 ATGATTCATAATTACGCCTGAATACA 57.153 30.769 10.56 10.57 38.19 2.29
446 449 8.310406 TGATTCATAATTACGCCTGAATACAG 57.690 34.615 10.56 0.00 38.19 2.74
456 459 2.510768 CTGAATACAGGACCGGTAGC 57.489 55.000 7.34 0.00 40.14 3.58
457 460 1.754803 CTGAATACAGGACCGGTAGCA 59.245 52.381 7.34 9.53 40.14 3.49
459 462 2.167693 TGAATACAGGACCGGTAGCAAG 59.832 50.000 7.34 0.00 0.00 4.01
460 463 1.861982 ATACAGGACCGGTAGCAAGT 58.138 50.000 7.34 4.89 0.00 3.16
461 464 1.180029 TACAGGACCGGTAGCAAGTC 58.820 55.000 7.34 0.00 0.00 3.01
462 465 0.830444 ACAGGACCGGTAGCAAGTCA 60.830 55.000 7.34 0.00 31.99 3.41
464 467 0.830444 AGGACCGGTAGCAAGTCACA 60.830 55.000 7.34 0.00 31.99 3.58
467 470 0.466543 ACCGGTAGCAAGTCACACAA 59.533 50.000 4.49 0.00 0.00 3.33
468 471 1.148310 CCGGTAGCAAGTCACACAAG 58.852 55.000 0.00 0.00 0.00 3.16
469 472 1.148310 CGGTAGCAAGTCACACAAGG 58.852 55.000 0.00 0.00 0.00 3.61
470 473 1.540363 CGGTAGCAAGTCACACAAGGT 60.540 52.381 0.00 0.00 0.00 3.50
483 486 5.490139 CACACAAGGTGGATTATGATGAC 57.510 43.478 1.07 0.00 44.04 3.06
484 487 4.943093 CACACAAGGTGGATTATGATGACA 59.057 41.667 1.07 0.00 44.04 3.58
485 488 5.415389 CACACAAGGTGGATTATGATGACAA 59.585 40.000 1.07 0.00 44.04 3.18
486 489 5.649395 ACACAAGGTGGATTATGATGACAAG 59.351 40.000 1.07 0.00 37.94 3.16
487 490 4.641989 ACAAGGTGGATTATGATGACAAGC 59.358 41.667 0.00 0.00 0.00 4.01
488 491 4.508551 AGGTGGATTATGATGACAAGCA 57.491 40.909 0.00 0.00 0.00 3.91
489 492 5.057843 AGGTGGATTATGATGACAAGCAT 57.942 39.130 0.00 0.65 40.77 3.79
490 493 5.452255 AGGTGGATTATGATGACAAGCATT 58.548 37.500 0.26 0.00 37.34 3.56
491 494 5.895534 AGGTGGATTATGATGACAAGCATTT 59.104 36.000 0.26 0.00 37.34 2.32
492 495 6.040166 AGGTGGATTATGATGACAAGCATTTC 59.960 38.462 0.26 0.04 37.34 2.17
493 496 6.211515 GTGGATTATGATGACAAGCATTTCC 58.788 40.000 11.99 11.99 37.34 3.13
494 497 5.008911 TGGATTATGATGACAAGCATTTCCG 59.991 40.000 13.04 0.00 36.66 4.30
495 498 4.898829 TTATGATGACAAGCATTTCCGG 57.101 40.909 0.00 0.00 37.34 5.14
496 499 2.488204 TGATGACAAGCATTTCCGGA 57.512 45.000 0.00 0.00 37.34 5.14
497 500 2.083774 TGATGACAAGCATTTCCGGAC 58.916 47.619 1.83 0.00 37.34 4.79
498 501 2.083774 GATGACAAGCATTTCCGGACA 58.916 47.619 1.83 0.00 37.34 4.02
499 502 1.522668 TGACAAGCATTTCCGGACAG 58.477 50.000 1.83 0.00 0.00 3.51
500 503 1.071542 TGACAAGCATTTCCGGACAGA 59.928 47.619 1.83 0.00 0.00 3.41
501 504 1.734465 GACAAGCATTTCCGGACAGAG 59.266 52.381 1.83 0.00 0.00 3.35
502 505 1.089920 CAAGCATTTCCGGACAGAGG 58.910 55.000 1.83 0.00 0.00 3.69
503 506 0.035056 AAGCATTTCCGGACAGAGGG 60.035 55.000 1.83 0.00 0.00 4.30
504 507 0.909610 AGCATTTCCGGACAGAGGGA 60.910 55.000 1.83 0.00 0.00 4.20
505 508 0.462759 GCATTTCCGGACAGAGGGAG 60.463 60.000 1.83 0.00 33.01 4.30
518 521 2.557056 CAGAGGGAGTACTTGTCAACGA 59.443 50.000 0.00 0.00 0.00 3.85
524 527 2.470821 AGTACTTGTCAACGAGTGCAC 58.529 47.619 9.40 9.40 42.98 4.57
614 630 3.189287 ACTTTAGCATGCCGTGAAAGAAG 59.811 43.478 26.16 16.42 32.62 2.85
615 631 2.760634 TAGCATGCCGTGAAAGAAGA 57.239 45.000 15.66 0.00 0.00 2.87
616 632 1.896220 AGCATGCCGTGAAAGAAGAA 58.104 45.000 15.66 0.00 0.00 2.52
617 633 2.229792 AGCATGCCGTGAAAGAAGAAA 58.770 42.857 15.66 0.00 0.00 2.52
618 634 2.227388 AGCATGCCGTGAAAGAAGAAAG 59.773 45.455 15.66 0.00 0.00 2.62
619 635 2.226437 GCATGCCGTGAAAGAAGAAAGA 59.774 45.455 6.36 0.00 0.00 2.52
620 636 3.304659 GCATGCCGTGAAAGAAGAAAGAA 60.305 43.478 6.36 0.00 0.00 2.52
621 637 4.792704 GCATGCCGTGAAAGAAGAAAGAAA 60.793 41.667 6.36 0.00 0.00 2.52
622 638 4.552166 TGCCGTGAAAGAAGAAAGAAAG 57.448 40.909 0.00 0.00 0.00 2.62
623 639 4.196193 TGCCGTGAAAGAAGAAAGAAAGA 58.804 39.130 0.00 0.00 0.00 2.52
624 640 4.638421 TGCCGTGAAAGAAGAAAGAAAGAA 59.362 37.500 0.00 0.00 0.00 2.52
625 641 5.124776 TGCCGTGAAAGAAGAAAGAAAGAAA 59.875 36.000 0.00 0.00 0.00 2.52
626 642 5.683302 GCCGTGAAAGAAGAAAGAAAGAAAG 59.317 40.000 0.00 0.00 0.00 2.62
627 643 6.458342 GCCGTGAAAGAAGAAAGAAAGAAAGA 60.458 38.462 0.00 0.00 0.00 2.52
628 644 7.472543 CCGTGAAAGAAGAAAGAAAGAAAGAA 58.527 34.615 0.00 0.00 0.00 2.52
629 645 7.968405 CCGTGAAAGAAGAAAGAAAGAAAGAAA 59.032 33.333 0.00 0.00 0.00 2.52
630 646 9.004146 CGTGAAAGAAGAAAGAAAGAAAGAAAG 57.996 33.333 0.00 0.00 0.00 2.62
699 748 4.051237 CCCCGCAAAAAGAAAGAAAGAAG 58.949 43.478 0.00 0.00 0.00 2.85
704 753 6.019559 CCGCAAAAAGAAAGAAAGAAGGAAAG 60.020 38.462 0.00 0.00 0.00 2.62
712 761 8.759481 AGAAAGAAAGAAGGAAAGAAAGATGT 57.241 30.769 0.00 0.00 0.00 3.06
745 794 2.500392 TAGGTTTGGTTTGGGATCGG 57.500 50.000 0.00 0.00 0.00 4.18
828 881 3.567478 AACTCACCTGAAAAGCACTCT 57.433 42.857 0.00 0.00 0.00 3.24
829 882 3.118905 ACTCACCTGAAAAGCACTCTC 57.881 47.619 0.00 0.00 0.00 3.20
830 883 2.435805 ACTCACCTGAAAAGCACTCTCA 59.564 45.455 0.00 0.00 0.00 3.27
831 884 3.072184 ACTCACCTGAAAAGCACTCTCAT 59.928 43.478 0.00 0.00 0.00 2.90
832 885 3.405831 TCACCTGAAAAGCACTCTCATG 58.594 45.455 0.00 0.00 0.00 3.07
833 886 2.486982 CACCTGAAAAGCACTCTCATGG 59.513 50.000 0.00 0.00 0.00 3.66
834 887 2.107204 ACCTGAAAAGCACTCTCATGGT 59.893 45.455 0.00 0.00 0.00 3.55
835 888 2.746362 CCTGAAAAGCACTCTCATGGTC 59.254 50.000 0.00 0.00 0.00 4.02
836 889 3.558746 CCTGAAAAGCACTCTCATGGTCT 60.559 47.826 0.00 0.00 0.00 3.85
837 890 3.668447 TGAAAAGCACTCTCATGGTCTC 58.332 45.455 0.00 0.00 0.00 3.36
852 905 2.159296 TGGTCTCATTGATACACGTCCG 60.159 50.000 4.78 0.00 0.00 4.79
932 985 2.965147 CCTTCCATCTCTCTCTCCCTTC 59.035 54.545 0.00 0.00 0.00 3.46
1689 1742 1.227263 GACACGTGATATGCCCGCT 60.227 57.895 25.01 0.00 0.00 5.52
1690 1743 1.490693 GACACGTGATATGCCCGCTG 61.491 60.000 25.01 0.00 0.00 5.18
1691 1744 2.108976 ACGTGATATGCCCGCTGG 59.891 61.111 0.00 0.00 0.00 4.85
1710 1763 4.720902 CAGGTGACCATGCCGGCA 62.721 66.667 34.80 34.80 39.03 5.69
1781 1834 3.885297 CAGACCAAGAAACAGGACAACAT 59.115 43.478 0.00 0.00 0.00 2.71
2013 2066 3.490439 TGGCTCAAGAACATCAAGTCA 57.510 42.857 0.00 0.00 0.00 3.41
2315 2378 1.266718 GGTGTGGTGTGTATGTGCAAG 59.733 52.381 0.00 0.00 0.00 4.01
2685 2748 2.202932 CCGATCAGGTCTTGCCCG 60.203 66.667 0.00 0.00 38.26 6.13
2701 2764 3.230976 TGCCCGTCTCATCATACATACT 58.769 45.455 0.00 0.00 0.00 2.12
2702 2765 3.255888 TGCCCGTCTCATCATACATACTC 59.744 47.826 0.00 0.00 0.00 2.59
2703 2766 3.367498 GCCCGTCTCATCATACATACTCC 60.367 52.174 0.00 0.00 0.00 3.85
2704 2767 3.119814 CCCGTCTCATCATACATACTCCG 60.120 52.174 0.00 0.00 0.00 4.63
2715 2779 9.937175 CATCATACATACTCCGTACATACATAG 57.063 37.037 0.00 0.00 0.00 2.23
2741 2805 7.114529 GTCACGCATGGTATAGTATAAACACTC 59.885 40.741 0.00 0.00 0.00 3.51
2742 2806 6.365247 CACGCATGGTATAGTATAAACACTCC 59.635 42.308 0.00 0.00 0.00 3.85
2875 2939 2.029073 CGGTCAGTGAGCGTGGTT 59.971 61.111 31.17 0.00 46.41 3.67
2876 2940 1.287815 CGGTCAGTGAGCGTGGTTA 59.712 57.895 31.17 0.00 46.41 2.85
2924 3011 1.392710 ATAACAGGGAGGGAGCGACG 61.393 60.000 0.00 0.00 0.00 5.12
3051 3138 1.008194 CGACTGGACCGACGTCAAA 60.008 57.895 17.16 0.00 41.13 2.69
3121 3213 2.202298 GGCGCCGTTGACATTTCG 60.202 61.111 12.58 0.00 0.00 3.46
3126 3218 0.109319 GCCGTTGACATTTCGCCATT 60.109 50.000 0.00 0.00 0.00 3.16
3127 3219 1.668628 GCCGTTGACATTTCGCCATTT 60.669 47.619 0.00 0.00 0.00 2.32
3128 3220 2.250188 CCGTTGACATTTCGCCATTTC 58.750 47.619 0.00 0.00 0.00 2.17
3129 3221 2.250188 CGTTGACATTTCGCCATTTCC 58.750 47.619 0.00 0.00 0.00 3.13
3130 3222 2.606108 GTTGACATTTCGCCATTTCCC 58.394 47.619 0.00 0.00 0.00 3.97
3131 3223 1.181786 TGACATTTCGCCATTTCCCC 58.818 50.000 0.00 0.00 0.00 4.81
3132 3224 0.100503 GACATTTCGCCATTTCCCCG 59.899 55.000 0.00 0.00 0.00 5.73
3133 3225 1.319614 ACATTTCGCCATTTCCCCGG 61.320 55.000 0.00 0.00 0.00 5.73
3134 3226 1.756561 ATTTCGCCATTTCCCCGGG 60.757 57.895 15.80 15.80 0.00 5.73
3135 3227 2.218115 ATTTCGCCATTTCCCCGGGA 62.218 55.000 26.32 0.34 0.00 5.14
3137 3229 4.109675 CGCCATTTCCCCGGGAGT 62.110 66.667 26.32 0.70 31.21 3.85
3138 3230 2.440247 GCCATTTCCCCGGGAGTG 60.440 66.667 26.32 14.45 31.21 3.51
3139 3231 2.440247 CCATTTCCCCGGGAGTGC 60.440 66.667 26.32 0.00 31.21 4.40
3140 3232 2.824041 CATTTCCCCGGGAGTGCG 60.824 66.667 26.32 4.25 31.21 5.34
3141 3233 4.109675 ATTTCCCCGGGAGTGCGG 62.110 66.667 26.32 3.33 31.21 5.69
3164 3256 3.801997 CAGAGGCCGGGCTCCATT 61.802 66.667 44.31 29.32 0.00 3.16
3165 3257 3.801997 AGAGGCCGGGCTCCATTG 61.802 66.667 44.31 0.00 0.00 2.82
3166 3258 3.797353 GAGGCCGGGCTCCATTGA 61.797 66.667 40.54 0.00 0.00 2.57
3167 3259 3.764160 GAGGCCGGGCTCCATTGAG 62.764 68.421 40.54 0.00 41.84 3.02
3177 3269 0.109132 CTCCATTGAGCCCGTTTTGC 60.109 55.000 0.00 0.00 0.00 3.68
3178 3270 1.079888 CCATTGAGCCCGTTTTGCC 60.080 57.895 0.00 0.00 0.00 4.52
3179 3271 1.664873 CATTGAGCCCGTTTTGCCA 59.335 52.632 0.00 0.00 0.00 4.92
3180 3272 0.033228 CATTGAGCCCGTTTTGCCAA 59.967 50.000 0.00 0.00 0.00 4.52
3181 3273 0.755686 ATTGAGCCCGTTTTGCCAAA 59.244 45.000 0.00 0.00 0.00 3.28
3182 3274 0.537188 TTGAGCCCGTTTTGCCAAAA 59.463 45.000 0.00 0.00 0.00 2.44
3183 3275 0.537188 TGAGCCCGTTTTGCCAAAAA 59.463 45.000 3.79 0.00 32.82 1.94
3184 3276 1.217001 GAGCCCGTTTTGCCAAAAAG 58.783 50.000 3.79 6.52 35.96 2.27
3185 3277 0.827368 AGCCCGTTTTGCCAAAAAGA 59.173 45.000 15.92 0.00 35.96 2.52
3186 3278 1.208293 AGCCCGTTTTGCCAAAAAGAA 59.792 42.857 15.92 0.00 35.96 2.52
3187 3279 2.158827 AGCCCGTTTTGCCAAAAAGAAT 60.159 40.909 15.92 0.72 35.96 2.40
3188 3280 3.070302 AGCCCGTTTTGCCAAAAAGAATA 59.930 39.130 15.92 0.00 35.96 1.75
3189 3281 4.000325 GCCCGTTTTGCCAAAAAGAATAT 59.000 39.130 15.92 0.00 35.96 1.28
3190 3282 4.092821 GCCCGTTTTGCCAAAAAGAATATC 59.907 41.667 15.92 0.00 35.96 1.63
3191 3283 5.233988 CCCGTTTTGCCAAAAAGAATATCA 58.766 37.500 15.92 0.00 35.96 2.15
3192 3284 5.698545 CCCGTTTTGCCAAAAAGAATATCAA 59.301 36.000 15.92 0.00 35.96 2.57
3193 3285 6.203723 CCCGTTTTGCCAAAAAGAATATCAAA 59.796 34.615 15.92 0.00 35.96 2.69
3194 3286 7.254932 CCCGTTTTGCCAAAAAGAATATCAAAA 60.255 33.333 15.92 0.00 35.96 2.44
3195 3287 8.288913 CCGTTTTGCCAAAAAGAATATCAAAAT 58.711 29.630 15.92 0.00 35.96 1.82
3257 3349 8.692110 ACAAATACATATGCATGTTTGTCAAG 57.308 30.769 10.16 4.88 42.98 3.02
3258 3350 8.306038 ACAAATACATATGCATGTTTGTCAAGT 58.694 29.630 10.16 0.00 42.98 3.16
3259 3351 9.786105 CAAATACATATGCATGTTTGTCAAGTA 57.214 29.630 10.16 0.00 42.98 2.24
3261 3353 6.441093 ACATATGCATGTTTGTCAAGTAGG 57.559 37.500 10.16 0.00 42.98 3.18
3262 3354 6.179756 ACATATGCATGTTTGTCAAGTAGGA 58.820 36.000 10.16 0.00 42.98 2.94
3263 3355 6.658816 ACATATGCATGTTTGTCAAGTAGGAA 59.341 34.615 10.16 0.00 42.98 3.36
3264 3356 7.176515 ACATATGCATGTTTGTCAAGTAGGAAA 59.823 33.333 10.16 0.00 42.98 3.13
3265 3357 5.843673 TGCATGTTTGTCAAGTAGGAAAA 57.156 34.783 0.00 0.00 0.00 2.29
3266 3358 6.214191 TGCATGTTTGTCAAGTAGGAAAAA 57.786 33.333 0.00 0.00 0.00 1.94
3267 3359 6.272318 TGCATGTTTGTCAAGTAGGAAAAAG 58.728 36.000 0.00 0.00 0.00 2.27
3268 3360 6.127479 TGCATGTTTGTCAAGTAGGAAAAAGT 60.127 34.615 0.00 0.00 0.00 2.66
3269 3361 6.756542 GCATGTTTGTCAAGTAGGAAAAAGTT 59.243 34.615 0.00 0.00 0.00 2.66
3270 3362 7.277760 GCATGTTTGTCAAGTAGGAAAAAGTTT 59.722 33.333 0.00 0.00 0.00 2.66
3271 3363 8.807581 CATGTTTGTCAAGTAGGAAAAAGTTTC 58.192 33.333 0.00 0.00 0.00 2.78
3272 3364 7.887381 TGTTTGTCAAGTAGGAAAAAGTTTCA 58.113 30.769 3.35 0.00 0.00 2.69
3273 3365 8.527810 TGTTTGTCAAGTAGGAAAAAGTTTCAT 58.472 29.630 3.35 0.00 0.00 2.57
3274 3366 9.020813 GTTTGTCAAGTAGGAAAAAGTTTCATC 57.979 33.333 3.35 0.00 0.00 2.92
3275 3367 7.873719 TGTCAAGTAGGAAAAAGTTTCATCA 57.126 32.000 3.35 0.00 0.00 3.07
3276 3368 8.463930 TGTCAAGTAGGAAAAAGTTTCATCAT 57.536 30.769 3.35 0.00 0.00 2.45
3277 3369 8.352201 TGTCAAGTAGGAAAAAGTTTCATCATG 58.648 33.333 3.35 0.00 0.00 3.07
3278 3370 8.352942 GTCAAGTAGGAAAAAGTTTCATCATGT 58.647 33.333 3.35 0.00 0.00 3.21
3279 3371 9.567776 TCAAGTAGGAAAAAGTTTCATCATGTA 57.432 29.630 3.35 0.00 0.00 2.29
3285 3377 9.918630 AGGAAAAAGTTTCATCATGTAATTCAG 57.081 29.630 3.35 0.00 0.00 3.02
3286 3378 9.696917 GGAAAAAGTTTCATCATGTAATTCAGT 57.303 29.630 3.35 0.00 0.00 3.41
3294 3386 8.839947 TTCATCATGTAATTCAGTTATTTGCG 57.160 30.769 0.00 0.00 0.00 4.85
3295 3387 7.984391 TCATCATGTAATTCAGTTATTTGCGT 58.016 30.769 0.00 0.00 0.00 5.24
3296 3388 7.909641 TCATCATGTAATTCAGTTATTTGCGTG 59.090 33.333 0.00 0.00 0.00 5.34
3297 3389 6.027131 TCATGTAATTCAGTTATTTGCGTGC 58.973 36.000 0.00 0.00 0.00 5.34
3298 3390 5.621197 TGTAATTCAGTTATTTGCGTGCT 57.379 34.783 0.00 0.00 0.00 4.40
3299 3391 6.729391 TGTAATTCAGTTATTTGCGTGCTA 57.271 33.333 0.00 0.00 0.00 3.49
3300 3392 6.539324 TGTAATTCAGTTATTTGCGTGCTAC 58.461 36.000 0.00 0.00 0.00 3.58
3301 3393 5.621197 AATTCAGTTATTTGCGTGCTACA 57.379 34.783 0.00 0.00 0.00 2.74
3302 3394 4.398549 TTCAGTTATTTGCGTGCTACAC 57.601 40.909 0.00 0.00 0.00 2.90
3303 3395 3.394719 TCAGTTATTTGCGTGCTACACA 58.605 40.909 0.00 0.00 33.40 3.72
3304 3396 3.810386 TCAGTTATTTGCGTGCTACACAA 59.190 39.130 0.00 0.00 33.40 3.33
3305 3397 4.273724 TCAGTTATTTGCGTGCTACACAAA 59.726 37.500 0.00 5.40 35.04 2.83
3306 3398 4.973051 CAGTTATTTGCGTGCTACACAAAA 59.027 37.500 6.57 0.00 34.36 2.44
3307 3399 5.457148 CAGTTATTTGCGTGCTACACAAAAA 59.543 36.000 6.57 0.00 34.36 1.94
3527 3619 1.846541 GCTATGTGAAGCTCGGTCTC 58.153 55.000 0.00 0.00 39.50 3.36
3528 3620 1.407258 GCTATGTGAAGCTCGGTCTCT 59.593 52.381 0.00 0.00 39.50 3.10
3529 3621 2.797792 GCTATGTGAAGCTCGGTCTCTG 60.798 54.545 0.00 0.00 39.50 3.35
3530 3622 0.108424 ATGTGAAGCTCGGTCTCTGC 60.108 55.000 0.00 0.00 0.00 4.26
3531 3623 1.290324 GTGAAGCTCGGTCTCTGCA 59.710 57.895 0.00 0.00 0.00 4.41
3532 3624 0.319900 GTGAAGCTCGGTCTCTGCAA 60.320 55.000 0.00 0.00 0.00 4.08
3533 3625 0.610174 TGAAGCTCGGTCTCTGCAAT 59.390 50.000 0.00 0.00 0.00 3.56
3534 3626 1.005340 GAAGCTCGGTCTCTGCAATG 58.995 55.000 0.00 0.00 0.00 2.82
3535 3627 1.023513 AAGCTCGGTCTCTGCAATGC 61.024 55.000 0.00 0.00 0.00 3.56
3536 3628 1.449246 GCTCGGTCTCTGCAATGCT 60.449 57.895 6.82 0.00 0.00 3.79
3537 3629 1.023513 GCTCGGTCTCTGCAATGCTT 61.024 55.000 6.82 0.00 0.00 3.91
3538 3630 1.446907 CTCGGTCTCTGCAATGCTTT 58.553 50.000 6.82 0.00 0.00 3.51
3539 3631 1.808945 CTCGGTCTCTGCAATGCTTTT 59.191 47.619 6.82 0.00 0.00 2.27
3540 3632 2.227388 CTCGGTCTCTGCAATGCTTTTT 59.773 45.455 6.82 0.00 0.00 1.94
3555 3647 1.290639 TTTTTCATTTCCCCGGCGC 59.709 52.632 0.00 0.00 0.00 6.53
3556 3648 1.182385 TTTTTCATTTCCCCGGCGCT 61.182 50.000 7.64 0.00 0.00 5.92
3617 3709 1.961277 CGAACAACCCAAGAGCGCT 60.961 57.895 11.27 11.27 0.00 5.92
3638 3730 3.390521 ATCGGCTCGCACCAAGGA 61.391 61.111 0.00 0.00 0.00 3.36
3683 3775 4.260375 GCAGGTAGTACATTTTGCATCTCG 60.260 45.833 2.06 0.00 0.00 4.04
3719 3811 0.517316 GACCGACCACATGTTTGCTC 59.483 55.000 0.00 0.00 0.00 4.26
3858 3950 5.472148 TGCACCACAATTCTGATTGATTTC 58.528 37.500 6.17 0.00 44.37 2.17
3881 3973 7.024340 TCACCATGACTCTTATCTAACGTAC 57.976 40.000 0.00 0.00 0.00 3.67
4006 4113 3.056465 GGTCCAGAAGTTCAGAGGTACTG 60.056 52.174 5.50 0.00 46.97 2.74
4008 4115 4.765856 GTCCAGAAGTTCAGAGGTACTGTA 59.234 45.833 5.50 0.00 45.86 2.74
4009 4116 4.765856 TCCAGAAGTTCAGAGGTACTGTAC 59.234 45.833 9.46 9.46 45.86 2.90
4025 4132 7.547370 AGGTACTGTACTTCACTTACTAGTACG 59.453 40.741 16.79 3.18 44.46 3.67
4026 4133 7.332182 GGTACTGTACTTCACTTACTAGTACGT 59.668 40.741 16.79 6.23 44.46 3.57
4030 4137 9.574458 CTGTACTTCACTTACTAGTACGTACTA 57.426 37.037 28.76 28.76 44.46 1.82
4031 4138 9.923143 TGTACTTCACTTACTAGTACGTACTAA 57.077 33.333 29.86 19.38 44.46 2.24
4084 4191 3.326588 TCCTGTTTCGAGGAAGGAATTGA 59.673 43.478 9.01 0.00 39.32 2.57
4085 4192 4.072131 CCTGTTTCGAGGAAGGAATTGAA 58.928 43.478 3.86 0.00 34.69 2.69
4086 4193 4.083271 CCTGTTTCGAGGAAGGAATTGAAC 60.083 45.833 3.86 0.00 34.69 3.18
4087 4194 4.456535 TGTTTCGAGGAAGGAATTGAACA 58.543 39.130 0.00 0.00 0.00 3.18
4088 4195 4.884744 TGTTTCGAGGAAGGAATTGAACAA 59.115 37.500 0.00 0.00 0.00 2.83
4089 4196 5.358442 TGTTTCGAGGAAGGAATTGAACAAA 59.642 36.000 0.00 0.00 0.00 2.83
4090 4197 5.689383 TTCGAGGAAGGAATTGAACAAAG 57.311 39.130 0.00 0.00 0.00 2.77
4091 4198 4.072131 TCGAGGAAGGAATTGAACAAAGG 58.928 43.478 0.00 0.00 0.00 3.11
4092 4199 4.072131 CGAGGAAGGAATTGAACAAAGGA 58.928 43.478 0.00 0.00 0.00 3.36
4093 4200 4.518970 CGAGGAAGGAATTGAACAAAGGAA 59.481 41.667 0.00 0.00 0.00 3.36
4094 4201 5.009610 CGAGGAAGGAATTGAACAAAGGAAA 59.990 40.000 0.00 0.00 0.00 3.13
4095 4202 6.460953 CGAGGAAGGAATTGAACAAAGGAAAA 60.461 38.462 0.00 0.00 0.00 2.29
4096 4203 6.820335 AGGAAGGAATTGAACAAAGGAAAAG 58.180 36.000 0.00 0.00 0.00 2.27
4336 4452 3.305403 CGAGAACTTCTACTGCAAGGACA 60.305 47.826 0.00 0.00 39.30 4.02
4555 4698 3.936203 ACGCCAGCAAGACCGGAA 61.936 61.111 9.46 0.00 0.00 4.30
4671 4814 0.549902 TCAGGATCAAAGGCCAGGGA 60.550 55.000 5.01 0.00 0.00 4.20
4692 4835 4.636206 GGAAATCTGTTTTACTGATCCGCT 59.364 41.667 0.00 0.00 36.03 5.52
4750 4893 1.938016 GCGGACGTAACATGACTTGGT 60.938 52.381 0.00 0.00 0.00 3.67
4802 5233 7.773149 ACTCGTTTCAGCTAGATTATTAGTGT 58.227 34.615 0.00 0.00 0.00 3.55
4812 5243 9.947669 AGCTAGATTATTAGTGTAAGTGTAACG 57.052 33.333 0.00 0.00 45.86 3.18
4827 5258 3.126343 GTGTAACGAGTTTTGGGCATAGG 59.874 47.826 0.00 0.00 0.00 2.57
4838 5269 3.060479 TGGGCATAGGAAGTAGGATGT 57.940 47.619 0.00 0.00 0.00 3.06
4839 5270 2.705658 TGGGCATAGGAAGTAGGATGTG 59.294 50.000 0.00 0.00 0.00 3.21
4840 5271 2.706190 GGGCATAGGAAGTAGGATGTGT 59.294 50.000 0.00 0.00 0.00 3.72
4841 5272 3.136626 GGGCATAGGAAGTAGGATGTGTT 59.863 47.826 0.00 0.00 0.00 3.32
4842 5273 4.381411 GGCATAGGAAGTAGGATGTGTTC 58.619 47.826 0.00 0.00 0.00 3.18
4843 5274 4.381411 GCATAGGAAGTAGGATGTGTTCC 58.619 47.826 0.00 0.00 45.85 3.62
4862 5293 8.340230 GTGTTCCACACTTCTTTTATCTTTTG 57.660 34.615 0.00 0.00 45.27 2.44
4863 5294 6.978080 TGTTCCACACTTCTTTTATCTTTTGC 59.022 34.615 0.00 0.00 0.00 3.68
4864 5295 6.707440 TCCACACTTCTTTTATCTTTTGCA 57.293 33.333 0.00 0.00 0.00 4.08
4865 5296 6.738114 TCCACACTTCTTTTATCTTTTGCAG 58.262 36.000 0.00 0.00 0.00 4.41
4866 5297 5.403466 CCACACTTCTTTTATCTTTTGCAGC 59.597 40.000 0.00 0.00 0.00 5.25
4867 5298 6.211515 CACACTTCTTTTATCTTTTGCAGCT 58.788 36.000 0.00 0.00 0.00 4.24
4868 5299 7.362662 CACACTTCTTTTATCTTTTGCAGCTA 58.637 34.615 0.00 0.00 0.00 3.32
4869 5300 7.536622 CACACTTCTTTTATCTTTTGCAGCTAG 59.463 37.037 0.00 0.00 0.00 3.42
4870 5301 7.445402 ACACTTCTTTTATCTTTTGCAGCTAGA 59.555 33.333 0.00 0.00 0.00 2.43
4966 5402 0.386478 GCTTCTGGTCGTACGTCGTT 60.386 55.000 16.05 0.00 40.80 3.85
5504 6060 6.215431 CAGAGAGAGATAGGGGAGAGATAGAA 59.785 46.154 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.362077 AGGAAGCAATTGAACTGCGTTT 59.638 40.909 10.34 0.00 44.75 3.60
1 2 1.956477 AGGAAGCAATTGAACTGCGTT 59.044 42.857 10.34 0.00 44.75 4.84
2 3 1.537202 GAGGAAGCAATTGAACTGCGT 59.463 47.619 10.34 0.00 44.75 5.24
126 127 1.163554 CTTCTTCTGCCCAAGTGAGC 58.836 55.000 0.00 0.00 0.00 4.26
246 249 8.855110 TGAATTCAAGAGCAAAATGTTAGGTTA 58.145 29.630 5.45 0.00 0.00 2.85
367 370 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
368 371 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
369 372 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
370 373 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
372 375 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
373 376 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
374 377 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
375 378 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
376 379 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
378 381 1.479323 TCCTCCGTCCGGAAATACTTG 59.521 52.381 5.23 0.00 44.66 3.16
380 383 1.341778 ACTCCTCCGTCCGGAAATACT 60.342 52.381 5.23 0.00 44.66 2.12
381 384 1.109609 ACTCCTCCGTCCGGAAATAC 58.890 55.000 5.23 0.00 44.66 1.89
382 385 2.173356 TCTACTCCTCCGTCCGGAAATA 59.827 50.000 5.23 0.00 44.66 1.40
384 387 0.329261 TCTACTCCTCCGTCCGGAAA 59.671 55.000 5.23 0.00 44.66 3.13
385 388 0.107312 CTCTACTCCTCCGTCCGGAA 60.107 60.000 5.23 0.00 44.66 4.30
386 389 1.525923 CTCTACTCCTCCGTCCGGA 59.474 63.158 0.00 0.00 42.90 5.14
387 390 2.188161 GCTCTACTCCTCCGTCCGG 61.188 68.421 0.00 0.00 0.00 5.14
388 391 0.820074 ATGCTCTACTCCTCCGTCCG 60.820 60.000 0.00 0.00 0.00 4.79
389 392 2.273538 TATGCTCTACTCCTCCGTCC 57.726 55.000 0.00 0.00 0.00 4.79
390 393 3.413327 TGATATGCTCTACTCCTCCGTC 58.587 50.000 0.00 0.00 0.00 4.79
391 394 3.510531 TGATATGCTCTACTCCTCCGT 57.489 47.619 0.00 0.00 0.00 4.69
392 395 3.192422 CCTTGATATGCTCTACTCCTCCG 59.808 52.174 0.00 0.00 0.00 4.63
393 396 4.411927 TCCTTGATATGCTCTACTCCTCC 58.588 47.826 0.00 0.00 0.00 4.30
394 397 6.412362 TTTCCTTGATATGCTCTACTCCTC 57.588 41.667 0.00 0.00 0.00 3.71
395 398 6.556495 TCATTTCCTTGATATGCTCTACTCCT 59.444 38.462 0.00 0.00 0.00 3.69
396 399 6.763355 TCATTTCCTTGATATGCTCTACTCC 58.237 40.000 0.00 0.00 0.00 3.85
397 400 8.093307 TCATCATTTCCTTGATATGCTCTACTC 58.907 37.037 0.00 0.00 34.59 2.59
398 401 7.971201 TCATCATTTCCTTGATATGCTCTACT 58.029 34.615 0.00 0.00 34.59 2.57
399 402 8.789825 ATCATCATTTCCTTGATATGCTCTAC 57.210 34.615 0.00 0.00 34.59 2.59
401 404 7.942894 TGAATCATCATTTCCTTGATATGCTCT 59.057 33.333 0.00 0.00 34.59 4.09
403 406 8.651589 ATGAATCATCATTTCCTTGATATGCT 57.348 30.769 0.00 0.00 43.89 3.79
410 413 9.121517 GCGTAATTATGAATCATCATTTCCTTG 57.878 33.333 8.93 0.00 43.89 3.61
411 414 8.299570 GGCGTAATTATGAATCATCATTTCCTT 58.700 33.333 8.93 0.00 43.89 3.36
412 415 7.667219 AGGCGTAATTATGAATCATCATTTCCT 59.333 33.333 8.93 9.15 43.89 3.36
413 416 7.752239 CAGGCGTAATTATGAATCATCATTTCC 59.248 37.037 8.93 7.47 43.89 3.13
414 417 8.506437 TCAGGCGTAATTATGAATCATCATTTC 58.494 33.333 8.93 3.07 43.89 2.17
415 418 8.394971 TCAGGCGTAATTATGAATCATCATTT 57.605 30.769 8.93 0.44 43.89 2.32
416 419 7.984422 TCAGGCGTAATTATGAATCATCATT 57.016 32.000 8.93 3.34 43.89 2.57
418 421 7.984422 ATTCAGGCGTAATTATGAATCATCA 57.016 32.000 8.93 0.00 37.76 3.07
419 422 8.935844 TGTATTCAGGCGTAATTATGAATCATC 58.064 33.333 12.95 7.98 40.56 2.92
420 423 8.846943 TGTATTCAGGCGTAATTATGAATCAT 57.153 30.769 12.95 0.00 40.56 2.45
421 424 8.310406 CTGTATTCAGGCGTAATTATGAATCA 57.690 34.615 12.95 10.71 40.56 2.57
437 440 1.754803 TGCTACCGGTCCTGTATTCAG 59.245 52.381 12.40 0.00 41.01 3.02
439 442 2.167900 ACTTGCTACCGGTCCTGTATTC 59.832 50.000 12.40 0.00 0.00 1.75
440 443 2.167900 GACTTGCTACCGGTCCTGTATT 59.832 50.000 12.40 0.00 0.00 1.89
441 444 1.755380 GACTTGCTACCGGTCCTGTAT 59.245 52.381 12.40 0.00 0.00 2.29
442 445 1.180029 GACTTGCTACCGGTCCTGTA 58.820 55.000 12.40 0.00 0.00 2.74
444 447 0.389948 GTGACTTGCTACCGGTCCTG 60.390 60.000 12.40 3.73 0.00 3.86
445 448 0.830444 TGTGACTTGCTACCGGTCCT 60.830 55.000 12.40 0.00 0.00 3.85
446 449 0.669625 GTGTGACTTGCTACCGGTCC 60.670 60.000 12.40 3.85 0.00 4.46
447 450 0.032952 TGTGTGACTTGCTACCGGTC 59.967 55.000 12.40 0.00 0.00 4.79
448 451 0.466543 TTGTGTGACTTGCTACCGGT 59.533 50.000 13.98 13.98 0.00 5.28
449 452 1.148310 CTTGTGTGACTTGCTACCGG 58.852 55.000 0.00 0.00 0.00 5.28
450 453 1.148310 CCTTGTGTGACTTGCTACCG 58.852 55.000 0.00 0.00 0.00 4.02
451 454 2.256117 ACCTTGTGTGACTTGCTACC 57.744 50.000 0.00 0.00 0.00 3.18
461 464 4.943093 TGTCATCATAATCCACCTTGTGTG 59.057 41.667 0.00 0.00 45.01 3.82
462 465 5.178096 TGTCATCATAATCCACCTTGTGT 57.822 39.130 0.00 0.00 0.00 3.72
464 467 4.641989 GCTTGTCATCATAATCCACCTTGT 59.358 41.667 0.00 0.00 0.00 3.16
467 470 4.508551 TGCTTGTCATCATAATCCACCT 57.491 40.909 0.00 0.00 0.00 4.00
468 471 5.779529 AATGCTTGTCATCATAATCCACC 57.220 39.130 0.00 0.00 33.40 4.61
469 472 6.211515 GGAAATGCTTGTCATCATAATCCAC 58.788 40.000 11.47 0.00 33.40 4.02
470 473 5.008911 CGGAAATGCTTGTCATCATAATCCA 59.991 40.000 14.16 0.00 33.40 3.41
471 474 5.455392 CGGAAATGCTTGTCATCATAATCC 58.545 41.667 0.00 8.66 33.40 3.01
472 475 5.239306 TCCGGAAATGCTTGTCATCATAATC 59.761 40.000 0.00 0.00 33.40 1.75
473 476 5.009010 GTCCGGAAATGCTTGTCATCATAAT 59.991 40.000 5.23 0.00 33.40 1.28
474 477 4.335315 GTCCGGAAATGCTTGTCATCATAA 59.665 41.667 5.23 0.00 33.40 1.90
475 478 3.876914 GTCCGGAAATGCTTGTCATCATA 59.123 43.478 5.23 0.00 33.40 2.15
476 479 2.684881 GTCCGGAAATGCTTGTCATCAT 59.315 45.455 5.23 0.00 33.40 2.45
477 480 2.083774 GTCCGGAAATGCTTGTCATCA 58.916 47.619 5.23 0.00 33.40 3.07
478 481 2.083774 TGTCCGGAAATGCTTGTCATC 58.916 47.619 5.23 0.00 33.40 2.92
479 482 2.086869 CTGTCCGGAAATGCTTGTCAT 58.913 47.619 5.23 0.00 36.87 3.06
480 483 1.071542 TCTGTCCGGAAATGCTTGTCA 59.928 47.619 5.23 0.00 0.00 3.58
481 484 1.734465 CTCTGTCCGGAAATGCTTGTC 59.266 52.381 5.23 0.00 0.00 3.18
482 485 1.611673 CCTCTGTCCGGAAATGCTTGT 60.612 52.381 5.23 0.00 0.00 3.16
483 486 1.089920 CCTCTGTCCGGAAATGCTTG 58.910 55.000 5.23 0.00 0.00 4.01
484 487 0.035056 CCCTCTGTCCGGAAATGCTT 60.035 55.000 5.23 0.00 0.00 3.91
485 488 0.909610 TCCCTCTGTCCGGAAATGCT 60.910 55.000 5.23 0.00 0.00 3.79
486 489 0.462759 CTCCCTCTGTCCGGAAATGC 60.463 60.000 5.23 0.00 0.00 3.56
487 490 0.905357 ACTCCCTCTGTCCGGAAATG 59.095 55.000 5.23 0.00 0.00 2.32
488 491 2.108970 GTACTCCCTCTGTCCGGAAAT 58.891 52.381 5.23 0.00 0.00 2.17
489 492 1.076677 AGTACTCCCTCTGTCCGGAAA 59.923 52.381 5.23 0.00 0.00 3.13
490 493 0.702902 AGTACTCCCTCTGTCCGGAA 59.297 55.000 5.23 0.00 0.00 4.30
491 494 0.702902 AAGTACTCCCTCTGTCCGGA 59.297 55.000 0.00 0.00 0.00 5.14
492 495 0.818296 CAAGTACTCCCTCTGTCCGG 59.182 60.000 0.00 0.00 0.00 5.14
493 496 1.473278 GACAAGTACTCCCTCTGTCCG 59.527 57.143 11.91 0.00 0.00 4.79
494 497 2.526432 TGACAAGTACTCCCTCTGTCC 58.474 52.381 17.77 5.24 0.00 4.02
495 498 3.612004 CGTTGACAAGTACTCCCTCTGTC 60.612 52.174 14.93 14.93 0.00 3.51
496 499 2.296471 CGTTGACAAGTACTCCCTCTGT 59.704 50.000 0.00 0.00 0.00 3.41
497 500 2.557056 TCGTTGACAAGTACTCCCTCTG 59.443 50.000 0.00 0.00 0.00 3.35
498 501 2.820787 CTCGTTGACAAGTACTCCCTCT 59.179 50.000 0.00 0.00 0.00 3.69
499 502 2.557490 ACTCGTTGACAAGTACTCCCTC 59.443 50.000 0.00 0.00 0.00 4.30
500 503 2.296471 CACTCGTTGACAAGTACTCCCT 59.704 50.000 0.00 0.00 0.00 4.20
501 504 2.673833 CACTCGTTGACAAGTACTCCC 58.326 52.381 0.00 0.00 0.00 4.30
502 505 2.059541 GCACTCGTTGACAAGTACTCC 58.940 52.381 0.00 0.00 0.00 3.85
503 506 2.471743 GTGCACTCGTTGACAAGTACTC 59.528 50.000 10.32 0.00 0.00 2.59
504 507 2.100916 AGTGCACTCGTTGACAAGTACT 59.899 45.455 15.25 0.00 0.00 2.73
505 508 2.470821 AGTGCACTCGTTGACAAGTAC 58.529 47.619 15.25 0.00 0.00 2.73
518 521 1.202639 TGATTGAACCACGAGTGCACT 60.203 47.619 21.88 21.88 31.82 4.40
524 527 6.435430 TTTATGGAATGATTGAACCACGAG 57.565 37.500 0.00 0.00 35.19 4.18
627 643 9.862371 GTCCTTTCTTTCTTTCTTTCTTTCTTT 57.138 29.630 0.00 0.00 0.00 2.52
628 644 9.025041 TGTCCTTTCTTTCTTTCTTTCTTTCTT 57.975 29.630 0.00 0.00 0.00 2.52
629 645 8.581253 TGTCCTTTCTTTCTTTCTTTCTTTCT 57.419 30.769 0.00 0.00 0.00 2.52
630 646 9.809096 ATTGTCCTTTCTTTCTTTCTTTCTTTC 57.191 29.630 0.00 0.00 0.00 2.62
631 647 9.809096 GATTGTCCTTTCTTTCTTTCTTTCTTT 57.191 29.630 0.00 0.00 0.00 2.52
632 648 9.194972 AGATTGTCCTTTCTTTCTTTCTTTCTT 57.805 29.630 0.00 0.00 0.00 2.52
699 748 6.749923 ATGTAGCAAGACATCTTTCTTTCC 57.250 37.500 0.00 0.00 34.97 3.13
712 761 6.808321 ACCAAACCTATAGATGTAGCAAGA 57.192 37.500 0.00 0.00 0.00 3.02
726 775 1.986631 TCCGATCCCAAACCAAACCTA 59.013 47.619 0.00 0.00 0.00 3.08
727 776 0.774908 TCCGATCCCAAACCAAACCT 59.225 50.000 0.00 0.00 0.00 3.50
745 794 4.567159 CGTTAAGGATCCAAAGTGCTACTC 59.433 45.833 15.82 0.00 0.00 2.59
828 881 4.441495 GGACGTGTATCAATGAGACCATGA 60.441 45.833 5.50 0.00 32.36 3.07
829 882 3.804325 GGACGTGTATCAATGAGACCATG 59.196 47.826 5.50 2.55 32.36 3.66
830 883 3.490933 CGGACGTGTATCAATGAGACCAT 60.491 47.826 5.50 0.00 33.66 3.55
831 884 2.159296 CGGACGTGTATCAATGAGACCA 60.159 50.000 5.50 0.00 0.00 4.02
832 885 2.460918 CGGACGTGTATCAATGAGACC 58.539 52.381 5.50 0.00 0.00 3.85
833 886 1.852895 GCGGACGTGTATCAATGAGAC 59.147 52.381 0.37 0.37 0.00 3.36
834 887 1.202371 GGCGGACGTGTATCAATGAGA 60.202 52.381 0.00 0.00 0.00 3.27
835 888 1.202417 AGGCGGACGTGTATCAATGAG 60.202 52.381 0.00 0.00 0.00 2.90
836 889 0.821517 AGGCGGACGTGTATCAATGA 59.178 50.000 0.00 0.00 0.00 2.57
837 890 1.202417 AGAGGCGGACGTGTATCAATG 60.202 52.381 0.00 0.00 0.00 2.82
852 905 2.206576 AGGTTGGTGATTTGAGAGGC 57.793 50.000 0.00 0.00 0.00 4.70
1013 1066 2.598619 GAATGCCTCCTTTTCGCCGC 62.599 60.000 0.00 0.00 0.00 6.53
1020 1073 2.800250 CAGTGGAAGAATGCCTCCTTT 58.200 47.619 0.00 0.00 31.46 3.11
1059 1112 1.078497 GGTGTCGATGTGGATGCCA 60.078 57.895 0.00 0.00 0.00 4.92
1693 1746 4.720902 TGCCGGCATGGTCACCTG 62.721 66.667 29.03 0.00 41.21 4.00
1694 1747 3.704231 GATGCCGGCATGGTCACCT 62.704 63.158 44.96 21.58 41.21 4.00
1695 1748 3.211963 GATGCCGGCATGGTCACC 61.212 66.667 44.96 25.82 41.21 4.02
1724 1777 1.302993 TCGCCTTTGGTGCCCTTAC 60.303 57.895 0.00 0.00 32.51 2.34
2013 2066 4.082523 CCGATGGTGGTGGCGACT 62.083 66.667 0.00 0.00 0.00 4.18
2218 2275 1.000955 AGTTTCTCAGTGTACCAGCCG 59.999 52.381 0.00 0.00 0.00 5.52
2219 2276 2.037251 TGAGTTTCTCAGTGTACCAGCC 59.963 50.000 0.00 0.00 35.39 4.85
2220 2277 3.386768 TGAGTTTCTCAGTGTACCAGC 57.613 47.619 0.00 0.00 35.39 4.85
2221 2278 3.681897 GCATGAGTTTCTCAGTGTACCAG 59.318 47.826 0.00 0.00 44.08 4.00
2315 2378 0.530870 GCGCCTGGATCTCCTGTTAC 60.531 60.000 0.00 0.00 36.82 2.50
2342 2405 5.314529 CTGAACTTGATGCTCCATATGGAT 58.685 41.667 24.73 10.57 44.46 3.41
2701 2764 2.944349 TGCGTGACTATGTATGTACGGA 59.056 45.455 0.00 0.00 32.69 4.69
2702 2765 3.343380 TGCGTGACTATGTATGTACGG 57.657 47.619 0.00 0.00 32.69 4.02
2703 2766 3.668656 CCATGCGTGACTATGTATGTACG 59.331 47.826 7.72 0.00 35.06 3.67
2704 2767 4.617959 ACCATGCGTGACTATGTATGTAC 58.382 43.478 7.72 0.00 35.06 2.90
2715 2779 6.921857 AGTGTTTATACTATACCATGCGTGAC 59.078 38.462 7.72 0.00 0.00 3.67
2741 2805 0.599204 ACAAGCCGTACGTGTCAAGG 60.599 55.000 15.21 0.00 36.06 3.61
2742 2806 2.895039 ACAAGCCGTACGTGTCAAG 58.105 52.632 15.21 0.00 36.06 3.02
2874 2938 6.942576 ACAAGAAACCTACTCCTACTACGTAA 59.057 38.462 0.00 0.00 0.00 3.18
2875 2939 6.476378 ACAAGAAACCTACTCCTACTACGTA 58.524 40.000 0.00 0.00 0.00 3.57
2876 2940 5.320277 ACAAGAAACCTACTCCTACTACGT 58.680 41.667 0.00 0.00 0.00 3.57
2924 3011 1.630244 GATGCTCGTCACTGCACACC 61.630 60.000 0.00 0.00 42.26 4.16
3051 3138 4.148825 GCGGCGGTGACCATCTCT 62.149 66.667 9.78 0.00 0.00 3.10
3121 3213 2.440247 CACTCCCGGGGAAATGGC 60.440 66.667 23.50 0.00 0.00 4.40
3134 3226 3.782244 CTCTGCAACGCCGCACTC 61.782 66.667 0.00 0.00 36.86 3.51
3147 3239 3.801997 AATGGAGCCCGGCCTCTG 61.802 66.667 12.89 0.00 32.43 3.35
3148 3240 3.801997 CAATGGAGCCCGGCCTCT 61.802 66.667 12.89 0.13 32.43 3.69
3149 3241 3.764160 CTCAATGGAGCCCGGCCTC 62.764 68.421 3.19 3.19 33.67 4.70
3150 3242 3.801997 CTCAATGGAGCCCGGCCT 61.802 66.667 5.55 0.00 33.67 5.19
3158 3250 0.109132 GCAAAACGGGCTCAATGGAG 60.109 55.000 0.00 0.00 44.33 3.86
3159 3251 1.531739 GGCAAAACGGGCTCAATGGA 61.532 55.000 0.00 0.00 0.00 3.41
3160 3252 1.079888 GGCAAAACGGGCTCAATGG 60.080 57.895 0.00 0.00 0.00 3.16
3161 3253 0.033228 TTGGCAAAACGGGCTCAATG 59.967 50.000 0.00 0.00 0.00 2.82
3162 3254 0.755686 TTTGGCAAAACGGGCTCAAT 59.244 45.000 10.83 0.00 0.00 2.57
3163 3255 0.537188 TTTTGGCAAAACGGGCTCAA 59.463 45.000 20.81 0.00 0.00 3.02
3164 3256 0.537188 TTTTTGGCAAAACGGGCTCA 59.463 45.000 24.04 5.92 0.00 4.26
3165 3257 1.202475 TCTTTTTGGCAAAACGGGCTC 60.202 47.619 24.04 0.00 0.00 4.70
3166 3258 0.827368 TCTTTTTGGCAAAACGGGCT 59.173 45.000 24.04 0.00 0.00 5.19
3167 3259 1.657822 TTCTTTTTGGCAAAACGGGC 58.342 45.000 24.04 0.00 0.00 6.13
3168 3260 5.233988 TGATATTCTTTTTGGCAAAACGGG 58.766 37.500 24.04 16.44 0.00 5.28
3169 3261 6.777526 TTGATATTCTTTTTGGCAAAACGG 57.222 33.333 24.04 18.65 0.00 4.44
3231 3323 9.786105 CTTGACAAACATGCATATGTATTTGTA 57.214 29.630 19.19 9.11 46.54 2.41
3232 3324 8.306038 ACTTGACAAACATGCATATGTATTTGT 58.694 29.630 19.23 19.23 46.54 2.83
3233 3325 8.692110 ACTTGACAAACATGCATATGTATTTG 57.308 30.769 14.58 14.58 46.54 2.32
3235 3327 8.623903 CCTACTTGACAAACATGCATATGTATT 58.376 33.333 3.23 0.00 46.54 1.89
3236 3328 7.992608 TCCTACTTGACAAACATGCATATGTAT 59.007 33.333 0.00 1.99 46.54 2.29
3237 3329 7.334858 TCCTACTTGACAAACATGCATATGTA 58.665 34.615 0.00 0.00 46.54 2.29
3239 3331 6.682423 TCCTACTTGACAAACATGCATATG 57.318 37.500 0.00 0.00 40.24 1.78
3240 3332 7.701539 TTTCCTACTTGACAAACATGCATAT 57.298 32.000 0.00 0.00 0.00 1.78
3241 3333 7.517614 TTTTCCTACTTGACAAACATGCATA 57.482 32.000 0.00 0.00 0.00 3.14
3242 3334 6.403866 TTTTCCTACTTGACAAACATGCAT 57.596 33.333 0.00 0.00 0.00 3.96
3243 3335 5.843673 TTTTCCTACTTGACAAACATGCA 57.156 34.783 0.00 0.00 0.00 3.96
3244 3336 6.273071 ACTTTTTCCTACTTGACAAACATGC 58.727 36.000 0.00 0.00 0.00 4.06
3245 3337 8.702163 AAACTTTTTCCTACTTGACAAACATG 57.298 30.769 0.00 0.00 0.00 3.21
3246 3338 8.527810 TGAAACTTTTTCCTACTTGACAAACAT 58.472 29.630 0.00 0.00 0.00 2.71
3247 3339 7.887381 TGAAACTTTTTCCTACTTGACAAACA 58.113 30.769 0.00 0.00 0.00 2.83
3248 3340 8.926715 ATGAAACTTTTTCCTACTTGACAAAC 57.073 30.769 0.00 0.00 0.00 2.93
3249 3341 8.744652 TGATGAAACTTTTTCCTACTTGACAAA 58.255 29.630 0.00 0.00 0.00 2.83
3250 3342 8.287439 TGATGAAACTTTTTCCTACTTGACAA 57.713 30.769 0.00 0.00 0.00 3.18
3251 3343 7.873719 TGATGAAACTTTTTCCTACTTGACA 57.126 32.000 0.00 0.00 0.00 3.58
3252 3344 8.352942 ACATGATGAAACTTTTTCCTACTTGAC 58.647 33.333 0.00 0.00 0.00 3.18
3253 3345 8.463930 ACATGATGAAACTTTTTCCTACTTGA 57.536 30.769 0.00 0.00 0.00 3.02
3259 3351 9.918630 CTGAATTACATGATGAAACTTTTTCCT 57.081 29.630 0.00 0.00 0.00 3.36
3260 3352 9.696917 ACTGAATTACATGATGAAACTTTTTCC 57.303 29.630 0.00 0.00 0.00 3.13
3268 3360 9.288124 CGCAAATAACTGAATTACATGATGAAA 57.712 29.630 0.00 0.00 0.00 2.69
3269 3361 8.458052 ACGCAAATAACTGAATTACATGATGAA 58.542 29.630 0.00 0.00 0.00 2.57
3270 3362 7.909641 CACGCAAATAACTGAATTACATGATGA 59.090 33.333 0.00 0.00 0.00 2.92
3271 3363 7.305590 GCACGCAAATAACTGAATTACATGATG 60.306 37.037 0.00 0.00 0.00 3.07
3272 3364 6.692681 GCACGCAAATAACTGAATTACATGAT 59.307 34.615 0.00 0.00 0.00 2.45
3273 3365 6.027131 GCACGCAAATAACTGAATTACATGA 58.973 36.000 0.00 0.00 0.00 3.07
3274 3366 6.029607 AGCACGCAAATAACTGAATTACATG 58.970 36.000 0.00 0.00 0.00 3.21
3275 3367 6.194796 AGCACGCAAATAACTGAATTACAT 57.805 33.333 0.00 0.00 0.00 2.29
3276 3368 5.621197 AGCACGCAAATAACTGAATTACA 57.379 34.783 0.00 0.00 0.00 2.41
3277 3369 6.464834 GTGTAGCACGCAAATAACTGAATTAC 59.535 38.462 0.00 0.00 0.00 1.89
3278 3370 6.147985 TGTGTAGCACGCAAATAACTGAATTA 59.852 34.615 0.89 0.00 35.42 1.40
3279 3371 5.049060 TGTGTAGCACGCAAATAACTGAATT 60.049 36.000 0.89 0.00 35.42 2.17
3280 3372 4.454161 TGTGTAGCACGCAAATAACTGAAT 59.546 37.500 0.89 0.00 35.42 2.57
3281 3373 3.810386 TGTGTAGCACGCAAATAACTGAA 59.190 39.130 0.89 0.00 35.42 3.02
3282 3374 3.394719 TGTGTAGCACGCAAATAACTGA 58.605 40.909 0.89 0.00 35.42 3.41
3283 3375 3.804518 TGTGTAGCACGCAAATAACTG 57.195 42.857 0.89 0.00 35.42 3.16
3508 3600 1.407258 AGAGACCGAGCTTCACATAGC 59.593 52.381 0.00 0.00 41.53 2.97
3509 3601 2.797792 GCAGAGACCGAGCTTCACATAG 60.798 54.545 0.00 0.00 0.00 2.23
3510 3602 1.135139 GCAGAGACCGAGCTTCACATA 59.865 52.381 0.00 0.00 0.00 2.29
3511 3603 0.108424 GCAGAGACCGAGCTTCACAT 60.108 55.000 0.00 0.00 0.00 3.21
3512 3604 1.290324 GCAGAGACCGAGCTTCACA 59.710 57.895 0.00 0.00 0.00 3.58
3513 3605 0.319900 TTGCAGAGACCGAGCTTCAC 60.320 55.000 0.00 0.00 0.00 3.18
3514 3606 0.610174 ATTGCAGAGACCGAGCTTCA 59.390 50.000 0.00 0.00 0.00 3.02
3515 3607 1.005340 CATTGCAGAGACCGAGCTTC 58.995 55.000 0.00 0.00 0.00 3.86
3516 3608 1.023513 GCATTGCAGAGACCGAGCTT 61.024 55.000 3.15 0.00 0.00 3.74
3517 3609 1.449246 GCATTGCAGAGACCGAGCT 60.449 57.895 3.15 0.00 0.00 4.09
3518 3610 1.023513 AAGCATTGCAGAGACCGAGC 61.024 55.000 11.91 0.00 0.00 5.03
3519 3611 1.446907 AAAGCATTGCAGAGACCGAG 58.553 50.000 11.91 0.00 0.00 4.63
3520 3612 1.896220 AAAAGCATTGCAGAGACCGA 58.104 45.000 11.91 0.00 0.00 4.69
3521 3613 2.712057 AAAAAGCATTGCAGAGACCG 57.288 45.000 11.91 0.00 0.00 4.79
3537 3629 1.182385 AGCGCCGGGGAAATGAAAAA 61.182 50.000 24.68 0.00 0.00 1.94
3538 3630 1.182385 AAGCGCCGGGGAAATGAAAA 61.182 50.000 24.68 0.00 0.00 2.29
3539 3631 0.322636 TAAGCGCCGGGGAAATGAAA 60.323 50.000 24.68 0.00 0.00 2.69
3540 3632 0.106918 ATAAGCGCCGGGGAAATGAA 60.107 50.000 24.68 0.63 0.00 2.57
3541 3633 0.106918 AATAAGCGCCGGGGAAATGA 60.107 50.000 24.68 0.00 0.00 2.57
3542 3634 0.744281 AAATAAGCGCCGGGGAAATG 59.256 50.000 24.68 0.00 0.00 2.32
3543 3635 2.351706 TAAATAAGCGCCGGGGAAAT 57.648 45.000 24.68 8.75 0.00 2.17
3544 3636 2.351706 ATAAATAAGCGCCGGGGAAA 57.648 45.000 24.68 6.51 0.00 3.13
3545 3637 2.223745 GAATAAATAAGCGCCGGGGAA 58.776 47.619 24.68 6.92 0.00 3.97
3546 3638 1.141254 TGAATAAATAAGCGCCGGGGA 59.859 47.619 24.68 0.81 0.00 4.81
3547 3639 1.600023 TGAATAAATAAGCGCCGGGG 58.400 50.000 15.40 15.40 0.00 5.73
3548 3640 2.552315 ACATGAATAAATAAGCGCCGGG 59.448 45.455 2.29 0.00 0.00 5.73
3549 3641 3.896648 ACATGAATAAATAAGCGCCGG 57.103 42.857 2.29 0.00 0.00 6.13
3550 3642 5.396362 CAGAAACATGAATAAATAAGCGCCG 59.604 40.000 2.29 0.00 0.00 6.46
3551 3643 6.414987 GTCAGAAACATGAATAAATAAGCGCC 59.585 38.462 2.29 0.00 0.00 6.53
3552 3644 6.966632 TGTCAGAAACATGAATAAATAAGCGC 59.033 34.615 0.00 0.00 31.20 5.92
3553 3645 7.162546 CGTGTCAGAAACATGAATAAATAAGCG 59.837 37.037 0.00 0.00 46.13 4.68
3554 3646 7.044706 GCGTGTCAGAAACATGAATAAATAAGC 60.045 37.037 0.00 0.00 46.13 3.09
3555 3647 7.429340 GGCGTGTCAGAAACATGAATAAATAAG 59.571 37.037 0.00 0.00 46.13 1.73
3556 3648 7.247728 GGCGTGTCAGAAACATGAATAAATAA 58.752 34.615 0.00 0.00 46.13 1.40
3617 3709 0.249447 CTTGGTGCGAGCCGATGATA 60.249 55.000 0.00 0.00 0.00 2.15
3638 3730 0.685097 TCTTGTAGAACCGGCAGCTT 59.315 50.000 0.00 0.00 0.00 3.74
3683 3775 3.938963 TCGGTCAATACCTGCTGAATTTC 59.061 43.478 0.00 0.00 44.35 2.17
3706 3798 4.458295 AGATTCTCTTGAGCAAACATGTGG 59.542 41.667 0.00 0.00 0.00 4.17
3719 3811 2.002127 GCGCCACGAGATTCTCTTG 58.998 57.895 12.08 12.08 34.04 3.02
3768 3860 0.608308 TGGACTGGACGTCGATCTGT 60.608 55.000 9.92 6.02 43.79 3.41
3858 3950 5.907945 CGTACGTTAGATAAGAGTCATGGTG 59.092 44.000 7.22 0.00 0.00 4.17
3881 3973 1.078759 GACGTCCAGGAGCATCAACG 61.079 60.000 3.51 0.00 36.25 4.10
4025 4132 6.518208 TTGGTGGCCATTGTTAATTAGTAC 57.482 37.500 9.72 0.00 31.53 2.73
4026 4133 5.126384 GCTTGGTGGCCATTGTTAATTAGTA 59.874 40.000 9.72 0.00 31.53 1.82
4030 4137 3.333029 GCTTGGTGGCCATTGTTAATT 57.667 42.857 9.72 0.00 31.53 1.40
4084 4191 7.658167 TCCGTTTTCTTTTTCTTTTCCTTTGTT 59.342 29.630 0.00 0.00 0.00 2.83
4085 4192 7.156000 TCCGTTTTCTTTTTCTTTTCCTTTGT 58.844 30.769 0.00 0.00 0.00 2.83
4086 4193 7.544217 TCTCCGTTTTCTTTTTCTTTTCCTTTG 59.456 33.333 0.00 0.00 0.00 2.77
4087 4194 7.608153 TCTCCGTTTTCTTTTTCTTTTCCTTT 58.392 30.769 0.00 0.00 0.00 3.11
4088 4195 7.165460 TCTCCGTTTTCTTTTTCTTTTCCTT 57.835 32.000 0.00 0.00 0.00 3.36
4089 4196 6.769134 TCTCCGTTTTCTTTTTCTTTTCCT 57.231 33.333 0.00 0.00 0.00 3.36
4090 4197 6.475727 CCTTCTCCGTTTTCTTTTTCTTTTCC 59.524 38.462 0.00 0.00 0.00 3.13
4091 4198 7.255569 TCCTTCTCCGTTTTCTTTTTCTTTTC 58.744 34.615 0.00 0.00 0.00 2.29
4092 4199 7.165460 TCCTTCTCCGTTTTCTTTTTCTTTT 57.835 32.000 0.00 0.00 0.00 2.27
4093 4200 6.769134 TCCTTCTCCGTTTTCTTTTTCTTT 57.231 33.333 0.00 0.00 0.00 2.52
4094 4201 6.602009 TCTTCCTTCTCCGTTTTCTTTTTCTT 59.398 34.615 0.00 0.00 0.00 2.52
4095 4202 6.120220 TCTTCCTTCTCCGTTTTCTTTTTCT 58.880 36.000 0.00 0.00 0.00 2.52
4096 4203 6.373186 TCTTCCTTCTCCGTTTTCTTTTTC 57.627 37.500 0.00 0.00 0.00 2.29
4107 4223 3.056536 TCACTTGTCATCTTCCTTCTCCG 60.057 47.826 0.00 0.00 0.00 4.63
4671 4814 5.245531 TGAGCGGATCAGTAAAACAGATTT 58.754 37.500 0.00 0.00 32.77 2.17
4692 4835 6.849085 TTAAATTTGCAAGGATTAGGCTGA 57.151 33.333 0.00 0.00 0.00 4.26
4750 4893 3.489416 CACAAGATCGTGAAAACGAGTCA 59.511 43.478 15.90 0.00 45.70 3.41
4802 5233 3.806380 TGCCCAAAACTCGTTACACTTA 58.194 40.909 0.00 0.00 0.00 2.24
4809 5240 2.871096 TCCTATGCCCAAAACTCGTT 57.129 45.000 0.00 0.00 0.00 3.85
4812 5243 4.080526 TCCTACTTCCTATGCCCAAAACTC 60.081 45.833 0.00 0.00 0.00 3.01
4814 5245 4.230745 TCCTACTTCCTATGCCCAAAAC 57.769 45.455 0.00 0.00 0.00 2.43
4839 5270 6.978080 TGCAAAAGATAAAAGAAGTGTGGAAC 59.022 34.615 0.00 0.00 37.35 3.62
4840 5271 7.106439 TGCAAAAGATAAAAGAAGTGTGGAA 57.894 32.000 0.00 0.00 0.00 3.53
4841 5272 6.707440 TGCAAAAGATAAAAGAAGTGTGGA 57.293 33.333 0.00 0.00 0.00 4.02
4842 5273 5.403466 GCTGCAAAAGATAAAAGAAGTGTGG 59.597 40.000 0.00 0.00 0.00 4.17
4843 5274 6.211515 AGCTGCAAAAGATAAAAGAAGTGTG 58.788 36.000 1.02 0.00 0.00 3.82
4844 5275 6.396829 AGCTGCAAAAGATAAAAGAAGTGT 57.603 33.333 1.02 0.00 0.00 3.55
4845 5276 7.810658 TCTAGCTGCAAAAGATAAAAGAAGTG 58.189 34.615 1.02 0.00 0.00 3.16
4846 5277 7.986085 TCTAGCTGCAAAAGATAAAAGAAGT 57.014 32.000 1.02 0.00 0.00 3.01
5082 5524 2.993008 GAGCTCACCTCCATGCCA 59.007 61.111 9.40 0.00 34.35 4.92
5467 6015 4.497291 TCTCTCTCTGAACCCTCTCTAC 57.503 50.000 0.00 0.00 0.00 2.59
5504 6060 2.685380 CCGCCTCCTGTCTCCCTT 60.685 66.667 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.