Multiple sequence alignment - TraesCS5A01G114400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G114400 chr5A 100.000 9154 0 0 1 9154 228894654 228885501 0.000000e+00 16905.0
1 TraesCS5A01G114400 chr5A 97.546 326 8 0 2078 2403 374886162 374885837 8.030000e-155 558.0
2 TraesCS5A01G114400 chr5A 89.381 452 30 12 1 434 166882720 166883171 3.740000e-153 553.0
3 TraesCS5A01G114400 chr5A 84.419 430 64 1 8728 9154 158753813 158753384 3.950000e-113 420.0
4 TraesCS5A01G114400 chr5A 90.625 128 11 1 8602 8728 158754243 158754116 1.580000e-37 169.0
5 TraesCS5A01G114400 chr5A 97.802 91 2 0 7108 7198 584680885 584680795 3.420000e-34 158.0
6 TraesCS5A01G114400 chr5A 87.838 74 5 2 4691 4761 46563305 46563233 5.890000e-12 84.2
7 TraesCS5A01G114400 chr5D 97.383 4738 79 22 2401 7113 191254644 191259361 0.000000e+00 8021.0
8 TraesCS5A01G114400 chr5D 95.547 1325 25 9 765 2081 191253349 191254647 0.000000e+00 2089.0
9 TraesCS5A01G114400 chr5D 95.372 994 23 5 7468 8458 191259666 191260639 0.000000e+00 1559.0
10 TraesCS5A01G114400 chr5D 91.887 567 41 3 8593 9154 191265487 191266053 0.000000e+00 787.0
11 TraesCS5A01G114400 chr5D 99.257 269 1 1 7195 7462 191259359 191259627 1.380000e-132 484.0
12 TraesCS5A01G114400 chr5D 94.186 86 5 0 8458 8543 191260677 191260762 2.070000e-26 132.0
13 TraesCS5A01G114400 chr5D 100.000 45 0 0 6772 6816 458811245 458811289 5.890000e-12 84.2
14 TraesCS5A01G114400 chr5D 100.000 43 0 0 8550 8592 191265424 191265466 7.620000e-11 80.5
15 TraesCS5A01G114400 chr5B 96.170 4752 126 24 2401 7113 213477562 213472828 0.000000e+00 7716.0
16 TraesCS5A01G114400 chr5B 94.658 1329 41 15 765 2088 213478857 213477554 0.000000e+00 2034.0
17 TraesCS5A01G114400 chr5B 94.135 682 22 5 7735 8413 213472104 213471438 0.000000e+00 1022.0
18 TraesCS5A01G114400 chr5B 89.266 531 31 9 1 512 247343962 247344485 7.750000e-180 641.0
19 TraesCS5A01G114400 chr5B 95.783 332 13 1 2075 2405 31873787 31874118 1.350000e-147 534.0
20 TraesCS5A01G114400 chr5B 96.310 271 6 3 7195 7462 213472830 213472561 8.440000e-120 442.0
21 TraesCS5A01G114400 chr5B 95.604 273 10 1 7479 7751 213472514 213472244 3.920000e-118 436.0
22 TraesCS5A01G114400 chr5B 95.964 223 9 0 13 235 117936129 117935907 6.760000e-96 363.0
23 TraesCS5A01G114400 chr5B 96.078 51 0 2 6767 6816 635464465 635464514 2.120000e-11 82.4
24 TraesCS5A01G114400 chr5B 93.478 46 1 2 7195 7238 213472878 213472833 5.930000e-07 67.6
25 TraesCS5A01G114400 chr3A 89.186 786 59 8 1 766 302495637 302496416 0.000000e+00 957.0
26 TraesCS5A01G114400 chr3A 87.111 450 27 10 1 434 267365776 267366210 1.790000e-131 481.0
27 TraesCS5A01G114400 chr3A 86.842 418 36 12 357 772 361579806 361580206 5.040000e-122 449.0
28 TraesCS5A01G114400 chr3A 96.774 93 3 0 7107 7199 451611466 451611374 1.230000e-33 156.0
29 TraesCS5A01G114400 chr3A 100.000 46 0 0 6773 6818 335474212 335474167 1.640000e-12 86.1
30 TraesCS5A01G114400 chr3B 87.975 790 68 7 10 778 678846486 678847269 0.000000e+00 907.0
31 TraesCS5A01G114400 chr3B 84.722 792 72 20 13 768 611890879 611890101 0.000000e+00 747.0
32 TraesCS5A01G114400 chr3B 87.173 382 34 7 372 752 371042771 371043138 3.950000e-113 420.0
33 TraesCS5A01G114400 chr3B 95.556 90 4 0 7108 7197 816514523 816514612 2.660000e-30 145.0
34 TraesCS5A01G114400 chr3B 100.000 46 0 0 6773 6818 305531526 305531571 1.640000e-12 86.1
35 TraesCS5A01G114400 chr3B 94.118 51 3 0 6766 6816 686338125 686338175 2.740000e-10 78.7
36 TraesCS5A01G114400 chr3B 92.683 41 3 0 8602 8642 806108538 806108578 9.930000e-05 60.2
37 TraesCS5A01G114400 chr4A 85.679 803 61 12 13 767 740083415 740082619 0.000000e+00 797.0
38 TraesCS5A01G114400 chr4A 77.105 380 82 3 8598 8972 187567025 187566646 2.000000e-51 215.0
39 TraesCS5A01G114400 chr3D 87.011 562 65 4 8598 9154 87446174 87445616 2.170000e-175 627.0
40 TraesCS5A01G114400 chr3D 100.000 46 0 0 6773 6818 254106870 254106915 1.640000e-12 86.1
41 TraesCS5A01G114400 chr3D 83.784 74 11 1 8604 8676 26082005 26081932 1.650000e-07 69.4
42 TraesCS5A01G114400 chr3D 97.143 35 1 0 8608 8642 564489839 564489805 9.930000e-05 60.2
43 TraesCS5A01G114400 chr7B 97.248 327 9 0 2078 2404 658058608 658058934 1.040000e-153 555.0
44 TraesCS5A01G114400 chr7B 97.248 327 9 0 2078 2404 680209670 680209996 1.040000e-153 555.0
45 TraesCS5A01G114400 chr7B 96.923 325 9 1 2077 2401 435675631 435675954 2.250000e-150 544.0
46 TraesCS5A01G114400 chr7A 96.923 325 10 0 2080 2404 578998191 578997867 6.250000e-151 545.0
47 TraesCS5A01G114400 chr6A 97.205 322 9 0 2080 2401 474329066 474328745 6.250000e-151 545.0
48 TraesCS5A01G114400 chr6A 87.379 412 35 7 357 767 197864987 197865382 3.010000e-124 457.0
49 TraesCS5A01G114400 chr2A 96.626 326 11 0 2078 2403 15461106 15461431 8.090000e-150 542.0
50 TraesCS5A01G114400 chr1A 96.073 331 11 2 2076 2405 545755483 545755154 1.050000e-148 538.0
51 TraesCS5A01G114400 chr1A 96.154 52 1 1 6770 6821 464836318 464836368 5.890000e-12 84.2
52 TraesCS5A01G114400 chr1A 97.826 46 0 1 8598 8642 387052714 387052759 2.740000e-10 78.7
53 TraesCS5A01G114400 chr2B 86.650 412 39 8 357 767 546967380 546966984 8.440000e-120 442.0
54 TraesCS5A01G114400 chr2B 91.429 105 7 2 7094 7197 556202040 556201937 9.580000e-30 143.0
55 TraesCS5A01G114400 chr7D 86.441 413 35 9 357 767 311616602 311616209 5.080000e-117 433.0
56 TraesCS5A01G114400 chr1B 94.222 225 13 0 10 234 499395562 499395786 2.450000e-90 344.0
57 TraesCS5A01G114400 chr1B 93.000 100 6 1 7104 7203 315081507 315081409 2.660000e-30 145.0
58 TraesCS5A01G114400 chr1B 79.720 143 23 5 359 499 375902281 375902419 2.100000e-16 99.0
59 TraesCS5A01G114400 chr6B 94.845 97 5 0 7101 7197 694343517 694343421 1.590000e-32 152.0
60 TraesCS5A01G114400 chr6B 91.589 107 4 5 7098 7199 291177537 291177643 9.580000e-30 143.0
61 TraesCS5A01G114400 chr6B 78.838 241 26 14 310 526 199019558 199019797 1.240000e-28 139.0
62 TraesCS5A01G114400 chr4B 91.429 105 6 3 7112 7216 403623018 403622917 3.450000e-29 141.0
63 TraesCS5A01G114400 chr1D 89.474 114 9 3 7088 7198 50949136 50949023 3.450000e-29 141.0
64 TraesCS5A01G114400 chr2D 97.143 35 1 0 8608 8642 595413312 595413278 9.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G114400 chr5A 228885501 228894654 9153 True 16905.00 16905 100.00000 1 9154 1 chr5A.!!$R2 9153
1 TraesCS5A01G114400 chr5A 158753384 158754243 859 True 294.50 420 87.52200 8602 9154 2 chr5A.!!$R5 552
2 TraesCS5A01G114400 chr5D 191253349 191260762 7413 False 2457.00 8021 96.34900 765 8543 5 chr5D.!!$F2 7778
3 TraesCS5A01G114400 chr5D 191265424 191266053 629 False 433.75 787 95.94350 8550 9154 2 chr5D.!!$F3 604
4 TraesCS5A01G114400 chr5B 213471438 213477562 6124 True 2404.00 7716 95.55475 2401 8413 4 chr5B.!!$R4 6012
5 TraesCS5A01G114400 chr5B 213477554 213478857 1303 True 2034.00 2034 94.65800 765 2088 1 chr5B.!!$R3 1323
6 TraesCS5A01G114400 chr5B 247343962 247344485 523 False 641.00 641 89.26600 1 512 1 chr5B.!!$F2 511
7 TraesCS5A01G114400 chr3A 302495637 302496416 779 False 957.00 957 89.18600 1 766 1 chr3A.!!$F2 765
8 TraesCS5A01G114400 chr3B 678846486 678847269 783 False 907.00 907 87.97500 10 778 1 chr3B.!!$F3 768
9 TraesCS5A01G114400 chr3B 611890101 611890879 778 True 747.00 747 84.72200 13 768 1 chr3B.!!$R1 755
10 TraesCS5A01G114400 chr4A 740082619 740083415 796 True 797.00 797 85.67900 13 767 1 chr4A.!!$R2 754
11 TraesCS5A01G114400 chr3D 87445616 87446174 558 True 627.00 627 87.01100 8598 9154 1 chr3D.!!$R2 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 831 0.621082 GGGAGTTGGCTAGCCTCTTT 59.379 55.000 33.07 16.64 36.94 2.52 F
1022 1113 0.108281 GACCCCAAACTCCGCTCTAC 60.108 60.000 0.00 0.00 0.00 2.59 F
2176 2275 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.000 0.00 0.00 0.00 3.25 F
2363 2462 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06 F
2367 2466 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63 F
2399 2498 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36 F
3262 3371 3.187700 GGACTCCAGTAACATTGTAGCG 58.812 50.000 0.00 0.00 0.00 4.26 F
4676 4789 1.306148 GCTACCATTTTACCCTCGGC 58.694 55.000 0.00 0.00 0.00 5.54 F
5286 5408 1.246056 ACATGCTGCTGGTTGCGATT 61.246 50.000 0.00 0.00 46.63 3.34 F
5537 5659 1.279749 CCCCACCCTTCTCCCCTTAC 61.280 65.000 0.00 0.00 0.00 2.34 F
7126 7269 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 2256 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30 R
2344 2443 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55 R
3748 3858 1.722851 AGAGAAGGGTGTAGGAAGGGA 59.277 52.381 0.00 0.00 0.00 4.20 R
3950 4060 6.303054 TGGGATACTTGTGAAACTCAATTCA 58.697 36.000 0.00 0.00 38.04 2.57 R
4170 4280 8.862325 TGGACTAGAAACATAATTGTGACAAT 57.138 30.769 9.40 4.72 35.83 2.71 R
4458 4568 3.405831 TCTCCGTTTCTGAAGAGACGTA 58.594 45.455 18.50 5.75 46.91 3.57 R
5129 5250 0.386605 CTGCGAGATCTTCCGATCCG 60.387 60.000 7.93 0.98 45.83 4.18 R
6598 6740 0.179018 AGAAAACGAGCCCAAGCACT 60.179 50.000 0.00 0.00 43.56 4.40 R
6599 6741 0.668535 AAGAAAACGAGCCCAAGCAC 59.331 50.000 0.00 0.00 43.56 4.40 R
7526 7704 2.092699 TGGACAATCAACCATATCGGCA 60.093 45.455 0.00 0.00 39.03 5.69 R
8346 8681 0.108585 AAGTGCACCACGGAATCACT 59.891 50.000 14.63 0.00 39.64 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 140 4.039357 CCGTCGCTCCTCGTGTGT 62.039 66.667 0.00 0.00 39.67 3.72
150 158 1.224592 GTGCATCTCCCCAATCCGT 59.775 57.895 0.00 0.00 0.00 4.69
240 248 2.821366 CCATCTGTGGCGCTCACC 60.821 66.667 21.23 0.74 45.48 4.02
267 275 2.202557 CGTCGCCGTGCATCAGTA 60.203 61.111 0.00 0.00 0.00 2.74
287 296 2.181777 GCACCATCGAGACGCTCA 59.818 61.111 7.47 0.00 0.00 4.26
314 357 1.705186 CCTTTTCCTCTGGAAGACCCA 59.295 52.381 0.00 0.00 43.06 4.51
414 489 2.762043 GAGAAGAGGAGGCGGCCT 60.762 66.667 24.13 24.13 42.17 5.19
539 614 4.440829 GGCGGAGGGGATTGGCAA 62.441 66.667 0.68 0.68 0.00 4.52
540 615 2.362375 GCGGAGGGGATTGGCAAA 60.362 61.111 3.01 0.00 0.00 3.68
541 616 2.418083 GCGGAGGGGATTGGCAAAG 61.418 63.158 3.01 0.00 0.00 2.77
542 617 1.754234 CGGAGGGGATTGGCAAAGG 60.754 63.158 3.01 0.00 0.00 3.11
651 727 5.614013 CGTGAGGTGAAAATCGAGTTTAACC 60.614 44.000 29.58 29.58 37.12 2.85
719 796 1.829533 CCCATGAAGGCCCAATCGG 60.830 63.158 0.00 0.00 35.39 4.18
729 806 2.193248 CCAATCGGGGGAGCCTTC 59.807 66.667 0.00 0.00 0.00 3.46
730 807 2.193248 CAATCGGGGGAGCCTTCC 59.807 66.667 0.00 0.00 43.23 3.46
749 826 1.224870 GAAGGGGAGTTGGCTAGCC 59.775 63.158 27.71 27.71 0.00 3.93
752 829 1.690985 GGGGAGTTGGCTAGCCTCT 60.691 63.158 33.07 28.25 36.94 3.69
753 830 1.275421 GGGGAGTTGGCTAGCCTCTT 61.275 60.000 33.07 18.43 36.94 2.85
754 831 0.621082 GGGAGTTGGCTAGCCTCTTT 59.379 55.000 33.07 16.64 36.94 2.52
755 832 1.004862 GGGAGTTGGCTAGCCTCTTTT 59.995 52.381 33.07 14.89 36.94 2.27
756 833 2.238898 GGGAGTTGGCTAGCCTCTTTTA 59.761 50.000 33.07 10.39 36.94 1.52
757 834 3.271729 GGAGTTGGCTAGCCTCTTTTAC 58.728 50.000 33.07 19.59 36.94 2.01
758 835 3.271729 GAGTTGGCTAGCCTCTTTTACC 58.728 50.000 33.07 14.98 36.94 2.85
759 836 2.913617 AGTTGGCTAGCCTCTTTTACCT 59.086 45.455 33.07 8.05 36.94 3.08
760 837 3.330998 AGTTGGCTAGCCTCTTTTACCTT 59.669 43.478 33.07 6.57 36.94 3.50
761 838 4.079970 GTTGGCTAGCCTCTTTTACCTTT 58.920 43.478 33.07 0.00 36.94 3.11
762 839 4.382386 TGGCTAGCCTCTTTTACCTTTT 57.618 40.909 33.07 0.00 36.94 2.27
763 840 5.508280 TGGCTAGCCTCTTTTACCTTTTA 57.492 39.130 33.07 5.92 36.94 1.52
826 903 0.664166 GCACAGAACGCAACCCAATG 60.664 55.000 0.00 0.00 0.00 2.82
862 939 4.605967 CCCACAACGCACGCACAC 62.606 66.667 0.00 0.00 0.00 3.82
863 940 3.572539 CCACAACGCACGCACACT 61.573 61.111 0.00 0.00 0.00 3.55
864 941 2.351097 CACAACGCACGCACACTG 60.351 61.111 0.00 0.00 0.00 3.66
865 942 2.510464 ACAACGCACGCACACTGA 60.510 55.556 0.00 0.00 0.00 3.41
866 943 2.246397 CAACGCACGCACACTGAG 59.754 61.111 0.00 0.00 0.00 3.35
867 944 2.106131 AACGCACGCACACTGAGA 59.894 55.556 0.00 0.00 0.00 3.27
901 983 5.256474 CCGCTCCCTTTCCATAAATATGAT 58.744 41.667 1.98 0.00 35.75 2.45
1016 1107 1.378514 CCATGGACCCCAAACTCCG 60.379 63.158 5.56 0.00 36.95 4.63
1022 1113 0.108281 GACCCCAAACTCCGCTCTAC 60.108 60.000 0.00 0.00 0.00 2.59
1072 1163 8.697507 AAAGAAGGATAAAAAGAGCAAGAAGA 57.302 30.769 0.00 0.00 0.00 2.87
1073 1164 8.697507 AAGAAGGATAAAAAGAGCAAGAAGAA 57.302 30.769 0.00 0.00 0.00 2.52
1074 1165 8.334263 AGAAGGATAAAAAGAGCAAGAAGAAG 57.666 34.615 0.00 0.00 0.00 2.85
1090 1181 2.252714 AGAAGGAGAAGAAGCCGAAGT 58.747 47.619 0.00 0.00 0.00 3.01
1350 1441 1.060937 CAAGTATGCGCCGCTCAAC 59.939 57.895 11.67 5.76 0.00 3.18
1742 1833 3.243468 CCACATGTTCATTGTGCTGTCAA 60.243 43.478 0.00 0.00 42.47 3.18
1743 1834 4.552355 CACATGTTCATTGTGCTGTCAAT 58.448 39.130 0.00 0.00 38.18 2.57
2027 2126 0.558712 ACCCCCACTGCCACTTTTTA 59.441 50.000 0.00 0.00 0.00 1.52
2081 2180 4.555511 GCAGTGTTTCTGAAGTGCTTAAGG 60.556 45.833 4.29 0.00 46.27 2.69
2082 2181 4.023707 CAGTGTTTCTGAAGTGCTTAAGGG 60.024 45.833 4.29 0.00 46.27 3.95
2083 2182 2.884639 TGTTTCTGAAGTGCTTAAGGGC 59.115 45.455 4.29 0.00 0.00 5.19
2084 2183 2.884639 GTTTCTGAAGTGCTTAAGGGCA 59.115 45.455 4.29 0.00 40.15 5.36
2085 2184 3.439857 TTCTGAAGTGCTTAAGGGCAT 57.560 42.857 4.29 0.00 44.34 4.40
2086 2185 2.715046 TCTGAAGTGCTTAAGGGCATG 58.285 47.619 4.29 0.00 44.34 4.06
2087 2186 2.040278 TCTGAAGTGCTTAAGGGCATGT 59.960 45.455 4.29 0.00 44.34 3.21
2088 2187 3.263170 TCTGAAGTGCTTAAGGGCATGTA 59.737 43.478 4.29 0.00 44.34 2.29
2089 2188 3.343617 TGAAGTGCTTAAGGGCATGTAC 58.656 45.455 4.29 0.00 44.34 2.90
2090 2189 3.244735 TGAAGTGCTTAAGGGCATGTACA 60.245 43.478 4.29 0.00 44.34 2.90
2091 2190 3.433306 AGTGCTTAAGGGCATGTACAA 57.567 42.857 0.00 0.00 44.34 2.41
2092 2191 3.968265 AGTGCTTAAGGGCATGTACAAT 58.032 40.909 0.00 0.00 44.34 2.71
2093 2192 3.696051 AGTGCTTAAGGGCATGTACAATG 59.304 43.478 0.00 0.12 44.34 2.82
2094 2193 3.023119 TGCTTAAGGGCATGTACAATGG 58.977 45.455 0.00 0.00 37.29 3.16
2095 2194 3.023832 GCTTAAGGGCATGTACAATGGT 58.976 45.455 0.00 0.00 0.00 3.55
2096 2195 3.181487 GCTTAAGGGCATGTACAATGGTG 60.181 47.826 0.00 0.00 0.00 4.17
2097 2196 1.851304 AAGGGCATGTACAATGGTGG 58.149 50.000 0.00 0.00 0.00 4.61
2098 2197 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
2099 2198 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
2100 2199 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
2101 2200 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
2102 2201 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
2103 2202 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
2104 2203 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
2105 2204 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
2106 2205 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
2107 2206 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
2108 2207 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
2121 2220 2.512692 TGGATACATATGCCCCATGC 57.487 50.000 1.58 0.00 46.17 4.06
2122 2221 1.005805 TGGATACATATGCCCCATGCC 59.994 52.381 1.58 0.00 46.17 4.40
2123 2222 1.005805 GGATACATATGCCCCATGCCA 59.994 52.381 1.58 0.00 40.16 4.92
2124 2223 2.557229 GGATACATATGCCCCATGCCAA 60.557 50.000 1.58 0.00 40.16 4.52
2125 2224 2.763736 TACATATGCCCCATGCCAAA 57.236 45.000 1.58 0.00 40.16 3.28
2126 2225 1.876849 ACATATGCCCCATGCCAAAA 58.123 45.000 1.58 0.00 40.16 2.44
2127 2226 2.194859 ACATATGCCCCATGCCAAAAA 58.805 42.857 1.58 0.00 40.16 1.94
2128 2227 2.171027 ACATATGCCCCATGCCAAAAAG 59.829 45.455 1.58 0.00 40.16 2.27
2129 2228 1.949799 TATGCCCCATGCCAAAAAGT 58.050 45.000 0.00 0.00 40.16 2.66
2130 2229 1.949799 ATGCCCCATGCCAAAAAGTA 58.050 45.000 0.00 0.00 40.16 2.24
2131 2230 1.722034 TGCCCCATGCCAAAAAGTAA 58.278 45.000 0.00 0.00 40.16 2.24
2132 2231 2.264455 TGCCCCATGCCAAAAAGTAAT 58.736 42.857 0.00 0.00 40.16 1.89
2133 2232 2.641815 TGCCCCATGCCAAAAAGTAATT 59.358 40.909 0.00 0.00 40.16 1.40
2134 2233 3.073650 TGCCCCATGCCAAAAAGTAATTT 59.926 39.130 0.00 0.00 40.16 1.82
2135 2234 3.439825 GCCCCATGCCAAAAAGTAATTTG 59.560 43.478 0.00 0.00 39.47 2.32
2136 2235 4.805609 GCCCCATGCCAAAAAGTAATTTGA 60.806 41.667 1.56 0.00 41.73 2.69
2137 2236 4.937015 CCCCATGCCAAAAAGTAATTTGAG 59.063 41.667 1.56 0.00 41.73 3.02
2138 2237 4.937015 CCCATGCCAAAAAGTAATTTGAGG 59.063 41.667 1.56 3.10 41.73 3.86
2139 2238 4.392754 CCATGCCAAAAAGTAATTTGAGGC 59.607 41.667 19.06 19.06 45.91 4.70
2142 2241 5.784750 GCCAAAAAGTAATTTGAGGCATC 57.215 39.130 20.28 0.00 45.44 3.91
2143 2242 5.482006 GCCAAAAAGTAATTTGAGGCATCT 58.518 37.500 20.28 0.00 45.44 2.90
2144 2243 6.630071 GCCAAAAAGTAATTTGAGGCATCTA 58.370 36.000 20.28 0.00 45.44 1.98
2145 2244 6.531594 GCCAAAAAGTAATTTGAGGCATCTAC 59.468 38.462 20.28 0.00 45.44 2.59
2146 2245 7.601856 CCAAAAAGTAATTTGAGGCATCTACA 58.398 34.615 0.00 0.00 41.73 2.74
2147 2246 8.253113 CCAAAAAGTAATTTGAGGCATCTACAT 58.747 33.333 0.00 0.00 41.73 2.29
2148 2247 9.643693 CAAAAAGTAATTTGAGGCATCTACATT 57.356 29.630 0.00 0.00 41.73 2.71
2171 2270 2.837532 TTTTTCTCCCCAATGCAAGC 57.162 45.000 0.00 0.00 0.00 4.01
2172 2271 2.014010 TTTTCTCCCCAATGCAAGCT 57.986 45.000 0.00 0.00 0.00 3.74
2173 2272 2.897271 TTTCTCCCCAATGCAAGCTA 57.103 45.000 0.00 0.00 0.00 3.32
2174 2273 2.128771 TTCTCCCCAATGCAAGCTAC 57.871 50.000 0.00 0.00 0.00 3.58
2175 2274 0.255890 TCTCCCCAATGCAAGCTACC 59.744 55.000 0.00 0.00 0.00 3.18
2176 2275 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.000 0.00 0.00 0.00 3.25
2177 2276 0.323360 TCCCCAATGCAAGCTACCAC 60.323 55.000 0.00 0.00 0.00 4.16
2178 2277 0.323725 CCCCAATGCAAGCTACCACT 60.324 55.000 0.00 0.00 0.00 4.00
2179 2278 1.064758 CCCCAATGCAAGCTACCACTA 60.065 52.381 0.00 0.00 0.00 2.74
2180 2279 2.292267 CCCAATGCAAGCTACCACTAG 58.708 52.381 0.00 0.00 0.00 2.57
2181 2280 2.356125 CCCAATGCAAGCTACCACTAGT 60.356 50.000 0.00 0.00 0.00 2.57
2182 2281 2.679837 CCAATGCAAGCTACCACTAGTG 59.320 50.000 16.34 16.34 0.00 2.74
2196 2295 5.367945 CCACTAGTGGGCCTTATTAAGAA 57.632 43.478 31.15 0.00 46.81 2.52
2197 2296 5.751586 CCACTAGTGGGCCTTATTAAGAAA 58.248 41.667 31.15 0.00 46.81 2.52
2198 2297 6.365520 CCACTAGTGGGCCTTATTAAGAAAT 58.634 40.000 31.15 0.00 46.81 2.17
2199 2298 7.514721 CCACTAGTGGGCCTTATTAAGAAATA 58.485 38.462 31.15 0.00 46.81 1.40
2200 2299 7.661847 CCACTAGTGGGCCTTATTAAGAAATAG 59.338 40.741 31.15 1.30 46.81 1.73
2201 2300 8.429641 CACTAGTGGGCCTTATTAAGAAATAGA 58.570 37.037 15.49 0.00 0.00 1.98
2202 2301 8.999895 ACTAGTGGGCCTTATTAAGAAATAGAA 58.000 33.333 4.53 0.00 0.00 2.10
2203 2302 9.847224 CTAGTGGGCCTTATTAAGAAATAGAAA 57.153 33.333 4.53 0.00 0.00 2.52
2205 2304 9.715119 AGTGGGCCTTATTAAGAAATAGAAAAT 57.285 29.630 4.53 0.00 0.00 1.82
2230 2329 9.703892 ATAAAGACTCTAATACACATGCATCTC 57.296 33.333 0.00 0.00 0.00 2.75
2231 2330 6.975196 AGACTCTAATACACATGCATCTCT 57.025 37.500 0.00 0.00 0.00 3.10
2232 2331 8.470657 AAGACTCTAATACACATGCATCTCTA 57.529 34.615 0.00 0.00 0.00 2.43
2233 2332 7.881142 AGACTCTAATACACATGCATCTCTAC 58.119 38.462 0.00 0.00 0.00 2.59
2234 2333 7.723616 AGACTCTAATACACATGCATCTCTACT 59.276 37.037 0.00 0.00 0.00 2.57
2235 2334 8.243961 ACTCTAATACACATGCATCTCTACTT 57.756 34.615 0.00 0.00 0.00 2.24
2236 2335 8.700051 ACTCTAATACACATGCATCTCTACTTT 58.300 33.333 0.00 0.00 0.00 2.66
2237 2336 9.539825 CTCTAATACACATGCATCTCTACTTTT 57.460 33.333 0.00 0.00 0.00 2.27
2238 2337 9.890629 TCTAATACACATGCATCTCTACTTTTT 57.109 29.630 0.00 0.00 0.00 1.94
2241 2340 9.672673 AATACACATGCATCTCTACTTTTTACT 57.327 29.630 0.00 0.00 0.00 2.24
2242 2341 7.602517 ACACATGCATCTCTACTTTTTACTC 57.397 36.000 0.00 0.00 0.00 2.59
2243 2342 6.595716 ACACATGCATCTCTACTTTTTACTCC 59.404 38.462 0.00 0.00 0.00 3.85
2244 2343 6.595326 CACATGCATCTCTACTTTTTACTCCA 59.405 38.462 0.00 0.00 0.00 3.86
2245 2344 7.119699 CACATGCATCTCTACTTTTTACTCCAA 59.880 37.037 0.00 0.00 0.00 3.53
2246 2345 7.119846 ACATGCATCTCTACTTTTTACTCCAAC 59.880 37.037 0.00 0.00 0.00 3.77
2247 2346 5.938125 TGCATCTCTACTTTTTACTCCAACC 59.062 40.000 0.00 0.00 0.00 3.77
2248 2347 6.174049 GCATCTCTACTTTTTACTCCAACCT 58.826 40.000 0.00 0.00 0.00 3.50
2249 2348 6.655425 GCATCTCTACTTTTTACTCCAACCTT 59.345 38.462 0.00 0.00 0.00 3.50
2250 2349 7.175119 GCATCTCTACTTTTTACTCCAACCTTT 59.825 37.037 0.00 0.00 0.00 3.11
2251 2350 9.067986 CATCTCTACTTTTTACTCCAACCTTTT 57.932 33.333 0.00 0.00 0.00 2.27
2252 2351 8.672823 TCTCTACTTTTTACTCCAACCTTTTC 57.327 34.615 0.00 0.00 0.00 2.29
2253 2352 8.269317 TCTCTACTTTTTACTCCAACCTTTTCA 58.731 33.333 0.00 0.00 0.00 2.69
2254 2353 8.446599 TCTACTTTTTACTCCAACCTTTTCAG 57.553 34.615 0.00 0.00 0.00 3.02
2255 2354 5.902681 ACTTTTTACTCCAACCTTTTCAGC 58.097 37.500 0.00 0.00 0.00 4.26
2256 2355 5.656859 ACTTTTTACTCCAACCTTTTCAGCT 59.343 36.000 0.00 0.00 0.00 4.24
2257 2356 6.154534 ACTTTTTACTCCAACCTTTTCAGCTT 59.845 34.615 0.00 0.00 0.00 3.74
2258 2357 6.538945 TTTTACTCCAACCTTTTCAGCTTT 57.461 33.333 0.00 0.00 0.00 3.51
2259 2358 6.538945 TTTACTCCAACCTTTTCAGCTTTT 57.461 33.333 0.00 0.00 0.00 2.27
2260 2359 4.391405 ACTCCAACCTTTTCAGCTTTTG 57.609 40.909 0.00 0.00 0.00 2.44
2261 2360 3.769300 ACTCCAACCTTTTCAGCTTTTGT 59.231 39.130 0.00 0.00 0.00 2.83
2262 2361 4.142160 ACTCCAACCTTTTCAGCTTTTGTC 60.142 41.667 0.00 0.00 0.00 3.18
2263 2362 3.766591 TCCAACCTTTTCAGCTTTTGTCA 59.233 39.130 0.00 0.00 0.00 3.58
2264 2363 3.865164 CCAACCTTTTCAGCTTTTGTCAC 59.135 43.478 0.00 0.00 0.00 3.67
2265 2364 3.801114 ACCTTTTCAGCTTTTGTCACC 57.199 42.857 0.00 0.00 0.00 4.02
2266 2365 2.099098 ACCTTTTCAGCTTTTGTCACCG 59.901 45.455 0.00 0.00 0.00 4.94
2267 2366 2.543653 CCTTTTCAGCTTTTGTCACCGG 60.544 50.000 0.00 0.00 0.00 5.28
2268 2367 2.045561 TTTCAGCTTTTGTCACCGGA 57.954 45.000 9.46 0.00 0.00 5.14
2269 2368 1.305201 TTCAGCTTTTGTCACCGGAC 58.695 50.000 9.46 0.00 44.57 4.79
2270 2369 0.534203 TCAGCTTTTGTCACCGGACC 60.534 55.000 9.46 0.00 43.65 4.46
2271 2370 0.817634 CAGCTTTTGTCACCGGACCA 60.818 55.000 9.46 0.00 43.65 4.02
2272 2371 0.818040 AGCTTTTGTCACCGGACCAC 60.818 55.000 9.46 1.18 43.65 4.16
2273 2372 1.098712 GCTTTTGTCACCGGACCACA 61.099 55.000 9.46 4.37 43.65 4.17
2274 2373 0.661020 CTTTTGTCACCGGACCACAC 59.339 55.000 9.46 0.00 43.65 3.82
2275 2374 0.253610 TTTTGTCACCGGACCACACT 59.746 50.000 9.46 0.00 43.65 3.55
2276 2375 0.253610 TTTGTCACCGGACCACACTT 59.746 50.000 9.46 0.00 43.65 3.16
2277 2376 0.253610 TTGTCACCGGACCACACTTT 59.746 50.000 9.46 0.00 43.65 2.66
2278 2377 0.253610 TGTCACCGGACCACACTTTT 59.746 50.000 9.46 0.00 43.65 2.27
2279 2378 1.340211 TGTCACCGGACCACACTTTTT 60.340 47.619 9.46 0.00 43.65 1.94
2280 2379 1.332686 GTCACCGGACCACACTTTTTC 59.667 52.381 9.46 0.00 38.12 2.29
2281 2380 1.210967 TCACCGGACCACACTTTTTCT 59.789 47.619 9.46 0.00 0.00 2.52
2282 2381 1.602377 CACCGGACCACACTTTTTCTC 59.398 52.381 9.46 0.00 0.00 2.87
2283 2382 1.489230 ACCGGACCACACTTTTTCTCT 59.511 47.619 9.46 0.00 0.00 3.10
2284 2383 2.092592 ACCGGACCACACTTTTTCTCTT 60.093 45.455 9.46 0.00 0.00 2.85
2285 2384 2.548480 CCGGACCACACTTTTTCTCTTC 59.452 50.000 0.00 0.00 0.00 2.87
2286 2385 3.202906 CGGACCACACTTTTTCTCTTCA 58.797 45.455 0.00 0.00 0.00 3.02
2287 2386 3.625764 CGGACCACACTTTTTCTCTTCAA 59.374 43.478 0.00 0.00 0.00 2.69
2288 2387 4.260784 CGGACCACACTTTTTCTCTTCAAG 60.261 45.833 0.00 0.00 0.00 3.02
2289 2388 4.498177 GGACCACACTTTTTCTCTTCAAGC 60.498 45.833 0.00 0.00 0.00 4.01
2290 2389 4.016444 ACCACACTTTTTCTCTTCAAGCA 58.984 39.130 0.00 0.00 0.00 3.91
2291 2390 4.142381 ACCACACTTTTTCTCTTCAAGCAC 60.142 41.667 0.00 0.00 0.00 4.40
2292 2391 4.354587 CACACTTTTTCTCTTCAAGCACC 58.645 43.478 0.00 0.00 0.00 5.01
2293 2392 3.381590 ACACTTTTTCTCTTCAAGCACCC 59.618 43.478 0.00 0.00 0.00 4.61
2294 2393 2.618709 ACTTTTTCTCTTCAAGCACCCG 59.381 45.455 0.00 0.00 0.00 5.28
2295 2394 0.951558 TTTTCTCTTCAAGCACCCGC 59.048 50.000 0.00 0.00 38.99 6.13
2296 2395 0.889186 TTTCTCTTCAAGCACCCGCC 60.889 55.000 0.00 0.00 39.83 6.13
2297 2396 1.768684 TTCTCTTCAAGCACCCGCCT 61.769 55.000 0.00 0.00 39.83 5.52
2298 2397 1.743252 CTCTTCAAGCACCCGCCTC 60.743 63.158 0.00 0.00 39.83 4.70
2299 2398 2.747855 CTTCAAGCACCCGCCTCC 60.748 66.667 0.00 0.00 39.83 4.30
2300 2399 3.249189 TTCAAGCACCCGCCTCCT 61.249 61.111 0.00 0.00 39.83 3.69
2301 2400 3.551496 TTCAAGCACCCGCCTCCTG 62.551 63.158 0.00 0.00 39.83 3.86
2302 2401 4.020617 CAAGCACCCGCCTCCTGA 62.021 66.667 0.00 0.00 39.83 3.86
2303 2402 3.249189 AAGCACCCGCCTCCTGAA 61.249 61.111 0.00 0.00 39.83 3.02
2304 2403 3.259633 AAGCACCCGCCTCCTGAAG 62.260 63.158 0.00 0.00 39.83 3.02
2305 2404 3.706373 GCACCCGCCTCCTGAAGA 61.706 66.667 0.00 0.00 0.00 2.87
2306 2405 2.581354 CACCCGCCTCCTGAAGAG 59.419 66.667 0.00 0.00 42.83 2.85
2314 2413 3.956377 TCCTGAAGAGGATCCCGC 58.044 61.111 8.55 0.33 44.13 6.13
2315 2414 1.311403 TCCTGAAGAGGATCCCGCT 59.689 57.895 8.55 3.15 44.13 5.52
2316 2415 0.325671 TCCTGAAGAGGATCCCGCTT 60.326 55.000 15.32 15.32 45.81 4.68
2319 2418 3.648694 AAGAGGATCCCGCTTCCC 58.351 61.111 8.55 0.00 39.34 3.97
2320 2419 1.003573 AAGAGGATCCCGCTTCCCT 59.996 57.895 8.55 0.00 39.34 4.20
2321 2420 0.264955 AAGAGGATCCCGCTTCCCTA 59.735 55.000 8.55 0.00 39.34 3.53
2322 2421 0.489567 AGAGGATCCCGCTTCCCTAT 59.510 55.000 8.55 0.00 33.66 2.57
2323 2422 0.899019 GAGGATCCCGCTTCCCTATC 59.101 60.000 8.55 0.00 33.45 2.08
2324 2423 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
2325 2424 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
2326 2425 0.898789 GATCCCGCTTCCCTATCCGA 60.899 60.000 0.00 0.00 0.00 4.55
2327 2426 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
2328 2427 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
2329 2428 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
2330 2429 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
2331 2430 1.325355 CGCTTCCCTATCCGAACCTA 58.675 55.000 0.00 0.00 0.00 3.08
2332 2431 1.000496 CGCTTCCCTATCCGAACCTAC 60.000 57.143 0.00 0.00 0.00 3.18
2333 2432 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
2334 2433 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
2335 2434 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
2336 2435 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
2337 2436 5.738495 GCTTCCCTATCCGAACCTACTTTAC 60.738 48.000 0.00 0.00 0.00 2.01
2338 2437 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
2339 2438 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
2340 2439 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
2341 2440 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
2342 2441 4.996788 ATCCGAACCTACTTTACGTCAT 57.003 40.909 0.00 0.00 0.00 3.06
2343 2442 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
2344 2443 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
2345 2444 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
2346 2445 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
2347 2446 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
2348 2447 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
2349 2448 6.567321 CGAACCTACTTTACGTCATATCCGAT 60.567 42.308 0.00 0.00 0.00 4.18
2350 2449 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
2351 2450 5.182760 ACCTACTTTACGTCATATCCGATCC 59.817 44.000 0.00 0.00 0.00 3.36
2352 2451 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
2353 2452 6.596888 CCTACTTTACGTCATATCCGATCCTA 59.403 42.308 0.00 0.00 0.00 2.94
2354 2453 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
2355 2454 5.766670 ACTTTACGTCATATCCGATCCTACA 59.233 40.000 0.00 0.00 0.00 2.74
2356 2455 6.433404 ACTTTACGTCATATCCGATCCTACAT 59.567 38.462 0.00 0.00 0.00 2.29
2357 2456 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
2358 2457 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
2359 2458 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
2360 2459 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
2361 2460 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
2362 2461 2.775911 ATCCGATCCTACATGGCATG 57.224 50.000 25.31 25.31 35.26 4.06
2363 2462 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
2364 2463 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
2365 2464 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
2366 2465 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
2367 2466 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63
2368 2467 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
2387 2486 2.336945 CATCACCTTGAGGCTATGCA 57.663 50.000 0.00 0.00 39.32 3.96
2388 2487 2.860009 CATCACCTTGAGGCTATGCAT 58.140 47.619 3.79 3.79 39.32 3.96
2389 2488 3.220110 CATCACCTTGAGGCTATGCATT 58.780 45.455 3.54 0.00 39.32 3.56
2390 2489 2.646930 TCACCTTGAGGCTATGCATTG 58.353 47.619 3.54 3.55 39.32 2.82
2391 2490 2.025981 TCACCTTGAGGCTATGCATTGT 60.026 45.455 3.54 0.00 39.32 2.71
2392 2491 3.199727 TCACCTTGAGGCTATGCATTGTA 59.800 43.478 3.54 0.00 39.32 2.41
2393 2492 3.313526 CACCTTGAGGCTATGCATTGTAC 59.686 47.826 3.54 0.42 39.32 2.90
2394 2493 3.054434 ACCTTGAGGCTATGCATTGTACA 60.054 43.478 3.54 2.41 39.32 2.90
2395 2494 4.139786 CCTTGAGGCTATGCATTGTACAT 58.860 43.478 3.54 0.00 0.00 2.29
2396 2495 4.023450 CCTTGAGGCTATGCATTGTACATG 60.023 45.833 3.54 7.24 0.00 3.21
2397 2496 2.880268 TGAGGCTATGCATTGTACATGC 59.120 45.455 3.54 17.91 44.76 4.06
2398 2497 2.227388 GAGGCTATGCATTGTACATGCC 59.773 50.000 20.37 7.92 43.94 4.40
2399 2498 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36
2428 2527 4.397420 TGTGCCATTGTCAACTCTTATGT 58.603 39.130 0.00 0.00 0.00 2.29
2484 2583 3.515104 CCAATTTGACCCCACTTGCTATT 59.485 43.478 0.00 0.00 0.00 1.73
2875 2977 8.497910 TCCTATCAAAGAGTTAGCCTTATGAT 57.502 34.615 0.00 0.00 32.15 2.45
3037 3139 9.262358 AGTTGACTGTATTTCTGTTAGTTCTTC 57.738 33.333 0.00 0.00 0.00 2.87
3070 3172 8.218338 TGTGGTTGTGATTTGCAAAATAATTT 57.782 26.923 17.19 0.00 0.00 1.82
3093 3195 7.801547 TTTTCTTATACGGACGTAACTTGAG 57.198 36.000 8.75 0.00 33.99 3.02
3262 3371 3.187700 GGACTCCAGTAACATTGTAGCG 58.812 50.000 0.00 0.00 0.00 4.26
3294 3403 6.646653 TGCTTGTTTTGTTGAACATTTGTACA 59.353 30.769 0.00 0.00 39.12 2.90
3666 3776 6.861572 GGTTTGCTCATACTCTTTAAAACCAC 59.138 38.462 8.66 0.00 43.00 4.16
4153 4263 3.519107 TGCAGGGTCTGTTCTATCATTGA 59.481 43.478 0.00 0.00 33.43 2.57
4458 4568 6.494491 TCAAGACAGAATCCCATTTGTGAAAT 59.506 34.615 0.00 0.00 0.00 2.17
4676 4789 1.306148 GCTACCATTTTACCCTCGGC 58.694 55.000 0.00 0.00 0.00 5.54
4860 4980 9.627123 TTACTGCTTATCAATGCCTATACTTTT 57.373 29.630 0.00 0.00 0.00 2.27
5092 5213 5.954150 ACCTTTCATGATACCTGATTGCTTT 59.046 36.000 0.00 0.00 0.00 3.51
5129 5250 4.563061 ACACCTTATCGTAGGTTGTTGTC 58.437 43.478 4.31 0.00 46.39 3.18
5286 5408 1.246056 ACATGCTGCTGGTTGCGATT 61.246 50.000 0.00 0.00 46.63 3.34
5407 5529 3.718956 ACCTATCCCCCTCTCAGATTTTG 59.281 47.826 0.00 0.00 0.00 2.44
5428 5550 8.746052 TTTTGAACTTCAGATTCCTAGTTTGA 57.254 30.769 0.00 0.00 31.41 2.69
5537 5659 1.279749 CCCCACCCTTCTCCCCTTAC 61.280 65.000 0.00 0.00 0.00 2.34
5577 5699 2.851195 ACAATTGGCGGATCCATACTC 58.149 47.619 13.41 0.00 46.04 2.59
6138 6260 8.814038 AATGGTATGCTTATTCTCTGACTTTT 57.186 30.769 0.00 0.00 0.00 2.27
6202 6324 5.324409 ACATGACCTCTTCCTTATTTTGCA 58.676 37.500 0.00 0.00 0.00 4.08
6382 6504 8.668510 AATCACGATATTAAGTCTCAGCATTT 57.331 30.769 0.00 0.00 0.00 2.32
6383 6505 8.668510 ATCACGATATTAAGTCTCAGCATTTT 57.331 30.769 0.00 0.00 0.00 1.82
6397 6535 9.305925 GTCTCAGCATTTTATCCTTTATTTTGG 57.694 33.333 0.00 0.00 0.00 3.28
6421 6559 6.127647 GGTTTTCATCCTATGATTTGTCAGCA 60.128 38.462 0.00 0.00 39.39 4.41
6543 6681 6.712095 ACTAGAGTGAATCATGTTTGCTCAAA 59.288 34.615 14.81 0.00 0.00 2.69
7077 7220 9.500785 CTTGAGATCATGTATAGACTAGAGACA 57.499 37.037 0.00 0.00 0.00 3.41
7117 7260 8.693625 AGTGTTATAAGTTACTCATGTACTCCC 58.306 37.037 0.00 0.00 0.00 4.30
7118 7261 8.693625 GTGTTATAAGTTACTCATGTACTCCCT 58.306 37.037 0.00 0.00 0.00 4.20
7119 7262 8.910944 TGTTATAAGTTACTCATGTACTCCCTC 58.089 37.037 0.00 0.00 0.00 4.30
7120 7263 6.980416 ATAAGTTACTCATGTACTCCCTCC 57.020 41.667 0.00 0.00 0.00 4.30
7121 7264 3.288964 AGTTACTCATGTACTCCCTCCG 58.711 50.000 0.00 0.00 0.00 4.63
7122 7265 3.022406 GTTACTCATGTACTCCCTCCGT 58.978 50.000 0.00 0.00 0.00 4.69
7123 7266 2.233305 ACTCATGTACTCCCTCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
7124 7267 2.100989 ACTCATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 0.00 3.95
7125 7268 1.409427 CTCATGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
7126 7269 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
7127 7270 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
7128 7271 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
7129 7272 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
7130 7273 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
7131 7274 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
7132 7275 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7133 7276 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7134 7277 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7135 7278 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7136 7279 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7137 7280 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7138 7281 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
7139 7282 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
7140 7283 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
7141 7284 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
7142 7285 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
7143 7286 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
7144 7287 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
7145 7288 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
7146 7289 6.834168 TCCAAAATAGATGACCCAACTTTC 57.166 37.500 0.00 0.00 0.00 2.62
7147 7290 6.552008 TCCAAAATAGATGACCCAACTTTCT 58.448 36.000 0.00 0.00 0.00 2.52
7148 7291 7.695055 TCCAAAATAGATGACCCAACTTTCTA 58.305 34.615 0.00 0.00 0.00 2.10
7149 7292 8.336235 TCCAAAATAGATGACCCAACTTTCTAT 58.664 33.333 0.00 0.00 0.00 1.98
7150 7293 8.971073 CCAAAATAGATGACCCAACTTTCTATT 58.029 33.333 0.00 0.00 32.39 1.73
7187 7330 8.970691 AAAATTGAGTCATCTATTTTGGAACG 57.029 30.769 11.47 0.00 44.08 3.95
7188 7331 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
7189 7332 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
7190 7333 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
7191 7334 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
7192 7335 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7193 7336 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7459 7604 2.507058 ACACATGGTATGGACAGATGCT 59.493 45.455 0.00 0.00 33.60 3.79
7462 7607 3.949754 ACATGGTATGGACAGATGCTTTG 59.050 43.478 0.00 0.00 33.60 2.77
7463 7608 3.719268 TGGTATGGACAGATGCTTTGT 57.281 42.857 0.00 0.00 0.00 2.83
7465 7610 3.264193 TGGTATGGACAGATGCTTTGTCT 59.736 43.478 13.01 0.00 43.44 3.41
7466 7611 3.624861 GGTATGGACAGATGCTTTGTCTG 59.375 47.826 13.01 10.18 46.60 3.51
7467 7612 3.708403 ATGGACAGATGCTTTGTCTGA 57.292 42.857 9.86 4.30 44.57 3.27
7468 7613 3.708403 TGGACAGATGCTTTGTCTGAT 57.292 42.857 9.86 0.00 44.57 2.90
7470 7615 5.164620 TGGACAGATGCTTTGTCTGATAA 57.835 39.130 9.86 0.00 44.57 1.75
7471 7616 5.748402 TGGACAGATGCTTTGTCTGATAAT 58.252 37.500 9.86 0.00 44.57 1.28
7472 7617 6.888105 TGGACAGATGCTTTGTCTGATAATA 58.112 36.000 9.86 0.00 44.57 0.98
7473 7618 6.763135 TGGACAGATGCTTTGTCTGATAATAC 59.237 38.462 9.86 0.00 44.57 1.89
7474 7619 6.203723 GGACAGATGCTTTGTCTGATAATACC 59.796 42.308 9.86 0.00 44.57 2.73
7526 7704 8.519799 CCATATGGTAAGTTGGTAAGATGTTT 57.480 34.615 14.09 0.00 0.00 2.83
7612 7790 9.099071 TGGGGGAAATTGTATATGAAATTATGG 57.901 33.333 0.00 0.00 0.00 2.74
7613 7791 8.539544 GGGGGAAATTGTATATGAAATTATGGG 58.460 37.037 0.00 0.00 0.00 4.00
7866 8200 4.584743 ACCTGGGAAAACTGTGAAAATCTC 59.415 41.667 0.00 0.00 0.00 2.75
8200 8534 8.946085 TGGTCATACAACAGTAGAAAATTCATC 58.054 33.333 0.00 0.00 0.00 2.92
8340 8675 2.526304 TCGGCAGCCTATTATGTCAC 57.474 50.000 10.54 0.00 0.00 3.67
8346 8681 4.380531 GCAGCCTATTATGTCACAAGCTA 58.619 43.478 0.00 0.00 0.00 3.32
8392 8731 2.877097 TCCTTGGAATTGCTGCACTA 57.123 45.000 0.00 0.00 0.00 2.74
8510 8887 0.678048 AAGGGCATCTCCAACGCTTC 60.678 55.000 0.00 0.00 36.21 3.86
8522 8899 5.763204 TCTCCAACGCTTCAAGTTTATTTCT 59.237 36.000 0.00 0.00 0.00 2.52
8662 9060 4.657969 TGGGGGTTTCTCAAACAAATGATT 59.342 37.500 1.78 0.00 43.15 2.57
8704 9103 5.065914 TGCTTTGGGTAGAGATGATAATGC 58.934 41.667 0.00 0.00 0.00 3.56
8726 9428 4.436050 GCAATGTGTCTCTTCGGTTACATG 60.436 45.833 0.00 0.00 0.00 3.21
8739 9441 7.552687 TCTTCGGTTACATGCAGAATAAGATTT 59.447 33.333 0.00 0.00 0.00 2.17
8785 9487 6.553852 AGTTATACCCACACGAGGATTAAGAT 59.446 38.462 0.00 0.00 0.00 2.40
8830 9532 5.833406 TCTGTTTTTGATTTGCACAGAGA 57.167 34.783 0.00 0.00 39.12 3.10
8834 9536 6.441274 TGTTTTTGATTTGCACAGAGAGATC 58.559 36.000 0.00 0.00 0.00 2.75
8878 9583 3.338250 TGGGCGGATTGGAAGGCT 61.338 61.111 0.00 0.00 0.00 4.58
8880 9585 1.682344 GGGCGGATTGGAAGGCTTT 60.682 57.895 0.00 0.00 0.00 3.51
8881 9586 1.257750 GGGCGGATTGGAAGGCTTTT 61.258 55.000 0.00 0.00 0.00 2.27
8916 9621 5.873712 AGATGCACCATCGATATCTCATTTC 59.126 40.000 0.00 0.00 44.67 2.17
8933 9638 2.910688 TTCCTCTTTGCAGACGACTT 57.089 45.000 0.00 0.00 0.00 3.01
8972 9677 6.380095 AGCAAATGTTCAAAATGCAAACAT 57.620 29.167 7.70 7.70 43.53 2.71
8985 9690 2.157738 GCAAACATGCTGAGGAGAGTT 58.842 47.619 0.00 0.00 0.00 3.01
9019 9724 2.622942 TGTGAAAGTTCTGGGCAATGTC 59.377 45.455 0.00 0.00 0.00 3.06
9105 9810 9.643693 GATGTATGTTGAAATCTGGACATTTTT 57.356 29.630 0.00 0.00 34.76 1.94
9111 9816 8.859090 TGTTGAAATCTGGACATTTTTACTGAT 58.141 29.630 0.00 0.00 0.00 2.90
9133 9838 7.506114 TGATGCCTTAACGGATAAGTATCTTT 58.494 34.615 14.56 0.00 39.56 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.733443 TCGATGAGGTATGACATGGTG 57.267 47.619 0.00 0.00 0.00 4.17
11 12 4.221482 CCCTGATTCATCGATGAGGTATGA 59.779 45.833 25.95 12.45 38.19 2.15
133 140 1.224315 CACGGATTGGGGAGATGCA 59.776 57.895 0.00 0.00 0.00 3.96
267 275 2.125512 GCGTCTCGATGGTGCCTT 60.126 61.111 0.00 0.00 0.00 4.35
287 296 3.154827 TCCAGAGGAAAAGGCGAAATT 57.845 42.857 0.00 0.00 0.00 1.82
385 431 1.878656 CTCTTCTCCCCGCGTTGTCT 61.879 60.000 4.92 0.00 0.00 3.41
414 489 0.753479 CTCTTCTCCTGGCTCGCCTA 60.753 60.000 9.65 0.00 36.94 3.93
422 497 3.474570 CCGCCCCTCTTCTCCTGG 61.475 72.222 0.00 0.00 0.00 4.45
450 525 2.912542 CCCGCTCGCTCCATCCTA 60.913 66.667 0.00 0.00 0.00 2.94
651 727 3.152261 AGCCGTTAGATCTTCAGAACG 57.848 47.619 17.64 17.64 43.21 3.95
729 806 1.522569 CTAGCCAACTCCCCTTCGG 59.477 63.158 0.00 0.00 0.00 4.30
730 807 1.153349 GCTAGCCAACTCCCCTTCG 60.153 63.158 2.29 0.00 0.00 3.79
732 809 1.229984 AGGCTAGCCAACTCCCCTT 60.230 57.895 34.70 8.63 38.92 3.95
736 813 2.498644 AAAAGAGGCTAGCCAACTCC 57.501 50.000 34.70 17.35 38.92 3.85
826 903 1.503542 CTTCGCAATGTGGGCTGAC 59.496 57.895 0.00 0.00 0.00 3.51
862 939 0.319727 GCGGCTGGATCTCATCTCAG 60.320 60.000 0.00 0.00 33.49 3.35
863 940 0.758310 AGCGGCTGGATCTCATCTCA 60.758 55.000 0.00 0.00 0.00 3.27
864 941 0.038343 GAGCGGCTGGATCTCATCTC 60.038 60.000 7.50 0.00 0.00 2.75
865 942 1.470996 GGAGCGGCTGGATCTCATCT 61.471 60.000 7.50 0.00 0.00 2.90
866 943 1.005156 GGAGCGGCTGGATCTCATC 60.005 63.158 7.50 0.00 0.00 2.92
867 944 2.515071 GGGAGCGGCTGGATCTCAT 61.515 63.158 7.50 0.00 29.75 2.90
901 983 5.531659 TGATTTTAGGGCACTACGTGAAAAA 59.468 36.000 0.00 0.00 35.23 1.94
1022 1113 1.026718 GTTGGATGGTTCCTCCTGCG 61.027 60.000 8.14 0.00 43.07 5.18
1042 1133 7.913674 TGCTCTTTTTATCCTTCTTTCTCTC 57.086 36.000 0.00 0.00 0.00 3.20
1072 1163 1.971357 TGACTTCGGCTTCTTCTCCTT 59.029 47.619 0.00 0.00 0.00 3.36
1073 1164 1.548269 CTGACTTCGGCTTCTTCTCCT 59.452 52.381 0.00 0.00 0.00 3.69
1074 1165 2.003196 CTGACTTCGGCTTCTTCTCC 57.997 55.000 0.00 0.00 0.00 3.71
1118 1209 3.458163 CCTCCTGTTCCGCCGCTA 61.458 66.667 0.00 0.00 0.00 4.26
1169 1260 1.416401 TCCGCTTCTTGTCCTTCTTGT 59.584 47.619 0.00 0.00 0.00 3.16
1416 1507 3.866582 GCTAGCGCCTGGATGGGT 61.867 66.667 2.29 0.00 36.00 4.51
1722 1813 4.859304 ATTGACAGCACAATGAACATGT 57.141 36.364 0.00 0.00 38.76 3.21
1742 1833 7.537596 TCTACCCAAACATTGAAAATGACAT 57.462 32.000 6.96 0.00 0.00 3.06
1743 1834 6.968263 TCTACCCAAACATTGAAAATGACA 57.032 33.333 6.96 0.00 0.00 3.58
1744 1835 6.311200 GCATCTACCCAAACATTGAAAATGAC 59.689 38.462 6.96 0.00 0.00 3.06
1745 1836 6.211184 AGCATCTACCCAAACATTGAAAATGA 59.789 34.615 6.96 0.00 0.00 2.57
1746 1837 6.400568 AGCATCTACCCAAACATTGAAAATG 58.599 36.000 0.00 0.00 0.00 2.32
1747 1838 6.610075 AGCATCTACCCAAACATTGAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
2081 2180 1.113788 ATGCCACCATTGTACATGCC 58.886 50.000 0.00 0.00 0.00 4.40
2082 2181 3.305539 CCATATGCCACCATTGTACATGC 60.306 47.826 0.00 0.00 32.85 4.06
2083 2182 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
2084 2183 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
2085 2184 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
2086 2185 5.312895 TGTATCCATATGCCACCATTGTAC 58.687 41.667 0.00 0.00 32.85 2.90
2087 2186 5.574970 TGTATCCATATGCCACCATTGTA 57.425 39.130 0.00 0.00 32.85 2.41
2088 2187 4.451891 TGTATCCATATGCCACCATTGT 57.548 40.909 0.00 0.00 32.85 2.71
2099 2198 4.733165 GCATGGGGCATATGTATCCATAT 58.267 43.478 19.04 9.16 43.54 1.78
2100 2199 4.169059 GCATGGGGCATATGTATCCATA 57.831 45.455 19.04 7.78 43.97 2.74
2101 2200 3.022557 GCATGGGGCATATGTATCCAT 57.977 47.619 15.86 15.86 43.97 3.41
2102 2201 2.512692 GCATGGGGCATATGTATCCA 57.487 50.000 13.42 13.42 43.97 3.41
2103 2202 1.005805 TGGCATGGGGCATATGTATCC 59.994 52.381 4.29 4.59 45.76 2.59
2104 2203 2.512692 TGGCATGGGGCATATGTATC 57.487 50.000 4.29 0.00 45.76 2.24
2113 2212 3.348647 AATTACTTTTTGGCATGGGGC 57.651 42.857 0.00 0.00 43.74 5.80
2114 2213 4.904241 TCAAATTACTTTTTGGCATGGGG 58.096 39.130 0.00 0.00 37.23 4.96
2115 2214 4.937015 CCTCAAATTACTTTTTGGCATGGG 59.063 41.667 0.00 0.00 37.23 4.00
2116 2215 4.392754 GCCTCAAATTACTTTTTGGCATGG 59.607 41.667 11.34 0.00 40.95 3.66
2117 2216 4.996122 TGCCTCAAATTACTTTTTGGCATG 59.004 37.500 13.66 0.00 43.60 4.06
2118 2217 5.226194 TGCCTCAAATTACTTTTTGGCAT 57.774 34.783 13.66 0.00 43.60 4.40
2119 2218 4.679373 TGCCTCAAATTACTTTTTGGCA 57.321 36.364 13.66 13.66 44.97 4.92
2120 2219 5.482006 AGATGCCTCAAATTACTTTTTGGC 58.518 37.500 10.01 10.01 41.33 4.52
2121 2220 7.601856 TGTAGATGCCTCAAATTACTTTTTGG 58.398 34.615 0.00 0.00 37.23 3.28
2122 2221 9.643693 AATGTAGATGCCTCAAATTACTTTTTG 57.356 29.630 0.00 0.00 37.83 2.44
2152 2251 2.328319 AGCTTGCATTGGGGAGAAAAA 58.672 42.857 0.00 0.00 0.00 1.94
2153 2252 2.014010 AGCTTGCATTGGGGAGAAAA 57.986 45.000 0.00 0.00 0.00 2.29
2154 2253 2.446435 GTAGCTTGCATTGGGGAGAAA 58.554 47.619 0.00 0.00 0.00 2.52
2155 2254 1.340991 GGTAGCTTGCATTGGGGAGAA 60.341 52.381 0.00 0.00 0.00 2.87
2156 2255 0.255890 GGTAGCTTGCATTGGGGAGA 59.744 55.000 0.00 0.00 0.00 3.71
2157 2256 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
2158 2257 0.323360 GTGGTAGCTTGCATTGGGGA 60.323 55.000 0.00 0.00 0.00 4.81
2159 2258 0.323725 AGTGGTAGCTTGCATTGGGG 60.324 55.000 0.00 0.00 0.00 4.96
2160 2259 2.292267 CTAGTGGTAGCTTGCATTGGG 58.708 52.381 0.00 0.00 0.00 4.12
2161 2260 2.679837 CACTAGTGGTAGCTTGCATTGG 59.320 50.000 15.49 0.00 0.00 3.16
2162 2261 2.679837 CCACTAGTGGTAGCTTGCATTG 59.320 50.000 30.57 3.32 45.53 2.82
2163 2262 2.991250 CCACTAGTGGTAGCTTGCATT 58.009 47.619 30.57 0.00 45.53 3.56
2164 2263 2.698855 CCACTAGTGGTAGCTTGCAT 57.301 50.000 30.57 0.00 45.53 3.96
2175 2274 8.429641 TCTATTTCTTAATAAGGCCCACTAGTG 58.570 37.037 16.34 16.34 0.00 2.74
2176 2275 8.562949 TCTATTTCTTAATAAGGCCCACTAGT 57.437 34.615 0.00 0.00 0.00 2.57
2177 2276 9.847224 TTTCTATTTCTTAATAAGGCCCACTAG 57.153 33.333 0.00 0.00 0.00 2.57
2179 2278 9.715119 ATTTTCTATTTCTTAATAAGGCCCACT 57.285 29.630 0.00 0.00 0.00 4.00
2204 2303 9.703892 GAGATGCATGTGTATTAGAGTCTTTAT 57.296 33.333 2.46 0.00 0.00 1.40
2205 2304 8.918116 AGAGATGCATGTGTATTAGAGTCTTTA 58.082 33.333 2.46 0.00 0.00 1.85
2206 2305 7.790027 AGAGATGCATGTGTATTAGAGTCTTT 58.210 34.615 2.46 0.00 0.00 2.52
2207 2306 7.358770 AGAGATGCATGTGTATTAGAGTCTT 57.641 36.000 2.46 0.00 0.00 3.01
2208 2307 6.975196 AGAGATGCATGTGTATTAGAGTCT 57.025 37.500 2.46 0.00 0.00 3.24
2209 2308 7.881142 AGTAGAGATGCATGTGTATTAGAGTC 58.119 38.462 2.46 0.00 0.00 3.36
2210 2309 7.831691 AGTAGAGATGCATGTGTATTAGAGT 57.168 36.000 2.46 0.00 0.00 3.24
2211 2310 9.539825 AAAAGTAGAGATGCATGTGTATTAGAG 57.460 33.333 2.46 0.00 0.00 2.43
2212 2311 9.890629 AAAAAGTAGAGATGCATGTGTATTAGA 57.109 29.630 2.46 0.00 0.00 2.10
2215 2314 9.672673 AGTAAAAAGTAGAGATGCATGTGTATT 57.327 29.630 2.46 0.00 0.00 1.89
2216 2315 9.319143 GAGTAAAAAGTAGAGATGCATGTGTAT 57.681 33.333 2.46 0.00 0.00 2.29
2217 2316 7.764443 GGAGTAAAAAGTAGAGATGCATGTGTA 59.236 37.037 2.46 0.00 0.00 2.90
2218 2317 6.595716 GGAGTAAAAAGTAGAGATGCATGTGT 59.404 38.462 2.46 0.00 0.00 3.72
2219 2318 6.595326 TGGAGTAAAAAGTAGAGATGCATGTG 59.405 38.462 2.46 0.00 0.00 3.21
2220 2319 6.711277 TGGAGTAAAAAGTAGAGATGCATGT 58.289 36.000 2.46 0.00 0.00 3.21
2221 2320 7.414540 GGTTGGAGTAAAAAGTAGAGATGCATG 60.415 40.741 2.46 0.00 0.00 4.06
2222 2321 6.599638 GGTTGGAGTAAAAAGTAGAGATGCAT 59.400 38.462 0.00 0.00 0.00 3.96
2223 2322 5.938125 GGTTGGAGTAAAAAGTAGAGATGCA 59.062 40.000 0.00 0.00 0.00 3.96
2224 2323 6.174049 AGGTTGGAGTAAAAAGTAGAGATGC 58.826 40.000 0.00 0.00 0.00 3.91
2225 2324 8.622948 AAAGGTTGGAGTAAAAAGTAGAGATG 57.377 34.615 0.00 0.00 0.00 2.90
2226 2325 9.286170 GAAAAGGTTGGAGTAAAAAGTAGAGAT 57.714 33.333 0.00 0.00 0.00 2.75
2227 2326 8.269317 TGAAAAGGTTGGAGTAAAAAGTAGAGA 58.731 33.333 0.00 0.00 0.00 3.10
2228 2327 8.446599 TGAAAAGGTTGGAGTAAAAAGTAGAG 57.553 34.615 0.00 0.00 0.00 2.43
2229 2328 7.012989 GCTGAAAAGGTTGGAGTAAAAAGTAGA 59.987 37.037 0.00 0.00 0.00 2.59
2230 2329 7.013369 AGCTGAAAAGGTTGGAGTAAAAAGTAG 59.987 37.037 0.00 0.00 0.00 2.57
2231 2330 6.831868 AGCTGAAAAGGTTGGAGTAAAAAGTA 59.168 34.615 0.00 0.00 0.00 2.24
2232 2331 5.656859 AGCTGAAAAGGTTGGAGTAAAAAGT 59.343 36.000 0.00 0.00 0.00 2.66
2233 2332 6.149129 AGCTGAAAAGGTTGGAGTAAAAAG 57.851 37.500 0.00 0.00 0.00 2.27
2234 2333 6.538945 AAGCTGAAAAGGTTGGAGTAAAAA 57.461 33.333 0.00 0.00 0.00 1.94
2235 2334 6.538945 AAAGCTGAAAAGGTTGGAGTAAAA 57.461 33.333 0.00 0.00 0.00 1.52
2236 2335 6.071051 ACAAAAGCTGAAAAGGTTGGAGTAAA 60.071 34.615 0.00 0.00 0.00 2.01
2237 2336 5.420739 ACAAAAGCTGAAAAGGTTGGAGTAA 59.579 36.000 0.00 0.00 0.00 2.24
2238 2337 4.953579 ACAAAAGCTGAAAAGGTTGGAGTA 59.046 37.500 0.00 0.00 0.00 2.59
2239 2338 3.769300 ACAAAAGCTGAAAAGGTTGGAGT 59.231 39.130 0.00 0.00 0.00 3.85
2240 2339 4.142182 TGACAAAAGCTGAAAAGGTTGGAG 60.142 41.667 0.00 0.00 0.00 3.86
2241 2340 3.766591 TGACAAAAGCTGAAAAGGTTGGA 59.233 39.130 0.00 0.00 0.00 3.53
2242 2341 3.865164 GTGACAAAAGCTGAAAAGGTTGG 59.135 43.478 0.00 0.00 0.00 3.77
2243 2342 3.865164 GGTGACAAAAGCTGAAAAGGTTG 59.135 43.478 0.00 0.00 0.00 3.77
2244 2343 3.428862 CGGTGACAAAAGCTGAAAAGGTT 60.429 43.478 0.00 0.00 0.00 3.50
2245 2344 2.099098 CGGTGACAAAAGCTGAAAAGGT 59.901 45.455 0.00 0.00 0.00 3.50
2246 2345 2.543653 CCGGTGACAAAAGCTGAAAAGG 60.544 50.000 0.00 0.00 0.00 3.11
2247 2346 2.357637 TCCGGTGACAAAAGCTGAAAAG 59.642 45.455 0.00 0.00 0.00 2.27
2248 2347 2.098443 GTCCGGTGACAAAAGCTGAAAA 59.902 45.455 0.00 0.00 41.37 2.29
2249 2348 1.673920 GTCCGGTGACAAAAGCTGAAA 59.326 47.619 0.00 0.00 41.37 2.69
2250 2349 1.305201 GTCCGGTGACAAAAGCTGAA 58.695 50.000 0.00 0.00 41.37 3.02
2251 2350 0.534203 GGTCCGGTGACAAAAGCTGA 60.534 55.000 0.00 0.00 43.65 4.26
2252 2351 0.817634 TGGTCCGGTGACAAAAGCTG 60.818 55.000 0.00 0.00 43.65 4.24
2253 2352 0.818040 GTGGTCCGGTGACAAAAGCT 60.818 55.000 0.00 0.00 43.65 3.74
2254 2353 1.098712 TGTGGTCCGGTGACAAAAGC 61.099 55.000 0.00 0.00 43.65 3.51
2255 2354 0.661020 GTGTGGTCCGGTGACAAAAG 59.339 55.000 0.00 0.00 43.65 2.27
2256 2355 0.253610 AGTGTGGTCCGGTGACAAAA 59.746 50.000 0.00 0.00 43.65 2.44
2257 2356 0.253610 AAGTGTGGTCCGGTGACAAA 59.746 50.000 0.00 0.00 43.65 2.83
2258 2357 0.253610 AAAGTGTGGTCCGGTGACAA 59.746 50.000 0.00 0.00 43.65 3.18
2259 2358 0.253610 AAAAGTGTGGTCCGGTGACA 59.746 50.000 0.00 0.00 43.65 3.58
2260 2359 1.332686 GAAAAAGTGTGGTCCGGTGAC 59.667 52.381 0.00 0.00 40.98 3.67
2261 2360 1.210967 AGAAAAAGTGTGGTCCGGTGA 59.789 47.619 0.00 0.00 0.00 4.02
2262 2361 1.602377 GAGAAAAAGTGTGGTCCGGTG 59.398 52.381 0.00 0.00 0.00 4.94
2263 2362 1.489230 AGAGAAAAAGTGTGGTCCGGT 59.511 47.619 0.00 0.00 0.00 5.28
2264 2363 2.256117 AGAGAAAAAGTGTGGTCCGG 57.744 50.000 0.00 0.00 0.00 5.14
2265 2364 3.202906 TGAAGAGAAAAAGTGTGGTCCG 58.797 45.455 0.00 0.00 0.00 4.79
2266 2365 4.498177 GCTTGAAGAGAAAAAGTGTGGTCC 60.498 45.833 0.00 0.00 0.00 4.46
2267 2366 4.096382 TGCTTGAAGAGAAAAAGTGTGGTC 59.904 41.667 0.00 0.00 0.00 4.02
2268 2367 4.016444 TGCTTGAAGAGAAAAAGTGTGGT 58.984 39.130 0.00 0.00 0.00 4.16
2269 2368 4.354587 GTGCTTGAAGAGAAAAAGTGTGG 58.645 43.478 0.00 0.00 0.00 4.17
2270 2369 4.354587 GGTGCTTGAAGAGAAAAAGTGTG 58.645 43.478 0.00 0.00 0.00 3.82
2271 2370 3.381590 GGGTGCTTGAAGAGAAAAAGTGT 59.618 43.478 0.00 0.00 0.00 3.55
2272 2371 3.548818 CGGGTGCTTGAAGAGAAAAAGTG 60.549 47.826 0.00 0.00 0.00 3.16
2273 2372 2.618709 CGGGTGCTTGAAGAGAAAAAGT 59.381 45.455 0.00 0.00 0.00 2.66
2274 2373 2.605580 GCGGGTGCTTGAAGAGAAAAAG 60.606 50.000 0.00 0.00 38.39 2.27
2275 2374 1.336755 GCGGGTGCTTGAAGAGAAAAA 59.663 47.619 0.00 0.00 38.39 1.94
2276 2375 0.951558 GCGGGTGCTTGAAGAGAAAA 59.048 50.000 0.00 0.00 38.39 2.29
2277 2376 0.889186 GGCGGGTGCTTGAAGAGAAA 60.889 55.000 0.00 0.00 42.25 2.52
2278 2377 1.302511 GGCGGGTGCTTGAAGAGAA 60.303 57.895 0.00 0.00 42.25 2.87
2279 2378 2.172483 GAGGCGGGTGCTTGAAGAGA 62.172 60.000 0.00 0.00 42.25 3.10
2280 2379 1.743252 GAGGCGGGTGCTTGAAGAG 60.743 63.158 0.00 0.00 42.25 2.85
2281 2380 2.347490 GAGGCGGGTGCTTGAAGA 59.653 61.111 0.00 0.00 42.25 2.87
2282 2381 2.747855 GGAGGCGGGTGCTTGAAG 60.748 66.667 0.00 0.00 42.25 3.02
2283 2382 3.249189 AGGAGGCGGGTGCTTGAA 61.249 61.111 0.00 0.00 42.25 2.69
2284 2383 4.020617 CAGGAGGCGGGTGCTTGA 62.021 66.667 0.00 0.00 42.25 3.02
2285 2384 3.551496 TTCAGGAGGCGGGTGCTTG 62.551 63.158 0.00 0.00 42.25 4.01
2286 2385 3.249189 TTCAGGAGGCGGGTGCTT 61.249 61.111 0.00 0.00 42.25 3.91
2287 2386 3.710722 CTTCAGGAGGCGGGTGCT 61.711 66.667 0.00 0.00 42.25 4.40
2288 2387 3.672295 CTCTTCAGGAGGCGGGTGC 62.672 68.421 0.00 0.00 38.35 5.01
2289 2388 2.581354 CTCTTCAGGAGGCGGGTG 59.419 66.667 0.00 0.00 38.35 4.61
2298 2397 0.105778 GAAGCGGGATCCTCTTCAGG 59.894 60.000 27.44 8.16 42.01 3.86
2299 2398 0.105778 GGAAGCGGGATCCTCTTCAG 59.894 60.000 30.35 13.19 38.29 3.02
2300 2399 1.338136 GGGAAGCGGGATCCTCTTCA 61.338 60.000 30.35 0.00 38.29 3.02
2301 2400 1.051556 AGGGAAGCGGGATCCTCTTC 61.052 60.000 25.83 25.83 37.14 2.87
2302 2401 0.264955 TAGGGAAGCGGGATCCTCTT 59.735 55.000 12.58 14.81 37.14 2.85
2303 2402 0.489567 ATAGGGAAGCGGGATCCTCT 59.510 55.000 12.58 6.48 37.14 3.69
2304 2403 0.899019 GATAGGGAAGCGGGATCCTC 59.101 60.000 12.58 4.01 37.14 3.71
2305 2404 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
2306 2405 1.889530 CGGATAGGGAAGCGGGATCC 61.890 65.000 1.92 1.92 36.16 3.36
2307 2406 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
2308 2407 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
2309 2408 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
2310 2409 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
2311 2410 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
2312 2411 1.000496 GTAGGTTCGGATAGGGAAGCG 60.000 57.143 0.00 0.00 44.35 4.68
2313 2412 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
2314 2413 5.506982 CGTAAAGTAGGTTCGGATAGGGAAG 60.507 48.000 0.00 0.00 0.00 3.46
2315 2414 4.339247 CGTAAAGTAGGTTCGGATAGGGAA 59.661 45.833 0.00 0.00 0.00 3.97
2316 2415 3.885297 CGTAAAGTAGGTTCGGATAGGGA 59.115 47.826 0.00 0.00 0.00 4.20
2317 2416 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
2318 2417 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
2319 2418 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
2320 2419 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
2321 2420 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
2322 2421 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
2323 2422 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
2324 2423 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
2325 2424 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
2326 2425 6.294397 GGATCGGATATGACGTAAAGTAGGTT 60.294 42.308 0.00 0.00 0.00 3.50
2327 2426 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
2328 2427 5.415077 AGGATCGGATATGACGTAAAGTAGG 59.585 44.000 0.00 0.00 0.00 3.18
2329 2428 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
2330 2429 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
2331 2430 5.766670 TGTAGGATCGGATATGACGTAAAGT 59.233 40.000 0.00 0.00 0.00 2.66
2332 2431 6.250344 TGTAGGATCGGATATGACGTAAAG 57.750 41.667 0.00 0.00 0.00 1.85
2333 2432 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
2334 2433 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
2335 2434 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
2336 2435 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
2337 2436 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
2338 2437 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
2339 2438 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
2340 2439 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
2341 2440 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
2342 2441 2.093500 GCATGCCATGTAGGATCGGATA 60.093 50.000 6.36 0.00 41.22 2.59
2343 2442 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
2344 2443 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55
2345 2444 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
2346 2445 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
2347 2446 1.436600 CTCGCATGCCATGTAGGATC 58.563 55.000 13.15 0.00 41.22 3.36
2348 2447 0.035881 CCTCGCATGCCATGTAGGAT 59.964 55.000 18.19 0.00 41.22 3.24
2349 2448 1.447217 CCTCGCATGCCATGTAGGA 59.553 57.895 18.19 8.22 41.22 2.94
2350 2449 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
2351 2450 1.524393 TGCCTCGCATGCCATGTAG 60.524 57.895 13.15 4.55 31.71 2.74
2352 2451 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
2366 2465 1.602311 CATAGCCTCAAGGTGATGCC 58.398 55.000 0.00 0.00 38.54 4.40
2367 2466 0.950116 GCATAGCCTCAAGGTGATGC 59.050 55.000 16.47 16.47 43.18 3.91
2368 2467 2.336945 TGCATAGCCTCAAGGTGATG 57.663 50.000 0.00 3.41 37.57 3.07
2369 2468 3.220110 CAATGCATAGCCTCAAGGTGAT 58.780 45.455 0.00 0.00 37.57 3.06
2370 2469 2.025981 ACAATGCATAGCCTCAAGGTGA 60.026 45.455 0.00 0.00 37.57 4.02
2371 2470 2.372264 ACAATGCATAGCCTCAAGGTG 58.628 47.619 0.00 0.00 37.57 4.00
2372 2471 2.814805 ACAATGCATAGCCTCAAGGT 57.185 45.000 0.00 0.00 37.57 3.50
2373 2472 3.544684 TGTACAATGCATAGCCTCAAGG 58.455 45.455 0.00 0.00 38.53 3.61
2374 2473 4.556104 GCATGTACAATGCATAGCCTCAAG 60.556 45.833 19.12 0.00 44.00 3.02
2375 2474 3.316029 GCATGTACAATGCATAGCCTCAA 59.684 43.478 19.12 0.00 44.00 3.02
2376 2475 2.880268 GCATGTACAATGCATAGCCTCA 59.120 45.455 19.12 0.00 44.00 3.86
2377 2476 2.227388 GGCATGTACAATGCATAGCCTC 59.773 50.000 22.92 7.94 46.21 4.70
2378 2477 2.233271 GGCATGTACAATGCATAGCCT 58.767 47.619 22.92 0.00 46.21 4.58
2379 2478 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
2380 2479 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
2381 2480 4.083110 GCTTAGGGCATGTACAATGCATAG 60.083 45.833 22.92 16.50 46.21 2.23
2382 2481 3.820467 GCTTAGGGCATGTACAATGCATA 59.180 43.478 22.92 15.58 46.21 3.14
2383 2482 2.624838 GCTTAGGGCATGTACAATGCAT 59.375 45.455 22.92 16.26 46.21 3.96
2384 2483 2.023673 GCTTAGGGCATGTACAATGCA 58.976 47.619 22.92 0.00 46.21 3.96
2385 2484 2.781945 GCTTAGGGCATGTACAATGC 57.218 50.000 17.01 17.01 43.85 3.56
2428 2527 7.335673 TGAAAATCATAGATACGGAAAACTGCA 59.664 33.333 0.00 0.00 0.00 4.41
2484 2583 8.703378 TGCTCAGATAAGATTCAAGAGATAGA 57.297 34.615 0.00 0.00 0.00 1.98
2650 2752 6.338146 TGCGATCTAACACAGTAATAAAGCT 58.662 36.000 0.00 0.00 0.00 3.74
2651 2753 6.475727 TCTGCGATCTAACACAGTAATAAAGC 59.524 38.462 0.00 0.00 0.00 3.51
3037 3139 5.752472 TGCAAATCACAACCACAAATAACAG 59.248 36.000 0.00 0.00 0.00 3.16
3070 3172 5.801947 GCTCAAGTTACGTCCGTATAAGAAA 59.198 40.000 0.00 0.00 0.00 2.52
3192 3294 6.114187 AGTGTGTCCTGTATTCAAGATCAA 57.886 37.500 0.00 0.00 0.00 2.57
3193 3295 5.745312 AGTGTGTCCTGTATTCAAGATCA 57.255 39.130 0.00 0.00 0.00 2.92
3262 3371 3.760537 TCAACAAAACAAGCAACCGTAC 58.239 40.909 0.00 0.00 0.00 3.67
3419 3528 4.464008 ACAACAGCATGATATGGTTAGGG 58.536 43.478 0.00 0.00 39.69 3.53
3624 3734 4.700213 GCAAACCTGGAAGTTCAAGCTATA 59.300 41.667 0.00 0.00 0.00 1.31
3748 3858 1.722851 AGAGAAGGGTGTAGGAAGGGA 59.277 52.381 0.00 0.00 0.00 4.20
3950 4060 6.303054 TGGGATACTTGTGAAACTCAATTCA 58.697 36.000 0.00 0.00 38.04 2.57
4170 4280 8.862325 TGGACTAGAAACATAATTGTGACAAT 57.138 30.769 9.40 4.72 35.83 2.71
4458 4568 3.405831 TCTCCGTTTCTGAAGAGACGTA 58.594 45.455 18.50 5.75 46.91 3.57
4507 4620 7.928706 ACTGACATAGTATGGAAAGATAACTGC 59.071 37.037 14.59 0.00 38.04 4.40
4584 4697 0.960364 TTTGTCATCCCTCTTGCGCC 60.960 55.000 4.18 0.00 0.00 6.53
4676 4789 8.764524 ACTTCATAGACAGCTTAAGTTTACAG 57.235 34.615 4.02 0.00 0.00 2.74
4704 4817 5.649395 ACATCATACTAAACACAGCATGCTT 59.351 36.000 19.98 5.66 42.53 3.91
4898 5018 6.723977 AGAAAAGTTTAGGGCCATTGATACAA 59.276 34.615 6.18 0.00 0.00 2.41
5092 5213 1.064758 AGGTGTCACAAGGTCAGCAAA 60.065 47.619 5.12 0.00 32.91 3.68
5129 5250 0.386605 CTGCGAGATCTTCCGATCCG 60.387 60.000 7.93 0.98 45.83 4.18
5286 5408 3.005554 GCAGCTTTCATCAGTCTTGCTA 58.994 45.455 0.00 0.00 0.00 3.49
5407 5529 7.730364 TTGTCAAACTAGGAATCTGAAGTTC 57.270 36.000 0.00 0.00 31.15 3.01
5428 5550 5.631026 CGAATCGTGGAATCATTTCTTTGT 58.369 37.500 0.00 0.00 32.16 2.83
5537 5659 1.531423 ACTTGACTGCCTGCAAGATG 58.469 50.000 14.11 0.00 43.11 2.90
5577 5699 3.115390 TGGGAAGATAAGAGAACAGGGG 58.885 50.000 0.00 0.00 0.00 4.79
5686 5808 9.190317 ACTAAATATCGCATATATCCTGAGTCA 57.810 33.333 0.00 0.00 0.00 3.41
5811 5933 3.222603 CCCATATTAACAGTTCAGGCCC 58.777 50.000 0.00 0.00 0.00 5.80
6019 6141 1.154430 AACAGCTTTCCACCCCCTTA 58.846 50.000 0.00 0.00 0.00 2.69
6138 6260 4.645136 AGCGAACTATTCAGGAGTACATGA 59.355 41.667 0.00 0.00 34.99 3.07
6324 6446 6.533819 CGCCAGAACGGTTATTATATTTGA 57.466 37.500 0.00 0.00 36.97 2.69
6397 6535 6.855836 TGCTGACAAATCATAGGATGAAAAC 58.144 36.000 0.00 0.00 43.50 2.43
6421 6559 2.537633 ATCCATGTCCCAGCAAACAT 57.462 45.000 0.00 0.00 36.56 2.71
6597 6739 0.238553 GAAAACGAGCCCAAGCACTC 59.761 55.000 0.00 0.00 43.56 3.51
6598 6740 0.179018 AGAAAACGAGCCCAAGCACT 60.179 50.000 0.00 0.00 43.56 4.40
6599 6741 0.668535 AAGAAAACGAGCCCAAGCAC 59.331 50.000 0.00 0.00 43.56 4.40
7077 7220 9.628500 AACTTATAACACTTTCAAGGTTTCTCT 57.372 29.630 0.00 0.00 0.00 3.10
7110 7253 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
7111 7254 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
7112 7255 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
7113 7256 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7114 7257 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7115 7258 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7116 7259 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
7117 7260 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
7118 7261 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
7119 7262 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
7120 7263 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
7121 7264 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
7122 7265 7.010160 AGAAAGTTGGGTCATCTATTTTGGAA 58.990 34.615 0.00 0.00 0.00 3.53
7123 7266 6.552008 AGAAAGTTGGGTCATCTATTTTGGA 58.448 36.000 0.00 0.00 0.00 3.53
7124 7267 6.840780 AGAAAGTTGGGTCATCTATTTTGG 57.159 37.500 0.00 0.00 0.00 3.28
7160 7303 9.696917 GTTCCAAAATAGATGACTCAATTTTGT 57.303 29.630 18.01 0.00 43.14 2.83
7161 7304 8.853345 CGTTCCAAAATAGATGACTCAATTTTG 58.147 33.333 15.00 15.00 43.77 2.44
7162 7305 8.028938 CCGTTCCAAAATAGATGACTCAATTTT 58.971 33.333 0.00 0.00 33.07 1.82
7163 7306 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
7164 7307 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
7165 7308 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
7166 7309 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
7167 7310 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
7168 7311 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
7169 7312 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
7170 7313 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7171 7314 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7172 7315 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7173 7316 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7174 7317 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7175 7318 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7176 7319 6.041296 GTCTATACTCCCTCCGTTCCAAAATA 59.959 42.308 0.00 0.00 0.00 1.40
7177 7320 4.966805 TCTATACTCCCTCCGTTCCAAAAT 59.033 41.667 0.00 0.00 0.00 1.82
7178 7321 4.161001 GTCTATACTCCCTCCGTTCCAAAA 59.839 45.833 0.00 0.00 0.00 2.44
7179 7322 3.703052 GTCTATACTCCCTCCGTTCCAAA 59.297 47.826 0.00 0.00 0.00 3.28
7180 7323 3.053095 AGTCTATACTCCCTCCGTTCCAA 60.053 47.826 0.00 0.00 0.00 3.53
7181 7324 2.512896 AGTCTATACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
7182 7325 3.226682 AGTCTATACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
7183 7326 5.011943 TCTCTAGTCTATACTCCCTCCGTTC 59.988 48.000 0.00 0.00 37.15 3.95
7184 7327 4.906664 TCTCTAGTCTATACTCCCTCCGTT 59.093 45.833 0.00 0.00 37.15 4.44
7185 7328 4.284234 GTCTCTAGTCTATACTCCCTCCGT 59.716 50.000 0.00 0.00 37.15 4.69
7186 7329 4.618927 CGTCTCTAGTCTATACTCCCTCCG 60.619 54.167 0.00 0.00 37.15 4.63
7187 7330 4.322953 CCGTCTCTAGTCTATACTCCCTCC 60.323 54.167 0.00 0.00 37.15 4.30
7188 7331 4.527816 TCCGTCTCTAGTCTATACTCCCTC 59.472 50.000 0.00 0.00 37.15 4.30
7189 7332 4.491675 TCCGTCTCTAGTCTATACTCCCT 58.508 47.826 0.00 0.00 37.15 4.20
7190 7333 4.527816 TCTCCGTCTCTAGTCTATACTCCC 59.472 50.000 0.00 0.00 37.15 4.30
7191 7334 5.726980 TCTCCGTCTCTAGTCTATACTCC 57.273 47.826 0.00 0.00 37.15 3.85
7192 7335 6.424812 GGTTTCTCCGTCTCTAGTCTATACTC 59.575 46.154 0.00 0.00 37.15 2.59
7193 7336 6.100134 AGGTTTCTCCGTCTCTAGTCTATACT 59.900 42.308 0.00 0.00 41.99 2.12
7430 7575 3.370978 GTCCATACCATGTGTGTTCTTCG 59.629 47.826 0.00 0.00 0.00 3.79
7474 7619 8.585471 ATTATTGAAACCAGAGGCCATATATG 57.415 34.615 5.01 5.68 0.00 1.78
7526 7704 2.092699 TGGACAATCAACCATATCGGCA 60.093 45.455 0.00 0.00 39.03 5.69
7612 7790 8.241367 CACATTTCAGTTAGTTATTAACCCACC 58.759 37.037 2.92 0.00 42.18 4.61
7613 7791 9.005777 TCACATTTCAGTTAGTTATTAACCCAC 57.994 33.333 2.92 1.07 42.18 4.61
7866 8200 6.037940 CAGGTGATATGTTCCAACATCAAGAG 59.962 42.308 8.22 0.00 46.10 2.85
8042 8376 7.587037 TGATTCCTGCCCAAGAATAATTAAG 57.413 36.000 0.00 0.00 32.91 1.85
8043 8377 7.969690 TTGATTCCTGCCCAAGAATAATTAA 57.030 32.000 0.00 0.00 32.91 1.40
8340 8675 2.002586 CACCACGGAATCACTAGCTTG 58.997 52.381 0.00 0.00 0.00 4.01
8346 8681 0.108585 AAGTGCACCACGGAATCACT 59.891 50.000 14.63 0.00 39.64 3.41
8437 8776 6.456988 GCGAATGGATCTTCACGATTTTACTT 60.457 38.462 0.00 0.00 30.84 2.24
8531 8908 6.488683 GGAGATGCTCTTAGTAGTACTGATGT 59.511 42.308 13.29 0.00 0.00 3.06
8532 8909 6.488344 TGGAGATGCTCTTAGTAGTACTGATG 59.512 42.308 13.29 3.28 0.00 3.07
8534 8911 6.002653 TGGAGATGCTCTTAGTAGTACTGA 57.997 41.667 13.29 3.71 0.00 3.41
8543 8920 5.931146 GGTATGTCATTGGAGATGCTCTTAG 59.069 44.000 0.00 0.00 31.41 2.18
8544 8921 5.509670 CGGTATGTCATTGGAGATGCTCTTA 60.510 44.000 0.00 0.00 31.41 2.10
8545 8922 4.712476 GGTATGTCATTGGAGATGCTCTT 58.288 43.478 0.00 0.00 31.41 2.85
8546 8923 3.244009 CGGTATGTCATTGGAGATGCTCT 60.244 47.826 0.00 0.00 31.41 4.09
8547 8924 3.062763 CGGTATGTCATTGGAGATGCTC 58.937 50.000 0.00 0.00 31.41 4.26
8548 8925 2.808202 GCGGTATGTCATTGGAGATGCT 60.808 50.000 0.00 0.00 31.41 3.79
8681 9080 5.065914 GCATTATCATCTCTACCCAAAGCA 58.934 41.667 0.00 0.00 0.00 3.91
8704 9103 4.436050 GCATGTAACCGAAGAGACACATTG 60.436 45.833 0.00 0.00 0.00 2.82
8744 9446 7.177041 TGGGTATAACTTCAGCCGTTTTATTTT 59.823 33.333 0.00 0.00 34.99 1.82
8747 9449 5.587443 GTGGGTATAACTTCAGCCGTTTTAT 59.413 40.000 0.00 0.00 34.99 1.40
8756 9458 3.446161 TCCTCGTGTGGGTATAACTTCAG 59.554 47.826 0.00 0.00 0.00 3.02
8757 9459 3.433343 TCCTCGTGTGGGTATAACTTCA 58.567 45.455 0.00 0.00 0.00 3.02
8803 9505 8.114331 TCTGTGCAAATCAAAAACAGATAGAT 57.886 30.769 0.00 0.00 41.63 1.98
8804 9506 7.445096 TCTCTGTGCAAATCAAAAACAGATAGA 59.555 33.333 4.44 0.00 44.47 1.98
8824 9526 8.055279 GCTAATAAGCTAGATGATCTCTCTGT 57.945 38.462 0.00 0.00 45.85 3.41
8859 9561 2.354729 CCTTCCAATCCGCCCACA 59.645 61.111 0.00 0.00 0.00 4.17
8878 9583 4.159321 TGGTGCATCTCAACAAACTCAAAA 59.841 37.500 0.00 0.00 39.94 2.44
8880 9585 3.286353 TGGTGCATCTCAACAAACTCAA 58.714 40.909 0.00 0.00 39.94 3.02
8881 9586 2.929641 TGGTGCATCTCAACAAACTCA 58.070 42.857 0.00 0.00 39.94 3.41
8916 9621 0.514691 GCAAGTCGTCTGCAAAGAGG 59.485 55.000 0.00 0.00 0.00 3.69
8933 9638 9.357652 GAACATTTGCTTTCATAAGAATTAGCA 57.642 29.630 3.55 3.55 42.70 3.49
8972 9677 1.277273 CATCCACAACTCTCCTCAGCA 59.723 52.381 0.00 0.00 0.00 4.41
8985 9690 7.424803 CAGAACTTTCACAATAAACATCCACA 58.575 34.615 0.00 0.00 0.00 4.17
9050 9755 2.083774 CATGCACACTTGTATTCGGGT 58.916 47.619 0.00 0.00 0.00 5.28
9105 9810 5.864418 ACTTATCCGTTAAGGCATCAGTA 57.136 39.130 7.15 0.00 41.46 2.74
9111 9816 6.646267 ACAAAGATACTTATCCGTTAAGGCA 58.354 36.000 7.15 0.00 41.46 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.