Multiple sequence alignment - TraesCS5A01G114100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G114100 chr5A 100.000 5278 0 0 1 5278 227921021 227926298 0.000000e+00 9747.0
1 TraesCS5A01G114100 chr5A 90.476 231 19 2 1661 1891 227922516 227922743 8.590000e-78 302.0
2 TraesCS5A01G114100 chr5A 90.476 231 19 2 1496 1723 227922681 227922911 8.590000e-78 302.0
3 TraesCS5A01G114100 chr5A 91.579 190 16 0 4 193 672744611 672744422 4.050000e-66 263.0
4 TraesCS5A01G114100 chr5D 93.065 3749 161 31 1581 5278 197153575 197149875 0.000000e+00 5391.0
5 TraesCS5A01G114100 chr5D 94.275 1642 81 5 213 1842 197154867 197153227 0.000000e+00 2499.0
6 TraesCS5A01G114100 chr5D 91.698 265 19 1 1496 1757 197153492 197153228 1.080000e-96 364.0
7 TraesCS5A01G114100 chr5D 96.392 194 7 0 4 197 491271319 491271126 2.370000e-83 320.0
8 TraesCS5A01G114100 chr5D 89.011 182 17 1 1496 1674 197153408 197153227 6.880000e-54 222.0
9 TraesCS5A01G114100 chr5B 92.709 3799 154 43 1581 5277 213249255 213253032 0.000000e+00 5367.0
10 TraesCS5A01G114100 chr5B 92.212 1605 87 10 258 1842 213248017 213249603 0.000000e+00 2237.0
11 TraesCS5A01G114100 chr5B 90.943 265 21 1 1496 1757 213249338 213249602 2.340000e-93 353.0
12 TraesCS5A01G114100 chr5B 92.641 231 17 0 1661 1891 213249254 213249484 3.050000e-87 333.0
13 TraesCS5A01G114100 chr5B 88.462 182 18 1 1496 1674 213249422 213249603 3.200000e-52 217.0
14 TraesCS5A01G114100 chr5B 91.837 147 12 0 1745 1891 213249254 213249400 6.930000e-49 206.0
15 TraesCS5A01G114100 chr5B 100.000 39 0 0 213 251 213247185 213247223 7.330000e-09 73.1
16 TraesCS5A01G114100 chr4A 78.919 925 176 16 2520 3436 522294095 522295008 1.260000e-170 610.0
17 TraesCS5A01G114100 chr4D 78.811 925 177 16 2520 3436 70119063 70119976 5.850000e-169 604.0
18 TraesCS5A01G114100 chr4B 78.486 925 180 16 2520 3436 103772923 103773836 5.890000e-164 588.0
19 TraesCS5A01G114100 chr7D 79.198 524 101 5 2734 3256 492221175 492220659 1.810000e-94 357.0
20 TraesCS5A01G114100 chr7A 79.278 526 97 8 2734 3256 558756224 558755708 1.810000e-94 357.0
21 TraesCS5A01G114100 chr7A 90.741 54 5 0 139 192 195348182 195348235 7.330000e-09 73.1
22 TraesCS5A01G114100 chr7B 78.327 526 102 8 2734 3256 521617128 521616612 3.940000e-86 329.0
23 TraesCS5A01G114100 chr7B 89.474 57 6 0 139 195 642745667 642745723 7.330000e-09 73.1
24 TraesCS5A01G114100 chr7B 89.474 57 6 0 139 195 663459414 663459470 7.330000e-09 73.1
25 TraesCS5A01G114100 chr6D 95.337 193 6 2 4 195 387392989 387392799 2.390000e-78 303.0
26 TraesCS5A01G114100 chr6D 78.365 208 43 2 2939 3145 335375774 335375568 3.320000e-27 134.0
27 TraesCS5A01G114100 chr6A 92.857 56 3 1 139 193 100094171 100094226 4.380000e-11 80.5
28 TraesCS5A01G114100 chr1B 88.710 62 7 0 139 200 146788306 146788367 5.670000e-10 76.8
29 TraesCS5A01G114100 chr2B 89.474 57 6 0 139 195 184777629 184777573 7.330000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G114100 chr5A 227921021 227926298 5277 False 3450.333333 9747 93.650667 1 5278 3 chr5A.!!$F1 5277
1 TraesCS5A01G114100 chr5D 197149875 197154867 4992 True 2119.000000 5391 92.012250 213 5278 4 chr5D.!!$R2 5065
2 TraesCS5A01G114100 chr5B 213247185 213253032 5847 False 1255.157143 5367 92.686286 213 5277 7 chr5B.!!$F1 5064
3 TraesCS5A01G114100 chr4A 522294095 522295008 913 False 610.000000 610 78.919000 2520 3436 1 chr4A.!!$F1 916
4 TraesCS5A01G114100 chr4D 70119063 70119976 913 False 604.000000 604 78.811000 2520 3436 1 chr4D.!!$F1 916
5 TraesCS5A01G114100 chr4B 103772923 103773836 913 False 588.000000 588 78.486000 2520 3436 1 chr4B.!!$F1 916
6 TraesCS5A01G114100 chr7D 492220659 492221175 516 True 357.000000 357 79.198000 2734 3256 1 chr7D.!!$R1 522
7 TraesCS5A01G114100 chr7A 558755708 558756224 516 True 357.000000 357 79.278000 2734 3256 1 chr7A.!!$R1 522
8 TraesCS5A01G114100 chr7B 521616612 521617128 516 True 329.000000 329 78.327000 2734 3256 1 chr7B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.033306 GTTCGACCCTACTCCTCCCT 60.033 60.000 0.00 0.0 0.00 4.20 F
50 51 0.107017 CCCCGAAATCTCCATGCAGT 60.107 55.000 0.00 0.0 0.00 4.40 F
1584 2389 0.108804 ACAATACCGAGCAGGACACG 60.109 55.000 5.19 0.0 45.00 4.49 F
1635 2440 0.039074 AGTCGACAGGAACGAAGCAG 60.039 55.000 19.50 0.0 41.31 4.24 F
1636 2441 0.039437 GTCGACAGGAACGAAGCAGA 60.039 55.000 11.55 0.0 41.31 4.26 F
1637 2442 0.241213 TCGACAGGAACGAAGCAGAG 59.759 55.000 0.00 0.0 36.84 3.35 F
1806 2611 0.311165 CGACAGACACGAACCAGAGT 59.689 55.000 0.00 0.0 0.00 3.24 F
2478 3307 0.823356 AGCACCAGAACAACGGCAAT 60.823 50.000 0.00 0.0 0.00 3.56 F
3473 4307 1.318491 GCATGCGCACGATTTTTCTTC 59.682 47.619 14.90 0.0 38.36 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 2421 0.039074 CTGCTTCGTTCCTGTCGACT 60.039 55.000 17.92 0.00 37.05 4.18 R
1617 2422 0.039437 TCTGCTTCGTTCCTGTCGAC 60.039 55.000 9.11 9.11 37.05 4.20 R
2517 3346 0.601558 ACAGCTTCCACACGTACGAT 59.398 50.000 24.41 6.62 0.00 3.73 R
2598 3427 1.602311 AGTGCTTGTTGCTCTTGAGG 58.398 50.000 0.00 0.00 42.11 3.86 R
3474 4308 1.602851 GCATGAGAGCAAGCGATTCAT 59.397 47.619 0.00 4.10 0.00 2.57 R
3506 4344 2.684001 ATGTTCCTGCCATGCAATTG 57.316 45.000 0.00 0.00 38.41 2.32 R
3721 4559 2.109799 CCCATGCCGCTCAGGTAG 59.890 66.667 0.00 0.00 43.70 3.18 R
3932 4804 0.313987 CGTAGATGATGGGCAGCGTA 59.686 55.000 0.00 0.00 38.13 4.42 R
4832 5785 0.598680 CGCAAGATTCTAGAGGGCCG 60.599 60.000 0.00 0.00 43.02 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.427020 CGTCGTTCGACCCTACTCC 59.573 63.158 17.60 0.00 42.86 3.85
19 20 1.023513 CGTCGTTCGACCCTACTCCT 61.024 60.000 17.60 0.00 42.86 3.69
20 21 0.731994 GTCGTTCGACCCTACTCCTC 59.268 60.000 13.42 0.00 0.00 3.71
21 22 0.393537 TCGTTCGACCCTACTCCTCC 60.394 60.000 0.00 0.00 0.00 4.30
22 23 1.382692 CGTTCGACCCTACTCCTCCC 61.383 65.000 0.00 0.00 0.00 4.30
23 24 0.033306 GTTCGACCCTACTCCTCCCT 60.033 60.000 0.00 0.00 0.00 4.20
24 25 0.708802 TTCGACCCTACTCCTCCCTT 59.291 55.000 0.00 0.00 0.00 3.95
25 26 0.258194 TCGACCCTACTCCTCCCTTC 59.742 60.000 0.00 0.00 0.00 3.46
26 27 1.102222 CGACCCTACTCCTCCCTTCG 61.102 65.000 0.00 0.00 0.00 3.79
27 28 1.381463 ACCCTACTCCTCCCTTCGC 60.381 63.158 0.00 0.00 0.00 4.70
28 29 1.381327 CCCTACTCCTCCCTTCGCA 60.381 63.158 0.00 0.00 0.00 5.10
29 30 1.677637 CCCTACTCCTCCCTTCGCAC 61.678 65.000 0.00 0.00 0.00 5.34
30 31 1.677637 CCTACTCCTCCCTTCGCACC 61.678 65.000 0.00 0.00 0.00 5.01
31 32 1.677637 CTACTCCTCCCTTCGCACCC 61.678 65.000 0.00 0.00 0.00 4.61
32 33 3.787001 CTCCTCCCTTCGCACCCC 61.787 72.222 0.00 0.00 0.00 4.95
47 48 4.164258 CCCCCGAAATCTCCATGC 57.836 61.111 0.00 0.00 0.00 4.06
48 49 1.227102 CCCCCGAAATCTCCATGCA 59.773 57.895 0.00 0.00 0.00 3.96
49 50 0.820891 CCCCCGAAATCTCCATGCAG 60.821 60.000 0.00 0.00 0.00 4.41
50 51 0.107017 CCCCGAAATCTCCATGCAGT 60.107 55.000 0.00 0.00 0.00 4.40
51 52 1.303309 CCCGAAATCTCCATGCAGTC 58.697 55.000 0.00 0.00 0.00 3.51
52 53 0.933097 CCGAAATCTCCATGCAGTCG 59.067 55.000 0.00 0.00 0.00 4.18
53 54 1.645034 CGAAATCTCCATGCAGTCGT 58.355 50.000 0.00 0.00 0.00 4.34
54 55 2.481276 CCGAAATCTCCATGCAGTCGTA 60.481 50.000 0.00 0.00 0.00 3.43
55 56 2.791560 CGAAATCTCCATGCAGTCGTAG 59.208 50.000 0.00 0.00 0.00 3.51
56 57 2.898729 AATCTCCATGCAGTCGTAGG 57.101 50.000 0.00 0.00 0.00 3.18
57 58 2.073252 ATCTCCATGCAGTCGTAGGA 57.927 50.000 0.00 0.00 0.00 2.94
58 59 2.073252 TCTCCATGCAGTCGTAGGAT 57.927 50.000 0.00 0.00 0.00 3.24
59 60 1.957177 TCTCCATGCAGTCGTAGGATC 59.043 52.381 0.00 0.00 0.00 3.36
60 61 1.683385 CTCCATGCAGTCGTAGGATCA 59.317 52.381 0.00 0.00 0.00 2.92
61 62 1.683385 TCCATGCAGTCGTAGGATCAG 59.317 52.381 0.00 0.00 0.00 2.90
62 63 1.495878 CATGCAGTCGTAGGATCAGC 58.504 55.000 0.00 0.00 0.00 4.26
63 64 1.068281 CATGCAGTCGTAGGATCAGCT 59.932 52.381 0.00 0.00 0.00 4.24
64 65 1.186200 TGCAGTCGTAGGATCAGCTT 58.814 50.000 0.00 0.00 0.00 3.74
65 66 1.135139 TGCAGTCGTAGGATCAGCTTC 59.865 52.381 0.00 0.00 0.00 3.86
66 67 1.862008 GCAGTCGTAGGATCAGCTTCG 60.862 57.143 0.00 0.00 0.00 3.79
67 68 1.402259 CAGTCGTAGGATCAGCTTCGT 59.598 52.381 0.00 0.00 0.00 3.85
68 69 2.093106 AGTCGTAGGATCAGCTTCGTT 58.907 47.619 0.00 0.00 0.00 3.85
69 70 2.159366 AGTCGTAGGATCAGCTTCGTTG 60.159 50.000 0.00 0.00 0.00 4.10
70 71 0.924090 CGTAGGATCAGCTTCGTTGC 59.076 55.000 0.00 0.00 0.00 4.17
71 72 1.469940 CGTAGGATCAGCTTCGTTGCT 60.470 52.381 0.00 0.00 45.18 3.91
72 73 2.197577 GTAGGATCAGCTTCGTTGCTC 58.802 52.381 0.00 0.00 41.98 4.26
73 74 0.459237 AGGATCAGCTTCGTTGCTCG 60.459 55.000 0.00 0.00 41.98 5.03
74 75 1.346538 GATCAGCTTCGTTGCTCGC 59.653 57.895 2.25 0.00 41.98 5.03
75 76 2.029904 GATCAGCTTCGTTGCTCGCC 62.030 60.000 2.25 0.00 41.98 5.54
76 77 2.513026 ATCAGCTTCGTTGCTCGCCT 62.513 55.000 2.25 0.00 41.98 5.52
77 78 2.433318 AGCTTCGTTGCTCGCCTC 60.433 61.111 0.00 0.00 39.34 4.70
78 79 3.491652 GCTTCGTTGCTCGCCTCC 61.492 66.667 0.00 0.00 39.67 4.30
79 80 2.262915 CTTCGTTGCTCGCCTCCT 59.737 61.111 0.00 0.00 39.67 3.69
80 81 2.048222 TTCGTTGCTCGCCTCCTG 60.048 61.111 0.00 0.00 39.67 3.86
81 82 3.589654 TTCGTTGCTCGCCTCCTGG 62.590 63.158 0.00 0.00 39.67 4.45
83 84 3.706373 GTTGCTCGCCTCCTGGGA 61.706 66.667 0.00 0.00 37.23 4.37
84 85 3.706373 TTGCTCGCCTCCTGGGAC 61.706 66.667 0.00 0.00 37.23 4.46
87 88 3.827898 CTCGCCTCCTGGGACGTC 61.828 72.222 7.13 7.13 37.23 4.34
90 91 3.148279 GCCTCCTGGGACGTCGAT 61.148 66.667 9.92 0.00 37.23 3.59
91 92 3.121019 CCTCCTGGGACGTCGATC 58.879 66.667 9.92 2.36 37.23 3.69
92 93 2.716244 CTCCTGGGACGTCGATCG 59.284 66.667 9.36 9.36 46.00 3.69
93 94 3.471244 CTCCTGGGACGTCGATCGC 62.471 68.421 11.09 4.79 44.19 4.58
94 95 3.822192 CCTGGGACGTCGATCGCA 61.822 66.667 11.09 6.81 44.19 5.10
95 96 2.579787 CTGGGACGTCGATCGCAC 60.580 66.667 11.09 8.82 44.19 5.34
96 97 3.336715 CTGGGACGTCGATCGCACA 62.337 63.158 11.09 2.41 44.19 4.57
97 98 2.879462 GGGACGTCGATCGCACAC 60.879 66.667 11.09 2.46 44.19 3.82
98 99 3.238241 GGACGTCGATCGCACACG 61.238 66.667 21.69 21.69 44.19 4.49
99 100 3.887327 GACGTCGATCGCACACGC 61.887 66.667 22.80 14.15 44.19 5.34
109 110 3.342627 GCACACGCGTGGTAGCAA 61.343 61.111 39.21 0.00 43.81 3.91
110 111 2.677003 GCACACGCGTGGTAGCAAT 61.677 57.895 39.21 17.03 43.81 3.56
111 112 1.419922 CACACGCGTGGTAGCAATC 59.580 57.895 39.21 0.00 39.64 2.67
112 113 2.092291 ACACGCGTGGTAGCAATCG 61.092 57.895 39.21 13.98 36.85 3.34
113 114 3.186047 ACGCGTGGTAGCAATCGC 61.186 61.111 12.93 17.08 44.23 4.58
114 115 3.925238 CGCGTGGTAGCAATCGCC 61.925 66.667 19.97 6.76 44.73 5.54
115 116 3.925238 GCGTGGTAGCAATCGCCG 61.925 66.667 16.43 7.88 42.33 6.46
116 117 3.261951 CGTGGTAGCAATCGCCGG 61.262 66.667 0.00 0.00 39.83 6.13
117 118 2.125269 GTGGTAGCAATCGCCGGT 60.125 61.111 1.90 0.00 39.83 5.28
118 119 2.125310 TGGTAGCAATCGCCGGTG 60.125 61.111 9.28 9.28 39.83 4.94
119 120 2.895372 GGTAGCAATCGCCGGTGG 60.895 66.667 16.49 1.03 39.83 4.61
120 121 2.125269 GTAGCAATCGCCGGTGGT 60.125 61.111 16.49 4.51 39.83 4.16
121 122 2.171725 GTAGCAATCGCCGGTGGTC 61.172 63.158 16.49 0.00 39.83 4.02
122 123 2.355986 TAGCAATCGCCGGTGGTCT 61.356 57.895 16.49 4.81 39.83 3.85
123 124 2.572095 TAGCAATCGCCGGTGGTCTG 62.572 60.000 16.49 10.34 39.83 3.51
124 125 2.264480 CAATCGCCGGTGGTCTGA 59.736 61.111 16.49 0.00 0.00 3.27
125 126 2.100631 CAATCGCCGGTGGTCTGAC 61.101 63.158 16.49 0.00 0.00 3.51
126 127 3.642778 AATCGCCGGTGGTCTGACG 62.643 63.158 16.49 0.67 0.00 4.35
128 129 3.740397 CGCCGGTGGTCTGACGTA 61.740 66.667 7.26 0.00 0.00 3.57
129 130 2.181021 GCCGGTGGTCTGACGTAG 59.819 66.667 1.90 0.00 0.00 3.51
130 131 2.338015 GCCGGTGGTCTGACGTAGA 61.338 63.158 1.90 0.00 0.00 2.59
131 132 1.870055 GCCGGTGGTCTGACGTAGAA 61.870 60.000 1.90 0.00 37.12 2.10
132 133 0.599558 CCGGTGGTCTGACGTAGAAA 59.400 55.000 1.07 0.00 37.12 2.52
133 134 1.668047 CCGGTGGTCTGACGTAGAAAC 60.668 57.143 1.07 0.00 37.12 2.78
134 135 1.668047 CGGTGGTCTGACGTAGAAACC 60.668 57.143 1.07 3.52 39.44 3.27
135 136 1.337541 GGTGGTCTGACGTAGAAACCC 60.338 57.143 1.07 0.00 37.99 4.11
136 137 1.617357 GTGGTCTGACGTAGAAACCCT 59.383 52.381 1.07 0.00 37.12 4.34
137 138 2.821969 GTGGTCTGACGTAGAAACCCTA 59.178 50.000 1.07 0.00 37.12 3.53
138 139 3.087031 TGGTCTGACGTAGAAACCCTAG 58.913 50.000 1.07 0.00 37.12 3.02
139 140 3.245016 TGGTCTGACGTAGAAACCCTAGA 60.245 47.826 1.07 0.00 37.12 2.43
140 141 3.128415 GGTCTGACGTAGAAACCCTAGAC 59.872 52.174 1.07 0.00 37.12 2.59
141 142 4.009002 GTCTGACGTAGAAACCCTAGACT 58.991 47.826 0.00 0.00 37.12 3.24
142 143 4.458642 GTCTGACGTAGAAACCCTAGACTT 59.541 45.833 0.00 0.00 37.12 3.01
143 144 4.699257 TCTGACGTAGAAACCCTAGACTTC 59.301 45.833 0.00 0.00 30.84 3.01
144 145 4.401022 TGACGTAGAAACCCTAGACTTCA 58.599 43.478 0.00 0.00 0.00 3.02
145 146 4.458295 TGACGTAGAAACCCTAGACTTCAG 59.542 45.833 0.00 0.00 0.00 3.02
146 147 3.193056 ACGTAGAAACCCTAGACTTCAGC 59.807 47.826 0.00 0.00 0.00 4.26
147 148 3.731264 CGTAGAAACCCTAGACTTCAGCG 60.731 52.174 0.00 0.00 0.00 5.18
148 149 2.249139 AGAAACCCTAGACTTCAGCGT 58.751 47.619 0.00 0.00 0.00 5.07
149 150 2.231721 AGAAACCCTAGACTTCAGCGTC 59.768 50.000 0.00 0.00 0.00 5.19
150 151 0.526662 AACCCTAGACTTCAGCGTCG 59.473 55.000 0.00 0.00 38.90 5.12
151 152 1.226717 CCCTAGACTTCAGCGTCGC 60.227 63.158 9.80 9.80 38.90 5.19
152 153 1.226717 CCTAGACTTCAGCGTCGCC 60.227 63.158 14.86 0.00 38.90 5.54
153 154 1.583967 CTAGACTTCAGCGTCGCCG 60.584 63.158 14.86 3.21 38.90 6.46
183 184 1.832366 GAGGTGGACTCTAGGAAACCC 59.168 57.143 0.00 0.00 43.14 4.11
184 185 1.437547 AGGTGGACTCTAGGAAACCCT 59.562 52.381 0.00 0.00 37.84 4.34
185 186 2.658489 AGGTGGACTCTAGGAAACCCTA 59.342 50.000 0.00 0.00 35.26 3.53
210 211 2.405892 AAAAACTCACGCATGCTCAC 57.594 45.000 17.13 0.00 0.00 3.51
211 212 0.593128 AAAACTCACGCATGCTCACC 59.407 50.000 17.13 0.00 0.00 4.02
268 1056 4.542662 TCGTACTGCCGTAGAAGTTATC 57.457 45.455 0.00 0.00 0.00 1.75
272 1060 3.015327 ACTGCCGTAGAAGTTATCGAGT 58.985 45.455 0.00 0.00 0.00 4.18
300 1088 8.539770 TTTCAGTTAGCTTGCTATATATGCTC 57.460 34.615 2.99 0.00 35.47 4.26
320 1108 1.287739 CTGGGTACATTGGGGGTTCAT 59.712 52.381 0.00 0.00 0.00 2.57
363 1151 3.578716 AGCTTGTTTAGGCTCTGACACTA 59.421 43.478 0.00 0.00 32.98 2.74
385 1173 1.153349 CAAGGCTAGGTCGGGCTTC 60.153 63.158 0.00 0.00 45.56 3.86
392 1180 2.776370 TAGGTCGGGCTTCGTCCAGT 62.776 60.000 15.13 2.77 46.81 4.00
434 1222 4.358851 CGATGTTTTTGCAACAAGAGGAA 58.641 39.130 0.00 0.00 33.42 3.36
444 1232 3.857010 GCAACAAGAGGAAAATTCACCCG 60.857 47.826 0.00 0.00 0.00 5.28
631 1423 0.968405 GCCCCATTGCTTCTTGTTGA 59.032 50.000 0.00 0.00 0.00 3.18
672 1464 6.183360 CCGGTAGATCCATTTCAAAGACTTTC 60.183 42.308 0.00 0.00 35.57 2.62
693 1485 6.801539 TTCATTTCATAATCCATCGCTACC 57.198 37.500 0.00 0.00 0.00 3.18
736 1528 3.514417 TCGAGGTCGATCTGCAGG 58.486 61.111 15.13 0.00 44.22 4.85
769 1570 4.207224 GCACGTATATATATCTTGCTGCCG 59.793 45.833 12.62 4.76 0.00 5.69
772 1573 2.293677 TATATATCTTGCTGCCGGCG 57.706 50.000 23.90 17.75 45.43 6.46
887 1689 1.683790 CGTCGCCGTTCCAAGACATC 61.684 60.000 0.00 0.00 33.56 3.06
927 1729 1.129809 GTCCGATCGTGCACGTTTG 59.870 57.895 35.74 29.63 40.80 2.93
929 1731 0.389296 TCCGATCGTGCACGTTTGAT 60.389 50.000 35.74 23.35 40.80 2.57
981 1783 1.485838 CGCATGAGCTAGCTGGAACG 61.486 60.000 24.99 16.50 39.10 3.95
982 1784 0.179100 GCATGAGCTAGCTGGAACGA 60.179 55.000 24.99 0.00 37.91 3.85
989 1791 1.405821 GCTAGCTGGAACGAGAGCTAA 59.594 52.381 7.70 0.00 45.05 3.09
999 1801 4.562963 GGAACGAGAGCTAAGAAAGGGAAA 60.563 45.833 0.00 0.00 0.00 3.13
1041 1843 3.438017 CTACCAGAGGCTGCCGCTC 62.438 68.421 22.56 10.96 29.38 5.03
1232 2034 3.414700 CAGCGTCGTCAAGGGTGC 61.415 66.667 0.00 0.00 34.84 5.01
1252 2054 1.080772 GACGCCGACATGACACAGA 60.081 57.895 0.00 0.00 0.00 3.41
1266 2068 1.210478 ACACAGACAACAGACAAGGCT 59.790 47.619 0.00 0.00 0.00 4.58
1278 2080 1.378250 CAAGGCTGCCAAGGAGGAG 60.378 63.158 22.65 0.00 41.22 3.69
1279 2081 2.610519 AAGGCTGCCAAGGAGGAGG 61.611 63.158 22.65 0.00 41.22 4.30
1417 2222 1.228657 GCCGTCCAAGAACCTCACAC 61.229 60.000 0.00 0.00 0.00 3.82
1535 2340 4.473520 CAAGGGCGCCGAGGATGT 62.474 66.667 22.54 0.00 0.00 3.06
1569 2374 3.434319 CAGAGCGGCGGCAACAAT 61.434 61.111 19.21 0.00 43.41 2.71
1570 2375 2.106074 CAGAGCGGCGGCAACAATA 61.106 57.895 19.21 0.00 43.41 1.90
1571 2376 2.106683 AGAGCGGCGGCAACAATAC 61.107 57.895 19.21 1.16 43.41 1.89
1572 2377 3.108357 GAGCGGCGGCAACAATACC 62.108 63.158 19.21 0.00 43.41 2.73
1580 2385 0.392461 GGCAACAATACCGAGCAGGA 60.392 55.000 5.19 0.00 45.00 3.86
1581 2386 0.727398 GCAACAATACCGAGCAGGAC 59.273 55.000 5.19 0.00 45.00 3.85
1582 2387 1.943968 GCAACAATACCGAGCAGGACA 60.944 52.381 5.19 0.00 45.00 4.02
1583 2388 1.732259 CAACAATACCGAGCAGGACAC 59.268 52.381 5.19 0.00 45.00 3.67
1584 2389 0.108804 ACAATACCGAGCAGGACACG 60.109 55.000 5.19 0.00 45.00 4.49
1589 2394 3.062466 CGAGCAGGACACGGAGGA 61.062 66.667 0.00 0.00 0.00 3.71
1590 2395 2.636412 CGAGCAGGACACGGAGGAA 61.636 63.158 0.00 0.00 0.00 3.36
1591 2396 1.216710 GAGCAGGACACGGAGGAAG 59.783 63.158 0.00 0.00 0.00 3.46
1592 2397 2.435059 GCAGGACACGGAGGAAGC 60.435 66.667 0.00 0.00 0.00 3.86
1593 2398 2.125912 CAGGACACGGAGGAAGCG 60.126 66.667 0.00 0.00 0.00 4.68
1594 2399 2.282958 AGGACACGGAGGAAGCGA 60.283 61.111 0.00 0.00 0.00 4.93
1595 2400 2.126031 GGACACGGAGGAAGCGAC 60.126 66.667 0.00 0.00 0.00 5.19
1596 2401 2.504244 GACACGGAGGAAGCGACG 60.504 66.667 0.00 0.00 0.00 5.12
1597 2402 2.974489 GACACGGAGGAAGCGACGA 61.974 63.158 0.00 0.00 0.00 4.20
1598 2403 2.504244 CACGGAGGAAGCGACGAC 60.504 66.667 0.00 0.00 0.00 4.34
1599 2404 3.745803 ACGGAGGAAGCGACGACC 61.746 66.667 0.00 0.00 0.00 4.79
1600 2405 4.831307 CGGAGGAAGCGACGACCG 62.831 72.222 0.00 0.00 42.21 4.79
1601 2406 3.437795 GGAGGAAGCGACGACCGA 61.438 66.667 0.00 0.00 41.76 4.69
1602 2407 2.202453 GAGGAAGCGACGACCGAC 60.202 66.667 0.00 0.00 41.76 4.79
1603 2408 2.974489 GAGGAAGCGACGACCGACA 61.974 63.158 0.00 0.00 41.76 4.35
1604 2409 2.049802 GGAAGCGACGACCGACAA 60.050 61.111 0.00 0.00 41.76 3.18
1605 2410 2.087009 GGAAGCGACGACCGACAAG 61.087 63.158 0.00 0.00 41.76 3.16
1607 2412 3.569049 AAGCGACGACCGACAAGGG 62.569 63.158 0.00 0.00 46.96 3.95
1617 2422 4.821589 GACAAGGGCGCCGAGGAG 62.822 72.222 22.54 10.87 0.00 3.69
1619 2424 4.821589 CAAGGGCGCCGAGGAGTC 62.822 72.222 22.54 4.09 0.00 3.36
1630 2435 2.552802 GAGGAGTCGACAGGAACGA 58.447 57.895 19.50 0.00 37.43 3.85
1631 2436 0.879765 GAGGAGTCGACAGGAACGAA 59.120 55.000 19.50 0.00 41.31 3.85
1632 2437 0.882474 AGGAGTCGACAGGAACGAAG 59.118 55.000 19.50 0.00 41.31 3.79
1633 2438 0.733223 GGAGTCGACAGGAACGAAGC 60.733 60.000 19.50 0.00 41.31 3.86
1634 2439 0.039437 GAGTCGACAGGAACGAAGCA 60.039 55.000 19.50 0.00 41.31 3.91
1635 2440 0.039074 AGTCGACAGGAACGAAGCAG 60.039 55.000 19.50 0.00 41.31 4.24
1636 2441 0.039437 GTCGACAGGAACGAAGCAGA 60.039 55.000 11.55 0.00 41.31 4.26
1637 2442 0.241213 TCGACAGGAACGAAGCAGAG 59.759 55.000 0.00 0.00 36.84 3.35
1638 2443 1.347817 CGACAGGAACGAAGCAGAGC 61.348 60.000 0.00 0.00 0.00 4.09
1639 2444 1.347817 GACAGGAACGAAGCAGAGCG 61.348 60.000 0.00 0.00 0.00 5.03
1640 2445 2.097038 CAGGAACGAAGCAGAGCGG 61.097 63.158 0.00 0.00 0.00 5.52
1641 2446 3.491652 GGAACGAAGCAGAGCGGC 61.492 66.667 0.00 0.00 0.00 6.53
1642 2447 2.738521 GAACGAAGCAGAGCGGCA 60.739 61.111 1.45 0.00 35.83 5.69
1643 2448 2.734673 GAACGAAGCAGAGCGGCAG 61.735 63.158 1.45 0.00 35.83 4.85
1656 2461 2.355009 GGCAGCAACAACGCCAAG 60.355 61.111 0.00 0.00 45.52 3.61
1743 2548 4.389576 GGCAACAACGCCGAGCAG 62.390 66.667 0.00 0.00 43.52 4.24
1757 2562 2.232298 GAGCAGAACACGGAGGAGGG 62.232 65.000 0.00 0.00 0.00 4.30
1758 2563 2.982130 CAGAACACGGAGGAGGGG 59.018 66.667 0.00 0.00 0.00 4.79
1793 2598 2.761195 CCGAGGATGCGTCGACAGA 61.761 63.158 17.16 0.54 43.12 3.41
1806 2611 0.311165 CGACAGACACGAACCAGAGT 59.689 55.000 0.00 0.00 0.00 3.24
1907 2736 2.429930 CACGGAGGAGGCACCAAA 59.570 61.111 3.18 0.00 42.04 3.28
1933 2762 4.373116 CGGACACCGGTGACCAGG 62.373 72.222 41.30 28.58 43.85 4.45
1949 2778 2.017049 CCAGGTTGATAAAAGCTCCGG 58.983 52.381 0.00 0.00 0.00 5.14
1956 2785 2.235155 TGATAAAAGCTCCGGCACTACA 59.765 45.455 0.00 0.00 41.70 2.74
2012 2841 1.807573 CGCTGACCGAGAAGAAGGC 60.808 63.158 0.00 0.00 40.02 4.35
2022 2851 2.159393 CGAGAAGAAGGCTGAGACAGAG 60.159 54.545 2.81 0.00 32.44 3.35
2064 2893 2.104530 GAAGAGACGCCGGCCTAC 59.895 66.667 23.46 12.55 0.00 3.18
2088 2917 4.719369 GAAGCTGGCGACGACGGT 62.719 66.667 11.99 1.08 40.15 4.83
2090 2919 2.609183 GAAGCTGGCGACGACGGTAT 62.609 60.000 11.99 0.00 40.15 2.73
2106 2935 2.479730 CGGTATGGAGAAGAACCAGACG 60.480 54.545 0.00 0.00 46.53 4.18
2181 3010 2.595881 CCAAACGTTCGTCGACAAGAAC 60.596 50.000 20.13 20.13 42.86 3.01
2241 3070 2.554462 CACACTCTCTGAAGAAGACGGA 59.446 50.000 0.00 0.00 0.00 4.69
2283 3112 1.966451 CACCACCCAAGGCGAAGAC 60.966 63.158 0.00 0.00 0.00 3.01
2451 3280 2.174349 GCGCGAAACAGCAGGAAG 59.826 61.111 12.10 0.00 36.85 3.46
2452 3281 2.317609 GCGCGAAACAGCAGGAAGA 61.318 57.895 12.10 0.00 36.85 2.87
2453 3282 1.841663 GCGCGAAACAGCAGGAAGAA 61.842 55.000 12.10 0.00 36.85 2.52
2464 3293 1.948144 GCAGGAAGAAGAAGGAGCACC 60.948 57.143 0.00 0.00 0.00 5.01
2472 3301 2.262423 AGAAGGAGCACCAGAACAAC 57.738 50.000 2.07 0.00 38.94 3.32
2478 3307 0.823356 AGCACCAGAACAACGGCAAT 60.823 50.000 0.00 0.00 0.00 3.56
2517 3346 4.710167 TCGTCGACGGAGGAGGCA 62.710 66.667 35.05 12.79 40.29 4.75
2795 3624 2.052047 AACTGGGTGAAGGTGTCCGG 62.052 60.000 0.00 0.00 0.00 5.14
3276 4108 2.674033 GCCATGGCTGCACTGACA 60.674 61.111 29.98 0.00 38.26 3.58
3467 4301 4.834892 GCCGCATGCGCACGATTT 62.835 61.111 34.00 0.00 38.40 2.17
3468 4302 2.202466 CCGCATGCGCACGATTTT 60.202 55.556 34.00 0.00 38.40 1.82
3473 4307 1.318491 GCATGCGCACGATTTTTCTTC 59.682 47.619 14.90 0.00 38.36 2.87
3474 4308 2.583739 CATGCGCACGATTTTTCTTCA 58.416 42.857 14.90 0.00 0.00 3.02
3721 4559 2.435059 GAGGCGGTCAACAGCTCC 60.435 66.667 5.30 0.00 37.23 4.70
3812 4670 2.724454 GGTAAGCCCTTTCCTTTCCTC 58.276 52.381 0.00 0.00 29.98 3.71
3815 4673 1.747444 AGCCCTTTCCTTTCCTCTCA 58.253 50.000 0.00 0.00 0.00 3.27
4181 5053 0.659957 GGATCGCCAAATCTCTGCAC 59.340 55.000 0.00 0.00 0.00 4.57
4273 5145 1.342672 ACCCAAGTCCAACCACTCGT 61.343 55.000 0.00 0.00 0.00 4.18
4284 5156 1.254954 ACCACTCGTCTAGGAACACC 58.745 55.000 0.00 0.00 0.00 4.16
4287 5159 1.067776 CACTCGTCTAGGAACACCACC 60.068 57.143 0.00 0.00 0.00 4.61
4290 5162 0.966920 CGTCTAGGAACACCACCACT 59.033 55.000 0.00 0.00 0.00 4.00
4310 5212 5.238432 CCACTAGTACTTTGCAAACACATGA 59.762 40.000 8.05 0.00 0.00 3.07
4311 5213 6.365839 CACTAGTACTTTGCAAACACATGAG 58.634 40.000 8.05 9.97 0.00 2.90
4312 5214 6.017934 CACTAGTACTTTGCAAACACATGAGT 60.018 38.462 8.05 5.33 0.00 3.41
4313 5215 7.170828 CACTAGTACTTTGCAAACACATGAGTA 59.829 37.037 8.05 4.27 0.00 2.59
4314 5216 7.878127 ACTAGTACTTTGCAAACACATGAGTAT 59.122 33.333 8.05 1.26 0.00 2.12
4315 5217 7.133891 AGTACTTTGCAAACACATGAGTATC 57.866 36.000 8.05 3.01 0.00 2.24
4373 5275 7.653311 AGGATTCTTATTGTTCACAAGTTTTGC 59.347 33.333 0.00 0.00 39.47 3.68
4443 5345 4.928661 ACTCAACACTCGATTTGTATGC 57.071 40.909 0.53 0.00 0.00 3.14
4444 5346 3.684788 ACTCAACACTCGATTTGTATGCC 59.315 43.478 0.53 0.00 0.00 4.40
4447 5351 4.517075 TCAACACTCGATTTGTATGCCAAA 59.483 37.500 0.53 0.00 46.59 3.28
4450 5354 5.640732 ACACTCGATTTGTATGCCAAAATC 58.359 37.500 0.00 0.00 45.72 2.17
4465 5369 4.990257 CCAAAATCTCACTAATGGCACTG 58.010 43.478 0.00 0.00 0.00 3.66
4466 5370 4.701651 CCAAAATCTCACTAATGGCACTGA 59.298 41.667 0.00 0.00 0.00 3.41
4470 5374 5.886960 ATCTCACTAATGGCACTGAAAAC 57.113 39.130 0.00 0.00 0.00 2.43
4474 5378 6.595326 TCTCACTAATGGCACTGAAAACTATG 59.405 38.462 0.00 0.00 0.00 2.23
4499 5403 2.840651 TCCCAAGAACATCTCCTTCCTC 59.159 50.000 0.00 0.00 0.00 3.71
4565 5482 3.171277 GGCTAAAGCACTTGCAATAACG 58.829 45.455 0.00 0.00 45.16 3.18
4573 5490 1.094785 CTTGCAATAACGGGGACTGG 58.905 55.000 0.00 0.00 40.47 4.00
4590 5513 2.224161 ACTGGCTGACTGACTCTTTGTC 60.224 50.000 0.00 0.00 45.54 3.18
4604 5527 7.392418 TGACTCTTTGTCTCTCAATCATCAAT 58.608 34.615 0.00 0.00 45.54 2.57
4620 5543 8.562052 CAATCATCAATGCATTAAGCTAGTACA 58.438 33.333 12.53 0.00 45.94 2.90
4622 5545 9.948964 ATCATCAATGCATTAAGCTAGTACATA 57.051 29.630 12.53 0.00 45.94 2.29
4623 5546 9.777297 TCATCAATGCATTAAGCTAGTACATAA 57.223 29.630 12.53 0.00 45.94 1.90
4627 5550 9.831737 CAATGCATTAAGCTAGTACATAAATCC 57.168 33.333 12.53 0.00 45.94 3.01
4628 5551 9.573166 AATGCATTAAGCTAGTACATAAATCCA 57.427 29.630 11.02 0.00 45.94 3.41
4629 5552 9.745018 ATGCATTAAGCTAGTACATAAATCCAT 57.255 29.630 0.00 0.00 45.94 3.41
4630 5553 9.573166 TGCATTAAGCTAGTACATAAATCCATT 57.427 29.630 0.00 0.00 45.94 3.16
4634 5557 9.555727 TTAAGCTAGTACATAAATCCATTCCAC 57.444 33.333 0.00 0.00 0.00 4.02
4635 5558 7.136822 AGCTAGTACATAAATCCATTCCACA 57.863 36.000 0.00 0.00 0.00 4.17
4636 5559 7.220030 AGCTAGTACATAAATCCATTCCACAG 58.780 38.462 0.00 0.00 0.00 3.66
4637 5560 6.428159 GCTAGTACATAAATCCATTCCACAGG 59.572 42.308 0.00 0.00 0.00 4.00
4724 5663 1.153667 GAGCCTTCCAGACTCTGCG 60.154 63.158 0.00 0.00 0.00 5.18
4732 5671 3.678056 TCCAGACTCTGCGTAACATTT 57.322 42.857 0.00 0.00 0.00 2.32
4771 5712 5.772521 ACATCATAAAACACTCAAAGGCAC 58.227 37.500 0.00 0.00 0.00 5.01
4782 5723 3.009723 CTCAAAGGCACGGTATCAATGT 58.990 45.455 0.00 0.00 0.00 2.71
4851 5804 0.598680 CGGCCCTCTAGAATCTTGCG 60.599 60.000 0.00 0.00 0.00 4.85
4974 5927 2.047844 GCGCTGCTCTCCAAGTCA 60.048 61.111 0.00 0.00 0.00 3.41
5016 5969 5.314923 TCTTAAAACAGAATGATGCTGCC 57.685 39.130 0.00 0.00 39.69 4.85
5091 6044 5.652452 GCCAAGTCCAAAACTCTAACCATAT 59.348 40.000 0.00 0.00 37.17 1.78
5126 6079 5.005094 TCACTTCATGCTCATCAAACATCA 58.995 37.500 0.00 0.00 0.00 3.07
5150 6103 6.721571 ACATTTATACAAGGTGACAACGAG 57.278 37.500 0.00 0.00 0.00 4.18
5177 6130 1.134848 CAGCTACTTCCCAGCTCACTC 60.135 57.143 0.00 0.00 46.37 3.51
5195 6148 6.360370 TCACTCACTTCTAAACTAAGCCAT 57.640 37.500 0.00 0.00 0.00 4.40
5222 6175 5.444663 AAAAGAGATTCTGAAAGTGCCAC 57.555 39.130 0.00 0.00 33.76 5.01
5228 6181 0.836606 TCTGAAAGTGCCACAGGTGA 59.163 50.000 0.00 0.00 33.76 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.023513 AGGAGTAGGGTCGAACGACG 61.024 60.000 18.57 0.00 45.41 5.12
1 2 0.731994 GAGGAGTAGGGTCGAACGAC 59.268 60.000 17.33 17.33 43.87 4.34
2 3 0.393537 GGAGGAGTAGGGTCGAACGA 60.394 60.000 0.00 0.00 0.00 3.85
3 4 1.382692 GGGAGGAGTAGGGTCGAACG 61.383 65.000 0.00 0.00 0.00 3.95
4 5 0.033306 AGGGAGGAGTAGGGTCGAAC 60.033 60.000 0.00 0.00 0.00 3.95
5 6 0.708802 AAGGGAGGAGTAGGGTCGAA 59.291 55.000 0.00 0.00 0.00 3.71
6 7 0.258194 GAAGGGAGGAGTAGGGTCGA 59.742 60.000 0.00 0.00 0.00 4.20
7 8 1.102222 CGAAGGGAGGAGTAGGGTCG 61.102 65.000 0.00 0.00 0.00 4.79
8 9 1.393487 GCGAAGGGAGGAGTAGGGTC 61.393 65.000 0.00 0.00 0.00 4.46
9 10 1.381463 GCGAAGGGAGGAGTAGGGT 60.381 63.158 0.00 0.00 0.00 4.34
10 11 1.381327 TGCGAAGGGAGGAGTAGGG 60.381 63.158 0.00 0.00 0.00 3.53
11 12 1.677637 GGTGCGAAGGGAGGAGTAGG 61.678 65.000 0.00 0.00 0.00 3.18
12 13 1.677637 GGGTGCGAAGGGAGGAGTAG 61.678 65.000 0.00 0.00 0.00 2.57
13 14 1.684734 GGGTGCGAAGGGAGGAGTA 60.685 63.158 0.00 0.00 0.00 2.59
14 15 3.003763 GGGTGCGAAGGGAGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
15 16 3.787001 GGGGTGCGAAGGGAGGAG 61.787 72.222 0.00 0.00 0.00 3.69
30 31 0.820891 CTGCATGGAGATTTCGGGGG 60.821 60.000 8.85 0.00 0.00 5.40
31 32 0.107017 ACTGCATGGAGATTTCGGGG 60.107 55.000 22.24 0.00 0.00 5.73
32 33 1.303309 GACTGCATGGAGATTTCGGG 58.697 55.000 22.24 0.00 0.00 5.14
33 34 0.933097 CGACTGCATGGAGATTTCGG 59.067 55.000 22.24 1.65 0.00 4.30
34 35 1.645034 ACGACTGCATGGAGATTTCG 58.355 50.000 22.24 20.61 0.00 3.46
35 36 3.126831 CCTACGACTGCATGGAGATTTC 58.873 50.000 22.24 7.24 0.00 2.17
36 37 2.766263 TCCTACGACTGCATGGAGATTT 59.234 45.455 22.24 6.36 0.00 2.17
37 38 2.388735 TCCTACGACTGCATGGAGATT 58.611 47.619 22.24 6.72 0.00 2.40
38 39 2.073252 TCCTACGACTGCATGGAGAT 57.927 50.000 22.24 8.31 0.00 2.75
39 40 1.957177 GATCCTACGACTGCATGGAGA 59.043 52.381 22.24 0.00 0.00 3.71
40 41 1.683385 TGATCCTACGACTGCATGGAG 59.317 52.381 13.34 13.34 0.00 3.86
41 42 1.683385 CTGATCCTACGACTGCATGGA 59.317 52.381 0.00 0.00 0.00 3.41
42 43 1.871408 GCTGATCCTACGACTGCATGG 60.871 57.143 0.00 0.00 0.00 3.66
43 44 1.068281 AGCTGATCCTACGACTGCATG 59.932 52.381 0.00 0.00 0.00 4.06
44 45 1.407936 AGCTGATCCTACGACTGCAT 58.592 50.000 0.00 0.00 0.00 3.96
45 46 1.135139 GAAGCTGATCCTACGACTGCA 59.865 52.381 0.00 0.00 0.00 4.41
46 47 1.846541 GAAGCTGATCCTACGACTGC 58.153 55.000 0.00 0.00 0.00 4.40
47 48 1.402259 ACGAAGCTGATCCTACGACTG 59.598 52.381 0.00 0.00 0.00 3.51
48 49 1.752683 ACGAAGCTGATCCTACGACT 58.247 50.000 0.00 0.00 0.00 4.18
49 50 2.186076 CAACGAAGCTGATCCTACGAC 58.814 52.381 0.00 0.00 0.00 4.34
50 51 1.469251 GCAACGAAGCTGATCCTACGA 60.469 52.381 0.00 0.00 0.00 3.43
51 52 0.924090 GCAACGAAGCTGATCCTACG 59.076 55.000 0.00 0.00 0.00 3.51
52 53 2.197577 GAGCAACGAAGCTGATCCTAC 58.802 52.381 10.83 0.00 46.75 3.18
53 54 1.202302 CGAGCAACGAAGCTGATCCTA 60.202 52.381 10.83 0.00 46.75 2.94
54 55 0.459237 CGAGCAACGAAGCTGATCCT 60.459 55.000 10.83 0.00 46.75 3.24
55 56 2.002127 CGAGCAACGAAGCTGATCC 58.998 57.895 10.83 0.00 46.75 3.36
56 57 1.346538 GCGAGCAACGAAGCTGATC 59.653 57.895 10.83 0.00 46.75 2.92
57 58 2.103042 GGCGAGCAACGAAGCTGAT 61.103 57.895 10.83 0.00 46.75 2.90
58 59 2.738521 GGCGAGCAACGAAGCTGA 60.739 61.111 10.83 0.00 46.75 4.26
59 60 2.734673 GAGGCGAGCAACGAAGCTG 61.735 63.158 10.83 5.36 46.75 4.24
61 62 3.491652 GGAGGCGAGCAACGAAGC 61.492 66.667 7.46 0.00 45.77 3.86
62 63 2.097038 CAGGAGGCGAGCAACGAAG 61.097 63.158 7.46 0.00 45.77 3.79
63 64 2.048222 CAGGAGGCGAGCAACGAA 60.048 61.111 7.46 0.00 45.77 3.85
64 65 4.069232 CCAGGAGGCGAGCAACGA 62.069 66.667 7.46 0.00 45.77 3.85
66 67 3.706373 TCCCAGGAGGCGAGCAAC 61.706 66.667 0.00 0.00 34.51 4.17
67 68 3.706373 GTCCCAGGAGGCGAGCAA 61.706 66.667 0.00 0.00 34.51 3.91
70 71 3.827898 GACGTCCCAGGAGGCGAG 61.828 72.222 3.51 0.00 38.19 5.03
73 74 3.140225 GATCGACGTCCCAGGAGGC 62.140 68.421 10.58 0.00 33.79 4.70
74 75 2.835705 CGATCGACGTCCCAGGAGG 61.836 68.421 10.26 4.86 37.22 4.30
75 76 2.716244 CGATCGACGTCCCAGGAG 59.284 66.667 10.26 0.00 37.22 3.69
76 77 3.515286 GCGATCGACGTCCCAGGA 61.515 66.667 21.57 1.18 44.60 3.86
77 78 3.822192 TGCGATCGACGTCCCAGG 61.822 66.667 21.57 0.00 44.60 4.45
78 79 2.579787 GTGCGATCGACGTCCCAG 60.580 66.667 21.57 0.18 44.60 4.45
79 80 3.366915 TGTGCGATCGACGTCCCA 61.367 61.111 21.57 2.60 44.60 4.37
80 81 2.879462 GTGTGCGATCGACGTCCC 60.879 66.667 21.57 0.00 44.60 4.46
81 82 3.238241 CGTGTGCGATCGACGTCC 61.238 66.667 21.57 0.24 44.60 4.79
82 83 3.887327 GCGTGTGCGATCGACGTC 61.887 66.667 21.57 5.18 44.60 4.34
92 93 2.563086 GATTGCTACCACGCGTGTGC 62.563 60.000 34.81 31.56 45.04 4.57
93 94 1.419922 GATTGCTACCACGCGTGTG 59.580 57.895 34.81 27.42 46.00 3.82
94 95 2.092291 CGATTGCTACCACGCGTGT 61.092 57.895 34.81 24.84 0.00 4.49
95 96 2.695055 CGATTGCTACCACGCGTG 59.305 61.111 31.77 31.77 0.00 5.34
96 97 3.186047 GCGATTGCTACCACGCGT 61.186 61.111 5.58 5.58 41.49 6.01
99 100 3.261951 CCGGCGATTGCTACCACG 61.262 66.667 9.30 0.00 42.25 4.94
100 101 2.125269 ACCGGCGATTGCTACCAC 60.125 61.111 9.30 0.00 42.25 4.16
101 102 2.125310 CACCGGCGATTGCTACCA 60.125 61.111 9.30 0.00 42.25 3.25
102 103 2.895372 CCACCGGCGATTGCTACC 60.895 66.667 9.30 0.00 42.25 3.18
103 104 2.125269 ACCACCGGCGATTGCTAC 60.125 61.111 9.30 0.00 42.25 3.58
104 105 2.185867 GACCACCGGCGATTGCTA 59.814 61.111 9.30 0.00 42.25 3.49
105 106 3.706373 AGACCACCGGCGATTGCT 61.706 61.111 9.30 0.00 42.25 3.91
106 107 3.499737 CAGACCACCGGCGATTGC 61.500 66.667 9.30 0.00 41.71 3.56
107 108 2.100631 GTCAGACCACCGGCGATTG 61.101 63.158 9.30 4.78 0.00 2.67
108 109 2.264794 GTCAGACCACCGGCGATT 59.735 61.111 9.30 0.00 0.00 3.34
109 110 4.129737 CGTCAGACCACCGGCGAT 62.130 66.667 9.30 0.00 0.00 4.58
111 112 3.678717 CTACGTCAGACCACCGGCG 62.679 68.421 0.00 0.00 0.00 6.46
112 113 1.870055 TTCTACGTCAGACCACCGGC 61.870 60.000 0.00 0.00 31.12 6.13
113 114 0.599558 TTTCTACGTCAGACCACCGG 59.400 55.000 0.00 0.00 31.12 5.28
114 115 1.668047 GGTTTCTACGTCAGACCACCG 60.668 57.143 0.00 0.00 30.50 4.94
115 116 1.337541 GGGTTTCTACGTCAGACCACC 60.338 57.143 8.81 9.98 36.61 4.61
116 117 1.617357 AGGGTTTCTACGTCAGACCAC 59.383 52.381 8.81 3.57 31.12 4.16
117 118 2.005370 AGGGTTTCTACGTCAGACCA 57.995 50.000 8.81 0.00 31.12 4.02
118 119 3.128415 GTCTAGGGTTTCTACGTCAGACC 59.872 52.174 0.00 0.00 31.12 3.85
119 120 4.009002 AGTCTAGGGTTTCTACGTCAGAC 58.991 47.826 0.00 0.00 31.12 3.51
120 121 4.298103 AGTCTAGGGTTTCTACGTCAGA 57.702 45.455 0.00 0.00 0.00 3.27
121 122 4.458295 TGAAGTCTAGGGTTTCTACGTCAG 59.542 45.833 0.00 0.00 0.00 3.51
122 123 4.401022 TGAAGTCTAGGGTTTCTACGTCA 58.599 43.478 0.00 0.00 0.00 4.35
123 124 4.674885 GCTGAAGTCTAGGGTTTCTACGTC 60.675 50.000 0.00 0.00 0.00 4.34
124 125 3.193056 GCTGAAGTCTAGGGTTTCTACGT 59.807 47.826 0.00 0.00 0.00 3.57
125 126 3.731264 CGCTGAAGTCTAGGGTTTCTACG 60.731 52.174 0.00 0.00 0.00 3.51
126 127 3.193056 ACGCTGAAGTCTAGGGTTTCTAC 59.807 47.826 0.00 0.00 38.01 2.59
127 128 3.428532 ACGCTGAAGTCTAGGGTTTCTA 58.571 45.455 0.00 0.00 38.01 2.10
128 129 2.231721 GACGCTGAAGTCTAGGGTTTCT 59.768 50.000 0.00 0.00 40.80 2.52
129 130 2.608268 GACGCTGAAGTCTAGGGTTTC 58.392 52.381 0.00 0.00 40.80 2.78
130 131 1.067776 CGACGCTGAAGTCTAGGGTTT 60.068 52.381 0.00 0.00 40.80 3.27
131 132 0.526662 CGACGCTGAAGTCTAGGGTT 59.473 55.000 0.00 0.00 40.80 4.11
132 133 1.935327 GCGACGCTGAAGTCTAGGGT 61.935 60.000 13.73 0.00 43.01 4.34
133 134 1.226717 GCGACGCTGAAGTCTAGGG 60.227 63.158 13.73 0.00 38.90 3.53
134 135 1.226717 GGCGACGCTGAAGTCTAGG 60.227 63.158 20.77 0.00 38.90 3.02
135 136 4.386245 GGCGACGCTGAAGTCTAG 57.614 61.111 20.77 0.00 38.90 2.43
147 148 4.430765 TCTTCCTTCGGCGGCGAC 62.431 66.667 34.85 7.01 0.00 5.19
148 149 4.129737 CTCTTCCTTCGGCGGCGA 62.130 66.667 31.46 31.46 0.00 5.54
150 151 4.083862 ACCTCTTCCTTCGGCGGC 62.084 66.667 7.21 0.00 0.00 6.53
151 152 2.125512 CACCTCTTCCTTCGGCGG 60.126 66.667 7.21 0.00 0.00 6.13
152 153 2.125512 CCACCTCTTCCTTCGGCG 60.126 66.667 0.00 0.00 0.00 6.46
153 154 1.079057 GTCCACCTCTTCCTTCGGC 60.079 63.158 0.00 0.00 0.00 5.54
154 155 0.533032 GAGTCCACCTCTTCCTTCGG 59.467 60.000 0.00 0.00 37.22 4.30
163 164 1.832366 GGGTTTCCTAGAGTCCACCTC 59.168 57.143 0.00 0.00 40.80 3.85
164 165 1.437547 AGGGTTTCCTAGAGTCCACCT 59.562 52.381 0.00 0.00 42.75 4.00
165 166 1.954035 AGGGTTTCCTAGAGTCCACC 58.046 55.000 0.00 0.00 42.75 4.61
191 192 1.001378 GGTGAGCATGCGTGAGTTTTT 60.001 47.619 13.01 0.00 0.00 1.94
192 193 0.593128 GGTGAGCATGCGTGAGTTTT 59.407 50.000 13.01 0.00 0.00 2.43
193 194 0.250467 AGGTGAGCATGCGTGAGTTT 60.250 50.000 13.01 0.00 0.00 2.66
194 195 0.250467 AAGGTGAGCATGCGTGAGTT 60.250 50.000 13.01 1.81 0.00 3.01
195 196 0.608130 TAAGGTGAGCATGCGTGAGT 59.392 50.000 13.01 0.00 0.00 3.41
196 197 1.284657 CTAAGGTGAGCATGCGTGAG 58.715 55.000 13.01 0.39 0.00 3.51
197 198 0.608130 ACTAAGGTGAGCATGCGTGA 59.392 50.000 13.01 0.00 0.00 4.35
198 199 1.129251 CAACTAAGGTGAGCATGCGTG 59.871 52.381 13.01 0.09 0.00 5.34
199 200 1.270839 ACAACTAAGGTGAGCATGCGT 60.271 47.619 13.01 0.00 0.00 5.24
200 201 1.442769 ACAACTAAGGTGAGCATGCG 58.557 50.000 13.01 0.00 0.00 4.73
201 202 2.095059 CCAACAACTAAGGTGAGCATGC 60.095 50.000 10.51 10.51 0.00 4.06
202 203 2.489329 CCCAACAACTAAGGTGAGCATG 59.511 50.000 0.00 0.00 0.00 4.06
203 204 2.108250 ACCCAACAACTAAGGTGAGCAT 59.892 45.455 0.00 0.00 0.00 3.79
204 205 1.493022 ACCCAACAACTAAGGTGAGCA 59.507 47.619 0.00 0.00 0.00 4.26
205 206 2.271944 ACCCAACAACTAAGGTGAGC 57.728 50.000 0.00 0.00 0.00 4.26
206 207 5.238650 CACTAAACCCAACAACTAAGGTGAG 59.761 44.000 0.00 0.00 31.45 3.51
207 208 5.127491 CACTAAACCCAACAACTAAGGTGA 58.873 41.667 0.00 0.00 31.45 4.02
208 209 4.261447 GCACTAAACCCAACAACTAAGGTG 60.261 45.833 0.00 0.00 31.45 4.00
209 210 3.887110 GCACTAAACCCAACAACTAAGGT 59.113 43.478 0.00 0.00 0.00 3.50
210 211 4.023193 CAGCACTAAACCCAACAACTAAGG 60.023 45.833 0.00 0.00 0.00 2.69
211 212 4.023193 CCAGCACTAAACCCAACAACTAAG 60.023 45.833 0.00 0.00 0.00 2.18
268 1056 5.786401 AGCAAGCTAACTGAAATTACTCG 57.214 39.130 0.00 0.00 0.00 4.18
300 1088 0.701731 TGAACCCCCAATGTACCCAG 59.298 55.000 0.00 0.00 0.00 4.45
363 1151 0.107165 GCCCGACCTAGCCTTGATTT 60.107 55.000 0.00 0.00 0.00 2.17
392 1180 1.501169 CGCGCATGTCTATCCATCAA 58.499 50.000 8.75 0.00 0.00 2.57
434 1222 2.035632 TGCAAAACTCCGGGTGAATTT 58.964 42.857 0.00 1.60 0.00 1.82
613 1405 2.517959 TCTCAACAAGAAGCAATGGGG 58.482 47.619 0.00 0.00 0.00 4.96
631 1423 5.028131 TCTACCGGAACCCTTTCTATTTCT 58.972 41.667 9.46 0.00 31.71 2.52
672 1464 6.169094 AGAGGTAGCGATGGATTATGAAATG 58.831 40.000 0.00 0.00 0.00 2.32
693 1485 2.477845 CGCGCTTTGCTTGGAGAG 59.522 61.111 5.56 0.00 43.27 3.20
742 1534 5.230097 CAGCAAGATATATATACGTGCACCG 59.770 44.000 22.10 9.19 40.30 4.94
752 1544 2.483714 CCGCCGGCAGCAAGATATATAT 60.484 50.000 28.98 0.00 44.04 0.86
772 1573 2.046217 GAAGGGTGCCTCGTTCCC 60.046 66.667 0.00 0.00 41.36 3.97
887 1689 5.751680 ACAAATGTGAAGAAACGACATGAG 58.248 37.500 0.00 0.00 30.69 2.90
927 1729 7.699812 GGCTTATCATGTGAAGAAACAAGAATC 59.300 37.037 11.87 0.00 32.11 2.52
929 1731 6.489700 TGGCTTATCATGTGAAGAAACAAGAA 59.510 34.615 11.87 0.00 32.11 2.52
981 1783 4.097135 GGCATTTTCCCTTTCTTAGCTCTC 59.903 45.833 0.00 0.00 0.00 3.20
982 1784 4.019858 GGCATTTTCCCTTTCTTAGCTCT 58.980 43.478 0.00 0.00 0.00 4.09
989 1791 2.316108 ACAACGGCATTTTCCCTTTCT 58.684 42.857 0.00 0.00 0.00 2.52
999 1801 2.422597 TCTCGATCAAACAACGGCATT 58.577 42.857 0.00 0.00 0.00 3.56
1089 1891 2.600769 AAGAGGACGACCGTGGCT 60.601 61.111 0.00 0.00 41.83 4.75
1232 2034 3.179265 GTGTCATGTCGGCGTCGG 61.179 66.667 10.62 0.00 36.95 4.79
1252 2054 0.395586 TTGGCAGCCTTGTCTGTTGT 60.396 50.000 14.15 0.00 36.49 3.32
1266 2068 2.119611 TCGTCCTCCTCCTTGGCA 59.880 61.111 0.00 0.00 35.26 4.92
1417 2222 4.803426 GCCGCTGTCGTGAGAGGG 62.803 72.222 4.36 4.36 43.49 4.30
1535 2340 2.028484 GGTTCGTGCCTGTCGACA 59.972 61.111 18.88 18.88 37.05 4.35
1572 2377 2.549611 CTTCCTCCGTGTCCTGCTCG 62.550 65.000 0.00 0.00 0.00 5.03
1573 2378 1.216710 CTTCCTCCGTGTCCTGCTC 59.783 63.158 0.00 0.00 0.00 4.26
1574 2379 2.948720 GCTTCCTCCGTGTCCTGCT 61.949 63.158 0.00 0.00 0.00 4.24
1575 2380 2.435059 GCTTCCTCCGTGTCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
1576 2381 2.125912 CGCTTCCTCCGTGTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
1577 2382 2.282958 TCGCTTCCTCCGTGTCCT 60.283 61.111 0.00 0.00 0.00 3.85
1578 2383 2.126031 GTCGCTTCCTCCGTGTCC 60.126 66.667 0.00 0.00 0.00 4.02
1579 2384 2.504244 CGTCGCTTCCTCCGTGTC 60.504 66.667 0.00 0.00 0.00 3.67
1580 2385 2.981909 TCGTCGCTTCCTCCGTGT 60.982 61.111 0.00 0.00 0.00 4.49
1581 2386 2.504244 GTCGTCGCTTCCTCCGTG 60.504 66.667 0.00 0.00 0.00 4.94
1582 2387 3.745803 GGTCGTCGCTTCCTCCGT 61.746 66.667 0.00 0.00 0.00 4.69
1583 2388 4.831307 CGGTCGTCGCTTCCTCCG 62.831 72.222 0.00 0.00 0.00 4.63
1584 2389 3.437795 TCGGTCGTCGCTTCCTCC 61.438 66.667 0.00 0.00 39.05 4.30
1585 2390 2.202453 GTCGGTCGTCGCTTCCTC 60.202 66.667 0.00 0.00 39.05 3.71
1586 2391 2.473664 CTTGTCGGTCGTCGCTTCCT 62.474 60.000 0.00 0.00 39.05 3.36
1587 2392 2.049802 TTGTCGGTCGTCGCTTCC 60.050 61.111 0.00 0.00 39.05 3.46
1588 2393 2.087009 CCTTGTCGGTCGTCGCTTC 61.087 63.158 0.00 0.00 39.05 3.86
1589 2394 2.049433 CCTTGTCGGTCGTCGCTT 60.049 61.111 0.00 0.00 39.05 4.68
1590 2395 4.052229 CCCTTGTCGGTCGTCGCT 62.052 66.667 0.00 0.00 39.05 4.93
1600 2405 4.821589 CTCCTCGGCGCCCTTGTC 62.822 72.222 23.46 0.00 0.00 3.18
1602 2407 4.821589 GACTCCTCGGCGCCCTTG 62.822 72.222 23.46 11.05 0.00 3.61
1609 2414 2.341101 TTCCTGTCGACTCCTCGGC 61.341 63.158 17.92 0.00 45.22 5.54
1610 2415 1.507174 GTTCCTGTCGACTCCTCGG 59.493 63.158 17.92 9.24 40.58 4.63
1611 2416 1.134901 CGTTCCTGTCGACTCCTCG 59.865 63.158 17.92 11.02 41.65 4.63
1612 2417 0.879765 TTCGTTCCTGTCGACTCCTC 59.120 55.000 17.92 3.02 37.05 3.71
1613 2418 0.882474 CTTCGTTCCTGTCGACTCCT 59.118 55.000 17.92 0.00 37.05 3.69
1614 2419 0.733223 GCTTCGTTCCTGTCGACTCC 60.733 60.000 17.92 0.00 37.05 3.85
1615 2420 0.039437 TGCTTCGTTCCTGTCGACTC 60.039 55.000 17.92 1.64 37.05 3.36
1616 2421 0.039074 CTGCTTCGTTCCTGTCGACT 60.039 55.000 17.92 0.00 37.05 4.18
1617 2422 0.039437 TCTGCTTCGTTCCTGTCGAC 60.039 55.000 9.11 9.11 37.05 4.20
1618 2423 0.241213 CTCTGCTTCGTTCCTGTCGA 59.759 55.000 0.00 0.00 35.50 4.20
1619 2424 1.347817 GCTCTGCTTCGTTCCTGTCG 61.348 60.000 0.00 0.00 0.00 4.35
1620 2425 1.347817 CGCTCTGCTTCGTTCCTGTC 61.348 60.000 0.00 0.00 0.00 3.51
1621 2426 1.373497 CGCTCTGCTTCGTTCCTGT 60.373 57.895 0.00 0.00 0.00 4.00
1622 2427 2.097038 CCGCTCTGCTTCGTTCCTG 61.097 63.158 0.00 0.00 0.00 3.86
1623 2428 2.262915 CCGCTCTGCTTCGTTCCT 59.737 61.111 0.00 0.00 0.00 3.36
1624 2429 3.491652 GCCGCTCTGCTTCGTTCC 61.492 66.667 0.00 0.00 0.00 3.62
1625 2430 2.734673 CTGCCGCTCTGCTTCGTTC 61.735 63.158 0.00 0.00 0.00 3.95
1626 2431 2.740055 CTGCCGCTCTGCTTCGTT 60.740 61.111 0.00 0.00 0.00 3.85
1629 2434 3.052082 TTGCTGCCGCTCTGCTTC 61.052 61.111 0.70 0.00 39.95 3.86
1630 2435 3.360340 GTTGCTGCCGCTCTGCTT 61.360 61.111 0.70 0.00 39.95 3.91
1631 2436 4.631247 TGTTGCTGCCGCTCTGCT 62.631 61.111 0.70 0.00 39.95 4.24
1632 2437 3.663176 TTGTTGCTGCCGCTCTGC 61.663 61.111 0.70 0.00 39.73 4.26
1633 2438 2.253452 GTTGTTGCTGCCGCTCTG 59.747 61.111 0.70 0.00 36.97 3.35
1634 2439 3.349006 CGTTGTTGCTGCCGCTCT 61.349 61.111 0.70 0.00 36.97 4.09
1640 2445 3.032033 GCTTGGCGTTGTTGCTGC 61.032 61.111 0.00 0.00 34.52 5.25
1641 2446 1.659335 CTGCTTGGCGTTGTTGCTG 60.659 57.895 0.00 0.00 34.52 4.41
1642 2447 1.383456 TTCTGCTTGGCGTTGTTGCT 61.383 50.000 0.00 0.00 34.52 3.91
1643 2448 1.065600 TTCTGCTTGGCGTTGTTGC 59.934 52.632 0.00 0.00 0.00 4.17
1644 2449 0.100325 TGTTCTGCTTGGCGTTGTTG 59.900 50.000 0.00 0.00 0.00 3.33
1645 2450 0.100503 GTGTTCTGCTTGGCGTTGTT 59.899 50.000 0.00 0.00 0.00 2.83
1646 2451 1.727467 GTGTTCTGCTTGGCGTTGT 59.273 52.632 0.00 0.00 0.00 3.32
1647 2452 1.369209 CGTGTTCTGCTTGGCGTTG 60.369 57.895 0.00 0.00 0.00 4.10
1648 2453 2.542907 CCGTGTTCTGCTTGGCGTT 61.543 57.895 0.00 0.00 0.00 4.84
1649 2454 2.972505 CCGTGTTCTGCTTGGCGT 60.973 61.111 0.00 0.00 0.00 5.68
1654 2459 1.674057 CCTCCTCCGTGTTCTGCTT 59.326 57.895 0.00 0.00 0.00 3.91
1656 2461 2.435059 GCCTCCTCCGTGTTCTGC 60.435 66.667 0.00 0.00 0.00 4.26
1743 2548 2.979649 GTCCCCTCCTCCGTGTTC 59.020 66.667 0.00 0.00 0.00 3.18
1757 2562 2.504244 CGCTCTTGTCGGTCGTCC 60.504 66.667 0.00 0.00 0.00 4.79
1758 2563 3.173240 GCGCTCTTGTCGGTCGTC 61.173 66.667 0.00 0.00 0.00 4.20
1849 2654 1.437573 CATCCTCGGCGCTCTTGTA 59.562 57.895 7.64 0.00 0.00 2.41
1905 2734 0.872881 CGGTGTCCGTCGTGTCTTTT 60.873 55.000 0.00 0.00 42.73 2.27
1907 2736 2.333938 CGGTGTCCGTCGTGTCTT 59.666 61.111 0.00 0.00 42.73 3.01
1933 2762 2.084546 AGTGCCGGAGCTTTTATCAAC 58.915 47.619 5.05 0.00 40.80 3.18
1949 2778 2.202623 CGCCGGTCTCTGTAGTGC 60.203 66.667 1.90 0.00 0.00 4.40
1997 2826 0.891373 CTCAGCCTTCTTCTCGGTCA 59.109 55.000 0.00 0.00 0.00 4.02
1998 2827 1.135228 GTCTCAGCCTTCTTCTCGGTC 60.135 57.143 0.00 0.00 0.00 4.79
2012 2841 4.403752 TGGTGATGTTATCCTCTGTCTCAG 59.596 45.833 0.00 0.00 0.00 3.35
2022 2851 4.671766 GCGTTCTTGTTGGTGATGTTATCC 60.672 45.833 0.00 0.00 0.00 2.59
2064 2893 1.441016 GTCGCCAGCTTCTTTTGCG 60.441 57.895 0.00 0.00 46.09 4.85
2088 2917 1.480954 GCCGTCTGGTTCTTCTCCATA 59.519 52.381 0.00 0.00 37.67 2.74
2090 2919 1.671742 GCCGTCTGGTTCTTCTCCA 59.328 57.895 0.00 0.00 37.67 3.86
2106 2935 4.790861 GTCCGGTCGTCGAAGGCC 62.791 72.222 12.36 12.36 42.43 5.19
2181 3010 1.185618 TCTGGTTCCTGGGTCTGTCG 61.186 60.000 0.00 0.00 0.00 4.35
2186 3015 1.280457 AGATGTCTGGTTCCTGGGTC 58.720 55.000 0.00 0.00 0.00 4.46
2187 3016 2.188817 GTAGATGTCTGGTTCCTGGGT 58.811 52.381 0.00 0.00 0.00 4.51
2217 3046 3.003793 CGTCTTCTTCAGAGAGTGTGTCA 59.996 47.826 0.00 0.00 32.44 3.58
2283 3112 3.057547 CTCCGTCACTGGCCTCTCG 62.058 68.421 3.32 1.80 0.00 4.04
2320 3149 3.793144 CAGCTCCGCCGTTTCTGC 61.793 66.667 0.00 0.00 0.00 4.26
2361 3190 1.490258 CGTCGTCGTCTCGTTGAGA 59.510 57.895 0.00 0.00 36.22 3.27
2423 3252 3.642778 TTTCGCGCCTTCTCCTCGG 62.643 63.158 0.00 0.00 0.00 4.63
2439 3268 3.749226 CTCCTTCTTCTTCCTGCTGTTT 58.251 45.455 0.00 0.00 0.00 2.83
2451 3280 2.550180 GTTGTTCTGGTGCTCCTTCTTC 59.450 50.000 6.34 0.00 34.23 2.87
2452 3281 2.576615 GTTGTTCTGGTGCTCCTTCTT 58.423 47.619 6.34 0.00 34.23 2.52
2453 3282 1.541233 CGTTGTTCTGGTGCTCCTTCT 60.541 52.381 6.34 0.00 34.23 2.85
2464 3293 0.667993 ACCACATTGCCGTTGTTCTG 59.332 50.000 0.00 0.00 0.00 3.02
2472 3301 2.668212 ACGACCACCACATTGCCG 60.668 61.111 0.00 0.00 0.00 5.69
2478 3307 3.968568 CCGACGACGACCACCACA 61.969 66.667 9.28 0.00 42.66 4.17
2517 3346 0.601558 ACAGCTTCCACACGTACGAT 59.398 50.000 24.41 6.62 0.00 3.73
2598 3427 1.602311 AGTGCTTGTTGCTCTTGAGG 58.398 50.000 0.00 0.00 42.11 3.86
2988 3820 4.735132 TCGTCCTTGGGCGCGAAG 62.735 66.667 12.10 4.34 30.26 3.79
3060 3892 2.741985 CGCTTCGTGCCCATCACA 60.742 61.111 0.00 0.00 45.92 3.58
3463 4297 5.803967 AGCAAGCGATTCATGAAGAAAAATC 59.196 36.000 14.54 4.46 40.22 2.17
3464 4298 5.717119 AGCAAGCGATTCATGAAGAAAAAT 58.283 33.333 14.54 0.00 40.22 1.82
3466 4300 4.456911 AGAGCAAGCGATTCATGAAGAAAA 59.543 37.500 14.54 0.00 40.22 2.29
3467 4301 4.005650 AGAGCAAGCGATTCATGAAGAAA 58.994 39.130 14.54 0.00 40.22 2.52
3468 4302 3.603532 AGAGCAAGCGATTCATGAAGAA 58.396 40.909 14.54 0.00 41.28 2.52
3473 4307 2.602456 GCATGAGAGCAAGCGATTCATG 60.602 50.000 21.20 21.20 44.85 3.07
3474 4308 1.602851 GCATGAGAGCAAGCGATTCAT 59.397 47.619 0.00 4.10 0.00 2.57
3506 4344 2.684001 ATGTTCCTGCCATGCAATTG 57.316 45.000 0.00 0.00 38.41 2.32
3721 4559 2.109799 CCCATGCCGCTCAGGTAG 59.890 66.667 0.00 0.00 43.70 3.18
3812 4670 2.746362 GCTCCTCCTTCAACACAATGAG 59.254 50.000 0.00 0.00 0.00 2.90
3815 4673 2.957402 TGCTCCTCCTTCAACACAAT 57.043 45.000 0.00 0.00 0.00 2.71
3848 4714 2.540265 ACCTGATCGATCAAGCCATC 57.460 50.000 27.09 0.23 36.18 3.51
3884 4756 0.400213 TCACCCACACCTTCATGTCC 59.600 55.000 0.00 0.00 0.00 4.02
3932 4804 0.313987 CGTAGATGATGGGCAGCGTA 59.686 55.000 0.00 0.00 38.13 4.42
4181 5053 3.866582 GCCATCCGGACCTCCCAG 61.867 72.222 6.12 0.00 34.14 4.45
4273 5145 3.537795 ACTAGTGGTGGTGTTCCTAGA 57.462 47.619 0.00 0.00 31.66 2.43
4284 5156 4.334203 TGTGTTTGCAAAGTACTAGTGGTG 59.666 41.667 13.26 0.00 0.00 4.17
4287 5159 6.017934 ACTCATGTGTTTGCAAAGTACTAGTG 60.018 38.462 13.26 13.81 0.00 2.74
4290 5162 7.875554 TGATACTCATGTGTTTGCAAAGTACTA 59.124 33.333 13.26 6.61 0.00 1.82
4310 5212 4.970860 ATTGCTGCCATACTCTGATACT 57.029 40.909 0.00 0.00 0.00 2.12
4311 5213 5.119279 CGTTATTGCTGCCATACTCTGATAC 59.881 44.000 0.00 0.00 0.00 2.24
4312 5214 5.010617 TCGTTATTGCTGCCATACTCTGATA 59.989 40.000 0.00 0.00 0.00 2.15
4313 5215 4.060900 CGTTATTGCTGCCATACTCTGAT 58.939 43.478 0.00 0.00 0.00 2.90
4314 5216 3.132111 TCGTTATTGCTGCCATACTCTGA 59.868 43.478 0.00 0.00 0.00 3.27
4315 5217 3.457234 TCGTTATTGCTGCCATACTCTG 58.543 45.455 0.00 0.00 0.00 3.35
4316 5218 3.819564 TCGTTATTGCTGCCATACTCT 57.180 42.857 0.00 0.00 0.00 3.24
4317 5219 4.875544 TTTCGTTATTGCTGCCATACTC 57.124 40.909 0.00 0.00 0.00 2.59
4443 5345 4.701651 TCAGTGCCATTAGTGAGATTTTGG 59.298 41.667 0.00 0.00 0.00 3.28
4444 5346 5.885230 TCAGTGCCATTAGTGAGATTTTG 57.115 39.130 0.00 0.00 0.00 2.44
4447 5351 6.006449 AGTTTTCAGTGCCATTAGTGAGATT 58.994 36.000 0.00 0.00 32.05 2.40
4450 5354 6.595326 TCATAGTTTTCAGTGCCATTAGTGAG 59.405 38.462 0.00 0.00 32.05 3.51
4465 5369 6.877611 TGTTCTTGGGAGTTCATAGTTTTC 57.122 37.500 0.00 0.00 0.00 2.29
4466 5370 7.234355 AGATGTTCTTGGGAGTTCATAGTTTT 58.766 34.615 0.00 0.00 0.00 2.43
4470 5374 5.130145 AGGAGATGTTCTTGGGAGTTCATAG 59.870 44.000 0.00 0.00 0.00 2.23
4474 5378 3.990959 AGGAGATGTTCTTGGGAGTTC 57.009 47.619 0.00 0.00 0.00 3.01
4499 5403 4.745125 CGTTCATATAGTACTGTTGCCTGG 59.255 45.833 5.39 0.00 0.00 4.45
4565 5482 1.893919 GAGTCAGTCAGCCAGTCCCC 61.894 65.000 0.00 0.00 0.00 4.81
4590 5513 6.971602 AGCTTAATGCATTGATGATTGAGAG 58.028 36.000 22.27 0.00 45.94 3.20
4604 5527 9.573166 AATGGATTTATGTACTAGCTTAATGCA 57.427 29.630 0.00 0.00 45.94 3.96
4620 5543 7.049754 GCAATTTTCCTGTGGAATGGATTTAT 58.950 34.615 0.00 0.00 41.71 1.40
4622 5545 5.221884 TGCAATTTTCCTGTGGAATGGATTT 60.222 36.000 0.00 0.00 41.71 2.17
4623 5546 4.286549 TGCAATTTTCCTGTGGAATGGATT 59.713 37.500 0.00 0.08 41.71 3.01
4624 5547 3.839490 TGCAATTTTCCTGTGGAATGGAT 59.161 39.130 0.00 0.00 41.71 3.41
4625 5548 3.237746 TGCAATTTTCCTGTGGAATGGA 58.762 40.909 0.00 0.00 41.71 3.41
4626 5549 3.681593 TGCAATTTTCCTGTGGAATGG 57.318 42.857 0.00 0.00 41.71 3.16
4627 5550 4.628333 GTGATGCAATTTTCCTGTGGAATG 59.372 41.667 0.00 0.00 41.71 2.67
4628 5551 4.283978 TGTGATGCAATTTTCCTGTGGAAT 59.716 37.500 0.00 0.00 41.71 3.01
4629 5552 3.640498 TGTGATGCAATTTTCCTGTGGAA 59.360 39.130 0.00 0.00 40.27 3.53
4630 5553 3.005684 GTGTGATGCAATTTTCCTGTGGA 59.994 43.478 0.00 0.00 0.00 4.02
4631 5554 3.319755 GTGTGATGCAATTTTCCTGTGG 58.680 45.455 0.00 0.00 0.00 4.17
4632 5555 3.319755 GGTGTGATGCAATTTTCCTGTG 58.680 45.455 0.00 0.00 0.00 3.66
4633 5556 2.299867 GGGTGTGATGCAATTTTCCTGT 59.700 45.455 0.00 0.00 0.00 4.00
4634 5557 2.354003 GGGGTGTGATGCAATTTTCCTG 60.354 50.000 0.00 0.00 0.00 3.86
4635 5558 1.901833 GGGGTGTGATGCAATTTTCCT 59.098 47.619 0.00 0.00 0.00 3.36
4636 5559 1.622811 TGGGGTGTGATGCAATTTTCC 59.377 47.619 0.00 0.00 0.00 3.13
4637 5560 2.299867 ACTGGGGTGTGATGCAATTTTC 59.700 45.455 0.00 0.00 0.00 2.29
4724 5663 5.407387 TCTCTGCGGTAAACTCAAATGTTAC 59.593 40.000 0.00 0.00 0.00 2.50
4732 5671 2.560981 TGATGTCTCTGCGGTAAACTCA 59.439 45.455 0.00 0.00 0.00 3.41
4832 5785 0.598680 CGCAAGATTCTAGAGGGCCG 60.599 60.000 0.00 0.00 43.02 6.13
4851 5804 3.548818 GCGGTGATGATAACAGGCAATTC 60.549 47.826 0.00 0.00 0.00 2.17
4974 5927 3.052869 AGAACCCTCCAAAAGTGAACCTT 60.053 43.478 0.00 0.00 33.79 3.50
5016 5969 3.974835 TATGTGGCGGCAGGCTGTG 62.975 63.158 13.91 10.34 44.18 3.66
5091 6044 6.934083 TGAGCATGAAGTGAGTTAATTGTGTA 59.066 34.615 0.00 0.00 0.00 2.90
5126 6079 6.932400 TCTCGTTGTCACCTTGTATAAATGTT 59.068 34.615 0.00 0.00 0.00 2.71
5177 6130 6.721571 TTTCGATGGCTTAGTTTAGAAGTG 57.278 37.500 0.00 0.00 0.00 3.16
5222 6175 6.852345 GCATTTTGCTTTATTTTGTTCACCTG 59.148 34.615 0.00 0.00 40.96 4.00
5228 6181 6.940831 AGTGGCATTTTGCTTTATTTTGTT 57.059 29.167 0.00 0.00 44.28 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.