Multiple sequence alignment - TraesCS5A01G114000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G114000 chr5A 100.000 6641 0 0 1 6641 227706049 227712689 0.000000e+00 12264.0
1 TraesCS5A01G114000 chr5A 100.000 1488 0 0 6939 8426 227712987 227714474 0.000000e+00 2748.0
2 TraesCS5A01G114000 chr5A 100.000 185 0 0 3735 3919 326040692 326040876 8.100000e-90 342.0
3 TraesCS5A01G114000 chr5A 98.454 194 1 1 3726 3919 340131699 340131890 2.910000e-89 340.0
4 TraesCS5A01G114000 chr5A 100.000 44 0 0 7998 8041 227714002 227714045 1.950000e-11 82.4
5 TraesCS5A01G114000 chr5A 100.000 44 0 0 7954 7997 227714046 227714089 1.950000e-11 82.4
6 TraesCS5A01G114000 chr5D 97.580 3058 58 9 677 3734 198951296 198954337 0.000000e+00 5223.0
7 TraesCS5A01G114000 chr5D 96.165 1356 38 8 5292 6641 198956050 198957397 0.000000e+00 2204.0
8 TraesCS5A01G114000 chr5D 93.551 1070 31 12 6939 7997 198957451 198958493 0.000000e+00 1559.0
9 TraesCS5A01G114000 chr5D 96.718 579 19 0 3920 4498 198954330 198954908 0.000000e+00 965.0
10 TraesCS5A01G114000 chr5D 94.212 622 24 8 4495 5109 198955065 198955681 0.000000e+00 939.0
11 TraesCS5A01G114000 chr5D 93.939 132 6 2 7998 8129 198958451 198958580 1.860000e-46 198.0
12 TraesCS5A01G114000 chr5D 91.791 134 5 4 8124 8251 491000741 491000608 1.870000e-41 182.0
13 TraesCS5A01G114000 chr5D 90.840 131 6 4 8127 8251 238148662 238148792 4.040000e-38 171.0
14 TraesCS5A01G114000 chr5D 92.105 114 7 2 553 666 198951208 198951319 8.750000e-35 159.0
15 TraesCS5A01G114000 chr5D 82.270 141 21 4 7682 7821 514862749 514862612 1.490000e-22 119.0
16 TraesCS5A01G114000 chr5D 100.000 28 0 0 4560 4587 41364731 41364704 1.500000e-02 52.8
17 TraesCS5A01G114000 chr5B 97.086 3020 75 3 722 3734 209651830 209648817 0.000000e+00 5077.0
18 TraesCS5A01G114000 chr5B 95.693 1068 32 5 6939 7995 209645626 209644562 0.000000e+00 1705.0
19 TraesCS5A01G114000 chr5B 95.080 1057 43 5 3920 4972 209648824 209647773 0.000000e+00 1655.0
20 TraesCS5A01G114000 chr5B 93.692 856 31 11 5289 6126 209647235 209646385 0.000000e+00 1260.0
21 TraesCS5A01G114000 chr5B 97.227 541 8 3 6107 6641 209646218 209645679 0.000000e+00 909.0
22 TraesCS5A01G114000 chr5B 99.471 189 1 0 3731 3919 107732756 107732568 2.250000e-90 344.0
23 TraesCS5A01G114000 chr5B 97.895 190 4 0 3735 3924 245830116 245829927 6.310000e-86 329.0
24 TraesCS5A01G114000 chr5B 98.396 187 3 0 3734 3920 506953921 506953735 6.310000e-86 329.0
25 TraesCS5A01G114000 chr5B 98.387 186 3 0 3734 3919 225521763 225521948 2.270000e-85 327.0
26 TraesCS5A01G114000 chr5B 98.378 185 3 0 3735 3919 144591455 144591271 8.160000e-85 326.0
27 TraesCS5A01G114000 chr5B 97.024 168 3 2 3755 3921 291789284 291789118 1.790000e-71 281.0
28 TraesCS5A01G114000 chr5B 85.199 277 32 4 8123 8390 8354158 8353882 8.330000e-70 276.0
29 TraesCS5A01G114000 chr5B 94.697 132 6 1 7998 8129 209644603 209644473 3.990000e-48 204.0
30 TraesCS5A01G114000 chr5B 90.756 119 8 1 5043 5161 209647774 209647659 1.130000e-33 156.0
31 TraesCS5A01G114000 chr5B 83.929 168 18 6 8128 8287 591646719 591646885 1.460000e-32 152.0
32 TraesCS5A01G114000 chr5B 94.805 77 2 2 7682 7758 472739672 472739746 1.490000e-22 119.0
33 TraesCS5A01G114000 chr5B 80.952 105 13 4 5111 5215 523192795 523192698 9.070000e-10 76.8
34 TraesCS5A01G114000 chr1D 93.357 557 23 7 3 547 62430880 62431434 0.000000e+00 811.0
35 TraesCS5A01G114000 chr1D 90.335 538 38 4 3 536 393432899 393433426 0.000000e+00 693.0
36 TraesCS5A01G114000 chr1A 100.000 187 0 0 3733 3919 333878722 333878908 6.260000e-91 346.0
37 TraesCS5A01G114000 chr6A 100.000 186 0 0 3735 3920 392939387 392939572 2.250000e-90 344.0
38 TraesCS5A01G114000 chr6A 98.947 190 2 0 3737 3926 80879065 80878876 2.910000e-89 340.0
39 TraesCS5A01G114000 chr6A 97.462 197 5 0 3728 3924 272125300 272125496 3.770000e-88 337.0
40 TraesCS5A01G114000 chr6A 98.396 187 3 0 3733 3919 144524100 144524286 6.310000e-86 329.0
41 TraesCS5A01G114000 chr6A 83.566 286 31 10 117 390 614122114 614121833 3.900000e-63 254.0
42 TraesCS5A01G114000 chr6A 77.824 239 37 10 4737 4962 562803631 562803396 5.310000e-27 134.0
43 TraesCS5A01G114000 chr6A 71.503 572 115 27 4732 5266 168086360 168086920 8.940000e-20 110.0
44 TraesCS5A01G114000 chr6B 99.465 187 1 0 3735 3921 259289864 259290050 2.910000e-89 340.0
45 TraesCS5A01G114000 chr6B 98.919 185 2 0 3735 3919 434635270 434635086 1.750000e-86 331.0
46 TraesCS5A01G114000 chr6B 96.196 184 6 1 3737 3919 22720657 22720840 4.940000e-77 300.0
47 TraesCS5A01G114000 chr6B 93.011 186 3 1 3734 3919 83203003 83202828 6.490000e-66 263.0
48 TraesCS5A01G114000 chr6B 75.000 444 76 16 4732 5155 663539890 663540318 1.120000e-38 172.0
49 TraesCS5A01G114000 chr6B 81.959 194 13 8 3734 3921 289693986 289693809 2.450000e-30 145.0
50 TraesCS5A01G114000 chr6B 81.959 194 13 8 3733 3920 438927627 438927450 2.450000e-30 145.0
51 TraesCS5A01G114000 chr6B 81.675 191 13 8 3735 3919 239363626 239363452 1.140000e-28 139.0
52 TraesCS5A01G114000 chr6B 80.829 193 14 8 3734 3919 438924759 438924935 6.860000e-26 130.0
53 TraesCS5A01G114000 chr6B 91.667 84 5 2 7675 7758 583051369 583051288 1.920000e-21 115.0
54 TraesCS5A01G114000 chr1B 99.465 187 1 0 3733 3919 288394633 288394447 2.910000e-89 340.0
55 TraesCS5A01G114000 chr1B 98.936 188 2 0 3732 3919 80963829 80964016 3.770000e-88 337.0
56 TraesCS5A01G114000 chr1B 83.212 274 33 9 8128 8390 335974856 335975127 1.090000e-58 239.0
57 TraesCS5A01G114000 chr1B 91.367 139 10 1 8261 8397 424541682 424541544 1.120000e-43 189.0
58 TraesCS5A01G114000 chr1B 86.538 52 7 0 5172 5223 515895907 515895958 3.290000e-04 58.4
59 TraesCS5A01G114000 chr7B 99.459 185 1 0 3735 3919 51073645 51073829 3.770000e-88 337.0
60 TraesCS5A01G114000 chr7B 88.591 149 16 1 8252 8400 607777543 607777690 6.720000e-41 180.0
61 TraesCS5A01G114000 chr3A 99.459 185 1 0 3735 3919 75962043 75962227 3.770000e-88 337.0
62 TraesCS5A01G114000 chr3A 79.208 303 35 15 8113 8390 662415494 662415793 1.440000e-42 185.0
63 TraesCS5A01G114000 chr3A 91.538 130 5 1 8128 8251 477708330 477708201 3.130000e-39 174.0
64 TraesCS5A01G114000 chr3A 93.506 77 3 2 7682 7758 510298814 510298740 6.910000e-21 113.0
65 TraesCS5A01G114000 chr3A 80.153 131 20 6 5099 5226 87705150 87705277 9.010000e-15 93.5
66 TraesCS5A01G114000 chr7A 97.895 190 4 0 3733 3922 350426477 350426288 6.310000e-86 329.0
67 TraesCS5A01G114000 chr2B 78.072 529 59 25 4736 5219 418671019 418670503 1.790000e-71 281.0
68 TraesCS5A01G114000 chr6D 80.371 377 49 16 27 390 468008042 468007678 6.490000e-66 263.0
69 TraesCS5A01G114000 chr6D 76.159 453 62 27 4737 5151 419589514 419589070 6.670000e-46 196.0
70 TraesCS5A01G114000 chr6D 100.000 30 0 0 5177 5206 438517355 438517384 1.000000e-03 56.5
71 TraesCS5A01G114000 chr4B 84.672 274 30 3 8128 8390 399269481 399269753 6.490000e-66 263.0
72 TraesCS5A01G114000 chr2D 77.066 484 86 19 4737 5207 538774066 538774537 1.090000e-63 255.0
73 TraesCS5A01G114000 chr2D 83.099 213 30 4 8183 8390 30458664 30458453 1.120000e-43 189.0
74 TraesCS5A01G114000 chr2D 88.514 148 7 3 8128 8265 626138873 626138726 4.040000e-38 171.0
75 TraesCS5A01G114000 chr2D 81.119 143 21 6 7682 7821 498106257 498106118 8.940000e-20 110.0
76 TraesCS5A01G114000 chr2D 100.000 28 0 0 5199 5226 522132506 522132479 1.500000e-02 52.8
77 TraesCS5A01G114000 chr4D 82.069 290 40 4 8120 8399 430790800 430790513 3.930000e-58 237.0
78 TraesCS5A01G114000 chr4D 89.610 77 6 2 7682 7758 437027041 437026967 6.960000e-16 97.1
79 TraesCS5A01G114000 chr4A 83.843 229 15 11 8128 8345 601362887 601363104 1.860000e-46 198.0
80 TraesCS5A01G114000 chr4A 87.000 100 6 6 7660 7757 729053784 729053690 1.160000e-18 106.0
81 TraesCS5A01G114000 chr4A 87.368 95 6 6 7664 7758 37306852 37306940 4.160000e-18 104.0
82 TraesCS5A01G114000 chr4A 78.065 155 23 10 5056 5205 552852240 552852092 4.190000e-13 87.9
83 TraesCS5A01G114000 chrUn 90.210 143 12 2 8244 8386 339593826 339593966 1.440000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G114000 chr5A 227706049 227714474 8425 False 3794.200000 12264 100.000000 1 8426 4 chr5A.!!$F3 8425
1 TraesCS5A01G114000 chr5D 198951208 198958580 7372 False 1606.714286 5223 94.895714 553 8129 7 chr5D.!!$F2 7576
2 TraesCS5A01G114000 chr5B 209644473 209651830 7357 True 1566.571429 5077 94.890143 722 8129 7 chr5B.!!$R8 7407
3 TraesCS5A01G114000 chr1D 62430880 62431434 554 False 811.000000 811 93.357000 3 547 1 chr1D.!!$F1 544
4 TraesCS5A01G114000 chr1D 393432899 393433426 527 False 693.000000 693 90.335000 3 536 1 chr1D.!!$F2 533
5 TraesCS5A01G114000 chr2B 418670503 418671019 516 True 281.000000 281 78.072000 4736 5219 1 chr2B.!!$R1 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.608130 TGACGCTCCATTGTAGTGCT 59.392 50.000 0.00 0.00 0.00 4.40 F
1639 1659 0.385390 CCGGAGCATTAACAATGGGC 59.615 55.000 0.00 0.00 39.31 5.36 F
3027 3047 1.153369 GTTAGCTCATGGGCGCTCA 60.153 57.895 14.96 14.96 37.68 4.26 F
3760 3780 0.108041 TTAAAGGCGTCCCTAAGGCG 60.108 55.000 0.00 0.00 41.90 5.52 F
4596 4773 0.108233 CGGCCCCAAAATGGACATTG 60.108 55.000 0.00 0.00 40.96 2.82 F
5281 5770 0.878961 AAACGGACAAGCGGACTGAC 60.879 55.000 0.00 0.00 0.00 3.51 F
6461 7192 1.052287 CAAACAACGCAAAGATCGCC 58.948 50.000 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2092 1.604604 GCTGTCCTTGGCAAGTACAA 58.395 50.000 23.28 10.05 26.31 2.41 R
3630 3650 0.247185 TAAGAACTACGGGGCCAACG 59.753 55.000 16.38 16.38 37.36 4.10 R
4030 4050 0.318955 GCCAAGATGTTGTGGTGCAC 60.319 55.000 8.80 8.80 37.23 4.57 R
5261 5481 0.179067 TCAGTCCGCTTGTCCGTTTT 60.179 50.000 0.00 0.00 0.00 2.43 R
6456 7187 0.320771 ACAGTCTTTGCTTCGGCGAT 60.321 50.000 11.76 0.00 45.37 4.58 R
6964 7702 2.290367 TGCATTGTGTCAGCAGTTGTAC 59.710 45.455 0.00 0.00 33.75 2.90 R
8405 9154 0.691413 AAAAAGTTGGGGCGGGGAAA 60.691 50.000 0.00 0.00 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.070576 GGCGGCCCAAAGATGCTT 61.071 61.111 8.12 0.00 0.00 3.91
47 48 2.165301 GCTTCGTTGTAGCGCCGAT 61.165 57.895 2.29 0.00 0.00 4.18
85 86 0.608130 TGACGCTCCATTGTAGTGCT 59.392 50.000 0.00 0.00 0.00 4.40
89 90 1.672737 CGCTCCATTGTAGTGCTGACA 60.673 52.381 0.00 0.00 0.00 3.58
112 113 1.002257 TCCATTGCAGTGCCGACAT 60.002 52.632 13.72 0.00 0.00 3.06
144 153 2.888447 GCTGGCCCAGTGACACTCT 61.888 63.158 13.35 0.00 33.43 3.24
222 231 3.296836 AACTGGCGCATGCAGCAA 61.297 55.556 27.23 19.52 46.13 3.91
308 317 1.002134 AGCGGCAACCTTGTAGCAT 60.002 52.632 1.45 0.00 35.98 3.79
421 434 4.334203 AGTCAAATACAAAGACGCACAACA 59.666 37.500 0.00 0.00 37.36 3.33
464 477 3.065233 GCACTGACACAACAAACTGATCA 59.935 43.478 0.00 0.00 0.00 2.92
471 484 6.262944 TGACACAACAAACTGATCAGCTAATT 59.737 34.615 22.83 9.56 0.00 1.40
536 549 7.285401 AGTCGGTAGATTATAAACGTTTCCCTA 59.715 37.037 18.42 9.66 0.00 3.53
537 550 8.084684 GTCGGTAGATTATAAACGTTTCCCTAT 58.915 37.037 18.42 8.03 0.00 2.57
539 552 9.565213 CGGTAGATTATAAACGTTTCCCTATAG 57.435 37.037 18.42 7.32 0.00 1.31
589 602 4.637977 GGAAGACAGGGATCAAAGTGAATC 59.362 45.833 0.00 0.00 0.00 2.52
602 615 1.737793 AGTGAATCCCGCGACAAATTC 59.262 47.619 8.23 11.30 0.00 2.17
634 647 7.314393 CCTAGGCGAATATTTCTCTACCTTAC 58.686 42.308 0.00 0.00 0.00 2.34
724 737 2.358267 GACGTGCACTGCCTACTAGTAT 59.642 50.000 16.19 0.00 0.00 2.12
837 850 1.212490 CCGCCGCACAAATCAACAT 59.788 52.632 0.00 0.00 0.00 2.71
964 977 1.026718 CGAAATCCGCTCAGCCCTTT 61.027 55.000 0.00 0.00 0.00 3.11
971 984 1.451028 GCTCAGCCCTTTCGCATCT 60.451 57.895 0.00 0.00 0.00 2.90
974 987 1.410517 CTCAGCCCTTTCGCATCTCTA 59.589 52.381 0.00 0.00 0.00 2.43
998 1012 2.485582 CCGCACTCGAGTCGACAT 59.514 61.111 27.54 2.45 38.10 3.06
1085 1099 3.858868 GAGGTGGCTGCGACGTCAA 62.859 63.158 25.51 1.73 29.87 3.18
1637 1657 2.097466 GTGACCGGAGCATTAACAATGG 59.903 50.000 9.46 0.00 39.31 3.16
1639 1659 0.385390 CCGGAGCATTAACAATGGGC 59.615 55.000 0.00 0.00 39.31 5.36
1656 1676 1.623834 GGGCATGGGTTTTATGGGGAA 60.624 52.381 0.00 0.00 0.00 3.97
1689 1709 1.204941 CTCAGAGTTAGTTCCACGGGG 59.795 57.143 0.00 0.00 0.00 5.73
1700 1720 2.033602 CACGGGGTTGGGAAGGAC 59.966 66.667 0.00 0.00 0.00 3.85
1895 1915 1.418637 TGACACCAGGTTTCACTACCC 59.581 52.381 4.13 0.00 39.08 3.69
2131 2151 3.026694 GGAGGTTATGAGCCAAGCAATT 58.973 45.455 0.00 0.00 0.00 2.32
2146 2166 1.601162 GCAATTGCTACGCCATGGATG 60.601 52.381 23.21 9.63 38.21 3.51
2154 2174 3.803715 GCTACGCCATGGATGACATAAGT 60.804 47.826 18.40 3.01 37.84 2.24
2325 2345 6.069264 TGGAATATGATGCAGATGGATATGGT 60.069 38.462 0.00 0.00 0.00 3.55
2439 2459 3.244215 TGGTCTCATCACCTTTGACAGAC 60.244 47.826 6.90 6.90 40.96 3.51
2838 2858 6.084060 TGAGATTGACCCATATGACCTATCA 58.916 40.000 3.65 0.00 39.83 2.15
2872 2892 6.951256 TGTCAAGAAGAAGTTGTGATATCG 57.049 37.500 0.00 0.00 0.00 2.92
2898 2918 2.926200 CGATGAAGATGGATATGACGCC 59.074 50.000 0.00 0.00 0.00 5.68
2921 2941 6.405176 GCCAGATATGATATGTCATCGAGTCA 60.405 42.308 8.38 0.00 43.87 3.41
2938 2958 7.818493 TCGAGTCATAATGTTTTCTCAAGAG 57.182 36.000 0.00 0.00 0.00 2.85
3027 3047 1.153369 GTTAGCTCATGGGCGCTCA 60.153 57.895 14.96 14.96 37.68 4.26
3153 3173 3.804873 GTGCGAAAAAGAGACTGAGAGTT 59.195 43.478 0.00 0.00 0.00 3.01
3630 3650 4.850347 AGCATACCTTGTCGTAGATACC 57.150 45.455 0.00 0.00 40.67 2.73
3729 3749 2.153401 CCCACCCTCACCAACCTCA 61.153 63.158 0.00 0.00 0.00 3.86
3734 3754 1.679898 CCTCACCAACCTCAGGACC 59.320 63.158 0.00 0.00 0.00 4.46
3735 3755 0.838122 CCTCACCAACCTCAGGACCT 60.838 60.000 0.00 0.00 0.00 3.85
3736 3756 1.552486 CCTCACCAACCTCAGGACCTA 60.552 57.143 0.00 0.00 0.00 3.08
3737 3757 2.472029 CTCACCAACCTCAGGACCTAT 58.528 52.381 0.00 0.00 0.00 2.57
3738 3758 2.169352 CTCACCAACCTCAGGACCTATG 59.831 54.545 0.00 0.00 0.00 2.23
3739 3759 1.909302 CACCAACCTCAGGACCTATGT 59.091 52.381 0.00 0.00 0.00 2.29
3740 3760 2.305927 CACCAACCTCAGGACCTATGTT 59.694 50.000 0.00 0.00 0.00 2.71
3741 3761 2.986728 ACCAACCTCAGGACCTATGTTT 59.013 45.455 0.00 0.00 0.00 2.83
3742 3762 3.397955 ACCAACCTCAGGACCTATGTTTT 59.602 43.478 0.00 0.00 0.00 2.43
3743 3763 4.600111 ACCAACCTCAGGACCTATGTTTTA 59.400 41.667 0.00 0.00 0.00 1.52
3744 3764 5.073965 ACCAACCTCAGGACCTATGTTTTAA 59.926 40.000 0.00 0.00 0.00 1.52
3745 3765 6.007703 CCAACCTCAGGACCTATGTTTTAAA 58.992 40.000 0.00 0.00 0.00 1.52
3746 3766 6.151144 CCAACCTCAGGACCTATGTTTTAAAG 59.849 42.308 0.00 0.00 0.00 1.85
3747 3767 5.816682 ACCTCAGGACCTATGTTTTAAAGG 58.183 41.667 0.00 0.00 36.42 3.11
3748 3768 4.640647 CCTCAGGACCTATGTTTTAAAGGC 59.359 45.833 0.00 0.00 33.42 4.35
3749 3769 4.258543 TCAGGACCTATGTTTTAAAGGCG 58.741 43.478 0.00 0.00 33.42 5.52
3750 3770 4.007659 CAGGACCTATGTTTTAAAGGCGT 58.992 43.478 0.00 0.00 33.42 5.68
3751 3771 4.094442 CAGGACCTATGTTTTAAAGGCGTC 59.906 45.833 0.00 0.00 33.42 5.19
3752 3772 3.376234 GGACCTATGTTTTAAAGGCGTCC 59.624 47.826 0.00 0.00 33.42 4.79
3753 3773 3.349927 ACCTATGTTTTAAAGGCGTCCC 58.650 45.455 0.00 0.00 33.42 4.46
3754 3774 3.009805 ACCTATGTTTTAAAGGCGTCCCT 59.990 43.478 0.00 0.00 45.77 4.20
3755 3775 4.225717 ACCTATGTTTTAAAGGCGTCCCTA 59.774 41.667 0.00 0.00 41.90 3.53
3756 3776 5.187687 CCTATGTTTTAAAGGCGTCCCTAA 58.812 41.667 0.00 0.00 41.90 2.69
3757 3777 5.296035 CCTATGTTTTAAAGGCGTCCCTAAG 59.704 44.000 0.00 0.00 41.90 2.18
3758 3778 3.414269 TGTTTTAAAGGCGTCCCTAAGG 58.586 45.455 0.00 0.00 41.90 2.69
3759 3779 2.118313 TTTAAAGGCGTCCCTAAGGC 57.882 50.000 0.00 0.00 41.90 4.35
3760 3780 0.108041 TTAAAGGCGTCCCTAAGGCG 60.108 55.000 0.00 0.00 41.90 5.52
3761 3781 0.971959 TAAAGGCGTCCCTAAGGCGA 60.972 55.000 0.00 0.00 41.90 5.54
3762 3782 2.517484 AAAGGCGTCCCTAAGGCGAC 62.517 60.000 0.00 0.00 41.90 5.19
3798 3818 4.394712 CGTCAAAGCGCTCCCCCT 62.395 66.667 12.06 0.00 0.00 4.79
3799 3819 2.436824 GTCAAAGCGCTCCCCCTC 60.437 66.667 12.06 0.00 0.00 4.30
3800 3820 3.717294 TCAAAGCGCTCCCCCTCC 61.717 66.667 12.06 0.00 0.00 4.30
3807 3827 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
3817 3837 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
3818 3838 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
3819 3839 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
3820 3840 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
3821 3841 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
3822 3842 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
3823 3843 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
3824 3844 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
3825 3845 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
3826 3846 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
3844 3864 3.195698 GCCTAGGCGTCCAAAGCG 61.196 66.667 20.16 0.00 35.00 4.68
3852 3872 4.770874 GTCCAAAGCGCCCGCCTA 62.771 66.667 2.29 0.00 43.17 3.93
3853 3873 4.467084 TCCAAAGCGCCCGCCTAG 62.467 66.667 2.29 0.00 43.17 3.02
3895 3915 4.817909 CCCCCTCCCTAAGGCGGT 62.818 72.222 0.00 0.00 44.71 5.68
3896 3916 2.284493 CCCCTCCCTAAGGCGGTA 59.716 66.667 0.00 0.00 44.71 4.02
3897 3917 1.383525 CCCCTCCCTAAGGCGGTAA 60.384 63.158 0.00 0.00 44.71 2.85
3898 3918 1.408453 CCCCTCCCTAAGGCGGTAAG 61.408 65.000 0.00 0.00 44.71 2.34
3899 3919 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
3918 3938 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
3919 3939 2.437626 GCGTCGCCTTAAAAACATAGC 58.562 47.619 5.75 0.00 0.00 2.97
3920 3940 2.095372 GCGTCGCCTTAAAAACATAGCT 59.905 45.455 5.75 0.00 0.00 3.32
3921 3941 3.784525 GCGTCGCCTTAAAAACATAGCTC 60.785 47.826 5.75 0.00 0.00 4.09
3922 3942 3.369756 CGTCGCCTTAAAAACATAGCTCA 59.630 43.478 0.00 0.00 0.00 4.26
3923 3943 4.492570 CGTCGCCTTAAAAACATAGCTCAG 60.493 45.833 0.00 0.00 0.00 3.35
3924 3944 3.938963 TCGCCTTAAAAACATAGCTCAGG 59.061 43.478 0.00 0.00 0.00 3.86
3925 3945 3.938963 CGCCTTAAAAACATAGCTCAGGA 59.061 43.478 0.00 0.00 0.00 3.86
3926 3946 4.201822 CGCCTTAAAAACATAGCTCAGGAC 60.202 45.833 0.00 0.00 0.00 3.85
4157 4177 3.255888 CCATCTGATGCAAAGGATGATGG 59.744 47.826 20.30 17.63 41.95 3.51
4179 4199 6.640518 TGGTGTAGCTTCTTTGGAGTAATAG 58.359 40.000 0.00 0.00 0.00 1.73
4272 4292 2.288825 TGAGCTAGTTCGTGGTTGGAAG 60.289 50.000 1.89 0.00 0.00 3.46
4295 4315 3.942829 TCTGGTTGCTAATGTCTTGGAG 58.057 45.455 0.00 0.00 0.00 3.86
4440 4460 2.354259 CTCTACAAGGCAAGCTGAAGG 58.646 52.381 0.00 0.00 0.00 3.46
4500 4520 4.616835 GCTGGCTGAGTTTTTGAAGTATGG 60.617 45.833 0.00 0.00 0.00 2.74
4502 4522 3.255642 GGCTGAGTTTTTGAAGTATGGCA 59.744 43.478 0.00 0.00 0.00 4.92
4503 4523 4.229876 GCTGAGTTTTTGAAGTATGGCAC 58.770 43.478 0.00 0.00 0.00 5.01
4594 4771 1.685421 CCGGCCCCAAAATGGACAT 60.685 57.895 0.00 0.00 40.96 3.06
4596 4773 0.108233 CGGCCCCAAAATGGACATTG 60.108 55.000 0.00 0.00 40.96 2.82
4604 4781 6.237154 CCCCAAAATGGACATTGTATTTGTT 58.763 36.000 0.00 0.00 40.96 2.83
4605 4782 6.714356 CCCCAAAATGGACATTGTATTTGTTT 59.286 34.615 0.00 0.47 40.96 2.83
4635 4812 4.875713 GGACCATTCCGCGGGCAT 62.876 66.667 27.83 15.37 30.57 4.40
4780 4962 6.730447 TCCATCCCTTGAAATTGAGAACATA 58.270 36.000 0.00 0.00 0.00 2.29
4848 5034 3.136443 TCATCCGCATAATCCTCCTTGTT 59.864 43.478 0.00 0.00 0.00 2.83
4930 5119 3.076032 AGGAGGAACAAATTTAGCAGGGT 59.924 43.478 0.00 0.00 0.00 4.34
4982 5171 3.467226 CGTGGGGCGGATGGTACT 61.467 66.667 0.00 0.00 36.85 2.73
5075 5294 4.344865 GTCCGGGAAGGCTTGGCA 62.345 66.667 3.46 0.00 40.77 4.92
5154 5373 2.959421 AAGAGGGAAGGATGGAGACT 57.041 50.000 0.00 0.00 0.00 3.24
5163 5382 1.381327 GATGGAGACTCGGGGTCCA 60.381 63.158 10.82 10.82 45.54 4.02
5208 5428 2.202570 CGGAGTTCTACGTGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
5209 5429 2.508663 GGAGTTCTACGTGGCGGC 60.509 66.667 0.00 0.00 0.00 6.53
5227 5447 4.754667 GGTCCGAACTCCCGCACC 62.755 72.222 0.00 0.00 32.80 5.01
5228 5448 4.754667 GTCCGAACTCCCGCACCC 62.755 72.222 0.00 0.00 0.00 4.61
5252 5472 3.875865 CCCCCTAGTTTTCTTCCGG 57.124 57.895 0.00 0.00 0.00 5.14
5253 5473 0.989602 CCCCCTAGTTTTCTTCCGGT 59.010 55.000 0.00 0.00 0.00 5.28
5254 5474 1.353358 CCCCCTAGTTTTCTTCCGGTT 59.647 52.381 0.00 0.00 0.00 4.44
5255 5475 2.224942 CCCCCTAGTTTTCTTCCGGTTT 60.225 50.000 0.00 0.00 0.00 3.27
5256 5476 2.817844 CCCCTAGTTTTCTTCCGGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
5257 5477 3.497227 CCCCTAGTTTTCTTCCGGTTTGA 60.497 47.826 0.00 0.00 0.00 2.69
5258 5478 3.751698 CCCTAGTTTTCTTCCGGTTTGAG 59.248 47.826 0.00 0.00 0.00 3.02
5259 5479 3.751698 CCTAGTTTTCTTCCGGTTTGAGG 59.248 47.826 0.00 0.00 0.00 3.86
5260 5480 2.583143 AGTTTTCTTCCGGTTTGAGGG 58.417 47.619 0.00 0.00 0.00 4.30
5261 5481 2.173996 AGTTTTCTTCCGGTTTGAGGGA 59.826 45.455 0.00 0.00 0.00 4.20
5262 5482 2.953648 GTTTTCTTCCGGTTTGAGGGAA 59.046 45.455 0.00 0.00 39.92 3.97
5263 5483 3.300239 TTTCTTCCGGTTTGAGGGAAA 57.700 42.857 0.00 0.76 41.52 3.13
5264 5484 3.300239 TTCTTCCGGTTTGAGGGAAAA 57.700 42.857 0.00 0.00 41.52 2.29
5265 5485 2.578786 TCTTCCGGTTTGAGGGAAAAC 58.421 47.619 0.00 0.00 41.52 2.43
5281 5770 0.878961 AAACGGACAAGCGGACTGAC 60.879 55.000 0.00 0.00 0.00 3.51
5313 5842 2.821969 GTTGCATGTGATTTGAGGGTCT 59.178 45.455 0.00 0.00 0.00 3.85
5326 5855 1.556911 GAGGGTCTGCTTTGGAGATGA 59.443 52.381 0.00 0.00 0.00 2.92
5339 5868 2.906389 TGGAGATGACCTTTAGTGTGCT 59.094 45.455 0.00 0.00 0.00 4.40
5340 5869 3.265791 GGAGATGACCTTTAGTGTGCTG 58.734 50.000 0.00 0.00 0.00 4.41
5341 5870 2.675348 GAGATGACCTTTAGTGTGCTGC 59.325 50.000 0.00 0.00 0.00 5.25
5360 5889 3.107601 TGCTAGAGGCTGTAGGTTGAAT 58.892 45.455 19.11 0.00 42.39 2.57
5545 6089 7.772166 TCTTCAGTATGGATAGTGTGTACTTG 58.228 38.462 0.00 0.00 35.91 3.16
5548 6092 4.714802 AGTATGGATAGTGTGTACTTGGCA 59.285 41.667 0.00 0.00 38.36 4.92
5549 6093 4.778213 ATGGATAGTGTGTACTTGGCAT 57.222 40.909 0.00 0.00 38.36 4.40
5588 6132 7.458409 AGCAACTCACTTTGACATTATTGAT 57.542 32.000 0.00 0.00 0.00 2.57
5590 6134 7.811236 AGCAACTCACTTTGACATTATTGATTG 59.189 33.333 0.00 0.00 0.00 2.67
5829 6373 1.270550 CCAGATGGCGTTTTGCTTTCT 59.729 47.619 0.00 0.00 45.43 2.52
5929 6473 6.035975 ACAGTTGAGCATTTTGTTTACTTTGC 59.964 34.615 0.00 0.00 0.00 3.68
5933 6477 3.127589 GCATTTTGTTTACTTTGCGGGT 58.872 40.909 0.00 0.00 0.00 5.28
5955 6499 7.417612 GGGTTAATGTAGCATAGTTTCATGTG 58.582 38.462 0.00 0.00 0.00 3.21
5957 6501 8.338259 GGTTAATGTAGCATAGTTTCATGTGAG 58.662 37.037 0.00 0.00 0.00 3.51
6078 6623 9.750125 GTATGTCCTTTGAAATTGTTTCTTCTT 57.250 29.630 4.32 0.00 40.32 2.52
6449 7180 5.207768 CACAACAGCTCTATCACAAACAAC 58.792 41.667 0.00 0.00 0.00 3.32
6456 7187 4.319477 GCTCTATCACAAACAACGCAAAGA 60.319 41.667 0.00 0.00 0.00 2.52
6461 7192 1.052287 CAAACAACGCAAAGATCGCC 58.948 50.000 0.00 0.00 0.00 5.54
6472 7203 1.079503 AAGATCGCCGAAGCAAAGAC 58.920 50.000 0.00 0.00 39.83 3.01
6482 7213 3.003689 CCGAAGCAAAGACTGTGACAATT 59.996 43.478 0.00 0.00 0.00 2.32
6515 7246 3.740115 AGGTGTACTTGCAGGTTAGTTG 58.260 45.455 6.84 0.00 0.00 3.16
6964 7702 5.006746 GGCAAACTAACGGATCTACTGATTG 59.993 44.000 0.00 0.00 32.19 2.67
6972 7710 5.651530 ACGGATCTACTGATTGTACAACTG 58.348 41.667 11.22 11.07 32.19 3.16
7112 7859 4.082625 TGCATGTGACAAGGCAAAGATAAG 60.083 41.667 12.00 0.00 32.54 1.73
7251 7998 7.296628 GGAAGAACTCCATCAGATACTATGT 57.703 40.000 0.00 0.00 44.67 2.29
7365 8112 4.264460 AGAGACAAAGAAGAGATGCGTT 57.736 40.909 0.00 0.00 0.00 4.84
7420 8167 0.254462 TGCCACACTGAACTTGGACA 59.746 50.000 0.00 0.00 31.39 4.02
7444 8191 5.236911 ACGTGAAGCGACCTAACAAATTTAA 59.763 36.000 0.00 0.00 44.77 1.52
7550 8297 6.757010 GCTGAAACCTGAAGAATATTCTACGA 59.243 38.462 18.23 4.86 36.28 3.43
7588 8335 9.028284 ACCTTCATGTCATTATCAAATCTTGTT 57.972 29.630 0.00 0.00 0.00 2.83
7618 8365 9.401058 CTTTATGTTCCAGGTTCTTCATCTAAT 57.599 33.333 0.00 0.00 0.00 1.73
7740 8487 8.295288 AGATATTTCAAATACGGACTACCTACG 58.705 37.037 0.00 0.00 0.00 3.51
7778 8525 7.596248 GTGAATATGGCCATGTTTGAATCATAC 59.404 37.037 29.04 12.37 0.00 2.39
7788 8535 8.900781 CCATGTTTGAATCATACTGAAATCTCT 58.099 33.333 5.51 0.00 0.00 3.10
7799 8546 9.574458 TCATACTGAAATCTCTAAAAAGACTCG 57.426 33.333 0.00 0.00 0.00 4.18
7844 8591 3.317150 TGTCTCTTGCGTGTTCATACTG 58.683 45.455 0.00 0.00 0.00 2.74
7880 8628 6.371809 TTGAATCAACTTGTAGCGAACTTT 57.628 33.333 0.00 0.00 0.00 2.66
7883 8631 6.204688 TGAATCAACTTGTAGCGAACTTTGAT 59.795 34.615 0.00 0.00 35.79 2.57
7934 8683 2.158295 GCTTAGAGGGGATAGGGAGTCA 60.158 54.545 0.00 0.00 0.00 3.41
7975 8724 5.997746 CACTCAACCTGAACTTTATCTTGGA 59.002 40.000 0.00 0.00 0.00 3.53
7976 8725 6.148480 CACTCAACCTGAACTTTATCTTGGAG 59.852 42.308 0.00 0.00 0.00 3.86
7977 8726 6.183361 ACTCAACCTGAACTTTATCTTGGAGT 60.183 38.462 0.00 0.00 0.00 3.85
7978 8727 7.016268 ACTCAACCTGAACTTTATCTTGGAGTA 59.984 37.037 0.00 0.00 0.00 2.59
7979 8728 7.918076 TCAACCTGAACTTTATCTTGGAGTAT 58.082 34.615 0.00 0.00 0.00 2.12
7980 8729 9.042450 TCAACCTGAACTTTATCTTGGAGTATA 57.958 33.333 0.00 0.00 0.00 1.47
7981 8730 9.667107 CAACCTGAACTTTATCTTGGAGTATAA 57.333 33.333 0.00 0.00 0.00 0.98
7982 8731 9.892130 AACCTGAACTTTATCTTGGAGTATAAG 57.108 33.333 0.00 0.00 0.00 1.73
7983 8732 8.487028 ACCTGAACTTTATCTTGGAGTATAAGG 58.513 37.037 0.00 0.00 0.00 2.69
7984 8733 8.487028 CCTGAACTTTATCTTGGAGTATAAGGT 58.513 37.037 0.00 0.00 31.46 3.50
7985 8734 9.319143 CTGAACTTTATCTTGGAGTATAAGGTG 57.681 37.037 0.00 0.00 30.85 4.00
7986 8735 7.769044 TGAACTTTATCTTGGAGTATAAGGTGC 59.231 37.037 0.00 0.00 30.85 5.01
7987 8736 6.281405 ACTTTATCTTGGAGTATAAGGTGCG 58.719 40.000 0.00 0.00 29.70 5.34
7988 8737 5.864418 TTATCTTGGAGTATAAGGTGCGT 57.136 39.130 0.00 0.00 0.00 5.24
7989 8738 6.964807 TTATCTTGGAGTATAAGGTGCGTA 57.035 37.500 0.00 0.00 0.00 4.42
7990 8739 4.644103 TCTTGGAGTATAAGGTGCGTAC 57.356 45.455 0.00 0.00 0.00 3.67
7991 8740 3.065786 TCTTGGAGTATAAGGTGCGTACG 59.934 47.826 11.84 11.84 0.00 3.67
7992 8741 2.368439 TGGAGTATAAGGTGCGTACGT 58.632 47.619 17.90 0.00 0.00 3.57
7993 8742 3.540617 TGGAGTATAAGGTGCGTACGTA 58.459 45.455 17.90 10.06 0.00 3.57
7994 8743 4.136796 TGGAGTATAAGGTGCGTACGTAT 58.863 43.478 17.90 8.70 0.00 3.06
7995 8744 5.304778 TGGAGTATAAGGTGCGTACGTATA 58.695 41.667 17.90 7.70 0.00 1.47
7996 8745 5.409520 TGGAGTATAAGGTGCGTACGTATAG 59.590 44.000 17.90 0.00 0.00 1.31
7997 8746 5.288543 AGTATAAGGTGCGTACGTATAGC 57.711 43.478 17.90 16.05 0.00 2.97
7998 8747 4.999950 AGTATAAGGTGCGTACGTATAGCT 59.000 41.667 17.90 14.83 0.00 3.32
7999 8748 2.770699 AAGGTGCGTACGTATAGCTC 57.229 50.000 17.90 18.08 0.00 4.09
8000 8749 1.671979 AGGTGCGTACGTATAGCTCA 58.328 50.000 17.90 0.92 0.00 4.26
8001 8750 2.019249 AGGTGCGTACGTATAGCTCAA 58.981 47.619 17.90 4.61 0.00 3.02
8002 8751 2.114825 GGTGCGTACGTATAGCTCAAC 58.885 52.381 17.90 13.60 0.00 3.18
8003 8752 2.114825 GTGCGTACGTATAGCTCAACC 58.885 52.381 17.90 0.00 0.00 3.77
8004 8753 2.019249 TGCGTACGTATAGCTCAACCT 58.981 47.619 17.90 0.00 0.00 3.50
8005 8754 2.223409 TGCGTACGTATAGCTCAACCTG 60.223 50.000 17.90 0.00 0.00 4.00
8006 8755 2.032550 GCGTACGTATAGCTCAACCTGA 59.967 50.000 17.90 0.00 0.00 3.86
8007 8756 3.488047 GCGTACGTATAGCTCAACCTGAA 60.488 47.826 17.90 0.00 0.00 3.02
8008 8757 4.033684 CGTACGTATAGCTCAACCTGAAC 58.966 47.826 7.22 0.00 0.00 3.18
8009 8758 4.201891 CGTACGTATAGCTCAACCTGAACT 60.202 45.833 7.22 0.00 0.00 3.01
8010 8759 4.803098 ACGTATAGCTCAACCTGAACTT 57.197 40.909 0.00 0.00 0.00 2.66
8011 8760 5.148651 ACGTATAGCTCAACCTGAACTTT 57.851 39.130 0.00 0.00 0.00 2.66
8012 8761 6.276832 ACGTATAGCTCAACCTGAACTTTA 57.723 37.500 0.00 0.00 0.00 1.85
8013 8762 6.875076 ACGTATAGCTCAACCTGAACTTTAT 58.125 36.000 0.00 0.00 0.00 1.40
8014 8763 6.979238 ACGTATAGCTCAACCTGAACTTTATC 59.021 38.462 0.00 0.00 0.00 1.75
8015 8764 7.147880 ACGTATAGCTCAACCTGAACTTTATCT 60.148 37.037 0.00 0.00 0.00 1.98
8016 8765 7.707035 CGTATAGCTCAACCTGAACTTTATCTT 59.293 37.037 0.00 0.00 0.00 2.40
8017 8766 7.856145 ATAGCTCAACCTGAACTTTATCTTG 57.144 36.000 0.00 0.00 0.00 3.02
8018 8767 5.006386 AGCTCAACCTGAACTTTATCTTGG 58.994 41.667 0.00 0.00 0.00 3.61
8090 8839 1.136305 GCACTGCTCGGTTATACCTGA 59.864 52.381 0.00 0.00 35.66 3.86
8093 8842 3.804325 CACTGCTCGGTTATACCTGAATG 59.196 47.826 0.00 0.00 35.66 2.67
8098 8847 5.128171 TGCTCGGTTATACCTGAATGTAAGT 59.872 40.000 0.00 0.00 35.66 2.24
8099 8848 6.047231 GCTCGGTTATACCTGAATGTAAGTT 58.953 40.000 0.00 0.00 35.66 2.66
8134 8883 9.482175 AAGAACTGAGATAGTATTGTACTTCCT 57.518 33.333 0.00 0.00 39.18 3.36
8135 8884 9.127277 AGAACTGAGATAGTATTGTACTTCCTC 57.873 37.037 0.00 3.99 39.18 3.71
8136 8885 7.826918 ACTGAGATAGTATTGTACTTCCTCC 57.173 40.000 0.00 0.00 40.14 4.30
8137 8886 6.487331 ACTGAGATAGTATTGTACTTCCTCCG 59.513 42.308 0.00 9.75 40.14 4.63
8138 8887 6.363065 TGAGATAGTATTGTACTTCCTCCGT 58.637 40.000 0.00 0.00 40.14 4.69
8139 8888 6.832384 TGAGATAGTATTGTACTTCCTCCGTT 59.168 38.462 0.00 0.00 40.14 4.44
8140 8889 7.013083 TGAGATAGTATTGTACTTCCTCCGTTC 59.987 40.741 0.00 0.00 40.14 3.95
8141 8890 4.732672 AGTATTGTACTTCCTCCGTTCC 57.267 45.455 0.00 0.00 34.86 3.62
8142 8891 4.351127 AGTATTGTACTTCCTCCGTTCCT 58.649 43.478 0.00 0.00 34.86 3.36
8143 8892 5.513233 AGTATTGTACTTCCTCCGTTCCTA 58.487 41.667 0.00 0.00 34.86 2.94
8144 8893 5.954150 AGTATTGTACTTCCTCCGTTCCTAA 59.046 40.000 0.00 0.00 34.86 2.69
8145 8894 5.750352 ATTGTACTTCCTCCGTTCCTAAA 57.250 39.130 0.00 0.00 0.00 1.85
8146 8895 5.750352 TTGTACTTCCTCCGTTCCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
8147 8896 6.855763 TTGTACTTCCTCCGTTCCTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
8148 8897 6.212888 TGTACTTCCTCCGTTCCTAAATAC 57.787 41.667 0.00 0.00 0.00 1.89
8149 8898 5.716228 TGTACTTCCTCCGTTCCTAAATACA 59.284 40.000 0.00 0.00 0.00 2.29
8150 8899 5.750352 ACTTCCTCCGTTCCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
8151 8900 5.731591 ACTTCCTCCGTTCCTAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
8152 8901 5.247792 ACTTCCTCCGTTCCTAAATACAAGT 59.752 40.000 0.00 0.00 0.00 3.16
8153 8902 5.334724 TCCTCCGTTCCTAAATACAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
8154 8903 5.021458 TCCTCCGTTCCTAAATACAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
8155 8904 5.482878 TCCTCCGTTCCTAAATACAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
8156 8905 6.013984 TCCTCCGTTCCTAAATACAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
8157 8906 6.653740 CCTCCGTTCCTAAATACAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
8158 8907 7.174426 CCTCCGTTCCTAAATACAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
8159 8908 9.211485 CTCCGTTCCTAAATACAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
8160 8909 9.211485 TCCGTTCCTAAATACAAGTCTTTTTAG 57.789 33.333 7.75 7.75 33.47 1.85
8161 8910 9.211485 CCGTTCCTAAATACAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 34.90 2.10
8227 8976 7.617041 AGTGTAGATTCACTTATTTTGCTCC 57.383 36.000 0.00 0.00 44.92 4.70
8228 8977 6.313905 AGTGTAGATTCACTTATTTTGCTCCG 59.686 38.462 0.00 0.00 44.92 4.63
8229 8978 6.092259 GTGTAGATTCACTTATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
8230 8979 7.277098 GTGTAGATTCACTTATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
8231 8980 7.985184 TGTAGATTCACTTATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
8232 8981 7.251704 AGATTCACTTATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
8233 8982 6.823689 AGATTCACTTATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
8234 8983 7.985184 AGATTCACTTATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
8235 8984 7.534085 TTCACTTATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
8236 8985 6.636705 TCACTTATTTTGCTCCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
8237 8986 6.755141 TCACTTATTTTGCTCCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
8238 8987 6.533723 CACTTATTTTGCTCCGTATGTAGTCA 59.466 38.462 0.00 0.00 0.00 3.41
8239 8988 6.534079 ACTTATTTTGCTCCGTATGTAGTCAC 59.466 38.462 0.00 0.00 0.00 3.67
8240 8989 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
8241 8990 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
8242 8991 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
8243 8992 2.194271 GCTCCGTATGTAGTCACTTGC 58.806 52.381 0.00 0.00 0.00 4.01
8244 8993 2.159226 GCTCCGTATGTAGTCACTTGCT 60.159 50.000 0.00 0.00 0.00 3.91
8245 8994 3.439293 CTCCGTATGTAGTCACTTGCTG 58.561 50.000 0.00 0.00 0.00 4.41
8246 8995 2.165641 TCCGTATGTAGTCACTTGCTGG 59.834 50.000 0.00 0.00 0.00 4.85
8247 8996 2.165641 CCGTATGTAGTCACTTGCTGGA 59.834 50.000 0.00 0.00 0.00 3.86
8248 8997 3.368013 CCGTATGTAGTCACTTGCTGGAA 60.368 47.826 0.00 0.00 0.00 3.53
8249 8998 4.433615 CGTATGTAGTCACTTGCTGGAAT 58.566 43.478 0.00 0.00 0.00 3.01
8250 8999 4.504461 CGTATGTAGTCACTTGCTGGAATC 59.496 45.833 0.00 0.00 0.00 2.52
8251 9000 4.558226 ATGTAGTCACTTGCTGGAATCA 57.442 40.909 0.00 0.00 0.00 2.57
8252 9001 4.350368 TGTAGTCACTTGCTGGAATCAA 57.650 40.909 0.00 0.00 0.00 2.57
8253 9002 4.713553 TGTAGTCACTTGCTGGAATCAAA 58.286 39.130 0.00 0.00 0.00 2.69
8254 9003 4.756642 TGTAGTCACTTGCTGGAATCAAAG 59.243 41.667 0.00 0.00 0.00 2.77
8255 9004 4.090761 AGTCACTTGCTGGAATCAAAGA 57.909 40.909 0.00 0.00 0.00 2.52
8256 9005 3.817647 AGTCACTTGCTGGAATCAAAGAC 59.182 43.478 0.00 0.00 32.95 3.01
8257 9006 3.817647 GTCACTTGCTGGAATCAAAGACT 59.182 43.478 0.00 0.00 31.49 3.24
8258 9007 4.276926 GTCACTTGCTGGAATCAAAGACTT 59.723 41.667 0.00 0.00 31.49 3.01
8259 9008 5.470098 GTCACTTGCTGGAATCAAAGACTTA 59.530 40.000 0.00 0.00 31.49 2.24
8260 9009 6.150140 GTCACTTGCTGGAATCAAAGACTTAT 59.850 38.462 0.00 0.00 31.49 1.73
8261 9010 7.334421 GTCACTTGCTGGAATCAAAGACTTATA 59.666 37.037 0.00 0.00 31.49 0.98
8262 9011 7.334421 TCACTTGCTGGAATCAAAGACTTATAC 59.666 37.037 0.00 0.00 0.00 1.47
8263 9012 7.335422 CACTTGCTGGAATCAAAGACTTATACT 59.665 37.037 0.00 0.00 0.00 2.12
8264 9013 7.885399 ACTTGCTGGAATCAAAGACTTATACTT 59.115 33.333 0.00 0.00 0.00 2.24
8265 9014 7.849804 TGCTGGAATCAAAGACTTATACTTC 57.150 36.000 0.00 0.00 0.00 3.01
8266 9015 6.823689 TGCTGGAATCAAAGACTTATACTTCC 59.176 38.462 9.93 9.93 33.20 3.46
8267 9016 7.051000 GCTGGAATCAAAGACTTATACTTCCT 58.949 38.462 14.70 0.00 33.64 3.36
8268 9017 7.554476 GCTGGAATCAAAGACTTATACTTCCTT 59.446 37.037 14.70 0.00 33.64 3.36
8269 9018 9.103861 CTGGAATCAAAGACTTATACTTCCTTC 57.896 37.037 14.70 0.00 33.64 3.46
8270 9019 7.764443 TGGAATCAAAGACTTATACTTCCTTCG 59.236 37.037 14.70 0.00 33.64 3.79
8271 9020 7.764901 GGAATCAAAGACTTATACTTCCTTCGT 59.235 37.037 9.71 0.00 0.00 3.85
8272 9021 8.705048 AATCAAAGACTTATACTTCCTTCGTC 57.295 34.615 0.00 0.00 0.00 4.20
8273 9022 6.628185 TCAAAGACTTATACTTCCTTCGTCC 58.372 40.000 0.00 0.00 0.00 4.79
8274 9023 4.897025 AGACTTATACTTCCTTCGTCCG 57.103 45.455 0.00 0.00 0.00 4.79
8275 9024 3.631227 AGACTTATACTTCCTTCGTCCGG 59.369 47.826 0.00 0.00 0.00 5.14
8276 9025 3.624777 ACTTATACTTCCTTCGTCCGGA 58.375 45.455 0.00 0.00 0.00 5.14
8277 9026 4.019174 ACTTATACTTCCTTCGTCCGGAA 58.981 43.478 5.23 0.00 38.18 4.30
8278 9027 4.463891 ACTTATACTTCCTTCGTCCGGAAA 59.536 41.667 5.23 0.00 39.86 3.13
8279 9028 5.128335 ACTTATACTTCCTTCGTCCGGAAAT 59.872 40.000 5.23 0.00 39.86 2.17
8280 9029 6.322201 ACTTATACTTCCTTCGTCCGGAAATA 59.678 38.462 5.23 0.00 39.86 1.40
8281 9030 3.242549 ACTTCCTTCGTCCGGAAATAC 57.757 47.619 5.23 0.00 39.86 1.89
8282 9031 2.830321 ACTTCCTTCGTCCGGAAATACT 59.170 45.455 5.23 0.00 39.86 2.12
8283 9032 3.260128 ACTTCCTTCGTCCGGAAATACTT 59.740 43.478 5.23 0.00 39.86 2.24
8284 9033 3.241067 TCCTTCGTCCGGAAATACTTG 57.759 47.619 5.23 0.00 33.34 3.16
8285 9034 2.564062 TCCTTCGTCCGGAAATACTTGT 59.436 45.455 5.23 0.00 33.34 3.16
8286 9035 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
8287 9036 3.581755 CTTCGTCCGGAAATACTTGTCA 58.418 45.455 5.23 0.00 33.34 3.58
8288 9037 3.880047 TCGTCCGGAAATACTTGTCAT 57.120 42.857 5.23 0.00 0.00 3.06
8289 9038 3.777478 TCGTCCGGAAATACTTGTCATC 58.223 45.455 5.23 0.00 0.00 2.92
8290 9039 3.193903 TCGTCCGGAAATACTTGTCATCA 59.806 43.478 5.23 0.00 0.00 3.07
8291 9040 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
8292 9041 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
8293 9042 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
8294 9043 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
8295 9044 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
8296 9045 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
8297 9046 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
8298 9047 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
8306 9055 9.918630 ACTTGTCATCAAAATGAATAAAAGGAG 57.081 29.630 0.00 0.00 43.42 3.69
8376 9125 9.834628 TCATTTTAATGACAAGTATTTTCGGAC 57.165 29.630 1.12 0.00 40.32 4.79
8377 9126 8.785101 CATTTTAATGACAAGTATTTTCGGACG 58.215 33.333 0.00 0.00 38.70 4.79
8378 9127 4.939509 AATGACAAGTATTTTCGGACGG 57.060 40.909 0.00 0.00 0.00 4.79
8379 9128 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
8380 9129 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
8381 9130 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
8382 9131 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
8383 9132 3.007182 ACAAGTATTTTCGGACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
8384 9133 3.521947 AGTATTTTCGGACGGAGGAAG 57.478 47.619 0.00 0.00 0.00 3.46
8385 9134 2.830321 AGTATTTTCGGACGGAGGAAGT 59.170 45.455 0.00 0.00 0.00 3.01
8386 9135 2.853235 ATTTTCGGACGGAGGAAGTT 57.147 45.000 0.00 0.00 0.00 2.66
8387 9136 2.625695 TTTTCGGACGGAGGAAGTTT 57.374 45.000 0.00 0.00 0.00 2.66
8388 9137 2.625695 TTTCGGACGGAGGAAGTTTT 57.374 45.000 0.00 0.00 0.00 2.43
8389 9138 2.625695 TTCGGACGGAGGAAGTTTTT 57.374 45.000 0.00 0.00 0.00 1.94
8409 9158 3.430333 TTTGAACTGAAAGCGGTTTCC 57.570 42.857 30.91 18.82 43.48 3.13
8410 9159 1.314730 TGAACTGAAAGCGGTTTCCC 58.685 50.000 30.91 19.52 43.48 3.97
8411 9160 0.596577 GAACTGAAAGCGGTTTCCCC 59.403 55.000 30.91 16.52 43.48 4.81
8420 9169 4.295199 GGTTTCCCCGCCCCAACT 62.295 66.667 0.00 0.00 0.00 3.16
8421 9170 2.203582 GTTTCCCCGCCCCAACTT 60.204 61.111 0.00 0.00 0.00 2.66
8422 9171 1.835267 GTTTCCCCGCCCCAACTTT 60.835 57.895 0.00 0.00 0.00 2.66
8423 9172 1.075151 TTTCCCCGCCCCAACTTTT 60.075 52.632 0.00 0.00 0.00 2.27
8424 9173 0.691413 TTTCCCCGCCCCAACTTTTT 60.691 50.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.827087 CGCCAGAGCATCGCAGGT 62.827 66.667 0.00 0.00 42.67 4.00
14 15 3.884704 AAGCATCTTTGGGCCGCCA 62.885 57.895 12.58 0.00 0.00 5.69
23 24 1.128692 GCGCTACAACGAAGCATCTTT 59.871 47.619 0.00 0.00 40.08 2.52
32 33 0.664224 TATCATCGGCGCTACAACGA 59.336 50.000 7.64 7.91 41.20 3.85
47 48 2.063979 CCAGGCCACCCGAGTATCA 61.064 63.158 5.01 0.00 35.76 2.15
89 90 1.895238 GGCACTGCAATGGAGCATT 59.105 52.632 0.46 0.00 44.68 3.56
134 143 4.235406 GGCACTGCACTAGAGTGTCACT 62.235 54.545 4.81 4.81 44.06 3.41
144 153 2.342279 GGTGTCGGCACTGCACTA 59.658 61.111 21.13 0.00 44.65 2.74
222 231 2.980233 GCTGCAAGTCACGGCCTT 60.980 61.111 0.00 0.00 35.30 4.35
421 434 3.861689 GCGTGGTAAAGCGTAGAAAGTAT 59.138 43.478 0.00 0.00 0.00 2.12
464 477 1.815421 CTGCGCCGTCCAATTAGCT 60.815 57.895 4.18 0.00 0.00 3.32
494 507 3.057019 CCGACTGATTTTTGACGAGACA 58.943 45.455 0.00 0.00 0.00 3.41
550 563 8.049721 CCCTGTCTTCCAAAATACTCTAAATCT 58.950 37.037 0.00 0.00 0.00 2.40
551 564 8.047310 TCCCTGTCTTCCAAAATACTCTAAATC 58.953 37.037 0.00 0.00 0.00 2.17
607 620 3.686916 AGAGAAATATTCGCCTAGGGC 57.313 47.619 11.72 1.76 46.75 5.19
680 693 9.388346 CGTCTCTGTTATCTGTTATCTGTTATC 57.612 37.037 0.00 0.00 0.00 1.75
681 694 8.904834 ACGTCTCTGTTATCTGTTATCTGTTAT 58.095 33.333 0.00 0.00 0.00 1.89
682 695 8.182227 CACGTCTCTGTTATCTGTTATCTGTTA 58.818 37.037 0.00 0.00 0.00 2.41
683 696 7.030165 CACGTCTCTGTTATCTGTTATCTGTT 58.970 38.462 0.00 0.00 0.00 3.16
684 697 6.556212 CACGTCTCTGTTATCTGTTATCTGT 58.444 40.000 0.00 0.00 0.00 3.41
685 698 5.457148 GCACGTCTCTGTTATCTGTTATCTG 59.543 44.000 0.00 0.00 0.00 2.90
686 699 5.125578 TGCACGTCTCTGTTATCTGTTATCT 59.874 40.000 0.00 0.00 0.00 1.98
687 700 5.230306 GTGCACGTCTCTGTTATCTGTTATC 59.770 44.000 0.00 0.00 0.00 1.75
688 701 5.103000 GTGCACGTCTCTGTTATCTGTTAT 58.897 41.667 0.00 0.00 0.00 1.89
724 737 1.002624 CTCCGCAGTTTGGGCCTAA 60.003 57.895 4.53 0.00 0.00 2.69
964 977 2.782222 GGCCACCGTAGAGATGCGA 61.782 63.158 0.00 0.00 0.00 5.10
1075 1089 2.741985 CATGCCCTTGACGTCGCA 60.742 61.111 16.41 16.41 35.35 5.10
1637 1657 1.762370 CTTCCCCATAAAACCCATGCC 59.238 52.381 0.00 0.00 0.00 4.40
1639 1659 3.070015 GCATCTTCCCCATAAAACCCATG 59.930 47.826 0.00 0.00 0.00 3.66
1656 1676 3.996921 ACTCTGAGTTTCATGGCATCT 57.003 42.857 4.06 0.00 0.00 2.90
1689 1709 3.274288 CATTGAGCTAGTCCTTCCCAAC 58.726 50.000 0.00 0.00 0.00 3.77
1700 1720 3.739519 GCTGTCCAGGTACATTGAGCTAG 60.740 52.174 0.00 0.00 0.00 3.42
1895 1915 3.291611 GGCCAGGCAAATGGTCAG 58.708 61.111 15.19 0.00 44.75 3.51
2072 2092 1.604604 GCTGTCCTTGGCAAGTACAA 58.395 50.000 23.28 10.05 26.31 2.41
2131 2151 1.691434 TATGTCATCCATGGCGTAGCA 59.309 47.619 6.96 2.58 45.82 3.49
2137 2157 4.887071 TGGTTTACTTATGTCATCCATGGC 59.113 41.667 6.96 0.00 34.86 4.40
2146 2166 5.414765 CCAAGGAACCTGGTTTACTTATGTC 59.585 44.000 22.02 5.71 0.00 3.06
2154 2174 2.136863 TGTCCCAAGGAACCTGGTTTA 58.863 47.619 14.28 0.00 31.38 2.01
2235 2255 5.187576 TGTGATGTCCAGTGATATCTTGTCA 59.812 40.000 3.98 5.24 39.23 3.58
2325 2345 3.913799 TGTCATTTTCTGGACCCCTTCTA 59.086 43.478 0.00 0.00 33.09 2.10
2439 2459 4.578105 GCATTACTCCTTTCATCCTTGAGG 59.422 45.833 0.00 0.00 32.27 3.86
2838 2858 6.360618 ACTTCTTCTTGACAATTTCTCAGGT 58.639 36.000 0.00 0.00 0.00 4.00
2872 2892 5.117745 CGTCATATCCATCTTCATCGTCAAC 59.882 44.000 0.00 0.00 0.00 3.18
2921 2941 7.383300 GCAAAGCAACTCTTGAGAAAACATTAT 59.617 33.333 4.49 0.00 34.67 1.28
2938 2958 2.129607 CATGTTGTCTGGCAAAGCAAC 58.870 47.619 16.49 16.49 40.43 4.17
3027 3047 7.164803 GCCTCTGAGACATAGGCTTATATTTT 58.835 38.462 16.99 0.00 46.08 1.82
3153 3173 2.649312 ACCATGGAATTGAGGAAGACCA 59.351 45.455 21.47 0.00 38.94 4.02
3630 3650 0.247185 TAAGAACTACGGGGCCAACG 59.753 55.000 16.38 16.38 37.36 4.10
3704 3724 1.143329 TGGTGAGGGTGGGGCATAAA 61.143 55.000 0.00 0.00 0.00 1.40
3729 3749 4.259356 GACGCCTTTAAAACATAGGTCCT 58.741 43.478 0.00 0.00 0.00 3.85
3734 3754 5.296035 CCTTAGGGACGCCTTTAAAACATAG 59.704 44.000 0.00 0.00 33.58 2.23
3735 3755 5.187687 CCTTAGGGACGCCTTTAAAACATA 58.812 41.667 0.00 0.00 33.58 2.29
3736 3756 4.014406 CCTTAGGGACGCCTTTAAAACAT 58.986 43.478 0.00 0.00 33.58 2.71
3737 3757 3.414269 CCTTAGGGACGCCTTTAAAACA 58.586 45.455 0.00 0.00 33.58 2.83
3738 3758 2.163010 GCCTTAGGGACGCCTTTAAAAC 59.837 50.000 0.00 0.00 33.58 2.43
3739 3759 2.439409 GCCTTAGGGACGCCTTTAAAA 58.561 47.619 0.00 0.00 33.58 1.52
3740 3760 1.676615 CGCCTTAGGGACGCCTTTAAA 60.677 52.381 0.00 0.00 33.58 1.52
3741 3761 0.108041 CGCCTTAGGGACGCCTTTAA 60.108 55.000 0.00 0.00 33.58 1.52
3742 3762 0.971959 TCGCCTTAGGGACGCCTTTA 60.972 55.000 0.00 0.00 34.09 1.85
3743 3763 2.267961 CGCCTTAGGGACGCCTTT 59.732 61.111 0.00 0.00 33.58 3.11
3744 3764 2.682494 TCGCCTTAGGGACGCCTT 60.682 61.111 0.00 0.00 34.09 4.35
3745 3765 3.459063 GTCGCCTTAGGGACGCCT 61.459 66.667 0.00 0.00 44.82 5.52
3781 3801 4.394712 AGGGGGAGCGCTTTGACG 62.395 66.667 13.26 0.00 0.00 4.35
3782 3802 2.436824 GAGGGGGAGCGCTTTGAC 60.437 66.667 13.26 2.82 0.00 3.18
3783 3803 3.717294 GGAGGGGGAGCGCTTTGA 61.717 66.667 13.26 0.00 0.00 2.69
3790 3810 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
3791 3811 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
3798 3818 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
3799 3819 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
3800 3820 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
3801 3821 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
3802 3822 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
3803 3823 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
3804 3824 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
3805 3825 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
3806 3826 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
3807 3827 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
3808 3828 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
3809 3829 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
3827 3847 3.195698 CGCTTTGGACGCCTAGGC 61.196 66.667 24.75 24.75 37.85 3.93
3835 3855 4.770874 TAGGCGGGCGCTTTGGAC 62.771 66.667 7.64 0.00 41.60 4.02
3836 3856 4.467084 CTAGGCGGGCGCTTTGGA 62.467 66.667 7.64 0.00 41.60 3.53
3882 3902 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
3883 3903 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
3884 3904 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
3885 3905 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
3886 3906 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
3887 3907 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
3899 3919 2.095372 AGCTATGTTTTTAAGGCGACGC 59.905 45.455 12.43 12.43 0.00 5.19
3900 3920 3.369756 TGAGCTATGTTTTTAAGGCGACG 59.630 43.478 0.00 0.00 0.00 5.12
3901 3921 4.201822 CCTGAGCTATGTTTTTAAGGCGAC 60.202 45.833 0.00 0.00 0.00 5.19
3902 3922 3.938963 CCTGAGCTATGTTTTTAAGGCGA 59.061 43.478 0.00 0.00 0.00 5.54
3903 3923 3.938963 TCCTGAGCTATGTTTTTAAGGCG 59.061 43.478 0.00 0.00 0.00 5.52
3904 3924 4.201822 CGTCCTGAGCTATGTTTTTAAGGC 60.202 45.833 0.00 0.00 0.00 4.35
3905 3925 5.175859 TCGTCCTGAGCTATGTTTTTAAGG 58.824 41.667 0.00 0.00 0.00 2.69
3906 3926 6.402226 GGTTCGTCCTGAGCTATGTTTTTAAG 60.402 42.308 0.00 0.00 0.00 1.85
3907 3927 5.410439 GGTTCGTCCTGAGCTATGTTTTTAA 59.590 40.000 0.00 0.00 0.00 1.52
3908 3928 4.933400 GGTTCGTCCTGAGCTATGTTTTTA 59.067 41.667 0.00 0.00 0.00 1.52
3909 3929 3.751698 GGTTCGTCCTGAGCTATGTTTTT 59.248 43.478 0.00 0.00 0.00 1.94
3910 3930 3.008049 AGGTTCGTCCTGAGCTATGTTTT 59.992 43.478 0.00 0.00 46.19 2.43
3911 3931 2.567615 AGGTTCGTCCTGAGCTATGTTT 59.432 45.455 0.00 0.00 46.19 2.83
3912 3932 2.180276 AGGTTCGTCCTGAGCTATGTT 58.820 47.619 0.00 0.00 46.19 2.71
3913 3933 1.853963 AGGTTCGTCCTGAGCTATGT 58.146 50.000 0.00 0.00 46.19 2.29
3923 3943 2.032924 CAGGAAACAACAAGGTTCGTCC 59.967 50.000 0.00 0.00 45.18 4.79
3924 3944 2.681344 ACAGGAAACAACAAGGTTCGTC 59.319 45.455 0.00 0.00 45.18 4.20
3925 3945 2.718563 ACAGGAAACAACAAGGTTCGT 58.281 42.857 0.00 0.00 45.18 3.85
3926 3946 6.542852 CATATACAGGAAACAACAAGGTTCG 58.457 40.000 0.00 0.00 45.18 3.95
3934 3954 4.396166 AGCAGTGCATATACAGGAAACAAC 59.604 41.667 19.20 0.00 0.00 3.32
3937 3957 4.752101 CCTAGCAGTGCATATACAGGAAAC 59.248 45.833 19.20 0.00 0.00 2.78
4030 4050 0.318955 GCCAAGATGTTGTGGTGCAC 60.319 55.000 8.80 8.80 37.23 4.57
4157 4177 8.248945 TGTACTATTACTCCAAAGAAGCTACAC 58.751 37.037 0.00 0.00 0.00 2.90
4179 4199 3.066760 GCCCCTAAACATCTGCAATGTAC 59.933 47.826 12.78 0.00 0.00 2.90
4272 4292 4.072131 TCCAAGACATTAGCAACCAGAAC 58.928 43.478 0.00 0.00 0.00 3.01
4309 4329 5.371526 AGTAACAATTCATGATGCCGATCT 58.628 37.500 0.00 0.00 0.00 2.75
4440 4460 3.911868 TGACAAACTTGCACATAATGGC 58.088 40.909 0.00 0.00 0.00 4.40
4476 4496 2.659428 ACTTCAAAAACTCAGCCAGCT 58.341 42.857 0.00 0.00 0.00 4.24
4500 4520 6.037786 TCCTATGCTACTATTGGTATGTGC 57.962 41.667 0.00 0.00 0.00 4.57
4502 4522 6.959954 TGGATCCTATGCTACTATTGGTATGT 59.040 38.462 14.23 0.00 0.00 2.29
4503 4523 7.124901 AGTGGATCCTATGCTACTATTGGTATG 59.875 40.741 14.23 0.00 0.00 2.39
4504 4524 7.124901 CAGTGGATCCTATGCTACTATTGGTAT 59.875 40.741 14.23 0.00 0.00 2.73
4505 4525 6.437477 CAGTGGATCCTATGCTACTATTGGTA 59.563 42.308 14.23 0.00 0.00 3.25
4506 4526 5.247110 CAGTGGATCCTATGCTACTATTGGT 59.753 44.000 14.23 0.00 0.00 3.67
4507 4527 5.247110 ACAGTGGATCCTATGCTACTATTGG 59.753 44.000 14.23 0.00 0.00 3.16
4508 4528 6.352016 ACAGTGGATCCTATGCTACTATTG 57.648 41.667 14.23 0.00 0.00 1.90
4509 4529 7.242359 ACTACAGTGGATCCTATGCTACTATT 58.758 38.462 14.23 0.40 0.00 1.73
4510 4530 6.795590 ACTACAGTGGATCCTATGCTACTAT 58.204 40.000 14.23 0.00 0.00 2.12
4594 4771 4.216687 GGATCCGTCCACAAACAAATACAA 59.783 41.667 0.00 0.00 44.42 2.41
4596 4773 3.181514 CGGATCCGTCCACAAACAAATAC 60.182 47.826 26.35 0.00 45.37 1.89
4604 4781 2.652095 GGTCCGGATCCGTCCACAA 61.652 63.158 31.22 7.82 45.37 3.33
4605 4782 3.072468 GGTCCGGATCCGTCCACA 61.072 66.667 31.22 8.05 45.37 4.17
4624 4801 2.045438 ACATCAATGCCCGCGGAA 60.045 55.556 30.73 15.75 0.00 4.30
4632 4809 2.537560 CCGGCTCCGACATCAATGC 61.538 63.158 10.28 0.00 42.83 3.56
4635 4812 4.467084 GGCCGGCTCCGACATCAA 62.467 66.667 28.56 0.00 42.83 2.57
4734 4913 1.134699 GGGTCATCGAGTGCTGAATCA 60.135 52.381 0.00 0.00 0.00 2.57
4814 5000 1.463056 TGCGGATGAAACAACGATGAC 59.537 47.619 0.00 0.00 0.00 3.06
4848 5034 2.579207 GCACTACGCTGAGTAATCCA 57.421 50.000 0.00 0.00 37.77 3.41
4930 5119 3.320541 CCTGGCAAGTGTTTGGTGAAATA 59.679 43.478 0.00 0.00 34.79 1.40
5082 5301 3.000819 CGCCACTCTACCACCCCA 61.001 66.667 0.00 0.00 0.00 4.96
5109 5328 1.144936 CATCCACTTCCTCCCTCGC 59.855 63.158 0.00 0.00 0.00 5.03
5110 5329 1.144936 GCATCCACTTCCTCCCTCG 59.855 63.158 0.00 0.00 0.00 4.63
5111 5330 0.179936 CTGCATCCACTTCCTCCCTC 59.820 60.000 0.00 0.00 0.00 4.30
5163 5382 4.596585 CCCACCCAAACACCGCCT 62.597 66.667 0.00 0.00 0.00 5.52
5234 5454 0.989602 ACCGGAAGAAAACTAGGGGG 59.010 55.000 9.46 0.00 0.00 5.40
5235 5455 2.817844 CAAACCGGAAGAAAACTAGGGG 59.182 50.000 9.46 0.00 0.00 4.79
5236 5456 3.746940 TCAAACCGGAAGAAAACTAGGG 58.253 45.455 9.46 0.00 0.00 3.53
5237 5457 3.751698 CCTCAAACCGGAAGAAAACTAGG 59.248 47.826 9.46 0.00 0.00 3.02
5238 5458 3.751698 CCCTCAAACCGGAAGAAAACTAG 59.248 47.826 9.46 0.00 0.00 2.57
5239 5459 3.391955 TCCCTCAAACCGGAAGAAAACTA 59.608 43.478 9.46 0.00 0.00 2.24
5240 5460 2.173996 TCCCTCAAACCGGAAGAAAACT 59.826 45.455 9.46 0.00 0.00 2.66
5241 5461 2.578786 TCCCTCAAACCGGAAGAAAAC 58.421 47.619 9.46 0.00 0.00 2.43
5242 5462 3.300239 TTCCCTCAAACCGGAAGAAAA 57.700 42.857 9.46 0.00 33.14 2.29
5243 5463 3.300239 TTTCCCTCAAACCGGAAGAAA 57.700 42.857 9.46 3.41 39.29 2.52
5244 5464 2.953648 GTTTTCCCTCAAACCGGAAGAA 59.046 45.455 9.46 0.00 39.29 2.52
5245 5465 2.578786 GTTTTCCCTCAAACCGGAAGA 58.421 47.619 9.46 1.13 39.29 2.87
5246 5466 1.265905 CGTTTTCCCTCAAACCGGAAG 59.734 52.381 9.46 0.00 39.29 3.46
5247 5467 1.310904 CGTTTTCCCTCAAACCGGAA 58.689 50.000 9.46 0.00 36.35 4.30
5248 5468 0.535553 CCGTTTTCCCTCAAACCGGA 60.536 55.000 9.46 0.00 34.73 5.14
5249 5469 0.535553 TCCGTTTTCCCTCAAACCGG 60.536 55.000 0.00 0.00 33.71 5.28
5250 5470 0.589708 GTCCGTTTTCCCTCAAACCG 59.410 55.000 0.00 0.00 33.71 4.44
5251 5471 1.682740 TGTCCGTTTTCCCTCAAACC 58.317 50.000 0.00 0.00 33.71 3.27
5252 5472 2.543031 GCTTGTCCGTTTTCCCTCAAAC 60.543 50.000 0.00 0.00 33.90 2.93
5253 5473 1.679153 GCTTGTCCGTTTTCCCTCAAA 59.321 47.619 0.00 0.00 0.00 2.69
5254 5474 1.314730 GCTTGTCCGTTTTCCCTCAA 58.685 50.000 0.00 0.00 0.00 3.02
5255 5475 0.882927 CGCTTGTCCGTTTTCCCTCA 60.883 55.000 0.00 0.00 0.00 3.86
5256 5476 1.574702 CCGCTTGTCCGTTTTCCCTC 61.575 60.000 0.00 0.00 0.00 4.30
5257 5477 1.599797 CCGCTTGTCCGTTTTCCCT 60.600 57.895 0.00 0.00 0.00 4.20
5258 5478 1.598685 TCCGCTTGTCCGTTTTCCC 60.599 57.895 0.00 0.00 0.00 3.97
5259 5479 0.883370 AGTCCGCTTGTCCGTTTTCC 60.883 55.000 0.00 0.00 0.00 3.13
5260 5480 0.234884 CAGTCCGCTTGTCCGTTTTC 59.765 55.000 0.00 0.00 0.00 2.29
5261 5481 0.179067 TCAGTCCGCTTGTCCGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
5262 5482 0.878961 GTCAGTCCGCTTGTCCGTTT 60.879 55.000 0.00 0.00 0.00 3.60
5263 5483 1.300697 GTCAGTCCGCTTGTCCGTT 60.301 57.895 0.00 0.00 0.00 4.44
5264 5484 2.338984 GTCAGTCCGCTTGTCCGT 59.661 61.111 0.00 0.00 0.00 4.69
5265 5485 2.805353 CGTCAGTCCGCTTGTCCG 60.805 66.667 0.00 0.00 0.00 4.79
5284 5773 4.101790 CACATGCAACGCCGTCCC 62.102 66.667 0.00 0.00 0.00 4.46
5291 5780 1.541147 ACCCTCAAATCACATGCAACG 59.459 47.619 0.00 0.00 0.00 4.10
5313 5842 4.202461 ACACTAAAGGTCATCTCCAAAGCA 60.202 41.667 0.00 0.00 0.00 3.91
5326 5855 2.234908 CCTCTAGCAGCACACTAAAGGT 59.765 50.000 0.00 0.00 0.00 3.50
5339 5868 8.741901 GTTGATTCAACCTACAGCCTCTAGCA 62.742 46.154 17.07 0.00 40.22 3.49
5340 5869 3.133003 TGATTCAACCTACAGCCTCTAGC 59.867 47.826 0.00 0.00 44.25 3.42
5341 5870 5.112686 GTTGATTCAACCTACAGCCTCTAG 58.887 45.833 17.07 0.00 38.30 2.43
5360 5889 4.566004 AGTTCTATAAGCGCAACTGTTGA 58.434 39.130 23.81 3.02 0.00 3.18
5536 6080 4.085357 ACTCAAAGATGCCAAGTACACA 57.915 40.909 0.00 0.00 0.00 3.72
5545 6089 4.870363 TGCTAACAAAACTCAAAGATGCC 58.130 39.130 0.00 0.00 0.00 4.40
5829 6373 3.700038 TCAATATGCCACATTGCACATGA 59.300 39.130 13.53 0.00 45.48 3.07
5929 6473 6.260050 ACATGAAACTATGCTACATTAACCCG 59.740 38.462 0.00 0.00 0.00 5.28
5933 6477 9.448438 AACTCACATGAAACTATGCTACATTAA 57.552 29.630 0.00 0.00 0.00 1.40
6054 6599 8.260114 ACAAGAAGAAACAATTTCAAAGGACAT 58.740 29.630 4.25 0.00 42.10 3.06
6449 7180 2.021931 GCTTCGGCGATCTTTGCG 59.978 61.111 11.76 0.00 0.00 4.85
6456 7187 0.320771 ACAGTCTTTGCTTCGGCGAT 60.321 50.000 11.76 0.00 45.37 4.58
6461 7192 3.885484 ATTGTCACAGTCTTTGCTTCG 57.115 42.857 0.00 0.00 0.00 3.79
6472 7203 6.082338 CCTTCGATTTCTTCAATTGTCACAG 58.918 40.000 5.13 0.00 0.00 3.66
6482 7213 4.451096 GCAAGTACACCTTCGATTTCTTCA 59.549 41.667 0.00 0.00 0.00 3.02
6597 7329 6.417258 TGGAATCTCAAGAAAGCACATGATA 58.583 36.000 0.00 0.00 0.00 2.15
6953 7691 6.102663 GTCAGCAGTTGTACAATCAGTAGAT 58.897 40.000 12.26 0.00 35.53 1.98
6964 7702 2.290367 TGCATTGTGTCAGCAGTTGTAC 59.710 45.455 0.00 0.00 33.75 2.90
6972 7710 5.490139 ACTACATAATGCATTGTGTCAGC 57.510 39.130 35.71 0.00 40.54 4.26
7251 7998 5.602978 AGGAACTGAACTCTTACCTTTCTCA 59.397 40.000 0.00 0.00 37.18 3.27
7314 8061 1.227497 CCCGAGATCTTCAGCCAGC 60.227 63.158 0.00 0.00 0.00 4.85
7344 8091 3.951775 ACGCATCTCTTCTTTGTCTCT 57.048 42.857 0.00 0.00 0.00 3.10
7365 8112 3.489229 CGATATCGTTCTTGCTCCTGACA 60.489 47.826 17.06 0.00 34.11 3.58
7420 8167 2.228138 TTTGTTAGGTCGCTTCACGT 57.772 45.000 0.00 0.00 44.19 4.49
7468 8215 3.054655 GGGGGTATAGCTTTCACTGTTCA 60.055 47.826 0.00 0.00 0.00 3.18
7588 8335 9.396022 GATGAAGAACCTGGAACATAAAGATTA 57.604 33.333 0.00 0.00 38.20 1.75
7618 8365 5.250543 TGGAAGGTAAGAGGAATCAATCACA 59.749 40.000 0.00 0.00 0.00 3.58
7718 8465 6.455360 TCGTAGGTAGTCCGTATTTGAAAT 57.545 37.500 0.00 0.00 39.05 2.17
7719 8466 5.895636 TCGTAGGTAGTCCGTATTTGAAA 57.104 39.130 0.00 0.00 39.05 2.69
7728 8475 2.642139 TTTGCTTCGTAGGTAGTCCG 57.358 50.000 0.00 0.00 39.05 4.79
7736 8483 7.128331 CCATATTCACTCATTTTGCTTCGTAG 58.872 38.462 0.00 0.00 0.00 3.51
7740 8487 5.045872 GGCCATATTCACTCATTTTGCTTC 58.954 41.667 0.00 0.00 0.00 3.86
7788 8535 9.906660 TTCCGTTACTAAATACGAGTCTTTTTA 57.093 29.630 0.00 0.00 40.03 1.52
7807 8554 6.183360 GCAAGAGACATCTACTACTTCCGTTA 60.183 42.308 0.00 0.00 33.45 3.18
7816 8563 4.457949 TGAACACGCAAGAGACATCTACTA 59.542 41.667 0.00 0.00 43.62 1.82
7844 8591 3.940209 TGATTCAAACATGGCCAGTTC 57.060 42.857 13.05 4.52 0.00 3.01
7880 8628 6.653320 GTCTACCACACTGATACCAAAAATCA 59.347 38.462 0.00 0.00 32.56 2.57
7883 8631 5.072600 AGGTCTACCACACTGATACCAAAAA 59.927 40.000 1.26 0.00 38.89 1.94
7934 8683 3.080319 GAGTGCAATTCTCAGAAGGCTT 58.920 45.455 13.37 0.00 32.79 4.35
7975 8724 4.999950 AGCTATACGTACGCACCTTATACT 59.000 41.667 16.72 7.03 0.00 2.12
7976 8725 5.106948 TGAGCTATACGTACGCACCTTATAC 60.107 44.000 16.72 5.14 0.00 1.47
7977 8726 4.996758 TGAGCTATACGTACGCACCTTATA 59.003 41.667 16.72 8.59 0.00 0.98
7978 8727 3.817084 TGAGCTATACGTACGCACCTTAT 59.183 43.478 16.72 7.84 0.00 1.73
7979 8728 3.205338 TGAGCTATACGTACGCACCTTA 58.795 45.455 16.72 0.00 0.00 2.69
7980 8729 2.019249 TGAGCTATACGTACGCACCTT 58.981 47.619 16.72 0.00 0.00 3.50
7981 8730 1.671979 TGAGCTATACGTACGCACCT 58.328 50.000 16.72 4.69 0.00 4.00
7982 8731 2.114825 GTTGAGCTATACGTACGCACC 58.885 52.381 16.72 10.92 0.00 5.01
7983 8732 2.114825 GGTTGAGCTATACGTACGCAC 58.885 52.381 16.72 13.08 0.00 5.34
7984 8733 2.019249 AGGTTGAGCTATACGTACGCA 58.981 47.619 16.72 1.76 0.00 5.24
7985 8734 2.032550 TCAGGTTGAGCTATACGTACGC 59.967 50.000 16.72 9.93 0.00 4.42
7986 8735 3.957671 TCAGGTTGAGCTATACGTACG 57.042 47.619 15.01 15.01 0.00 3.67
7987 8736 5.246145 AGTTCAGGTTGAGCTATACGTAC 57.754 43.478 0.00 0.00 36.14 3.67
7988 8737 5.909621 AAGTTCAGGTTGAGCTATACGTA 57.090 39.130 0.00 0.00 36.93 3.57
7989 8738 4.803098 AAGTTCAGGTTGAGCTATACGT 57.197 40.909 0.00 0.00 36.93 3.57
7990 8739 7.203910 AGATAAAGTTCAGGTTGAGCTATACG 58.796 38.462 0.00 0.00 36.93 3.06
7991 8740 8.821894 CAAGATAAAGTTCAGGTTGAGCTATAC 58.178 37.037 0.00 0.00 36.93 1.47
7992 8741 7.987458 CCAAGATAAAGTTCAGGTTGAGCTATA 59.013 37.037 0.00 0.00 36.93 1.31
7993 8742 6.825721 CCAAGATAAAGTTCAGGTTGAGCTAT 59.174 38.462 0.00 0.00 36.93 2.97
7994 8743 6.013725 TCCAAGATAAAGTTCAGGTTGAGCTA 60.014 38.462 0.00 0.00 36.93 3.32
7995 8744 5.006386 CCAAGATAAAGTTCAGGTTGAGCT 58.994 41.667 0.00 0.00 39.70 4.09
7996 8745 5.003804 TCCAAGATAAAGTTCAGGTTGAGC 58.996 41.667 0.00 0.00 0.00 4.26
7997 8746 6.234177 ACTCCAAGATAAAGTTCAGGTTGAG 58.766 40.000 0.00 0.00 0.00 3.02
7998 8747 6.187727 ACTCCAAGATAAAGTTCAGGTTGA 57.812 37.500 0.00 0.00 0.00 3.18
7999 8748 9.667107 TTATACTCCAAGATAAAGTTCAGGTTG 57.333 33.333 0.00 0.00 0.00 3.77
8000 8749 9.892130 CTTATACTCCAAGATAAAGTTCAGGTT 57.108 33.333 0.00 0.00 0.00 3.50
8001 8750 8.487028 CCTTATACTCCAAGATAAAGTTCAGGT 58.513 37.037 0.00 0.00 0.00 4.00
8002 8751 8.487028 ACCTTATACTCCAAGATAAAGTTCAGG 58.513 37.037 0.00 0.00 0.00 3.86
8003 8752 9.319143 CACCTTATACTCCAAGATAAAGTTCAG 57.681 37.037 0.00 0.00 0.00 3.02
8004 8753 7.769044 GCACCTTATACTCCAAGATAAAGTTCA 59.231 37.037 0.00 0.00 0.00 3.18
8005 8754 7.042658 CGCACCTTATACTCCAAGATAAAGTTC 60.043 40.741 0.00 0.00 0.00 3.01
8006 8755 6.761714 CGCACCTTATACTCCAAGATAAAGTT 59.238 38.462 0.00 0.00 0.00 2.66
8007 8756 6.127140 ACGCACCTTATACTCCAAGATAAAGT 60.127 38.462 0.00 0.00 0.00 2.66
8008 8757 6.281405 ACGCACCTTATACTCCAAGATAAAG 58.719 40.000 0.00 0.00 0.00 1.85
8009 8758 6.229936 ACGCACCTTATACTCCAAGATAAA 57.770 37.500 0.00 0.00 0.00 1.40
8010 8759 5.864418 ACGCACCTTATACTCCAAGATAA 57.136 39.130 0.00 0.00 0.00 1.75
8011 8760 5.049198 CGTACGCACCTTATACTCCAAGATA 60.049 44.000 0.52 0.00 0.00 1.98
8012 8761 4.261489 CGTACGCACCTTATACTCCAAGAT 60.261 45.833 0.52 0.00 0.00 2.40
8013 8762 3.065786 CGTACGCACCTTATACTCCAAGA 59.934 47.826 0.52 0.00 0.00 3.02
8014 8763 3.181493 ACGTACGCACCTTATACTCCAAG 60.181 47.826 16.72 0.00 0.00 3.61
8015 8764 2.754552 ACGTACGCACCTTATACTCCAA 59.245 45.455 16.72 0.00 0.00 3.53
8016 8765 2.368439 ACGTACGCACCTTATACTCCA 58.632 47.619 16.72 0.00 0.00 3.86
8017 8766 4.756084 ATACGTACGCACCTTATACTCC 57.244 45.455 16.72 0.00 0.00 3.85
8018 8767 6.401581 GGTCTATACGTACGCACCTTATACTC 60.402 46.154 16.72 3.81 0.00 2.59
8112 8861 6.487331 CGGAGGAAGTACAATACTATCTCAGT 59.513 42.308 14.79 0.00 38.26 3.41
8124 8873 5.750352 ATTTAGGAACGGAGGAAGTACAA 57.250 39.130 0.00 0.00 0.00 2.41
8129 8878 5.731591 ACTTGTATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
8130 8879 5.482878 AGACTTGTATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
8131 8880 5.021458 AGACTTGTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
8132 8881 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
8133 8882 7.668525 AAAAGACTTGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
8134 8883 9.211485 CTAAAAAGACTTGTATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
8135 8884 9.211485 TCTAAAAAGACTTGTATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
8159 8908 9.985730 ACATTTGTATGTTCATTTGAAATGTCT 57.014 25.926 16.62 4.26 42.29 3.41
8204 8953 6.092259 ACGGAGCAAAATAAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
8205 8954 6.170506 ACGGAGCAAAATAAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
8206 8955 6.663944 ACGGAGCAAAATAAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
8207 8956 7.985184 ACATACGGAGCAAAATAAGTGAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
8208 8957 6.823689 ACATACGGAGCAAAATAAGTGAATCT 59.176 34.615 0.00 0.00 0.00 2.40
8209 8958 7.016361 ACATACGGAGCAAAATAAGTGAATC 57.984 36.000 0.00 0.00 0.00 2.52
8210 8959 7.769044 ACTACATACGGAGCAAAATAAGTGAAT 59.231 33.333 0.00 0.00 0.00 2.57
8211 8960 7.101054 ACTACATACGGAGCAAAATAAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
8212 8961 6.636705 ACTACATACGGAGCAAAATAAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
8213 8962 6.533723 TGACTACATACGGAGCAAAATAAGTG 59.466 38.462 0.00 0.00 0.00 3.16
8214 8963 6.534079 GTGACTACATACGGAGCAAAATAAGT 59.466 38.462 0.00 0.00 0.00 2.24
8215 8964 6.757010 AGTGACTACATACGGAGCAAAATAAG 59.243 38.462 0.00 0.00 0.00 1.73
8216 8965 6.636705 AGTGACTACATACGGAGCAAAATAA 58.363 36.000 0.00 0.00 0.00 1.40
8217 8966 6.216801 AGTGACTACATACGGAGCAAAATA 57.783 37.500 0.00 0.00 0.00 1.40
8218 8967 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
8219 8968 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
8220 8969 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
8221 8970 3.845178 CAAGTGACTACATACGGAGCAA 58.155 45.455 0.00 0.00 0.00 3.91
8222 8971 2.416836 GCAAGTGACTACATACGGAGCA 60.417 50.000 0.00 0.00 0.00 4.26
8223 8972 2.159226 AGCAAGTGACTACATACGGAGC 60.159 50.000 0.00 0.00 0.00 4.70
8224 8973 3.439293 CAGCAAGTGACTACATACGGAG 58.561 50.000 0.00 0.00 0.00 4.63
8225 8974 2.165641 CCAGCAAGTGACTACATACGGA 59.834 50.000 0.00 0.00 0.00 4.69
8226 8975 2.165641 TCCAGCAAGTGACTACATACGG 59.834 50.000 0.00 0.00 0.00 4.02
8227 8976 3.503827 TCCAGCAAGTGACTACATACG 57.496 47.619 0.00 0.00 0.00 3.06
8228 8977 5.419542 TGATTCCAGCAAGTGACTACATAC 58.580 41.667 0.00 0.00 0.00 2.39
8229 8978 5.675684 TGATTCCAGCAAGTGACTACATA 57.324 39.130 0.00 0.00 0.00 2.29
8230 8979 4.558226 TGATTCCAGCAAGTGACTACAT 57.442 40.909 0.00 0.00 0.00 2.29
8231 8980 4.350368 TTGATTCCAGCAAGTGACTACA 57.650 40.909 0.00 0.00 0.00 2.74
8232 8981 4.997395 TCTTTGATTCCAGCAAGTGACTAC 59.003 41.667 0.00 0.00 0.00 2.73
8233 8982 4.997395 GTCTTTGATTCCAGCAAGTGACTA 59.003 41.667 0.00 0.00 32.73 2.59
8234 8983 3.817647 GTCTTTGATTCCAGCAAGTGACT 59.182 43.478 0.00 0.00 32.73 3.41
8235 8984 3.817647 AGTCTTTGATTCCAGCAAGTGAC 59.182 43.478 0.00 0.00 34.16 3.67
8236 8985 4.090761 AGTCTTTGATTCCAGCAAGTGA 57.909 40.909 0.00 0.00 0.00 3.41
8237 8986 4.843220 AAGTCTTTGATTCCAGCAAGTG 57.157 40.909 0.00 0.00 0.00 3.16
8238 8987 7.398024 AGTATAAGTCTTTGATTCCAGCAAGT 58.602 34.615 0.00 0.00 0.00 3.16
8239 8988 7.856145 AGTATAAGTCTTTGATTCCAGCAAG 57.144 36.000 0.00 0.00 0.00 4.01
8240 8989 7.336931 GGAAGTATAAGTCTTTGATTCCAGCAA 59.663 37.037 11.04 0.00 35.97 3.91
8241 8990 6.823689 GGAAGTATAAGTCTTTGATTCCAGCA 59.176 38.462 11.04 0.00 35.97 4.41
8242 8991 7.051000 AGGAAGTATAAGTCTTTGATTCCAGC 58.949 38.462 15.37 0.00 37.91 4.85
8243 8992 9.103861 GAAGGAAGTATAAGTCTTTGATTCCAG 57.896 37.037 15.37 0.00 37.91 3.86
8244 8993 7.764443 CGAAGGAAGTATAAGTCTTTGATTCCA 59.236 37.037 15.37 0.00 37.91 3.53
8245 8994 7.764901 ACGAAGGAAGTATAAGTCTTTGATTCC 59.235 37.037 0.00 9.10 36.12 3.01
8246 8995 8.705048 ACGAAGGAAGTATAAGTCTTTGATTC 57.295 34.615 0.00 0.00 0.00 2.52
8247 8996 7.764901 GGACGAAGGAAGTATAAGTCTTTGATT 59.235 37.037 0.00 0.00 0.00 2.57
8248 8997 7.266400 GGACGAAGGAAGTATAAGTCTTTGAT 58.734 38.462 0.00 0.00 0.00 2.57
8249 8998 6.624423 CGGACGAAGGAAGTATAAGTCTTTGA 60.624 42.308 0.00 0.00 0.00 2.69
8250 8999 5.515626 CGGACGAAGGAAGTATAAGTCTTTG 59.484 44.000 0.00 0.00 0.00 2.77
8251 9000 5.393896 CCGGACGAAGGAAGTATAAGTCTTT 60.394 44.000 0.00 0.00 0.00 2.52
8252 9001 4.097589 CCGGACGAAGGAAGTATAAGTCTT 59.902 45.833 0.00 0.00 0.00 3.01
8253 9002 3.631227 CCGGACGAAGGAAGTATAAGTCT 59.369 47.826 0.00 0.00 0.00 3.24
8254 9003 3.629398 TCCGGACGAAGGAAGTATAAGTC 59.371 47.826 0.00 0.00 34.33 3.01
8255 9004 3.624777 TCCGGACGAAGGAAGTATAAGT 58.375 45.455 0.00 0.00 34.33 2.24
8256 9005 4.644103 TTCCGGACGAAGGAAGTATAAG 57.356 45.455 1.83 0.00 42.33 1.73
8263 9012 3.007182 ACAAGTATTTCCGGACGAAGGAA 59.993 43.478 1.83 0.00 45.19 3.36
8264 9013 2.564062 ACAAGTATTTCCGGACGAAGGA 59.436 45.455 1.83 0.00 35.69 3.36
8265 9014 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
8266 9015 3.581755 TGACAAGTATTTCCGGACGAAG 58.418 45.455 1.83 0.00 0.00 3.79
8267 9016 3.663995 TGACAAGTATTTCCGGACGAA 57.336 42.857 1.83 0.00 0.00 3.85
8268 9017 3.193903 TGATGACAAGTATTTCCGGACGA 59.806 43.478 1.83 0.00 0.00 4.20
8269 9018 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
8270 9019 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
8271 9020 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
8272 9021 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
8273 9022 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
8280 9029 9.918630 CTCCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
8350 9099 9.834628 GTCCGAAAATACTTGTCATTAAAATGA 57.165 29.630 1.23 1.23 42.78 2.57
8351 9100 8.785101 CGTCCGAAAATACTTGTCATTAAAATG 58.215 33.333 0.00 0.00 37.75 2.32
8352 9101 7.966204 CCGTCCGAAAATACTTGTCATTAAAAT 59.034 33.333 0.00 0.00 0.00 1.82
8353 9102 7.172875 TCCGTCCGAAAATACTTGTCATTAAAA 59.827 33.333 0.00 0.00 0.00 1.52
8354 9103 6.649973 TCCGTCCGAAAATACTTGTCATTAAA 59.350 34.615 0.00 0.00 0.00 1.52
8355 9104 6.164876 TCCGTCCGAAAATACTTGTCATTAA 58.835 36.000 0.00 0.00 0.00 1.40
8356 9105 5.722263 TCCGTCCGAAAATACTTGTCATTA 58.278 37.500 0.00 0.00 0.00 1.90
8357 9106 4.571919 TCCGTCCGAAAATACTTGTCATT 58.428 39.130 0.00 0.00 0.00 2.57
8358 9107 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
8359 9108 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
8360 9109 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
8361 9110 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
8362 9111 3.241067 TCCTCCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
8363 9112 3.260128 ACTTCCTCCGTCCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
8364 9113 2.830321 ACTTCCTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
8365 9114 3.242549 ACTTCCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
8366 9115 3.967332 AACTTCCTCCGTCCGAAAATA 57.033 42.857 0.00 0.00 0.00 1.40
8367 9116 2.853235 AACTTCCTCCGTCCGAAAAT 57.147 45.000 0.00 0.00 0.00 1.82
8368 9117 2.625695 AAACTTCCTCCGTCCGAAAA 57.374 45.000 0.00 0.00 0.00 2.29
8369 9118 2.625695 AAAACTTCCTCCGTCCGAAA 57.374 45.000 0.00 0.00 0.00 3.46
8370 9119 2.625695 AAAAACTTCCTCCGTCCGAA 57.374 45.000 0.00 0.00 0.00 4.30
8387 9136 4.177783 GGAAACCGCTTTCAGTTCAAAAA 58.822 39.130 5.61 0.00 38.04 1.94
8388 9137 3.429684 GGGAAACCGCTTTCAGTTCAAAA 60.430 43.478 5.61 0.00 43.64 2.44
8389 9138 2.100087 GGGAAACCGCTTTCAGTTCAAA 59.900 45.455 5.61 0.00 43.64 2.69
8390 9139 1.679153 GGGAAACCGCTTTCAGTTCAA 59.321 47.619 5.61 0.00 43.64 2.69
8391 9140 1.314730 GGGAAACCGCTTTCAGTTCA 58.685 50.000 5.61 0.00 43.64 3.18
8404 9153 1.404479 AAAAGTTGGGGCGGGGAAAC 61.404 55.000 0.00 0.00 0.00 2.78
8405 9154 0.691413 AAAAAGTTGGGGCGGGGAAA 60.691 50.000 0.00 0.00 0.00 3.13
8406 9155 1.075151 AAAAAGTTGGGGCGGGGAA 60.075 52.632 0.00 0.00 0.00 3.97
8407 9156 2.609920 AAAAAGTTGGGGCGGGGA 59.390 55.556 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.