Multiple sequence alignment - TraesCS5A01G112100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G112100 chr5A 100.000 2645 0 0 1 2645 217145669 217148313 0.000000e+00 4885.0
1 TraesCS5A01G112100 chr5A 95.161 806 39 0 41 846 74706115 74706920 0.000000e+00 1273.0
2 TraesCS5A01G112100 chr5A 91.743 109 7 1 1923 2031 608874794 608874688 1.640000e-32 150.0
3 TraesCS5A01G112100 chr5A 91.954 87 7 0 2273 2359 217147857 217147943 3.580000e-24 122.0
4 TraesCS5A01G112100 chr5A 91.954 87 7 0 2189 2275 217147941 217148027 3.580000e-24 122.0
5 TraesCS5A01G112100 chr5A 83.810 105 15 2 2171 2273 584047428 584047532 6.030000e-17 99.0
6 TraesCS5A01G112100 chr5D 94.118 1071 37 5 867 1914 199884267 199885334 0.000000e+00 1605.0
7 TraesCS5A01G112100 chr5D 94.665 806 42 1 41 845 156585689 156586494 0.000000e+00 1249.0
8 TraesCS5A01G112100 chr5D 93.031 287 12 3 2360 2644 199885518 199885798 1.890000e-111 412.0
9 TraesCS5A01G112100 chr5D 100.000 29 0 0 2247 2275 81152948 81152976 1.000000e-03 54.7
10 TraesCS5A01G112100 chr5B 95.152 990 40 6 921 1906 210734481 210735466 0.000000e+00 1555.0
11 TraesCS5A01G112100 chr5B 94.417 806 44 1 41 846 522041766 522040962 0.000000e+00 1238.0
12 TraesCS5A01G112100 chr5B 92.413 804 59 2 41 843 275264981 275265783 0.000000e+00 1146.0
13 TraesCS5A01G112100 chr5B 94.203 276 8 3 2371 2644 210735771 210736040 5.270000e-112 414.0
14 TraesCS5A01G112100 chr5B 84.706 85 13 0 2273 2357 667842551 667842635 4.690000e-13 86.1
15 TraesCS5A01G112100 chr3D 94.541 806 42 2 41 845 251689258 251690062 0.000000e+00 1243.0
16 TraesCS5A01G112100 chr1D 94.527 804 44 0 41 844 270277909 270277106 0.000000e+00 1242.0
17 TraesCS5A01G112100 chr1D 81.287 171 31 1 2103 2272 318585753 318585923 1.280000e-28 137.0
18 TraesCS5A01G112100 chr1D 87.500 80 10 0 2277 2356 318585844 318585923 2.800000e-15 93.5
19 TraesCS5A01G112100 chr4D 94.286 805 46 0 41 845 231979713 231978909 0.000000e+00 1232.0
20 TraesCS5A01G112100 chr7D 93.532 804 49 3 41 844 600947715 600948515 0.000000e+00 1194.0
21 TraesCS5A01G112100 chr7D 81.609 87 11 5 2273 2356 577092257 577092341 1.700000e-07 67.6
22 TraesCS5A01G112100 chr7A 93.309 807 50 2 41 847 167929501 167928699 0.000000e+00 1188.0
23 TraesCS5A01G112100 chr7A 91.509 106 6 3 1926 2031 632540749 632540647 2.740000e-30 143.0
24 TraesCS5A01G112100 chr6D 92.982 114 6 2 1923 2036 470846297 470846408 5.860000e-37 165.0
25 TraesCS5A01G112100 chr6D 84.426 122 16 3 2154 2273 385564721 385564841 1.660000e-22 117.0
26 TraesCS5A01G112100 chr4A 92.727 110 6 2 1923 2032 347308326 347308433 9.800000e-35 158.0
27 TraesCS5A01G112100 chr4A 90.826 109 8 2 1923 2031 343784075 343784181 7.630000e-31 145.0
28 TraesCS5A01G112100 chr3A 90.351 114 9 2 1919 2032 41179436 41179325 5.900000e-32 148.0
29 TraesCS5A01G112100 chr2B 90.909 110 8 2 1923 2032 775857482 775857589 2.120000e-31 147.0
30 TraesCS5A01G112100 chr2A 89.565 115 10 2 1917 2031 111501139 111501251 7.630000e-31 145.0
31 TraesCS5A01G112100 chr1A 88.889 117 10 2 1920 2035 266754464 266754578 9.870000e-30 141.0
32 TraesCS5A01G112100 chr1A 82.500 80 12 1 2277 2356 2238285 2238362 4.720000e-08 69.4
33 TraesCS5A01G112100 chr7B 78.481 158 32 2 2103 2259 24418795 24418639 4.660000e-18 102.0
34 TraesCS5A01G112100 chr7B 82.474 97 10 7 2273 2365 629212274 629212181 7.850000e-11 78.7
35 TraesCS5A01G112100 chr3B 87.654 81 10 0 2277 2357 384727482 384727402 7.790000e-16 95.3
36 TraesCS5A01G112100 chr2D 83.951 81 11 2 2280 2359 62963197 62963118 2.820000e-10 76.8
37 TraesCS5A01G112100 chr1B 82.143 84 14 1 2276 2358 262522645 262522562 1.310000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G112100 chr5A 217145669 217148313 2644 False 1709.666667 4885 94.6360 1 2645 3 chr5A.!!$F3 2644
1 TraesCS5A01G112100 chr5A 74706115 74706920 805 False 1273.000000 1273 95.1610 41 846 1 chr5A.!!$F1 805
2 TraesCS5A01G112100 chr5D 156585689 156586494 805 False 1249.000000 1249 94.6650 41 845 1 chr5D.!!$F2 804
3 TraesCS5A01G112100 chr5D 199884267 199885798 1531 False 1008.500000 1605 93.5745 867 2644 2 chr5D.!!$F3 1777
4 TraesCS5A01G112100 chr5B 522040962 522041766 804 True 1238.000000 1238 94.4170 41 846 1 chr5B.!!$R1 805
5 TraesCS5A01G112100 chr5B 275264981 275265783 802 False 1146.000000 1146 92.4130 41 843 1 chr5B.!!$F1 802
6 TraesCS5A01G112100 chr5B 210734481 210736040 1559 False 984.500000 1555 94.6775 921 2644 2 chr5B.!!$F3 1723
7 TraesCS5A01G112100 chr3D 251689258 251690062 804 False 1243.000000 1243 94.5410 41 845 1 chr3D.!!$F1 804
8 TraesCS5A01G112100 chr1D 270277106 270277909 803 True 1242.000000 1242 94.5270 41 844 1 chr1D.!!$R1 803
9 TraesCS5A01G112100 chr4D 231978909 231979713 804 True 1232.000000 1232 94.2860 41 845 1 chr4D.!!$R1 804
10 TraesCS5A01G112100 chr7D 600947715 600948515 800 False 1194.000000 1194 93.5320 41 844 1 chr7D.!!$F2 803
11 TraesCS5A01G112100 chr7A 167928699 167929501 802 True 1188.000000 1188 93.3090 41 847 1 chr7A.!!$R1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 643 1.070134 GGCAGCATAACCTCCGTATCA 59.930 52.381 0.0 0.0 0.0 2.15 F
1457 1480 1.006102 AAGAAGGCACAGACGACGG 60.006 57.895 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1559 0.320374 GGAACCTGATGACACGGACA 59.680 55.000 0.00 0.0 0.00 4.02 R
2532 2791 1.789464 CTGCGACTGACAGAGAAACAC 59.211 52.381 10.08 0.0 37.32 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.554835 TGGATACGATTAATCTGACACAAAAA 57.445 30.769 13.45 0.00 42.51 1.94
26 27 8.447833 TGGATACGATTAATCTGACACAAAAAC 58.552 33.333 13.45 0.00 42.51 2.43
27 28 7.634817 GGATACGATTAATCTGACACAAAAACG 59.365 37.037 13.45 0.00 0.00 3.60
28 29 6.533819 ACGATTAATCTGACACAAAAACGA 57.466 33.333 13.45 0.00 0.00 3.85
29 30 6.590357 ACGATTAATCTGACACAAAAACGAG 58.410 36.000 13.45 0.00 0.00 4.18
30 31 6.422701 ACGATTAATCTGACACAAAAACGAGA 59.577 34.615 13.45 0.00 0.00 4.04
31 32 7.117812 ACGATTAATCTGACACAAAAACGAGAT 59.882 33.333 13.45 0.00 0.00 2.75
32 33 7.423598 CGATTAATCTGACACAAAAACGAGATG 59.576 37.037 13.45 0.00 0.00 2.90
33 34 7.490962 TTAATCTGACACAAAAACGAGATGT 57.509 32.000 0.00 0.00 0.00 3.06
39 40 3.288242 CACAAAAACGAGATGTGTTCCG 58.712 45.455 0.00 0.00 39.60 4.30
256 259 5.612709 GCTTTTGTACTCATGACGAGACAAC 60.613 44.000 0.00 0.00 45.45 3.32
264 267 1.399714 TGACGAGACAACCAGACACT 58.600 50.000 0.00 0.00 0.00 3.55
309 312 5.678583 CAGGTTCTACATGGTCAATCATCT 58.321 41.667 0.00 0.00 0.00 2.90
332 335 8.008513 TCTAAATAGCGTCTAATCTTTGTCCT 57.991 34.615 0.00 0.00 0.00 3.85
333 336 8.475639 TCTAAATAGCGTCTAATCTTTGTCCTT 58.524 33.333 0.00 0.00 0.00 3.36
437 440 3.879998 TGCCTTATTATGGTCGCTTTGA 58.120 40.909 0.00 0.00 0.00 2.69
445 448 9.256477 CTTATTATGGTCGCTTTGACTATGTAA 57.744 33.333 4.41 3.69 46.92 2.41
455 458 8.946085 TCGCTTTGACTATGTAAAAATGATCTT 58.054 29.630 0.00 0.00 0.00 2.40
499 503 4.735369 TCTCCTTTGCAGGTTATTTTCCA 58.265 39.130 0.00 0.00 41.69 3.53
534 538 3.192001 TCTTCGTACGTGGTCTATGCTTT 59.808 43.478 16.05 0.00 0.00 3.51
560 564 1.164041 CGGAGTTCCAACCGCTGTTT 61.164 55.000 0.00 0.00 42.55 2.83
639 643 1.070134 GGCAGCATAACCTCCGTATCA 59.930 52.381 0.00 0.00 0.00 2.15
681 685 5.047943 ACATAGGCATAGTGACGGTCTTATC 60.048 44.000 9.88 0.00 0.00 1.75
717 722 8.902540 AGTGCCGATATGTCATCTTTTTATTA 57.097 30.769 0.00 0.00 0.00 0.98
828 833 7.169645 TGCTACGTTTTGAGTTAATAAAGACGT 59.830 33.333 15.53 15.53 37.34 4.34
865 870 5.914898 AAAATAAACCTTCCCATCTTCCG 57.085 39.130 0.00 0.00 0.00 4.30
897 902 1.828595 AGGAAGGCGGTTGTTGTTTTT 59.171 42.857 0.00 0.00 0.00 1.94
1009 1026 1.923204 GTGTGTCTCTCATGATGCGAC 59.077 52.381 0.00 4.15 0.00 5.19
1457 1480 1.006102 AAGAAGGCACAGACGACGG 60.006 57.895 0.00 0.00 0.00 4.79
1461 1484 1.251527 AAGGCACAGACGACGGAGAT 61.252 55.000 0.00 0.00 0.00 2.75
1611 1634 1.961277 CGACGGTGCTTTCCTTGCT 60.961 57.895 0.00 0.00 0.00 3.91
1789 1816 2.804572 CGGAGCACGGATTTCTGATCAT 60.805 50.000 0.00 0.00 39.42 2.45
1898 1937 3.792124 GCTTGTTTCTGGCAACACAGTAC 60.792 47.826 0.00 0.00 46.17 2.73
1899 1938 3.275617 TGTTTCTGGCAACACAGTACT 57.724 42.857 0.00 0.00 46.17 2.73
1900 1939 4.409718 TGTTTCTGGCAACACAGTACTA 57.590 40.909 0.00 0.00 46.17 1.82
1901 1940 4.377021 TGTTTCTGGCAACACAGTACTAG 58.623 43.478 0.00 0.00 46.17 2.57
1902 1941 4.141801 TGTTTCTGGCAACACAGTACTAGT 60.142 41.667 0.00 0.00 46.17 2.57
1903 1942 5.069383 TGTTTCTGGCAACACAGTACTAGTA 59.931 40.000 0.00 0.00 46.17 1.82
1904 1943 5.995565 TTCTGGCAACACAGTACTAGTAT 57.004 39.130 5.75 0.00 46.17 2.12
1905 1944 7.039574 TGTTTCTGGCAACACAGTACTAGTATA 60.040 37.037 5.75 0.00 46.17 1.47
1906 1945 7.470935 TTCTGGCAACACAGTACTAGTATAA 57.529 36.000 5.75 0.00 46.17 0.98
1907 1946 7.470935 TCTGGCAACACAGTACTAGTATAAA 57.529 36.000 5.75 0.00 46.17 1.40
1908 1947 7.898918 TCTGGCAACACAGTACTAGTATAAAA 58.101 34.615 5.75 0.00 46.17 1.52
1909 1948 8.537016 TCTGGCAACACAGTACTAGTATAAAAT 58.463 33.333 5.75 0.00 46.17 1.82
1910 1949 8.487313 TGGCAACACAGTACTAGTATAAAATG 57.513 34.615 5.75 0.00 46.17 2.32
1911 1950 8.098286 TGGCAACACAGTACTAGTATAAAATGT 58.902 33.333 5.75 0.00 46.17 2.71
1912 1951 8.601476 GGCAACACAGTACTAGTATAAAATGTC 58.399 37.037 5.75 0.30 0.00 3.06
1913 1952 9.367444 GCAACACAGTACTAGTATAAAATGTCT 57.633 33.333 5.75 0.00 0.00 3.41
1940 1979 6.769134 AAAAATATTCCCTCCGTTTCGAAT 57.231 33.333 0.00 0.00 0.00 3.34
1941 1980 6.769134 AAAATATTCCCTCCGTTTCGAATT 57.231 33.333 0.00 0.00 0.00 2.17
1942 1981 7.868906 AAAATATTCCCTCCGTTTCGAATTA 57.131 32.000 0.00 0.00 0.00 1.40
1943 1982 6.856135 AATATTCCCTCCGTTTCGAATTAC 57.144 37.500 0.00 0.00 0.00 1.89
1944 1983 3.967332 TTCCCTCCGTTTCGAATTACT 57.033 42.857 0.00 0.00 0.00 2.24
1945 1984 3.967332 TCCCTCCGTTTCGAATTACTT 57.033 42.857 0.00 0.00 0.00 2.24
1946 1985 3.592059 TCCCTCCGTTTCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
1947 1986 3.007182 TCCCTCCGTTTCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
1948 1987 3.370061 CCCTCCGTTTCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
1949 1988 3.991773 CCTCCGTTTCGAATTACTTGTCA 59.008 43.478 0.00 0.00 0.00 3.58
1950 1989 4.143179 CCTCCGTTTCGAATTACTTGTCAC 60.143 45.833 0.00 0.00 0.00 3.67
1951 1990 4.370049 TCCGTTTCGAATTACTTGTCACA 58.630 39.130 0.00 0.00 0.00 3.58
1952 1991 4.992319 TCCGTTTCGAATTACTTGTCACAT 59.008 37.500 0.00 0.00 0.00 3.21
1953 1992 6.157904 TCCGTTTCGAATTACTTGTCACATA 58.842 36.000 0.00 0.00 0.00 2.29
1954 1993 6.814644 TCCGTTTCGAATTACTTGTCACATAT 59.185 34.615 0.00 0.00 0.00 1.78
1955 1994 7.975058 TCCGTTTCGAATTACTTGTCACATATA 59.025 33.333 0.00 0.00 0.00 0.86
1956 1995 8.761497 CCGTTTCGAATTACTTGTCACATATAT 58.239 33.333 0.00 0.00 0.00 0.86
1957 1996 9.567917 CGTTTCGAATTACTTGTCACATATATG 57.432 33.333 11.29 11.29 0.00 1.78
1958 1997 9.864034 GTTTCGAATTACTTGTCACATATATGG 57.136 33.333 16.96 6.31 0.00 2.74
1959 1998 9.825109 TTTCGAATTACTTGTCACATATATGGA 57.175 29.630 16.96 8.44 0.00 3.41
1960 1999 9.996554 TTCGAATTACTTGTCACATATATGGAT 57.003 29.630 16.96 0.00 0.00 3.41
1961 2000 9.423061 TCGAATTACTTGTCACATATATGGATG 57.577 33.333 16.96 7.26 0.00 3.51
1962 2001 9.208022 CGAATTACTTGTCACATATATGGATGT 57.792 33.333 16.96 12.28 40.78 3.06
2002 2041 9.770097 TTAGCTCTCTAAATACATCCATTTCTG 57.230 33.333 0.00 0.00 32.20 3.02
2003 2042 8.027524 AGCTCTCTAAATACATCCATTTCTGA 57.972 34.615 0.00 0.00 30.84 3.27
2004 2043 8.149647 AGCTCTCTAAATACATCCATTTCTGAG 58.850 37.037 0.00 0.00 33.98 3.35
2005 2044 8.147058 GCTCTCTAAATACATCCATTTCTGAGA 58.853 37.037 0.00 10.76 36.44 3.27
2006 2045 9.474920 CTCTCTAAATACATCCATTTCTGAGAC 57.525 37.037 0.00 0.00 35.30 3.36
2007 2046 8.138074 TCTCTAAATACATCCATTTCTGAGACG 58.862 37.037 0.00 0.00 35.30 4.18
2008 2047 8.007405 TCTAAATACATCCATTTCTGAGACGA 57.993 34.615 0.00 0.00 30.84 4.20
2009 2048 8.138074 TCTAAATACATCCATTTCTGAGACGAG 58.862 37.037 0.00 0.00 30.84 4.18
2010 2049 5.860941 ATACATCCATTTCTGAGACGAGT 57.139 39.130 0.00 0.00 0.00 4.18
2011 2050 6.961360 ATACATCCATTTCTGAGACGAGTA 57.039 37.500 0.00 0.00 0.00 2.59
2012 2051 5.661056 ACATCCATTTCTGAGACGAGTAA 57.339 39.130 0.00 0.00 0.00 2.24
2013 2052 6.227298 ACATCCATTTCTGAGACGAGTAAT 57.773 37.500 0.00 0.00 0.00 1.89
2014 2053 6.644347 ACATCCATTTCTGAGACGAGTAATT 58.356 36.000 0.00 0.00 0.00 1.40
2015 2054 7.106239 ACATCCATTTCTGAGACGAGTAATTT 58.894 34.615 0.00 0.00 0.00 1.82
2016 2055 8.258007 ACATCCATTTCTGAGACGAGTAATTTA 58.742 33.333 0.00 0.00 0.00 1.40
2017 2056 8.759641 CATCCATTTCTGAGACGAGTAATTTAG 58.240 37.037 0.00 0.00 0.00 1.85
2018 2057 8.063200 TCCATTTCTGAGACGAGTAATTTAGA 57.937 34.615 0.00 0.00 0.00 2.10
2019 2058 8.528643 TCCATTTCTGAGACGAGTAATTTAGAA 58.471 33.333 0.00 0.00 0.00 2.10
2020 2059 8.596380 CCATTTCTGAGACGAGTAATTTAGAAC 58.404 37.037 0.00 0.00 0.00 3.01
2021 2060 7.792383 TTTCTGAGACGAGTAATTTAGAACG 57.208 36.000 0.00 0.00 0.00 3.95
2022 2061 6.732531 TCTGAGACGAGTAATTTAGAACGA 57.267 37.500 0.00 0.00 0.00 3.85
2023 2062 7.137490 TCTGAGACGAGTAATTTAGAACGAA 57.863 36.000 0.00 0.00 0.00 3.85
2024 2063 7.242079 TCTGAGACGAGTAATTTAGAACGAAG 58.758 38.462 0.00 0.00 0.00 3.79
2025 2064 6.320171 TGAGACGAGTAATTTAGAACGAAGG 58.680 40.000 0.00 0.00 0.00 3.46
2026 2065 5.648572 AGACGAGTAATTTAGAACGAAGGG 58.351 41.667 0.00 0.00 0.00 3.95
2027 2066 5.416952 AGACGAGTAATTTAGAACGAAGGGA 59.583 40.000 0.00 0.00 0.00 4.20
2028 2067 5.648572 ACGAGTAATTTAGAACGAAGGGAG 58.351 41.667 0.00 0.00 0.00 4.30
2029 2068 5.184671 ACGAGTAATTTAGAACGAAGGGAGT 59.815 40.000 0.00 0.00 0.00 3.85
2030 2069 6.375455 ACGAGTAATTTAGAACGAAGGGAGTA 59.625 38.462 0.00 0.00 0.00 2.59
2043 2082 6.814043 ACGAAGGGAGTAGTATAAAATGTCC 58.186 40.000 0.00 0.00 0.00 4.02
2056 2216 9.538508 AGTATAAAATGTCCGGTTGTCTATTAC 57.461 33.333 0.00 0.00 0.00 1.89
2077 2237 2.031683 CCACCAAACTTCGTCAAGTGAC 59.968 50.000 1.12 1.12 42.45 3.67
2080 2240 2.680841 CCAAACTTCGTCAAGTGACCAA 59.319 45.455 5.88 0.00 42.45 3.67
2086 2246 3.313012 TCGTCAAGTGACCAACCTATG 57.687 47.619 5.88 0.00 41.86 2.23
2087 2247 1.732259 CGTCAAGTGACCAACCTATGC 59.268 52.381 5.88 0.00 41.86 3.14
2088 2248 2.778299 GTCAAGTGACCAACCTATGCA 58.222 47.619 0.00 0.00 39.07 3.96
2089 2249 2.744202 GTCAAGTGACCAACCTATGCAG 59.256 50.000 0.00 0.00 39.07 4.41
2090 2250 4.422712 GTCAAGTGACCAACCTATGCAGG 61.423 52.174 0.00 0.00 42.33 4.85
2093 2253 1.557832 GTGACCAACCTATGCAGGGTA 59.442 52.381 13.50 0.00 41.28 3.69
2094 2254 1.557832 TGACCAACCTATGCAGGGTAC 59.442 52.381 13.50 7.48 41.28 3.34
2095 2255 0.539986 ACCAACCTATGCAGGGTACG 59.460 55.000 13.50 9.50 41.28 3.67
2096 2256 0.539986 CCAACCTATGCAGGGTACGT 59.460 55.000 13.50 0.00 41.28 3.57
2097 2257 1.758280 CCAACCTATGCAGGGTACGTA 59.242 52.381 13.50 0.00 41.28 3.57
2098 2258 2.482490 CCAACCTATGCAGGGTACGTAC 60.482 54.545 17.56 17.56 41.28 3.67
2099 2259 1.406539 AACCTATGCAGGGTACGTACG 59.593 52.381 18.98 15.01 41.49 3.67
2100 2260 0.313043 CCTATGCAGGGTACGTACGG 59.687 60.000 21.06 12.07 38.41 4.02
2101 2261 1.311859 CTATGCAGGGTACGTACGGA 58.688 55.000 21.06 8.59 0.00 4.69
2102 2262 1.677576 CTATGCAGGGTACGTACGGAA 59.322 52.381 21.06 4.15 0.00 4.30
2103 2263 1.117150 ATGCAGGGTACGTACGGAAT 58.883 50.000 21.06 8.68 0.00 3.01
2104 2264 0.896923 TGCAGGGTACGTACGGAATT 59.103 50.000 21.06 0.09 0.00 2.17
2105 2265 1.275856 TGCAGGGTACGTACGGAATTT 59.724 47.619 21.06 0.00 0.00 1.82
2106 2266 2.495270 TGCAGGGTACGTACGGAATTTA 59.505 45.455 21.06 0.00 0.00 1.40
2107 2267 2.860136 GCAGGGTACGTACGGAATTTAC 59.140 50.000 21.06 11.92 0.00 2.01
2108 2268 3.108144 CAGGGTACGTACGGAATTTACG 58.892 50.000 21.06 0.00 46.25 3.18
2109 2269 3.013921 AGGGTACGTACGGAATTTACGA 58.986 45.455 21.06 0.00 44.11 3.43
2110 2270 3.442273 AGGGTACGTACGGAATTTACGAA 59.558 43.478 21.06 0.00 44.11 3.85
2111 2271 3.791353 GGGTACGTACGGAATTTACGAAG 59.209 47.826 21.06 1.13 44.11 3.79
2112 2272 4.412207 GGTACGTACGGAATTTACGAAGT 58.588 43.478 21.06 6.97 44.11 3.01
2113 2273 4.857037 GGTACGTACGGAATTTACGAAGTT 59.143 41.667 21.06 0.00 44.11 2.66
2114 2274 6.025280 GGTACGTACGGAATTTACGAAGTTA 58.975 40.000 21.06 0.00 44.11 2.24
2115 2275 6.691388 GGTACGTACGGAATTTACGAAGTTAT 59.309 38.462 21.06 0.00 44.11 1.89
2116 2276 6.796629 ACGTACGGAATTTACGAAGTTATC 57.203 37.500 21.06 0.00 44.11 1.75
2130 2290 6.755461 CGAAGTTATCGTAGATGCTTCATT 57.245 37.500 19.03 0.00 46.52 2.57
2131 2291 6.576021 CGAAGTTATCGTAGATGCTTCATTG 58.424 40.000 19.03 7.97 46.52 2.82
2132 2292 6.199154 CGAAGTTATCGTAGATGCTTCATTGT 59.801 38.462 19.03 0.00 46.52 2.71
2133 2293 7.470289 AAGTTATCGTAGATGCTTCATTGTC 57.530 36.000 2.07 0.00 45.12 3.18
2134 2294 6.573434 AGTTATCGTAGATGCTTCATTGTCA 58.427 36.000 2.07 0.00 45.12 3.58
2135 2295 7.041721 AGTTATCGTAGATGCTTCATTGTCAA 58.958 34.615 2.07 0.00 45.12 3.18
2136 2296 7.712639 AGTTATCGTAGATGCTTCATTGTCAAT 59.287 33.333 2.07 0.00 45.12 2.57
2137 2297 5.723492 TCGTAGATGCTTCATTGTCAATG 57.277 39.130 17.95 17.95 40.28 2.82
2138 2298 5.418676 TCGTAGATGCTTCATTGTCAATGA 58.581 37.500 21.80 21.80 45.68 2.57
2155 2315 8.868522 TGTCAATGAAAATATCTCCTTTCACT 57.131 30.769 3.07 0.00 42.62 3.41
2156 2316 8.733458 TGTCAATGAAAATATCTCCTTTCACTG 58.267 33.333 3.07 3.40 42.62 3.66
2157 2317 8.950210 GTCAATGAAAATATCTCCTTTCACTGA 58.050 33.333 7.36 7.36 42.35 3.41
2158 2318 9.519191 TCAATGAAAATATCTCCTTTCACTGAA 57.481 29.630 8.53 0.00 41.91 3.02
2161 2321 7.820648 TGAAAATATCTCCTTTCACTGAAAGC 58.179 34.615 21.67 8.19 45.19 3.51
2162 2322 7.448161 TGAAAATATCTCCTTTCACTGAAAGCA 59.552 33.333 21.67 9.97 45.19 3.91
2163 2323 6.749923 AATATCTCCTTTCACTGAAAGCAC 57.250 37.500 21.67 0.00 45.19 4.40
2164 2324 3.558931 TCTCCTTTCACTGAAAGCACA 57.441 42.857 21.67 9.77 45.19 4.57
2165 2325 4.090761 TCTCCTTTCACTGAAAGCACAT 57.909 40.909 21.67 0.00 45.19 3.21
2166 2326 4.067896 TCTCCTTTCACTGAAAGCACATC 58.932 43.478 21.67 0.00 45.19 3.06
2167 2327 3.817084 CTCCTTTCACTGAAAGCACATCA 59.183 43.478 21.67 4.51 45.19 3.07
2168 2328 4.401022 TCCTTTCACTGAAAGCACATCAT 58.599 39.130 21.67 0.00 45.19 2.45
2169 2329 4.828939 TCCTTTCACTGAAAGCACATCATT 59.171 37.500 21.67 0.00 45.19 2.57
2170 2330 4.921515 CCTTTCACTGAAAGCACATCATTG 59.078 41.667 21.67 5.46 45.19 2.82
2171 2331 5.278610 CCTTTCACTGAAAGCACATCATTGA 60.279 40.000 21.67 3.45 45.19 2.57
2172 2332 5.771153 TTCACTGAAAGCACATCATTGAA 57.229 34.783 12.12 12.12 41.36 2.69
2173 2333 5.771153 TCACTGAAAGCACATCATTGAAA 57.229 34.783 4.67 0.00 37.60 2.69
2174 2334 6.146601 TCACTGAAAGCACATCATTGAAAA 57.853 33.333 4.67 0.00 37.60 2.29
2175 2335 6.751157 TCACTGAAAGCACATCATTGAAAAT 58.249 32.000 4.67 0.00 37.60 1.82
2176 2336 6.864685 TCACTGAAAGCACATCATTGAAAATC 59.135 34.615 4.67 0.00 37.60 2.17
2177 2337 6.866770 CACTGAAAGCACATCATTGAAAATCT 59.133 34.615 0.00 0.00 37.60 2.40
2178 2338 8.024865 CACTGAAAGCACATCATTGAAAATCTA 58.975 33.333 0.00 0.00 37.60 1.98
2179 2339 8.579006 ACTGAAAGCACATCATTGAAAATCTAA 58.421 29.630 0.00 0.00 37.60 2.10
2180 2340 9.414295 CTGAAAGCACATCATTGAAAATCTAAA 57.586 29.630 0.00 0.00 0.00 1.85
2181 2341 9.761504 TGAAAGCACATCATTGAAAATCTAAAA 57.238 25.926 0.00 0.00 0.00 1.52
2206 2366 9.533253 AATAAATACAGAAATAATGCAAGCACC 57.467 29.630 0.00 0.00 0.00 5.01
2207 2367 6.528537 AATACAGAAATAATGCAAGCACCA 57.471 33.333 0.00 0.00 0.00 4.17
2208 2368 4.445452 ACAGAAATAATGCAAGCACCAG 57.555 40.909 0.00 0.00 0.00 4.00
2209 2369 4.081406 ACAGAAATAATGCAAGCACCAGA 58.919 39.130 0.00 0.00 0.00 3.86
2210 2370 4.523943 ACAGAAATAATGCAAGCACCAGAA 59.476 37.500 0.00 0.00 0.00 3.02
2211 2371 4.860907 CAGAAATAATGCAAGCACCAGAAC 59.139 41.667 0.00 0.00 0.00 3.01
2212 2372 4.768968 AGAAATAATGCAAGCACCAGAACT 59.231 37.500 0.00 0.00 0.00 3.01
2213 2373 5.244626 AGAAATAATGCAAGCACCAGAACTT 59.755 36.000 0.00 0.00 0.00 2.66
2214 2374 6.434028 AGAAATAATGCAAGCACCAGAACTTA 59.566 34.615 0.00 0.00 0.00 2.24
2215 2375 6.588719 AATAATGCAAGCACCAGAACTTAA 57.411 33.333 0.00 0.00 0.00 1.85
2216 2376 4.935352 AATGCAAGCACCAGAACTTAAA 57.065 36.364 0.00 0.00 0.00 1.52
2217 2377 3.708563 TGCAAGCACCAGAACTTAAAC 57.291 42.857 0.00 0.00 0.00 2.01
2218 2378 2.360801 TGCAAGCACCAGAACTTAAACC 59.639 45.455 0.00 0.00 0.00 3.27
2219 2379 2.288213 GCAAGCACCAGAACTTAAACCC 60.288 50.000 0.00 0.00 0.00 4.11
2220 2380 3.222603 CAAGCACCAGAACTTAAACCCT 58.777 45.455 0.00 0.00 0.00 4.34
2221 2381 2.863809 AGCACCAGAACTTAAACCCTG 58.136 47.619 0.00 0.00 0.00 4.45
2222 2382 2.441750 AGCACCAGAACTTAAACCCTGA 59.558 45.455 0.00 0.00 0.00 3.86
2223 2383 2.552743 GCACCAGAACTTAAACCCTGAC 59.447 50.000 0.00 0.00 0.00 3.51
2224 2384 2.806244 CACCAGAACTTAAACCCTGACG 59.194 50.000 0.00 0.00 0.00 4.35
2225 2385 2.701951 ACCAGAACTTAAACCCTGACGA 59.298 45.455 0.00 0.00 0.00 4.20
2226 2386 3.244112 ACCAGAACTTAAACCCTGACGAG 60.244 47.826 0.00 0.00 0.00 4.18
2227 2387 2.737252 CAGAACTTAAACCCTGACGAGC 59.263 50.000 0.00 0.00 0.00 5.03
2228 2388 2.633481 AGAACTTAAACCCTGACGAGCT 59.367 45.455 0.00 0.00 0.00 4.09
2229 2389 2.457366 ACTTAAACCCTGACGAGCTG 57.543 50.000 0.00 0.00 0.00 4.24
2230 2390 1.968493 ACTTAAACCCTGACGAGCTGA 59.032 47.619 0.00 0.00 0.00 4.26
2231 2391 2.367567 ACTTAAACCCTGACGAGCTGAA 59.632 45.455 0.00 0.00 0.00 3.02
2232 2392 3.181458 ACTTAAACCCTGACGAGCTGAAA 60.181 43.478 0.00 0.00 0.00 2.69
2233 2393 2.341846 AAACCCTGACGAGCTGAAAA 57.658 45.000 0.00 0.00 0.00 2.29
2234 2394 2.568623 AACCCTGACGAGCTGAAAAT 57.431 45.000 0.00 0.00 0.00 1.82
2235 2395 3.695830 AACCCTGACGAGCTGAAAATA 57.304 42.857 0.00 0.00 0.00 1.40
2236 2396 2.973945 ACCCTGACGAGCTGAAAATAC 58.026 47.619 0.00 0.00 0.00 1.89
2237 2397 2.280628 CCCTGACGAGCTGAAAATACC 58.719 52.381 0.00 0.00 0.00 2.73
2238 2398 2.354704 CCCTGACGAGCTGAAAATACCA 60.355 50.000 0.00 0.00 0.00 3.25
2239 2399 2.673368 CCTGACGAGCTGAAAATACCAC 59.327 50.000 0.00 0.00 0.00 4.16
2240 2400 3.589988 CTGACGAGCTGAAAATACCACT 58.410 45.455 0.00 0.00 0.00 4.00
2241 2401 3.325870 TGACGAGCTGAAAATACCACTG 58.674 45.455 0.00 0.00 0.00 3.66
2242 2402 3.244078 TGACGAGCTGAAAATACCACTGT 60.244 43.478 0.00 0.00 0.00 3.55
2243 2403 3.326747 ACGAGCTGAAAATACCACTGTC 58.673 45.455 0.00 0.00 0.00 3.51
2244 2404 3.006967 ACGAGCTGAAAATACCACTGTCT 59.993 43.478 0.00 0.00 0.00 3.41
2245 2405 3.614616 CGAGCTGAAAATACCACTGTCTC 59.385 47.826 0.00 0.00 0.00 3.36
2246 2406 4.619394 CGAGCTGAAAATACCACTGTCTCT 60.619 45.833 0.00 0.00 0.00 3.10
2247 2407 4.826556 AGCTGAAAATACCACTGTCTCTC 58.173 43.478 0.00 0.00 0.00 3.20
2248 2408 4.530161 AGCTGAAAATACCACTGTCTCTCT 59.470 41.667 0.00 0.00 0.00 3.10
2249 2409 5.717178 AGCTGAAAATACCACTGTCTCTCTA 59.283 40.000 0.00 0.00 0.00 2.43
2250 2410 6.211584 AGCTGAAAATACCACTGTCTCTCTAA 59.788 38.462 0.00 0.00 0.00 2.10
2251 2411 6.311690 GCTGAAAATACCACTGTCTCTCTAAC 59.688 42.308 0.00 0.00 0.00 2.34
2252 2412 6.698380 TGAAAATACCACTGTCTCTCTAACC 58.302 40.000 0.00 0.00 0.00 2.85
2253 2413 6.269077 TGAAAATACCACTGTCTCTCTAACCA 59.731 38.462 0.00 0.00 0.00 3.67
2254 2414 6.875972 AAATACCACTGTCTCTCTAACCAT 57.124 37.500 0.00 0.00 0.00 3.55
2255 2415 6.875972 AATACCACTGTCTCTCTAACCATT 57.124 37.500 0.00 0.00 0.00 3.16
2256 2416 4.810191 ACCACTGTCTCTCTAACCATTC 57.190 45.455 0.00 0.00 0.00 2.67
2257 2417 4.160329 ACCACTGTCTCTCTAACCATTCA 58.840 43.478 0.00 0.00 0.00 2.57
2258 2418 4.593206 ACCACTGTCTCTCTAACCATTCAA 59.407 41.667 0.00 0.00 0.00 2.69
2259 2419 5.249393 ACCACTGTCTCTCTAACCATTCAAT 59.751 40.000 0.00 0.00 0.00 2.57
2260 2420 5.814705 CCACTGTCTCTCTAACCATTCAATC 59.185 44.000 0.00 0.00 0.00 2.67
2261 2421 6.401394 CACTGTCTCTCTAACCATTCAATCA 58.599 40.000 0.00 0.00 0.00 2.57
2262 2422 6.312426 CACTGTCTCTCTAACCATTCAATCAC 59.688 42.308 0.00 0.00 0.00 3.06
2263 2423 6.014242 ACTGTCTCTCTAACCATTCAATCACA 60.014 38.462 0.00 0.00 0.00 3.58
2264 2424 6.401394 TGTCTCTCTAACCATTCAATCACAG 58.599 40.000 0.00 0.00 0.00 3.66
2265 2425 6.211384 TGTCTCTCTAACCATTCAATCACAGA 59.789 38.462 0.00 0.00 0.00 3.41
2266 2426 7.093156 TGTCTCTCTAACCATTCAATCACAGAT 60.093 37.037 0.00 0.00 0.00 2.90
2267 2427 7.768120 GTCTCTCTAACCATTCAATCACAGATT 59.232 37.037 0.00 0.00 0.00 2.40
2268 2428 7.767659 TCTCTCTAACCATTCAATCACAGATTG 59.232 37.037 12.33 12.33 0.00 2.67
2269 2429 6.825213 TCTCTAACCATTCAATCACAGATTGG 59.175 38.462 16.97 6.84 40.56 3.16
2270 2430 6.484288 TCTAACCATTCAATCACAGATTGGT 58.516 36.000 16.97 7.40 46.21 3.67
2272 2432 5.649782 ACCATTCAATCACAGATTGGTTC 57.350 39.130 16.97 0.00 43.48 3.62
2273 2433 5.078949 ACCATTCAATCACAGATTGGTTCA 58.921 37.500 16.97 0.00 43.48 3.18
2274 2434 5.047802 ACCATTCAATCACAGATTGGTTCAC 60.048 40.000 16.97 0.00 43.48 3.18
2275 2435 5.047872 CCATTCAATCACAGATTGGTTCACA 60.048 40.000 16.97 0.00 33.81 3.58
2276 2436 6.448852 CATTCAATCACAGATTGGTTCACAA 58.551 36.000 16.97 6.01 44.54 3.33
2277 2437 6.462552 TTCAATCACAGATTGGTTCACAAA 57.537 33.333 16.97 2.84 43.46 2.83
2278 2438 6.653526 TCAATCACAGATTGGTTCACAAAT 57.346 33.333 16.97 0.00 43.46 2.32
2279 2439 7.757941 TCAATCACAGATTGGTTCACAAATA 57.242 32.000 16.97 0.00 43.46 1.40
2280 2440 8.175925 TCAATCACAGATTGGTTCACAAATAA 57.824 30.769 16.97 0.00 43.46 1.40
2281 2441 8.805175 TCAATCACAGATTGGTTCACAAATAAT 58.195 29.630 16.97 0.00 43.46 1.28
2282 2442 8.865978 CAATCACAGATTGGTTCACAAATAATG 58.134 33.333 11.00 0.00 43.46 1.90
2283 2443 6.389091 TCACAGATTGGTTCACAAATAATGC 58.611 36.000 0.00 0.00 43.46 3.56
2284 2444 6.015603 TCACAGATTGGTTCACAAATAATGCA 60.016 34.615 0.00 0.00 43.46 3.96
2285 2445 6.645827 CACAGATTGGTTCACAAATAATGCAA 59.354 34.615 0.00 0.00 43.46 4.08
2286 2446 6.869913 ACAGATTGGTTCACAAATAATGCAAG 59.130 34.615 0.00 0.00 43.46 4.01
2287 2447 5.870978 AGATTGGTTCACAAATAATGCAAGC 59.129 36.000 0.00 0.00 43.46 4.01
2288 2448 4.597404 TGGTTCACAAATAATGCAAGCA 57.403 36.364 0.00 0.00 32.89 3.91
2289 2449 4.305769 TGGTTCACAAATAATGCAAGCAC 58.694 39.130 0.00 0.00 31.29 4.40
2290 2450 3.679502 GGTTCACAAATAATGCAAGCACC 59.320 43.478 0.00 0.00 0.00 5.01
2291 2451 4.305769 GTTCACAAATAATGCAAGCACCA 58.694 39.130 0.00 0.00 0.00 4.17
2292 2452 4.177165 TCACAAATAATGCAAGCACCAG 57.823 40.909 0.00 0.00 0.00 4.00
2293 2453 3.825585 TCACAAATAATGCAAGCACCAGA 59.174 39.130 0.00 0.00 0.00 3.86
2294 2454 4.280425 TCACAAATAATGCAAGCACCAGAA 59.720 37.500 0.00 0.00 0.00 3.02
2295 2455 4.386652 CACAAATAATGCAAGCACCAGAAC 59.613 41.667 0.00 0.00 0.00 3.01
2296 2456 4.281688 ACAAATAATGCAAGCACCAGAACT 59.718 37.500 0.00 0.00 0.00 3.01
2297 2457 5.221501 ACAAATAATGCAAGCACCAGAACTT 60.222 36.000 0.00 0.00 0.00 2.66
2298 2458 6.015519 ACAAATAATGCAAGCACCAGAACTTA 60.016 34.615 0.00 0.00 0.00 2.24
2299 2459 6.588719 AATAATGCAAGCACCAGAACTTAA 57.411 33.333 0.00 0.00 0.00 1.85
2300 2460 4.935352 AATGCAAGCACCAGAACTTAAA 57.065 36.364 0.00 0.00 0.00 1.52
2301 2461 3.708563 TGCAAGCACCAGAACTTAAAC 57.291 42.857 0.00 0.00 0.00 2.01
2302 2462 2.360801 TGCAAGCACCAGAACTTAAACC 59.639 45.455 0.00 0.00 0.00 3.27
2303 2463 2.288213 GCAAGCACCAGAACTTAAACCC 60.288 50.000 0.00 0.00 0.00 4.11
2304 2464 3.222603 CAAGCACCAGAACTTAAACCCT 58.777 45.455 0.00 0.00 0.00 4.34
2305 2465 2.863809 AGCACCAGAACTTAAACCCTG 58.136 47.619 0.00 0.00 0.00 4.45
2306 2466 2.441750 AGCACCAGAACTTAAACCCTGA 59.558 45.455 0.00 0.00 0.00 3.86
2307 2467 2.552743 GCACCAGAACTTAAACCCTGAC 59.447 50.000 0.00 0.00 0.00 3.51
2308 2468 2.806244 CACCAGAACTTAAACCCTGACG 59.194 50.000 0.00 0.00 0.00 4.35
2309 2469 2.701951 ACCAGAACTTAAACCCTGACGA 59.298 45.455 0.00 0.00 0.00 4.20
2310 2470 3.244112 ACCAGAACTTAAACCCTGACGAG 60.244 47.826 0.00 0.00 0.00 4.18
2311 2471 2.737252 CAGAACTTAAACCCTGACGAGC 59.263 50.000 0.00 0.00 0.00 5.03
2312 2472 2.633481 AGAACTTAAACCCTGACGAGCT 59.367 45.455 0.00 0.00 0.00 4.09
2313 2473 2.457366 ACTTAAACCCTGACGAGCTG 57.543 50.000 0.00 0.00 0.00 4.24
2314 2474 1.968493 ACTTAAACCCTGACGAGCTGA 59.032 47.619 0.00 0.00 0.00 4.26
2315 2475 2.367567 ACTTAAACCCTGACGAGCTGAA 59.632 45.455 0.00 0.00 0.00 3.02
2316 2476 3.181458 ACTTAAACCCTGACGAGCTGAAA 60.181 43.478 0.00 0.00 0.00 2.69
2317 2477 2.341846 AAACCCTGACGAGCTGAAAA 57.658 45.000 0.00 0.00 0.00 2.29
2318 2478 2.568623 AACCCTGACGAGCTGAAAAT 57.431 45.000 0.00 0.00 0.00 1.82
2319 2479 3.695830 AACCCTGACGAGCTGAAAATA 57.304 42.857 0.00 0.00 0.00 1.40
2320 2480 3.914426 ACCCTGACGAGCTGAAAATAT 57.086 42.857 0.00 0.00 0.00 1.28
2321 2481 3.798202 ACCCTGACGAGCTGAAAATATC 58.202 45.455 0.00 0.00 0.00 1.63
2322 2482 3.197766 ACCCTGACGAGCTGAAAATATCA 59.802 43.478 0.00 0.00 36.38 2.15
2323 2483 4.141620 ACCCTGACGAGCTGAAAATATCAT 60.142 41.667 0.00 0.00 37.44 2.45
2324 2484 4.818546 CCCTGACGAGCTGAAAATATCATT 59.181 41.667 0.00 0.00 37.44 2.57
2325 2485 5.277683 CCCTGACGAGCTGAAAATATCATTG 60.278 44.000 0.00 0.00 37.44 2.82
2326 2486 5.295292 CCTGACGAGCTGAAAATATCATTGT 59.705 40.000 0.00 0.00 37.44 2.71
2327 2487 6.349973 TGACGAGCTGAAAATATCATTGTC 57.650 37.500 0.00 0.00 37.44 3.18
2328 2488 5.294306 TGACGAGCTGAAAATATCATTGTCC 59.706 40.000 0.00 0.00 37.44 4.02
2329 2489 4.576463 ACGAGCTGAAAATATCATTGTCCC 59.424 41.667 0.00 0.00 37.44 4.46
2330 2490 4.818546 CGAGCTGAAAATATCATTGTCCCT 59.181 41.667 0.00 0.00 37.44 4.20
2331 2491 5.049818 CGAGCTGAAAATATCATTGTCCCTC 60.050 44.000 0.00 0.00 37.44 4.30
2332 2492 6.011122 AGCTGAAAATATCATTGTCCCTCT 57.989 37.500 0.00 0.00 37.44 3.69
2333 2493 7.141758 AGCTGAAAATATCATTGTCCCTCTA 57.858 36.000 0.00 0.00 37.44 2.43
2334 2494 7.577303 AGCTGAAAATATCATTGTCCCTCTAA 58.423 34.615 0.00 0.00 37.44 2.10
2335 2495 7.500559 AGCTGAAAATATCATTGTCCCTCTAAC 59.499 37.037 0.00 0.00 37.44 2.34
2336 2496 7.255277 GCTGAAAATATCATTGTCCCTCTAACC 60.255 40.741 0.00 0.00 37.44 2.85
2337 2497 7.638444 TGAAAATATCATTGTCCCTCTAACCA 58.362 34.615 0.00 0.00 31.50 3.67
2338 2498 8.281531 TGAAAATATCATTGTCCCTCTAACCAT 58.718 33.333 0.00 0.00 31.50 3.55
2339 2499 9.136323 GAAAATATCATTGTCCCTCTAACCATT 57.864 33.333 0.00 0.00 0.00 3.16
2340 2500 8.697507 AAATATCATTGTCCCTCTAACCATTC 57.302 34.615 0.00 0.00 0.00 2.67
2341 2501 5.715439 ATCATTGTCCCTCTAACCATTCA 57.285 39.130 0.00 0.00 0.00 2.57
2342 2502 5.512942 TCATTGTCCCTCTAACCATTCAA 57.487 39.130 0.00 0.00 0.00 2.69
2343 2503 5.253330 TCATTGTCCCTCTAACCATTCAAC 58.747 41.667 0.00 0.00 0.00 3.18
2344 2504 3.713826 TGTCCCTCTAACCATTCAACC 57.286 47.619 0.00 0.00 0.00 3.77
2345 2505 2.983192 TGTCCCTCTAACCATTCAACCA 59.017 45.455 0.00 0.00 0.00 3.67
2346 2506 3.244770 TGTCCCTCTAACCATTCAACCAC 60.245 47.826 0.00 0.00 0.00 4.16
2347 2507 2.983192 TCCCTCTAACCATTCAACCACA 59.017 45.455 0.00 0.00 0.00 4.17
2348 2508 3.591527 TCCCTCTAACCATTCAACCACAT 59.408 43.478 0.00 0.00 0.00 3.21
2349 2509 3.696051 CCCTCTAACCATTCAACCACATG 59.304 47.826 0.00 0.00 0.00 3.21
2350 2510 4.335416 CCTCTAACCATTCAACCACATGT 58.665 43.478 0.00 0.00 0.00 3.21
2351 2511 4.766891 CCTCTAACCATTCAACCACATGTT 59.233 41.667 0.00 0.00 37.80 2.71
2373 2630 5.235850 TGGTTCACCACACACATTATAGT 57.764 39.130 0.00 0.00 42.01 2.12
2389 2646 5.818136 TTATAGTTGGCATTGCAGAGAAC 57.182 39.130 11.39 7.35 0.00 3.01
2500 2759 7.148154 GGATAGCTACTCTGTATGTCTGTATGG 60.148 44.444 0.00 0.00 0.00 2.74
2501 2760 5.450453 AGCTACTCTGTATGTCTGTATGGT 58.550 41.667 0.00 0.00 0.00 3.55
2502 2761 6.602278 AGCTACTCTGTATGTCTGTATGGTA 58.398 40.000 0.00 0.00 0.00 3.25
2503 2762 7.061054 AGCTACTCTGTATGTCTGTATGGTAA 58.939 38.462 0.00 0.00 0.00 2.85
2504 2763 7.726291 AGCTACTCTGTATGTCTGTATGGTAAT 59.274 37.037 0.00 0.00 0.00 1.89
2505 2764 7.810282 GCTACTCTGTATGTCTGTATGGTAATG 59.190 40.741 0.00 0.00 0.00 1.90
2532 2791 2.726821 ACTCATGGCATTTGGGTACAG 58.273 47.619 0.00 0.00 0.00 2.74
2564 2823 3.430218 GTCAGTCGCAGCATAATCATACC 59.570 47.826 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.447833 GTTTTTGTGTCAGATTAATCGTATCCA 58.552 33.333 9.78 3.45 0.00 3.41
1 2 7.634817 CGTTTTTGTGTCAGATTAATCGTATCC 59.365 37.037 9.78 1.01 0.00 2.59
2 3 8.377681 TCGTTTTTGTGTCAGATTAATCGTATC 58.622 33.333 9.78 3.55 0.00 2.24
3 4 8.246908 TCGTTTTTGTGTCAGATTAATCGTAT 57.753 30.769 9.78 0.00 0.00 3.06
4 5 7.595875 TCTCGTTTTTGTGTCAGATTAATCGTA 59.404 33.333 9.78 0.00 0.00 3.43
5 6 6.422701 TCTCGTTTTTGTGTCAGATTAATCGT 59.577 34.615 9.78 0.00 0.00 3.73
6 7 6.817396 TCTCGTTTTTGTGTCAGATTAATCG 58.183 36.000 9.78 5.54 0.00 3.34
7 8 8.230486 ACATCTCGTTTTTGTGTCAGATTAATC 58.770 33.333 7.41 7.41 0.00 1.75
8 9 8.017373 CACATCTCGTTTTTGTGTCAGATTAAT 58.983 33.333 0.00 0.00 36.77 1.40
9 10 7.351981 CACATCTCGTTTTTGTGTCAGATTAA 58.648 34.615 0.00 0.00 36.77 1.40
10 11 6.887368 CACATCTCGTTTTTGTGTCAGATTA 58.113 36.000 0.00 0.00 36.77 1.75
11 12 5.751680 CACATCTCGTTTTTGTGTCAGATT 58.248 37.500 0.00 0.00 36.77 2.40
12 13 5.348418 CACATCTCGTTTTTGTGTCAGAT 57.652 39.130 0.00 0.00 36.77 2.90
13 14 4.794248 CACATCTCGTTTTTGTGTCAGA 57.206 40.909 0.00 0.00 36.77 3.27
18 19 3.288242 CGGAACACATCTCGTTTTTGTG 58.712 45.455 1.02 1.02 44.85 3.33
19 20 2.286772 GCGGAACACATCTCGTTTTTGT 60.287 45.455 0.00 0.00 0.00 2.83
20 21 2.032030 AGCGGAACACATCTCGTTTTTG 60.032 45.455 0.00 0.00 0.00 2.44
21 22 2.032030 CAGCGGAACACATCTCGTTTTT 60.032 45.455 0.00 0.00 0.00 1.94
22 23 1.531149 CAGCGGAACACATCTCGTTTT 59.469 47.619 0.00 0.00 0.00 2.43
23 24 1.148310 CAGCGGAACACATCTCGTTT 58.852 50.000 0.00 0.00 0.00 3.60
24 25 0.670546 CCAGCGGAACACATCTCGTT 60.671 55.000 0.00 0.00 0.00 3.85
25 26 1.079819 CCAGCGGAACACATCTCGT 60.080 57.895 0.00 0.00 0.00 4.18
26 27 1.811266 CCCAGCGGAACACATCTCG 60.811 63.158 0.00 0.00 0.00 4.04
27 28 0.741221 GACCCAGCGGAACACATCTC 60.741 60.000 0.00 0.00 0.00 2.75
28 29 1.296715 GACCCAGCGGAACACATCT 59.703 57.895 0.00 0.00 0.00 2.90
29 30 1.745489 GGACCCAGCGGAACACATC 60.745 63.158 0.00 0.00 0.00 3.06
30 31 1.779061 AAGGACCCAGCGGAACACAT 61.779 55.000 0.00 0.00 0.00 3.21
31 32 2.391724 GAAGGACCCAGCGGAACACA 62.392 60.000 0.00 0.00 0.00 3.72
32 33 1.671379 GAAGGACCCAGCGGAACAC 60.671 63.158 0.00 0.00 0.00 3.32
33 34 2.144078 TGAAGGACCCAGCGGAACA 61.144 57.895 0.00 0.00 0.00 3.18
34 35 1.671379 GTGAAGGACCCAGCGGAAC 60.671 63.158 0.00 0.00 0.00 3.62
35 36 2.111999 CTGTGAAGGACCCAGCGGAA 62.112 60.000 0.00 0.00 0.00 4.30
36 37 2.525629 TGTGAAGGACCCAGCGGA 60.526 61.111 0.00 0.00 0.00 5.54
37 38 2.046892 CTGTGAAGGACCCAGCGG 60.047 66.667 0.00 0.00 0.00 5.52
38 39 1.374758 GACTGTGAAGGACCCAGCG 60.375 63.158 0.00 0.00 0.00 5.18
39 40 1.374758 CGACTGTGAAGGACCCAGC 60.375 63.158 0.00 0.00 0.00 4.85
116 118 3.769300 TCAGTGGAATCTTCGATCTCCAA 59.231 43.478 0.96 0.00 39.62 3.53
256 259 3.243201 GCACTGGAAAAAGAAGTGTCTGG 60.243 47.826 4.18 0.00 42.65 3.86
288 291 8.682936 ATTTAGATGATTGACCATGTAGAACC 57.317 34.615 0.00 0.00 0.00 3.62
309 312 7.709613 GGAAGGACAAAGATTAGACGCTATTTA 59.290 37.037 0.00 0.00 0.00 1.40
357 360 3.118038 GGAATACCATCCAGCCAGTAACA 60.118 47.826 0.00 0.00 39.42 2.41
360 363 3.060479 AGGAATACCATCCAGCCAGTA 57.940 47.619 0.00 0.00 42.27 2.74
534 538 0.887933 GGTTGGAACTCCGTACGGTA 59.112 55.000 32.16 18.40 39.43 4.02
560 564 3.314913 CCAATTGCATACACATCGCCTTA 59.685 43.478 0.00 0.00 0.00 2.69
567 571 2.615447 CTCGCTCCAATTGCATACACAT 59.385 45.455 0.00 0.00 0.00 3.21
639 643 1.355381 TGTTGAAGGATGTGATGGGCT 59.645 47.619 0.00 0.00 0.00 5.19
681 685 4.757657 ACATATCGGCACTAGTAGAGTCAG 59.242 45.833 3.59 0.00 35.64 3.51
766 771 1.484653 TCATGATGAGTAACACCCGGG 59.515 52.381 22.25 22.25 0.00 5.73
847 852 4.644163 TTTCGGAAGATGGGAAGGTTTA 57.356 40.909 0.00 0.00 41.60 2.01
848 853 3.518992 TTTCGGAAGATGGGAAGGTTT 57.481 42.857 0.00 0.00 41.60 3.27
849 854 3.518992 TTTTCGGAAGATGGGAAGGTT 57.481 42.857 0.00 0.00 41.60 3.50
850 855 3.518992 TTTTTCGGAAGATGGGAAGGT 57.481 42.857 0.00 0.00 41.60 3.50
872 877 2.124695 CAACCGCCTTCCTAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
897 902 1.079127 GCGCTGGCTGTAGGAGAAA 60.079 57.895 0.00 0.00 35.83 2.52
899 904 2.679996 TGCGCTGGCTGTAGGAGA 60.680 61.111 9.73 0.00 40.82 3.71
900 905 2.202851 CTGCGCTGGCTGTAGGAG 60.203 66.667 9.73 0.00 40.82 3.69
993 1010 2.468831 GAAGGTCGCATCATGAGAGAC 58.531 52.381 15.50 15.50 0.00 3.36
1009 1026 2.050691 CGATTTGTTGGTTTGCGAAGG 58.949 47.619 0.00 0.00 0.00 3.46
1479 1502 1.068585 GGAGTTGGTTGTCGTCGGT 59.931 57.895 0.00 0.00 0.00 4.69
1534 1557 1.000955 GAACCTGATGACACGGACACT 59.999 52.381 0.00 0.00 0.00 3.55
1536 1559 0.320374 GGAACCTGATGACACGGACA 59.680 55.000 0.00 0.00 0.00 4.02
1563 1586 4.468689 GCCCTCCTGCACCCGTAC 62.469 72.222 0.00 0.00 0.00 3.67
1689 1715 1.142748 GGTGGCAGAGGATCAGACG 59.857 63.158 0.00 0.00 37.82 4.18
1789 1816 2.365941 TGTTCATGACACCTCAACCGTA 59.634 45.455 0.00 0.00 32.00 4.02
1917 1956 6.769134 ATTCGAAACGGAGGGAATATTTTT 57.231 33.333 0.00 0.00 0.00 1.94
1918 1957 6.769134 AATTCGAAACGGAGGGAATATTTT 57.231 33.333 0.00 0.00 0.00 1.82
1919 1958 7.052248 AGTAATTCGAAACGGAGGGAATATTT 58.948 34.615 0.00 0.00 0.00 1.40
1920 1959 6.589135 AGTAATTCGAAACGGAGGGAATATT 58.411 36.000 0.00 0.00 0.00 1.28
1921 1960 6.170846 AGTAATTCGAAACGGAGGGAATAT 57.829 37.500 0.00 0.00 0.00 1.28
1922 1961 5.603170 AGTAATTCGAAACGGAGGGAATA 57.397 39.130 0.00 0.00 0.00 1.75
1923 1962 4.482952 AGTAATTCGAAACGGAGGGAAT 57.517 40.909 0.00 0.00 0.00 3.01
1924 1963 3.967332 AGTAATTCGAAACGGAGGGAA 57.033 42.857 0.00 0.00 0.00 3.97
1925 1964 3.007182 ACAAGTAATTCGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
1926 1965 3.332034 ACAAGTAATTCGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
1927 1966 3.991773 TGACAAGTAATTCGAAACGGAGG 59.008 43.478 0.00 0.00 0.00 4.30
1928 1967 4.446385 TGTGACAAGTAATTCGAAACGGAG 59.554 41.667 0.00 0.00 0.00 4.63
1929 1968 4.370049 TGTGACAAGTAATTCGAAACGGA 58.630 39.130 0.00 0.00 0.00 4.69
1930 1969 4.718858 TGTGACAAGTAATTCGAAACGG 57.281 40.909 0.00 0.00 0.00 4.44
1931 1970 9.567917 CATATATGTGACAAGTAATTCGAAACG 57.432 33.333 0.00 0.00 0.00 3.60
1932 1971 9.864034 CCATATATGTGACAAGTAATTCGAAAC 57.136 33.333 11.73 0.00 0.00 2.78
1933 1972 9.825109 TCCATATATGTGACAAGTAATTCGAAA 57.175 29.630 11.73 0.00 0.00 3.46
1934 1973 9.996554 ATCCATATATGTGACAAGTAATTCGAA 57.003 29.630 11.73 0.00 0.00 3.71
1935 1974 9.423061 CATCCATATATGTGACAAGTAATTCGA 57.577 33.333 11.73 0.00 0.00 3.71
1936 1975 9.208022 ACATCCATATATGTGACAAGTAATTCG 57.792 33.333 11.73 0.00 38.65 3.34
1976 2015 9.770097 CAGAAATGGATGTATTTAGAGAGCTAA 57.230 33.333 0.00 0.00 34.88 3.09
1977 2016 9.147732 TCAGAAATGGATGTATTTAGAGAGCTA 57.852 33.333 0.00 0.00 30.78 3.32
1978 2017 8.027524 TCAGAAATGGATGTATTTAGAGAGCT 57.972 34.615 0.00 0.00 30.78 4.09
1979 2018 8.147058 TCTCAGAAATGGATGTATTTAGAGAGC 58.853 37.037 0.00 0.00 36.92 4.09
1980 2019 9.474920 GTCTCAGAAATGGATGTATTTAGAGAG 57.525 37.037 12.30 7.70 39.41 3.20
1981 2020 8.138074 CGTCTCAGAAATGGATGTATTTAGAGA 58.862 37.037 0.00 0.00 38.08 3.10
1982 2021 8.138074 TCGTCTCAGAAATGGATGTATTTAGAG 58.862 37.037 0.00 0.00 35.62 2.43
1983 2022 8.007405 TCGTCTCAGAAATGGATGTATTTAGA 57.993 34.615 0.00 0.00 30.78 2.10
1984 2023 7.923344 ACTCGTCTCAGAAATGGATGTATTTAG 59.077 37.037 0.00 0.00 30.78 1.85
1985 2024 7.782049 ACTCGTCTCAGAAATGGATGTATTTA 58.218 34.615 0.00 0.00 30.78 1.40
1986 2025 6.644347 ACTCGTCTCAGAAATGGATGTATTT 58.356 36.000 0.00 0.00 33.19 1.40
1987 2026 6.227298 ACTCGTCTCAGAAATGGATGTATT 57.773 37.500 0.00 0.00 0.00 1.89
1988 2027 5.860941 ACTCGTCTCAGAAATGGATGTAT 57.139 39.130 0.00 0.00 0.00 2.29
1989 2028 6.769134 TTACTCGTCTCAGAAATGGATGTA 57.231 37.500 0.00 0.00 0.00 2.29
1990 2029 5.661056 TTACTCGTCTCAGAAATGGATGT 57.339 39.130 0.00 0.00 0.00 3.06
1991 2030 7.545362 AAATTACTCGTCTCAGAAATGGATG 57.455 36.000 0.00 0.00 0.00 3.51
1992 2031 8.696374 TCTAAATTACTCGTCTCAGAAATGGAT 58.304 33.333 0.00 0.00 0.00 3.41
1993 2032 8.063200 TCTAAATTACTCGTCTCAGAAATGGA 57.937 34.615 0.00 0.00 0.00 3.41
1994 2033 8.596380 GTTCTAAATTACTCGTCTCAGAAATGG 58.404 37.037 0.00 0.00 0.00 3.16
1995 2034 8.314635 CGTTCTAAATTACTCGTCTCAGAAATG 58.685 37.037 0.00 0.00 0.00 2.32
1996 2035 8.242053 TCGTTCTAAATTACTCGTCTCAGAAAT 58.758 33.333 0.00 0.00 0.00 2.17
1997 2036 7.587629 TCGTTCTAAATTACTCGTCTCAGAAA 58.412 34.615 0.00 0.00 0.00 2.52
1998 2037 7.137490 TCGTTCTAAATTACTCGTCTCAGAA 57.863 36.000 0.00 0.00 0.00 3.02
1999 2038 6.732531 TCGTTCTAAATTACTCGTCTCAGA 57.267 37.500 0.00 0.00 0.00 3.27
2000 2039 6.469595 CCTTCGTTCTAAATTACTCGTCTCAG 59.530 42.308 0.00 0.00 0.00 3.35
2001 2040 6.320171 CCTTCGTTCTAAATTACTCGTCTCA 58.680 40.000 0.00 0.00 0.00 3.27
2002 2041 5.742926 CCCTTCGTTCTAAATTACTCGTCTC 59.257 44.000 0.00 0.00 0.00 3.36
2003 2042 5.416952 TCCCTTCGTTCTAAATTACTCGTCT 59.583 40.000 0.00 0.00 0.00 4.18
2004 2043 5.644644 TCCCTTCGTTCTAAATTACTCGTC 58.355 41.667 0.00 0.00 0.00 4.20
2005 2044 5.184671 ACTCCCTTCGTTCTAAATTACTCGT 59.815 40.000 0.00 0.00 0.00 4.18
2006 2045 5.648572 ACTCCCTTCGTTCTAAATTACTCG 58.351 41.667 0.00 0.00 0.00 4.18
2007 2046 7.770201 ACTACTCCCTTCGTTCTAAATTACTC 58.230 38.462 0.00 0.00 0.00 2.59
2008 2047 7.715266 ACTACTCCCTTCGTTCTAAATTACT 57.285 36.000 0.00 0.00 0.00 2.24
2015 2054 9.193806 ACATTTTATACTACTCCCTTCGTTCTA 57.806 33.333 0.00 0.00 0.00 2.10
2016 2055 8.075761 ACATTTTATACTACTCCCTTCGTTCT 57.924 34.615 0.00 0.00 0.00 3.01
2017 2056 7.437565 GGACATTTTATACTACTCCCTTCGTTC 59.562 40.741 0.00 0.00 0.00 3.95
2018 2057 7.270779 GGACATTTTATACTACTCCCTTCGTT 58.729 38.462 0.00 0.00 0.00 3.85
2019 2058 6.460676 CGGACATTTTATACTACTCCCTTCGT 60.461 42.308 0.00 0.00 0.00 3.85
2020 2059 5.919141 CGGACATTTTATACTACTCCCTTCG 59.081 44.000 0.00 0.00 0.00 3.79
2021 2060 6.183360 ACCGGACATTTTATACTACTCCCTTC 60.183 42.308 9.46 0.00 0.00 3.46
2022 2061 5.664457 ACCGGACATTTTATACTACTCCCTT 59.336 40.000 9.46 0.00 0.00 3.95
2023 2062 5.214293 ACCGGACATTTTATACTACTCCCT 58.786 41.667 9.46 0.00 0.00 4.20
2024 2063 5.541953 ACCGGACATTTTATACTACTCCC 57.458 43.478 9.46 0.00 0.00 4.30
2025 2064 6.343703 ACAACCGGACATTTTATACTACTCC 58.656 40.000 9.46 0.00 0.00 3.85
2026 2065 7.263496 AGACAACCGGACATTTTATACTACTC 58.737 38.462 9.46 0.00 0.00 2.59
2027 2066 7.179076 AGACAACCGGACATTTTATACTACT 57.821 36.000 9.46 0.00 0.00 2.57
2028 2067 9.538508 AATAGACAACCGGACATTTTATACTAC 57.461 33.333 9.46 0.00 0.00 2.73
2030 2069 9.538508 GTAATAGACAACCGGACATTTTATACT 57.461 33.333 9.46 0.00 0.00 2.12
2077 2237 0.539986 ACGTACCCTGCATAGGTTGG 59.460 55.000 13.34 8.64 42.96 3.77
2080 2240 1.027357 CGTACGTACCCTGCATAGGT 58.973 55.000 19.67 12.76 42.96 3.08
2086 2246 2.014335 AAATTCCGTACGTACCCTGC 57.986 50.000 19.67 0.00 0.00 4.85
2087 2247 3.108144 CGTAAATTCCGTACGTACCCTG 58.892 50.000 19.67 8.91 39.54 4.45
2088 2248 3.013921 TCGTAAATTCCGTACGTACCCT 58.986 45.455 19.67 0.00 43.71 4.34
2089 2249 3.414549 TCGTAAATTCCGTACGTACCC 57.585 47.619 19.67 0.00 43.71 3.69
2090 2250 4.412207 ACTTCGTAAATTCCGTACGTACC 58.588 43.478 19.67 2.46 43.71 3.34
2093 2253 5.452302 CGATAACTTCGTAAATTCCGTACGT 59.548 40.000 15.21 0.00 43.71 3.57
2094 2254 5.872326 CGATAACTTCGTAAATTCCGTACG 58.128 41.667 8.69 8.69 44.45 3.67
2108 2268 7.222805 TGACAATGAAGCATCTACGATAACTTC 59.777 37.037 0.00 9.88 35.28 3.01
2109 2269 7.041721 TGACAATGAAGCATCTACGATAACTT 58.958 34.615 0.00 0.00 0.00 2.66
2110 2270 6.573434 TGACAATGAAGCATCTACGATAACT 58.427 36.000 0.00 0.00 0.00 2.24
2111 2271 6.828502 TGACAATGAAGCATCTACGATAAC 57.171 37.500 0.00 0.00 0.00 1.89
2112 2272 7.710475 TCATTGACAATGAAGCATCTACGATAA 59.290 33.333 25.14 0.39 44.47 1.75
2113 2273 7.209475 TCATTGACAATGAAGCATCTACGATA 58.791 34.615 25.14 0.99 44.47 2.92
2114 2274 6.051074 TCATTGACAATGAAGCATCTACGAT 58.949 36.000 25.14 0.00 44.47 3.73
2115 2275 5.418676 TCATTGACAATGAAGCATCTACGA 58.581 37.500 25.14 1.59 44.47 3.43
2116 2276 5.723492 TCATTGACAATGAAGCATCTACG 57.277 39.130 25.14 0.00 44.47 3.51
2129 2289 9.300681 AGTGAAAGGAGATATTTTCATTGACAA 57.699 29.630 4.13 0.00 36.08 3.18
2130 2290 8.733458 CAGTGAAAGGAGATATTTTCATTGACA 58.267 33.333 13.69 5.22 40.95 3.58
2131 2291 8.950210 TCAGTGAAAGGAGATATTTTCATTGAC 58.050 33.333 16.01 0.00 41.72 3.18
2132 2292 9.519191 TTCAGTGAAAGGAGATATTTTCATTGA 57.481 29.630 16.01 16.01 43.46 2.57
2135 2295 8.465201 GCTTTCAGTGAAAGGAGATATTTTCAT 58.535 33.333 35.24 0.00 46.21 2.57
2136 2296 7.448161 TGCTTTCAGTGAAAGGAGATATTTTCA 59.552 33.333 35.24 22.23 46.21 2.69
2137 2297 7.820648 TGCTTTCAGTGAAAGGAGATATTTTC 58.179 34.615 35.24 20.44 46.21 2.29
2138 2298 7.765695 TGCTTTCAGTGAAAGGAGATATTTT 57.234 32.000 35.24 0.00 46.21 1.82
2139 2299 7.395489 ATGTGCTTTCAGTGAAAGGAGATATTT 59.605 33.333 33.92 19.74 46.11 1.40
2140 2300 6.888632 ATGTGCTTTCAGTGAAAGGAGATATT 59.111 34.615 33.92 20.02 46.11 1.28
2141 2301 6.421485 ATGTGCTTTCAGTGAAAGGAGATAT 58.579 36.000 33.92 25.51 46.11 1.63
2142 2302 5.809001 ATGTGCTTTCAGTGAAAGGAGATA 58.191 37.500 33.92 24.75 46.11 1.98
2146 2306 3.819368 TGATGTGCTTTCAGTGAAAGGA 58.181 40.909 35.24 32.52 46.21 3.36
2147 2307 4.778534 ATGATGTGCTTTCAGTGAAAGG 57.221 40.909 35.24 22.27 46.21 3.11
2149 2309 5.771153 TCAATGATGTGCTTTCAGTGAAA 57.229 34.783 17.16 17.16 43.01 2.69
2151 2311 5.771153 TTTCAATGATGTGCTTTCAGTGA 57.229 34.783 9.19 9.19 43.92 3.41
2152 2312 6.866770 AGATTTTCAATGATGTGCTTTCAGTG 59.133 34.615 5.57 5.57 39.78 3.66
2153 2313 6.989659 AGATTTTCAATGATGTGCTTTCAGT 58.010 32.000 0.00 0.00 0.00 3.41
2154 2314 8.975410 TTAGATTTTCAATGATGTGCTTTCAG 57.025 30.769 0.00 0.00 0.00 3.02
2155 2315 9.761504 TTTTAGATTTTCAATGATGTGCTTTCA 57.238 25.926 0.00 0.00 0.00 2.69
2180 2340 9.533253 GGTGCTTGCATTATTTCTGTATTTATT 57.467 29.630 0.00 0.00 0.00 1.40
2181 2341 8.694540 TGGTGCTTGCATTATTTCTGTATTTAT 58.305 29.630 0.00 0.00 0.00 1.40
2182 2342 8.060931 TGGTGCTTGCATTATTTCTGTATTTA 57.939 30.769 0.00 0.00 0.00 1.40
2183 2343 6.934056 TGGTGCTTGCATTATTTCTGTATTT 58.066 32.000 0.00 0.00 0.00 1.40
2184 2344 6.377996 TCTGGTGCTTGCATTATTTCTGTATT 59.622 34.615 0.00 0.00 0.00 1.89
2185 2345 5.887598 TCTGGTGCTTGCATTATTTCTGTAT 59.112 36.000 0.00 0.00 0.00 2.29
2186 2346 5.252547 TCTGGTGCTTGCATTATTTCTGTA 58.747 37.500 0.00 0.00 0.00 2.74
2187 2347 4.081406 TCTGGTGCTTGCATTATTTCTGT 58.919 39.130 0.00 0.00 0.00 3.41
2188 2348 4.707030 TCTGGTGCTTGCATTATTTCTG 57.293 40.909 0.00 0.00 0.00 3.02
2189 2349 4.768968 AGTTCTGGTGCTTGCATTATTTCT 59.231 37.500 0.00 0.00 0.00 2.52
2190 2350 5.064441 AGTTCTGGTGCTTGCATTATTTC 57.936 39.130 0.00 0.00 0.00 2.17
2191 2351 5.473066 AAGTTCTGGTGCTTGCATTATTT 57.527 34.783 0.00 0.00 0.00 1.40
2192 2352 6.588719 TTAAGTTCTGGTGCTTGCATTATT 57.411 33.333 0.00 0.00 0.00 1.40
2193 2353 6.389906 GTTTAAGTTCTGGTGCTTGCATTAT 58.610 36.000 0.00 0.00 0.00 1.28
2194 2354 5.278758 GGTTTAAGTTCTGGTGCTTGCATTA 60.279 40.000 0.00 0.00 0.00 1.90
2195 2355 4.501400 GGTTTAAGTTCTGGTGCTTGCATT 60.501 41.667 0.00 0.00 0.00 3.56
2196 2356 3.005791 GGTTTAAGTTCTGGTGCTTGCAT 59.994 43.478 0.00 0.00 0.00 3.96
2197 2357 2.360801 GGTTTAAGTTCTGGTGCTTGCA 59.639 45.455 0.00 0.00 0.00 4.08
2198 2358 2.288213 GGGTTTAAGTTCTGGTGCTTGC 60.288 50.000 0.00 0.00 0.00 4.01
2199 2359 3.004734 CAGGGTTTAAGTTCTGGTGCTTG 59.995 47.826 0.00 0.00 0.00 4.01
2200 2360 3.117663 TCAGGGTTTAAGTTCTGGTGCTT 60.118 43.478 0.00 0.00 0.00 3.91
2201 2361 2.441750 TCAGGGTTTAAGTTCTGGTGCT 59.558 45.455 0.00 0.00 0.00 4.40
2202 2362 2.552743 GTCAGGGTTTAAGTTCTGGTGC 59.447 50.000 0.00 0.00 0.00 5.01
2203 2363 2.806244 CGTCAGGGTTTAAGTTCTGGTG 59.194 50.000 0.00 0.00 0.00 4.17
2204 2364 2.701951 TCGTCAGGGTTTAAGTTCTGGT 59.298 45.455 0.00 0.00 0.00 4.00
2205 2365 3.326747 CTCGTCAGGGTTTAAGTTCTGG 58.673 50.000 0.00 0.00 0.00 3.86
2206 2366 2.737252 GCTCGTCAGGGTTTAAGTTCTG 59.263 50.000 0.00 0.00 0.00 3.02
2207 2367 2.633481 AGCTCGTCAGGGTTTAAGTTCT 59.367 45.455 0.00 0.00 0.00 3.01
2208 2368 2.737252 CAGCTCGTCAGGGTTTAAGTTC 59.263 50.000 0.00 0.00 0.00 3.01
2209 2369 2.367567 TCAGCTCGTCAGGGTTTAAGTT 59.632 45.455 0.00 0.00 0.00 2.66
2210 2370 1.968493 TCAGCTCGTCAGGGTTTAAGT 59.032 47.619 0.00 0.00 0.00 2.24
2211 2371 2.743636 TCAGCTCGTCAGGGTTTAAG 57.256 50.000 0.00 0.00 0.00 1.85
2212 2372 3.478857 TTTCAGCTCGTCAGGGTTTAA 57.521 42.857 0.00 0.00 0.00 1.52
2213 2373 3.478857 TTTTCAGCTCGTCAGGGTTTA 57.521 42.857 0.00 0.00 0.00 2.01
2214 2374 2.341846 TTTTCAGCTCGTCAGGGTTT 57.658 45.000 0.00 0.00 0.00 3.27
2215 2375 2.568623 ATTTTCAGCTCGTCAGGGTT 57.431 45.000 0.00 0.00 0.00 4.11
2216 2376 2.354805 GGTATTTTCAGCTCGTCAGGGT 60.355 50.000 0.00 0.00 0.00 4.34
2217 2377 2.280628 GGTATTTTCAGCTCGTCAGGG 58.719 52.381 0.00 0.00 0.00 4.45
2218 2378 2.673368 GTGGTATTTTCAGCTCGTCAGG 59.327 50.000 0.00 0.00 0.00 3.86
2219 2379 3.369147 CAGTGGTATTTTCAGCTCGTCAG 59.631 47.826 0.00 0.00 0.00 3.51
2220 2380 3.244078 ACAGTGGTATTTTCAGCTCGTCA 60.244 43.478 0.00 0.00 0.00 4.35
2221 2381 3.326747 ACAGTGGTATTTTCAGCTCGTC 58.673 45.455 0.00 0.00 0.00 4.20
2222 2382 3.006967 AGACAGTGGTATTTTCAGCTCGT 59.993 43.478 0.00 0.00 0.00 4.18
2223 2383 3.589988 AGACAGTGGTATTTTCAGCTCG 58.410 45.455 0.00 0.00 0.00 5.03
2224 2384 4.826556 AGAGACAGTGGTATTTTCAGCTC 58.173 43.478 0.00 0.00 0.00 4.09
2225 2385 4.530161 AGAGAGACAGTGGTATTTTCAGCT 59.470 41.667 0.00 0.00 0.00 4.24
2226 2386 4.826556 AGAGAGACAGTGGTATTTTCAGC 58.173 43.478 0.00 0.00 0.00 4.26
2227 2387 6.814146 GGTTAGAGAGACAGTGGTATTTTCAG 59.186 42.308 0.00 0.00 0.00 3.02
2228 2388 6.269077 TGGTTAGAGAGACAGTGGTATTTTCA 59.731 38.462 0.00 0.00 0.00 2.69
2229 2389 6.698380 TGGTTAGAGAGACAGTGGTATTTTC 58.302 40.000 0.00 0.00 0.00 2.29
2230 2390 6.681729 TGGTTAGAGAGACAGTGGTATTTT 57.318 37.500 0.00 0.00 0.00 1.82
2231 2391 6.875972 ATGGTTAGAGAGACAGTGGTATTT 57.124 37.500 0.00 0.00 0.00 1.40
2232 2392 6.440647 TGAATGGTTAGAGAGACAGTGGTATT 59.559 38.462 0.00 0.00 0.00 1.89
2233 2393 5.958380 TGAATGGTTAGAGAGACAGTGGTAT 59.042 40.000 0.00 0.00 0.00 2.73
2234 2394 5.330233 TGAATGGTTAGAGAGACAGTGGTA 58.670 41.667 0.00 0.00 0.00 3.25
2235 2395 4.160329 TGAATGGTTAGAGAGACAGTGGT 58.840 43.478 0.00 0.00 0.00 4.16
2236 2396 4.808414 TGAATGGTTAGAGAGACAGTGG 57.192 45.455 0.00 0.00 0.00 4.00
2237 2397 6.312426 GTGATTGAATGGTTAGAGAGACAGTG 59.688 42.308 0.00 0.00 0.00 3.66
2238 2398 6.014242 TGTGATTGAATGGTTAGAGAGACAGT 60.014 38.462 0.00 0.00 0.00 3.55
2239 2399 6.401394 TGTGATTGAATGGTTAGAGAGACAG 58.599 40.000 0.00 0.00 0.00 3.51
2240 2400 6.211384 TCTGTGATTGAATGGTTAGAGAGACA 59.789 38.462 0.00 0.00 0.00 3.41
2241 2401 6.634805 TCTGTGATTGAATGGTTAGAGAGAC 58.365 40.000 0.00 0.00 0.00 3.36
2242 2402 6.857437 TCTGTGATTGAATGGTTAGAGAGA 57.143 37.500 0.00 0.00 0.00 3.10
2243 2403 7.012138 CCAATCTGTGATTGAATGGTTAGAGAG 59.988 40.741 18.46 0.00 31.68 3.20
2244 2404 6.825213 CCAATCTGTGATTGAATGGTTAGAGA 59.175 38.462 18.46 0.00 31.68 3.10
2245 2405 6.600822 ACCAATCTGTGATTGAATGGTTAGAG 59.399 38.462 18.46 4.00 43.00 2.43
2246 2406 6.484288 ACCAATCTGTGATTGAATGGTTAGA 58.516 36.000 18.46 0.00 43.00 2.10
2247 2407 6.764308 ACCAATCTGTGATTGAATGGTTAG 57.236 37.500 18.46 5.13 43.00 2.34
2250 2410 5.047802 GTGAACCAATCTGTGATTGAATGGT 60.048 40.000 18.46 8.38 46.25 3.55
2251 2411 5.047872 TGTGAACCAATCTGTGATTGAATGG 60.048 40.000 18.46 7.83 39.64 3.16
2252 2412 6.016213 TGTGAACCAATCTGTGATTGAATG 57.984 37.500 18.46 7.41 0.00 2.67
2253 2413 6.653526 TTGTGAACCAATCTGTGATTGAAT 57.346 33.333 18.46 8.90 0.00 2.57
2254 2414 6.462552 TTTGTGAACCAATCTGTGATTGAA 57.537 33.333 18.46 4.46 31.81 2.69
2255 2415 6.653526 ATTTGTGAACCAATCTGTGATTGA 57.346 33.333 18.46 0.00 31.81 2.57
2256 2416 8.865978 CATTATTTGTGAACCAATCTGTGATTG 58.134 33.333 11.95 11.95 31.81 2.67
2257 2417 7.546667 GCATTATTTGTGAACCAATCTGTGATT 59.453 33.333 0.00 0.00 31.81 2.57
2258 2418 7.037438 GCATTATTTGTGAACCAATCTGTGAT 58.963 34.615 0.00 0.00 31.81 3.06
2259 2419 6.015603 TGCATTATTTGTGAACCAATCTGTGA 60.016 34.615 0.00 0.00 31.81 3.58
2260 2420 6.157904 TGCATTATTTGTGAACCAATCTGTG 58.842 36.000 0.00 0.00 31.81 3.66
2261 2421 6.343716 TGCATTATTTGTGAACCAATCTGT 57.656 33.333 0.00 0.00 31.81 3.41
2262 2422 6.183360 GCTTGCATTATTTGTGAACCAATCTG 60.183 38.462 0.00 0.00 31.81 2.90
2263 2423 5.870978 GCTTGCATTATTTGTGAACCAATCT 59.129 36.000 0.00 0.00 31.81 2.40
2264 2424 5.638657 TGCTTGCATTATTTGTGAACCAATC 59.361 36.000 0.00 0.00 31.81 2.67
2265 2425 5.409214 GTGCTTGCATTATTTGTGAACCAAT 59.591 36.000 0.00 0.00 31.81 3.16
2266 2426 4.749099 GTGCTTGCATTATTTGTGAACCAA 59.251 37.500 0.00 0.00 0.00 3.67
2267 2427 4.305769 GTGCTTGCATTATTTGTGAACCA 58.694 39.130 0.00 0.00 0.00 3.67
2268 2428 3.679502 GGTGCTTGCATTATTTGTGAACC 59.320 43.478 0.00 0.00 0.00 3.62
2269 2429 4.305769 TGGTGCTTGCATTATTTGTGAAC 58.694 39.130 0.00 0.00 0.00 3.18
2270 2430 4.280425 TCTGGTGCTTGCATTATTTGTGAA 59.720 37.500 0.00 0.00 0.00 3.18
2271 2431 3.825585 TCTGGTGCTTGCATTATTTGTGA 59.174 39.130 0.00 0.00 0.00 3.58
2272 2432 4.177165 TCTGGTGCTTGCATTATTTGTG 57.823 40.909 0.00 0.00 0.00 3.33
2273 2433 4.281688 AGTTCTGGTGCTTGCATTATTTGT 59.718 37.500 0.00 0.00 0.00 2.83
2274 2434 4.813027 AGTTCTGGTGCTTGCATTATTTG 58.187 39.130 0.00 0.00 0.00 2.32
2275 2435 5.473066 AAGTTCTGGTGCTTGCATTATTT 57.527 34.783 0.00 0.00 0.00 1.40
2276 2436 6.588719 TTAAGTTCTGGTGCTTGCATTATT 57.411 33.333 0.00 0.00 0.00 1.40
2277 2437 6.389906 GTTTAAGTTCTGGTGCTTGCATTAT 58.610 36.000 0.00 0.00 0.00 1.28
2278 2438 5.278758 GGTTTAAGTTCTGGTGCTTGCATTA 60.279 40.000 0.00 0.00 0.00 1.90
2279 2439 4.501400 GGTTTAAGTTCTGGTGCTTGCATT 60.501 41.667 0.00 0.00 0.00 3.56
2280 2440 3.005791 GGTTTAAGTTCTGGTGCTTGCAT 59.994 43.478 0.00 0.00 0.00 3.96
2281 2441 2.360801 GGTTTAAGTTCTGGTGCTTGCA 59.639 45.455 0.00 0.00 0.00 4.08
2282 2442 2.288213 GGGTTTAAGTTCTGGTGCTTGC 60.288 50.000 0.00 0.00 0.00 4.01
2283 2443 3.004734 CAGGGTTTAAGTTCTGGTGCTTG 59.995 47.826 0.00 0.00 0.00 4.01
2284 2444 3.117663 TCAGGGTTTAAGTTCTGGTGCTT 60.118 43.478 0.00 0.00 0.00 3.91
2285 2445 2.441750 TCAGGGTTTAAGTTCTGGTGCT 59.558 45.455 0.00 0.00 0.00 4.40
2286 2446 2.552743 GTCAGGGTTTAAGTTCTGGTGC 59.447 50.000 0.00 0.00 0.00 5.01
2287 2447 2.806244 CGTCAGGGTTTAAGTTCTGGTG 59.194 50.000 0.00 0.00 0.00 4.17
2288 2448 2.701951 TCGTCAGGGTTTAAGTTCTGGT 59.298 45.455 0.00 0.00 0.00 4.00
2289 2449 3.326747 CTCGTCAGGGTTTAAGTTCTGG 58.673 50.000 0.00 0.00 0.00 3.86
2290 2450 2.737252 GCTCGTCAGGGTTTAAGTTCTG 59.263 50.000 0.00 0.00 0.00 3.02
2291 2451 2.633481 AGCTCGTCAGGGTTTAAGTTCT 59.367 45.455 0.00 0.00 0.00 3.01
2292 2452 2.737252 CAGCTCGTCAGGGTTTAAGTTC 59.263 50.000 0.00 0.00 0.00 3.01
2293 2453 2.367567 TCAGCTCGTCAGGGTTTAAGTT 59.632 45.455 0.00 0.00 0.00 2.66
2294 2454 1.968493 TCAGCTCGTCAGGGTTTAAGT 59.032 47.619 0.00 0.00 0.00 2.24
2295 2455 2.743636 TCAGCTCGTCAGGGTTTAAG 57.256 50.000 0.00 0.00 0.00 1.85
2296 2456 3.478857 TTTCAGCTCGTCAGGGTTTAA 57.521 42.857 0.00 0.00 0.00 1.52
2297 2457 3.478857 TTTTCAGCTCGTCAGGGTTTA 57.521 42.857 0.00 0.00 0.00 2.01
2298 2458 2.341846 TTTTCAGCTCGTCAGGGTTT 57.658 45.000 0.00 0.00 0.00 3.27
2299 2459 2.568623 ATTTTCAGCTCGTCAGGGTT 57.431 45.000 0.00 0.00 0.00 4.11
2300 2460 3.197766 TGATATTTTCAGCTCGTCAGGGT 59.802 43.478 0.00 0.00 0.00 4.34
2301 2461 3.797039 TGATATTTTCAGCTCGTCAGGG 58.203 45.455 0.00 0.00 0.00 4.45
2302 2462 5.295292 ACAATGATATTTTCAGCTCGTCAGG 59.705 40.000 0.00 0.00 37.89 3.86
2303 2463 6.355397 ACAATGATATTTTCAGCTCGTCAG 57.645 37.500 0.00 0.00 37.89 3.51
2304 2464 5.294306 GGACAATGATATTTTCAGCTCGTCA 59.706 40.000 0.00 0.00 37.89 4.35
2305 2465 5.277538 GGGACAATGATATTTTCAGCTCGTC 60.278 44.000 0.00 0.00 37.89 4.20
2306 2466 4.576463 GGGACAATGATATTTTCAGCTCGT 59.424 41.667 0.00 0.00 37.89 4.18
2307 2467 4.818546 AGGGACAATGATATTTTCAGCTCG 59.181 41.667 0.00 0.00 37.89 5.03
2308 2468 6.060788 AGAGGGACAATGATATTTTCAGCTC 58.939 40.000 0.00 0.00 37.89 4.09
2309 2469 6.011122 AGAGGGACAATGATATTTTCAGCT 57.989 37.500 0.00 0.00 37.89 4.24
2310 2470 7.255277 GGTTAGAGGGACAATGATATTTTCAGC 60.255 40.741 0.00 0.00 37.89 4.26
2311 2471 7.775093 TGGTTAGAGGGACAATGATATTTTCAG 59.225 37.037 0.00 0.00 37.89 3.02
2312 2472 7.638444 TGGTTAGAGGGACAATGATATTTTCA 58.362 34.615 0.00 0.00 39.12 2.69
2313 2473 8.697507 ATGGTTAGAGGGACAATGATATTTTC 57.302 34.615 0.00 0.00 0.00 2.29
2314 2474 9.136323 GAATGGTTAGAGGGACAATGATATTTT 57.864 33.333 0.00 0.00 0.00 1.82
2315 2475 8.281531 TGAATGGTTAGAGGGACAATGATATTT 58.718 33.333 0.00 0.00 0.00 1.40
2316 2476 7.815383 TGAATGGTTAGAGGGACAATGATATT 58.185 34.615 0.00 0.00 0.00 1.28
2317 2477 7.392766 TGAATGGTTAGAGGGACAATGATAT 57.607 36.000 0.00 0.00 0.00 1.63
2318 2478 6.823286 TGAATGGTTAGAGGGACAATGATA 57.177 37.500 0.00 0.00 0.00 2.15
2319 2479 5.715439 TGAATGGTTAGAGGGACAATGAT 57.285 39.130 0.00 0.00 0.00 2.45
2320 2480 5.253330 GTTGAATGGTTAGAGGGACAATGA 58.747 41.667 0.00 0.00 0.00 2.57
2321 2481 4.399303 GGTTGAATGGTTAGAGGGACAATG 59.601 45.833 0.00 0.00 0.00 2.82
2322 2482 4.044065 TGGTTGAATGGTTAGAGGGACAAT 59.956 41.667 0.00 0.00 0.00 2.71
2323 2483 3.396276 TGGTTGAATGGTTAGAGGGACAA 59.604 43.478 0.00 0.00 0.00 3.18
2324 2484 2.983192 TGGTTGAATGGTTAGAGGGACA 59.017 45.455 0.00 0.00 0.00 4.02
2325 2485 3.244770 TGTGGTTGAATGGTTAGAGGGAC 60.245 47.826 0.00 0.00 0.00 4.46
2326 2486 2.983192 TGTGGTTGAATGGTTAGAGGGA 59.017 45.455 0.00 0.00 0.00 4.20
2327 2487 3.433306 TGTGGTTGAATGGTTAGAGGG 57.567 47.619 0.00 0.00 0.00 4.30
2328 2488 4.335416 ACATGTGGTTGAATGGTTAGAGG 58.665 43.478 0.00 0.00 0.00 3.69
2329 2489 5.964958 AACATGTGGTTGAATGGTTAGAG 57.035 39.130 0.00 0.00 38.60 2.43
2351 2511 5.235850 ACTATAATGTGTGTGGTGAACCA 57.764 39.130 0.00 0.00 45.30 3.67
2352 2512 5.106317 CCAACTATAATGTGTGTGGTGAACC 60.106 44.000 0.00 0.00 0.00 3.62
2353 2513 5.619086 GCCAACTATAATGTGTGTGGTGAAC 60.619 44.000 0.00 0.00 0.00 3.18
2354 2514 4.457603 GCCAACTATAATGTGTGTGGTGAA 59.542 41.667 0.00 0.00 0.00 3.18
2355 2515 4.006989 GCCAACTATAATGTGTGTGGTGA 58.993 43.478 0.00 0.00 0.00 4.02
2356 2516 3.755905 TGCCAACTATAATGTGTGTGGTG 59.244 43.478 0.00 0.00 0.00 4.17
2357 2517 4.027674 TGCCAACTATAATGTGTGTGGT 57.972 40.909 0.00 0.00 0.00 4.16
2358 2518 5.342433 CAATGCCAACTATAATGTGTGTGG 58.658 41.667 0.00 0.00 0.00 4.17
2368 2625 4.842574 TGTTCTCTGCAATGCCAACTATA 58.157 39.130 1.53 0.00 0.00 1.31
2369 2626 3.689347 TGTTCTCTGCAATGCCAACTAT 58.311 40.909 1.53 0.00 0.00 2.12
2373 2630 6.602803 TCTTATATTGTTCTCTGCAATGCCAA 59.397 34.615 1.53 0.00 37.18 4.52
2389 2646 8.331022 GGCATCGTGCTACATATTCTTATATTG 58.669 37.037 9.31 0.00 44.28 1.90
2412 2669 4.408821 GTGGGGACAGCATCGGCA 62.409 66.667 0.00 0.00 44.46 5.69
2505 2764 3.254166 CCCAAATGCCATGAGTACATAGC 59.746 47.826 0.00 0.00 40.50 2.97
2532 2791 1.789464 CTGCGACTGACAGAGAAACAC 59.211 52.381 10.08 0.00 37.32 3.32
2564 2823 5.842843 GCAATACATTTCAAGACATCGATCG 59.157 40.000 9.36 9.36 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.