Multiple sequence alignment - TraesCS5A01G111500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G111500 chr5A 100.000 3694 0 0 1 3694 214952055 214955748 0.000000e+00 6822.0
1 TraesCS5A01G111500 chr5A 82.787 122 15 6 2126 2244 631857699 631857817 1.810000e-18 104.0
2 TraesCS5A01G111500 chr5D 93.146 1634 72 16 716 2318 200784983 200786607 0.000000e+00 2361.0
3 TraesCS5A01G111500 chr5D 96.769 681 11 6 3014 3694 200787177 200787846 0.000000e+00 1125.0
4 TraesCS5A01G111500 chr5D 96.510 573 20 0 2405 2977 200786606 200787178 0.000000e+00 948.0
5 TraesCS5A01G111500 chr5D 91.159 328 25 3 287 614 200667634 200667957 3.390000e-120 442.0
6 TraesCS5A01G111500 chr5D 92.941 255 18 0 1 255 200648563 200648817 4.510000e-99 372.0
7 TraesCS5A01G111500 chr5B 94.733 1291 35 12 2405 3694 211738145 211739403 0.000000e+00 1977.0
8 TraesCS5A01G111500 chr5B 94.717 1060 34 8 791 1836 211733778 211734829 0.000000e+00 1628.0
9 TraesCS5A01G111500 chr5B 86.983 822 71 12 1 789 211732927 211733745 0.000000e+00 893.0
10 TraesCS5A01G111500 chr5B 93.852 488 24 4 1835 2318 211737661 211738146 0.000000e+00 730.0
11 TraesCS5A01G111500 chrUn 100.000 242 0 0 2971 3212 471412685 471412444 7.280000e-122 448.0
12 TraesCS5A01G111500 chr2D 92.116 241 19 0 3 243 292611212 292610972 1.270000e-89 340.0
13 TraesCS5A01G111500 chr2D 95.556 90 4 0 2317 2406 566655172 566655083 1.070000e-30 145.0
14 TraesCS5A01G111500 chr2D 95.506 89 4 0 2317 2405 98261225 98261313 3.850000e-30 143.0
15 TraesCS5A01G111500 chr2D 80.000 100 16 4 2126 2223 611219749 611219652 1.840000e-08 71.3
16 TraesCS5A01G111500 chr2A 89.535 258 26 1 1 257 366381438 366381181 3.560000e-85 326.0
17 TraesCS5A01G111500 chr2A 82.906 117 17 3 2126 2241 384331897 384331783 6.530000e-18 102.0
18 TraesCS5A01G111500 chr3D 90.164 244 24 0 12 255 98965871 98965628 5.950000e-83 318.0
19 TraesCS5A01G111500 chr3D 88.991 109 5 6 2299 2407 400336927 400336826 1.080000e-25 128.0
20 TraesCS5A01G111500 chr4B 86.667 255 32 2 1 254 247641211 247640958 7.810000e-72 281.0
21 TraesCS5A01G111500 chr4A 86.508 252 29 4 2 252 266931698 266931945 4.700000e-69 272.0
22 TraesCS5A01G111500 chr4A 94.681 94 3 1 2316 2407 462830524 462830431 1.070000e-30 145.0
23 TraesCS5A01G111500 chr4A 91.803 61 5 0 2175 2235 32114612 32114672 6.570000e-13 86.1
24 TraesCS5A01G111500 chr6D 83.682 239 33 6 20 255 200944079 200944314 1.730000e-53 220.0
25 TraesCS5A01G111500 chr7B 83.264 239 34 6 19 254 319547061 319546826 8.030000e-52 215.0
26 TraesCS5A01G111500 chr7A 94.175 103 2 4 2313 2413 590778466 590778366 1.780000e-33 154.0
27 TraesCS5A01G111500 chr1D 95.652 92 2 1 2317 2406 354500693 354500784 2.970000e-31 147.0
28 TraesCS5A01G111500 chr1D 94.565 92 0 1 2316 2407 124334336 124334422 1.790000e-28 137.0
29 TraesCS5A01G111500 chr1D 91.753 97 2 2 2310 2406 337065279 337065189 2.990000e-26 130.0
30 TraesCS5A01G111500 chr6A 90.291 103 4 2 2313 2414 594831698 594831601 2.990000e-26 130.0
31 TraesCS5A01G111500 chr6A 85.366 82 9 3 2123 2203 555423739 555423818 8.500000e-12 82.4
32 TraesCS5A01G111500 chr3A 85.000 100 14 1 666 764 674587696 674587597 2.350000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G111500 chr5A 214952055 214955748 3693 False 6822 6822 100.00000 1 3694 1 chr5A.!!$F1 3693
1 TraesCS5A01G111500 chr5D 200784983 200787846 2863 False 1478 2361 95.47500 716 3694 3 chr5D.!!$F3 2978
2 TraesCS5A01G111500 chr5B 211732927 211739403 6476 False 1307 1977 92.57125 1 3694 4 chr5B.!!$F1 3693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 648 0.107017 CCCCACGAAATCCATCAGCT 60.107 55.000 0.0 0.0 0.00 4.24 F
652 685 0.666274 GCTTTGCTTTGGGTTACCGC 60.666 55.000 0.0 0.0 40.75 5.68 F
1448 1522 0.668535 CGTATCTCATGGCAGACGGA 59.331 55.000 0.0 0.0 0.00 4.69 F
2080 4998 1.001815 CCATGTGGTTGGTTTGTCGTC 60.002 52.381 0.0 0.0 31.74 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 5455 0.975556 TGAGATTACCGCCTCCTGCA 60.976 55.000 0.00 0.00 41.33 4.41 R
2650 5571 2.038295 GCGATGGATGGGATCTTCTCTT 59.962 50.000 0.00 0.00 0.00 2.85 R
2685 5606 1.601903 TGCAGTTGAAGTTTACGGCAG 59.398 47.619 11.03 0.00 39.83 4.85 R
3219 6141 1.929836 CAAGTAGCTCGGATGCTGTTC 59.070 52.381 10.81 3.94 43.87 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.508641 CTTGTGTCGTTTGCTCTCCG 59.491 55.000 0.00 0.00 0.00 4.63
30 31 0.784778 CGTTTGCTCTCCGTCTTCAC 59.215 55.000 0.00 0.00 0.00 3.18
31 32 1.865865 GTTTGCTCTCCGTCTTCACA 58.134 50.000 0.00 0.00 0.00 3.58
41 42 3.926616 TCCGTCTTCACATTCTTCTTCC 58.073 45.455 0.00 0.00 0.00 3.46
47 48 5.584251 GTCTTCACATTCTTCTTCCTCCATC 59.416 44.000 0.00 0.00 0.00 3.51
54 55 0.253044 TTCTTCCTCCATCGCTTGGG 59.747 55.000 4.63 0.00 46.45 4.12
78 79 1.813477 GCTCCTTAGCTTCTCCATGGC 60.813 57.143 6.96 0.00 45.85 4.40
83 84 1.289160 TAGCTTCTCCATGGCTGGTT 58.711 50.000 6.96 0.00 43.61 3.67
90 91 2.353610 CCATGGCTGGTTCCTTGGC 61.354 63.158 0.00 0.00 42.28 4.52
92 93 1.607467 ATGGCTGGTTCCTTGGCAC 60.607 57.895 11.70 0.00 39.01 5.01
96 97 1.455849 CTGGTTCCTTGGCACCTGA 59.544 57.895 9.68 0.00 34.68 3.86
110 111 2.554032 GCACCTGAGTATGCAAAGTGTT 59.446 45.455 0.00 0.00 41.65 3.32
112 113 4.499696 GCACCTGAGTATGCAAAGTGTTTT 60.500 41.667 0.00 0.00 41.65 2.43
114 115 4.887071 ACCTGAGTATGCAAAGTGTTTTCA 59.113 37.500 0.00 0.00 0.00 2.69
128 129 2.878406 TGTTTTCACTTGAGGCAGTAGC 59.122 45.455 0.00 0.00 41.10 3.58
150 151 4.495349 GCCATGTCTCATGTGATTCGAAAG 60.495 45.833 0.00 0.00 0.00 2.62
177 178 0.474660 AGCAAGGAGGGAGTTCACCT 60.475 55.000 0.00 0.00 42.18 4.00
183 184 0.685660 GAGGGAGTTCACCTCGGTTT 59.314 55.000 0.00 0.00 44.50 3.27
190 191 3.087031 AGTTCACCTCGGTTTCGATAGA 58.913 45.455 0.00 0.00 45.04 1.98
191 192 7.176031 GGAGTTCACCTCGGTTTCGATAGAT 62.176 48.000 0.00 0.00 45.04 1.98
192 193 8.561942 GGAGTTCACCTCGGTTTCGATAGATT 62.562 46.154 0.00 0.00 45.04 2.40
212 213 0.537143 TTGCACGAGCCCTTGTCATT 60.537 50.000 1.39 0.00 41.13 2.57
243 244 0.392863 TGCCTTGGGTGATGATGACG 60.393 55.000 0.00 0.00 0.00 4.35
254 267 0.181114 ATGATGACGTGTCCATGGGG 59.819 55.000 13.02 1.60 0.00 4.96
260 273 2.959484 CGTGTCCATGGGGTGCTCT 61.959 63.158 13.02 0.00 34.93 4.09
277 290 5.464168 GTGCTCTGCATCATTTTGTTTACT 58.536 37.500 0.00 0.00 41.91 2.24
283 296 7.584108 TCTGCATCATTTTGTTTACTGTGTAG 58.416 34.615 0.00 0.00 0.00 2.74
291 304 6.995511 TTTGTTTACTGTGTAGTGAGCTTT 57.004 33.333 0.00 0.00 37.78 3.51
292 305 6.598753 TTGTTTACTGTGTAGTGAGCTTTC 57.401 37.500 0.00 0.00 37.78 2.62
305 318 1.228552 GCTTTCAAGGTCCTGGCCA 60.229 57.895 4.71 4.71 0.00 5.36
316 329 1.048601 TCCTGGCCATCTATCCGTTC 58.951 55.000 5.51 0.00 0.00 3.95
324 337 3.589988 CCATCTATCCGTTCTATGCCAC 58.410 50.000 0.00 0.00 0.00 5.01
325 338 3.245797 CATCTATCCGTTCTATGCCACG 58.754 50.000 0.00 0.00 36.12 4.94
334 347 3.247411 CGTTCTATGCCACGAAATGCATA 59.753 43.478 0.00 4.36 45.89 3.14
341 354 8.409371 TCTATGCCACGAAATGCATAATAAAAA 58.591 29.630 0.00 0.00 46.53 1.94
343 356 6.625362 TGCCACGAAATGCATAATAAAAAGA 58.375 32.000 0.00 0.00 31.31 2.52
373 386 4.082081 TGGACGAACCTTATGACGTATGTT 60.082 41.667 0.00 0.00 39.04 2.71
393 406 4.816925 TGTTTCATGTACGTGGACATCAAA 59.183 37.500 15.02 0.00 37.99 2.69
395 408 5.605564 TTCATGTACGTGGACATCAAAAG 57.394 39.130 15.02 0.00 37.99 2.27
467 480 9.686683 AATTCAAGGTATATTTGTAGCTCAAGT 57.313 29.630 0.00 0.00 37.35 3.16
489 502 9.959749 CAAGTATTTTACCAATATATTTGCGGT 57.040 29.630 10.03 10.03 0.00 5.68
515 528 9.288576 TCATATTCACTCAACAGAAATCTTTGT 57.711 29.630 0.00 0.00 0.00 2.83
540 553 9.431887 GTATTTGACTAACACAAAGATACTCCA 57.568 33.333 0.00 0.00 39.90 3.86
594 607 3.438087 CACCTGACCTAGTTTGCAGAATG 59.562 47.826 0.00 0.00 40.87 2.67
628 641 1.558294 AGGTTACTCCCCACGAAATCC 59.442 52.381 0.00 0.00 36.75 3.01
630 643 2.092592 GGTTACTCCCCACGAAATCCAT 60.093 50.000 0.00 0.00 0.00 3.41
631 644 3.203716 GTTACTCCCCACGAAATCCATC 58.796 50.000 0.00 0.00 0.00 3.51
632 645 1.285280 ACTCCCCACGAAATCCATCA 58.715 50.000 0.00 0.00 0.00 3.07
633 646 1.210478 ACTCCCCACGAAATCCATCAG 59.790 52.381 0.00 0.00 0.00 2.90
634 647 0.107214 TCCCCACGAAATCCATCAGC 60.107 55.000 0.00 0.00 0.00 4.26
635 648 0.107017 CCCCACGAAATCCATCAGCT 60.107 55.000 0.00 0.00 0.00 4.24
646 679 0.971386 CCATCAGCTTTGCTTTGGGT 59.029 50.000 9.29 0.00 36.40 4.51
652 685 0.666274 GCTTTGCTTTGGGTTACCGC 60.666 55.000 0.00 0.00 40.75 5.68
672 705 5.105957 ACCGCACAAAATTTAGCATATGTCA 60.106 36.000 4.29 0.00 0.00 3.58
695 728 7.596995 GTCAAAAATGTAATGATTTTGGTCCGA 59.403 33.333 9.52 0.00 41.84 4.55
706 739 7.695480 TGATTTTGGTCCGATTAAGATGAAA 57.305 32.000 0.00 0.00 0.00 2.69
739 773 8.655970 GGTTTGCATAAAATTCATCTGGTTTAC 58.344 33.333 0.00 0.00 0.00 2.01
747 781 8.970691 AAAATTCATCTGGTTTACTCAAATCG 57.029 30.769 0.00 0.00 0.00 3.34
785 819 4.652131 AACGTTGGATGGCCGGCA 62.652 61.111 30.85 15.30 36.79 5.69
805 871 1.937278 TCCGTGCGTGTCTGTTTAAA 58.063 45.000 0.00 0.00 0.00 1.52
833 904 0.752658 AGATGCCAGCACGTAGCATA 59.247 50.000 12.69 0.00 46.81 3.14
836 907 3.124864 GATGCCAGCACGTAGCATATGT 61.125 50.000 12.69 0.00 46.81 2.29
1054 1128 2.754658 CCACCTCGCCGTCTACCT 60.755 66.667 0.00 0.00 0.00 3.08
1055 1129 2.772691 CCACCTCGCCGTCTACCTC 61.773 68.421 0.00 0.00 0.00 3.85
1056 1130 2.439883 ACCTCGCCGTCTACCTCC 60.440 66.667 0.00 0.00 0.00 4.30
1057 1131 2.124236 CCTCGCCGTCTACCTCCT 60.124 66.667 0.00 0.00 0.00 3.69
1058 1132 2.188161 CCTCGCCGTCTACCTCCTC 61.188 68.421 0.00 0.00 0.00 3.71
1059 1133 2.124403 TCGCCGTCTACCTCCTCC 60.124 66.667 0.00 0.00 0.00 4.30
1107 1181 4.866508 TTCTCCGTCTCTTCTTGCTTAA 57.133 40.909 0.00 0.00 0.00 1.85
1260 1334 2.859273 CTTCCGTCCTTGCCGCAGAT 62.859 60.000 0.00 0.00 0.00 2.90
1287 1361 2.479566 AGTGACAGTTGGGTATGCTG 57.520 50.000 0.00 0.00 36.41 4.41
1295 1369 2.238898 AGTTGGGTATGCTGGTCCTTAC 59.761 50.000 0.00 0.00 0.00 2.34
1303 1377 2.457598 TGCTGGTCCTTACTAGAGGTG 58.542 52.381 0.00 0.00 36.34 4.00
1310 1384 4.963628 GGTCCTTACTAGAGGTGGATTTCT 59.036 45.833 0.00 0.00 38.04 2.52
1364 1438 4.402528 CGACCCATTGCCGACCCA 62.403 66.667 0.00 0.00 0.00 4.51
1370 1444 0.969917 CCATTGCCGACCCAAATCCA 60.970 55.000 0.00 0.00 0.00 3.41
1448 1522 0.668535 CGTATCTCATGGCAGACGGA 59.331 55.000 0.00 0.00 0.00 4.69
1616 1690 2.094182 TGAAGCTATCACGGACAAGGAC 60.094 50.000 0.00 0.00 31.50 3.85
1649 1723 3.993081 AGCTGAACGAAGAGAATGTTGAG 59.007 43.478 0.00 0.00 31.25 3.02
1667 1741 6.278363 TGTTGAGAAGGTACTGTTACTTGTC 58.722 40.000 11.68 11.68 40.86 3.18
1668 1742 6.127281 TGTTGAGAAGGTACTGTTACTTGTCA 60.127 38.462 15.18 15.18 40.86 3.58
1680 1755 1.999648 ACTTGTCAATGGTGCCATGT 58.000 45.000 4.26 0.00 36.68 3.21
1689 1764 7.286313 TGTCAATGGTGCCATGTAGAATAATA 58.714 34.615 4.26 0.00 36.68 0.98
1736 1811 3.311106 ACAATTCGATGCAGTGCAAAAG 58.689 40.909 23.90 15.92 43.62 2.27
1811 1892 2.604912 TCACTAGAGGGTCTTGCAGA 57.395 50.000 0.00 0.00 0.00 4.26
2048 4966 3.733727 GTCCGTTAAATTTTGTGGCACAG 59.266 43.478 20.97 5.60 41.80 3.66
2080 4998 1.001815 CCATGTGGTTGGTTTGTCGTC 60.002 52.381 0.00 0.00 31.74 4.20
2088 5006 3.304458 GGTTGGTTTGTCGTCCATTCTTC 60.304 47.826 0.00 0.00 33.50 2.87
2144 5063 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
2148 5067 3.075148 CTCCCTCCGTTTCTTTTTCTCC 58.925 50.000 0.00 0.00 0.00 3.71
2167 5086 4.159135 TCTCCGCGTATTAGGTTTCTCTTT 59.841 41.667 4.92 0.00 0.00 2.52
2289 5210 3.520569 ACATTGTTTCCTTGTTGCACAC 58.479 40.909 0.00 0.00 0.00 3.82
2311 5232 4.404073 ACTGTCCTACACCTTGAGATGATC 59.596 45.833 0.00 0.00 0.00 2.92
2317 5238 7.885922 GTCCTACACCTTGAGATGATCTATCTA 59.114 40.741 0.00 0.00 46.12 1.98
2318 5239 7.885922 TCCTACACCTTGAGATGATCTATCTAC 59.114 40.741 0.00 4.01 46.12 2.59
2319 5240 7.888021 CCTACACCTTGAGATGATCTATCTACT 59.112 40.741 0.00 0.00 46.12 2.57
2320 5241 7.759489 ACACCTTGAGATGATCTATCTACTC 57.241 40.000 0.00 0.00 46.12 2.59
2321 5242 6.719370 ACACCTTGAGATGATCTATCTACTCC 59.281 42.308 0.00 0.00 46.12 3.85
2322 5243 6.152661 CACCTTGAGATGATCTATCTACTCCC 59.847 46.154 0.00 0.00 46.12 4.30
2323 5244 6.046643 ACCTTGAGATGATCTATCTACTCCCT 59.953 42.308 0.00 0.00 46.12 4.20
2324 5245 6.603201 CCTTGAGATGATCTATCTACTCCCTC 59.397 46.154 0.00 0.00 46.12 4.30
2325 5246 6.968400 TGAGATGATCTATCTACTCCCTCT 57.032 41.667 0.00 0.00 46.12 3.69
2326 5247 6.720309 TGAGATGATCTATCTACTCCCTCTG 58.280 44.000 0.00 0.00 46.12 3.35
2327 5248 6.274436 TGAGATGATCTATCTACTCCCTCTGT 59.726 42.308 0.00 0.00 46.12 3.41
2328 5249 6.721318 AGATGATCTATCTACTCCCTCTGTC 58.279 44.000 0.00 0.00 44.32 3.51
2329 5250 5.249780 TGATCTATCTACTCCCTCTGTCC 57.750 47.826 0.00 0.00 0.00 4.02
2330 5251 4.043561 TGATCTATCTACTCCCTCTGTCCC 59.956 50.000 0.00 0.00 0.00 4.46
2331 5252 3.404292 TCTATCTACTCCCTCTGTCCCA 58.596 50.000 0.00 0.00 0.00 4.37
2332 5253 3.990933 TCTATCTACTCCCTCTGTCCCAT 59.009 47.826 0.00 0.00 0.00 4.00
2333 5254 5.170959 TCTATCTACTCCCTCTGTCCCATA 58.829 45.833 0.00 0.00 0.00 2.74
2334 5255 4.834406 ATCTACTCCCTCTGTCCCATAA 57.166 45.455 0.00 0.00 0.00 1.90
2335 5256 4.834406 TCTACTCCCTCTGTCCCATAAT 57.166 45.455 0.00 0.00 0.00 1.28
2336 5257 5.942977 TCTACTCCCTCTGTCCCATAATA 57.057 43.478 0.00 0.00 0.00 0.98
2337 5258 6.485388 TCTACTCCCTCTGTCCCATAATAT 57.515 41.667 0.00 0.00 0.00 1.28
2338 5259 7.599353 TCTACTCCCTCTGTCCCATAATATA 57.401 40.000 0.00 0.00 0.00 0.86
2339 5260 8.008104 TCTACTCCCTCTGTCCCATAATATAA 57.992 38.462 0.00 0.00 0.00 0.98
2340 5261 8.116669 TCTACTCCCTCTGTCCCATAATATAAG 58.883 40.741 0.00 0.00 0.00 1.73
2341 5262 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2342 5263 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
2343 5264 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
2344 5265 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
2345 5266 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
2346 5267 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
2347 5268 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
2348 5269 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2349 5270 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2350 5271 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
2351 5272 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
2352 5273 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2353 5274 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2354 5275 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2355 5276 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2358 5279 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
2359 5280 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
2360 5281 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
2361 5282 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
2362 5283 4.743644 AGAGCGTTTTTGACACTACACTAC 59.256 41.667 0.00 0.00 0.00 2.73
2363 5284 4.435425 AGCGTTTTTGACACTACACTACA 58.565 39.130 0.00 0.00 0.00 2.74
2364 5285 4.269363 AGCGTTTTTGACACTACACTACAC 59.731 41.667 0.00 0.00 0.00 2.90
2365 5286 4.269363 GCGTTTTTGACACTACACTACACT 59.731 41.667 0.00 0.00 0.00 3.55
2366 5287 5.459762 GCGTTTTTGACACTACACTACACTA 59.540 40.000 0.00 0.00 0.00 2.74
2367 5288 6.345565 GCGTTTTTGACACTACACTACACTAG 60.346 42.308 0.00 0.00 0.00 2.57
2368 5289 6.694411 CGTTTTTGACACTACACTACACTAGT 59.306 38.462 0.00 0.00 40.28 2.57
2381 5302 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
2382 5303 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
2383 5304 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
2384 5305 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
2385 5306 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
2386 5307 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
2387 5308 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
2388 5309 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
2389 5310 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
2392 5313 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2393 5314 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2394 5315 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2395 5316 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2415 5336 5.880887 GGGACAGAGGGAGTAACTTTTATTG 59.119 44.000 0.00 0.00 0.00 1.90
2469 5390 4.884164 AGCTGGAGCAAATAAAGGTACATC 59.116 41.667 0.65 0.00 45.16 3.06
2685 5606 3.432051 ATCGCAGCTGTCCGGCTAC 62.432 63.158 16.64 0.00 41.00 3.58
2752 5673 3.748083 TCCAGGAGAATGCTATGAATGC 58.252 45.455 0.00 0.00 29.87 3.56
2874 5796 4.885325 TGTAACAAGGTTCTTTTGGTCTCC 59.115 41.667 0.00 0.00 0.00 3.71
2947 5869 5.177327 CGTTGCTTTGCCTGAAAAATTACAT 59.823 36.000 0.00 0.00 0.00 2.29
3219 6141 1.650153 CGTCATGCAAAATCGCAAAGG 59.350 47.619 0.00 0.00 46.87 3.11
3419 6341 2.479750 GGGAGACGACGAGGTAGGC 61.480 68.421 0.00 0.00 0.00 3.93
3647 6569 1.751927 GAGACGACGGGGAAGGCTA 60.752 63.158 0.00 0.00 0.00 3.93
3655 6577 0.541863 CGGGGAAGGCTATGTCTTGT 59.458 55.000 0.00 0.00 0.00 3.16
3656 6578 1.473434 CGGGGAAGGCTATGTCTTGTC 60.473 57.143 0.00 0.00 0.00 3.18
3657 6579 1.840635 GGGGAAGGCTATGTCTTGTCT 59.159 52.381 0.00 0.00 0.00 3.41
3658 6580 2.239907 GGGGAAGGCTATGTCTTGTCTT 59.760 50.000 0.00 0.00 0.00 3.01
3659 6581 3.454812 GGGGAAGGCTATGTCTTGTCTTA 59.545 47.826 0.00 0.00 0.00 2.10
3687 6609 1.289800 GACAAGAGAACGGCGGAACC 61.290 60.000 13.24 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.899502 TGGAGGAAGAAGAATGTGAAGAC 58.100 43.478 0.00 0.00 0.00 3.01
30 31 3.191078 AGCGATGGAGGAAGAAGAATG 57.809 47.619 0.00 0.00 0.00 2.67
31 32 3.539604 CAAGCGATGGAGGAAGAAGAAT 58.460 45.455 0.00 0.00 0.00 2.40
47 48 1.372087 CTAAGGAGCAAGCCCAAGCG 61.372 60.000 0.00 0.00 46.67 4.68
78 79 0.607489 CTCAGGTGCCAAGGAACCAG 60.607 60.000 18.56 10.63 46.39 4.00
83 84 0.253044 GCATACTCAGGTGCCAAGGA 59.747 55.000 0.00 0.00 35.35 3.36
90 91 4.836125 AAACACTTTGCATACTCAGGTG 57.164 40.909 0.00 0.00 0.00 4.00
92 93 5.009010 AGTGAAAACACTTTGCATACTCAGG 59.991 40.000 0.00 0.00 29.93 3.86
96 97 6.449635 TCAAGTGAAAACACTTTGCATACT 57.550 33.333 12.02 0.00 42.87 2.12
122 123 3.531934 TCACATGAGACATGGCTACTG 57.468 47.619 0.00 4.45 0.00 2.74
128 129 4.034858 CCTTTCGAATCACATGAGACATGG 59.965 45.833 14.70 5.60 0.00 3.66
150 151 1.201429 TCCCTCCTTGCTCAACTCCC 61.201 60.000 0.00 0.00 0.00 4.30
177 178 3.061563 CGTGCAAAATCTATCGAAACCGA 59.938 43.478 0.00 0.00 40.65 4.69
183 184 2.201732 GGCTCGTGCAAAATCTATCGA 58.798 47.619 12.07 0.00 41.91 3.59
190 191 0.598065 GACAAGGGCTCGTGCAAAAT 59.402 50.000 12.07 0.00 41.91 1.82
191 192 0.749818 TGACAAGGGCTCGTGCAAAA 60.750 50.000 12.07 0.00 41.91 2.44
192 193 0.537143 ATGACAAGGGCTCGTGCAAA 60.537 50.000 12.07 0.00 41.91 3.68
212 213 1.152777 CAAGGCACCAAGTGGACCA 60.153 57.895 3.83 0.00 37.40 4.02
243 244 1.377725 CAGAGCACCCCATGGACAC 60.378 63.158 15.22 0.00 34.81 3.67
254 267 5.344128 CAGTAAACAAAATGATGCAGAGCAC 59.656 40.000 0.00 0.00 43.04 4.40
260 273 7.012799 TCACTACACAGTAAACAAAATGATGCA 59.987 33.333 0.00 0.00 32.21 3.96
277 290 3.494398 GGACCTTGAAAGCTCACTACACA 60.494 47.826 0.00 0.00 0.00 3.72
283 296 1.528129 CCAGGACCTTGAAAGCTCAC 58.472 55.000 0.00 0.00 0.00 3.51
291 304 2.050144 GATAGATGGCCAGGACCTTGA 58.950 52.381 13.05 0.00 0.00 3.02
292 305 1.072965 GGATAGATGGCCAGGACCTTG 59.927 57.143 13.05 0.00 0.00 3.61
298 311 1.051812 AGAACGGATAGATGGCCAGG 58.948 55.000 13.05 0.00 0.00 4.45
305 318 3.154710 TCGTGGCATAGAACGGATAGAT 58.845 45.455 0.00 0.00 40.18 1.98
347 360 3.934068 ACGTCATAAGGTTCGTCCATTT 58.066 40.909 0.00 0.00 39.02 2.32
349 362 4.098960 ACATACGTCATAAGGTTCGTCCAT 59.901 41.667 0.00 0.00 39.02 3.41
354 367 6.035650 ACATGAAACATACGTCATAAGGTTCG 59.964 38.462 0.00 0.00 33.15 3.95
357 370 6.474427 CGTACATGAAACATACGTCATAAGGT 59.526 38.462 0.00 0.00 37.50 3.50
373 386 5.178623 GTCTTTTGATGTCCACGTACATGAA 59.821 40.000 8.65 4.12 40.17 2.57
489 502 9.288576 ACAAAGATTTCTGTTGAGTGAATATGA 57.711 29.630 8.49 0.00 0.00 2.15
594 607 4.381411 GAGTAACCTCTGCAATATGTCCC 58.619 47.826 0.00 0.00 34.69 4.46
607 620 2.419713 GGATTTCGTGGGGAGTAACCTC 60.420 54.545 0.00 0.00 40.19 3.85
628 641 2.825861 AACCCAAAGCAAAGCTGATG 57.174 45.000 0.00 0.00 39.62 3.07
630 643 1.960689 GGTAACCCAAAGCAAAGCTGA 59.039 47.619 0.00 0.00 39.62 4.26
631 644 1.335872 CGGTAACCCAAAGCAAAGCTG 60.336 52.381 0.00 0.00 39.62 4.24
632 645 0.958822 CGGTAACCCAAAGCAAAGCT 59.041 50.000 0.00 0.00 42.56 3.74
633 646 0.666274 GCGGTAACCCAAAGCAAAGC 60.666 55.000 0.00 0.00 0.00 3.51
634 647 0.671251 TGCGGTAACCCAAAGCAAAG 59.329 50.000 0.00 0.00 34.66 2.77
635 648 0.386113 GTGCGGTAACCCAAAGCAAA 59.614 50.000 0.00 0.00 39.67 3.68
646 679 6.857956 ACATATGCTAAATTTTGTGCGGTAA 58.142 32.000 1.58 0.00 0.00 2.85
706 739 8.199449 AGATGAATTTTATGCAAACCGATGATT 58.801 29.630 0.00 0.00 0.00 2.57
765 799 1.376166 CCGGCCATCCAACGTTGTA 60.376 57.895 25.63 12.13 0.00 2.41
769 803 4.424711 ATGCCGGCCATCCAACGT 62.425 61.111 26.77 0.00 0.00 3.99
785 819 2.157834 TTAAACAGACACGCACGGAT 57.842 45.000 0.00 0.00 0.00 4.18
790 824 2.335316 ACCCTTTAAACAGACACGCA 57.665 45.000 0.00 0.00 0.00 5.24
791 825 3.368495 CAAACCCTTTAAACAGACACGC 58.632 45.455 0.00 0.00 0.00 5.34
805 871 1.980772 GCTGGCATCTGCAAACCCT 60.981 57.895 4.33 0.00 44.36 4.34
833 904 1.380246 AACCGATGGCCATGCACAT 60.380 52.632 26.56 0.00 0.00 3.21
836 907 2.755064 CCAACCGATGGCCATGCA 60.755 61.111 26.56 0.00 43.80 3.96
872 943 7.464045 GCTCGTTTCTTTTGCTAAATTTTGTGT 60.464 33.333 0.00 0.00 0.00 3.72
1054 1128 0.793617 ACCTTGAAGGAGGAGGAGGA 59.206 55.000 19.83 0.00 37.67 3.71
1055 1129 2.552093 TACCTTGAAGGAGGAGGAGG 57.448 55.000 19.83 0.00 37.67 4.30
1107 1181 2.066262 CGTTAGACAACATGAAGCGGT 58.934 47.619 0.00 0.00 34.05 5.68
1141 1215 0.320508 GACGAGACCCCAACCTTGAC 60.321 60.000 0.00 0.00 0.00 3.18
1278 1352 3.573695 TCTAGTAAGGACCAGCATACCC 58.426 50.000 0.00 0.00 0.00 3.69
1280 1354 4.038162 CACCTCTAGTAAGGACCAGCATAC 59.962 50.000 4.52 0.00 38.87 2.39
1287 1361 4.963628 AGAAATCCACCTCTAGTAAGGACC 59.036 45.833 4.52 0.00 38.87 4.46
1295 1369 8.482128 AGATGAAACTTAGAAATCCACCTCTAG 58.518 37.037 0.00 0.00 0.00 2.43
1303 1377 8.649973 ACGTGATAGATGAAACTTAGAAATCC 57.350 34.615 0.00 0.00 0.00 3.01
1310 1384 7.801315 GCAACAAAACGTGATAGATGAAACTTA 59.199 33.333 0.00 0.00 0.00 2.24
1364 1438 1.369625 GCGAATCGACCACTGGATTT 58.630 50.000 6.91 0.00 33.25 2.17
1370 1444 2.277084 GTTAATGGCGAATCGACCACT 58.723 47.619 17.96 11.81 36.35 4.00
1616 1690 1.796796 GTTCAGCTTAAGCCCAGCG 59.203 57.895 23.71 7.83 42.55 5.18
1649 1723 5.995897 ACCATTGACAAGTAACAGTACCTTC 59.004 40.000 0.00 0.00 0.00 3.46
1667 1741 9.814899 TTTTTATTATTCTACATGGCACCATTG 57.185 29.630 0.00 0.00 33.90 2.82
1689 1764 6.978080 ACGTTGTCTGCACAATTAGAATTTTT 59.022 30.769 0.00 0.00 44.47 1.94
1736 1811 5.185056 AGGTTAATGCTTGACAAATACCCAC 59.815 40.000 0.00 0.00 0.00 4.61
1853 4768 7.334421 TGGAACACTAGCATTCTATTTGAAGAC 59.666 37.037 6.54 0.00 38.18 3.01
1904 4822 8.349245 TGGTATGTGAAATTAAAGACAACACAG 58.651 33.333 0.00 0.00 39.47 3.66
2020 4938 5.463724 GCCACAAAATTTAACGGACAAATCA 59.536 36.000 0.00 0.00 0.00 2.57
2088 5006 8.737168 TTCTGTATTGGAATGTCATTCTAAGG 57.263 34.615 23.51 15.39 41.91 2.69
2144 5063 3.285484 AGAGAAACCTAATACGCGGAGA 58.715 45.455 12.47 0.00 0.00 3.71
2148 5067 6.529125 TGACTTAAAGAGAAACCTAATACGCG 59.471 38.462 3.53 3.53 0.00 6.01
2289 5210 4.648762 AGATCATCTCAAGGTGTAGGACAG 59.351 45.833 0.00 0.00 0.00 3.51
2311 5232 3.885976 TGGGACAGAGGGAGTAGATAG 57.114 52.381 0.00 0.00 0.00 2.08
2326 5247 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2327 5248 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2328 5249 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2329 5250 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2332 5253 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
2333 5254 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
2334 5255 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
2335 5256 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
2336 5257 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
2337 5258 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
2338 5259 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
2339 5260 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
2340 5261 4.505191 TGTAGTGTAGTGTCAAAAACGCTC 59.495 41.667 0.00 0.00 45.69 5.03
2342 5263 4.269363 AGTGTAGTGTAGTGTCAAAAACGC 59.731 41.667 0.00 0.00 38.74 4.84
2343 5264 5.961395 AGTGTAGTGTAGTGTCAAAAACG 57.039 39.130 0.00 0.00 0.00 3.60
2344 5265 7.998753 ACTAGTGTAGTGTAGTGTCAAAAAC 57.001 36.000 0.00 0.00 37.69 2.43
2358 5279 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
2359 5280 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
2360 5281 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
2362 5283 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
2363 5284 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
2366 5287 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2367 5288 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2368 5289 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2369 5290 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2370 5291 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
2371 5292 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
2372 5293 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2373 5294 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2374 5295 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
2375 5296 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
2376 5297 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
2377 5298 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
2378 5299 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
2379 5300 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
2380 5301 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2381 5302 8.532819 GTTACTCCCTCTGTCCCATAATATAAG 58.467 40.741 0.00 0.00 0.00 1.73
2382 5303 8.239478 AGTTACTCCCTCTGTCCCATAATATAA 58.761 37.037 0.00 0.00 0.00 0.98
2383 5304 7.776745 AGTTACTCCCTCTGTCCCATAATATA 58.223 38.462 0.00 0.00 0.00 0.86
2384 5305 6.635021 AGTTACTCCCTCTGTCCCATAATAT 58.365 40.000 0.00 0.00 0.00 1.28
2385 5306 6.039415 AGTTACTCCCTCTGTCCCATAATA 57.961 41.667 0.00 0.00 0.00 0.98
2386 5307 4.897051 AGTTACTCCCTCTGTCCCATAAT 58.103 43.478 0.00 0.00 0.00 1.28
2387 5308 4.348020 AGTTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
2388 5309 4.348020 AAGTTACTCCCTCTGTCCCATA 57.652 45.455 0.00 0.00 0.00 2.74
2389 5310 2.950990 AGTTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
2390 5311 2.715763 AAGTTACTCCCTCTGTCCCA 57.284 50.000 0.00 0.00 0.00 4.37
2391 5312 5.695424 ATAAAAGTTACTCCCTCTGTCCC 57.305 43.478 0.00 0.00 0.00 4.46
2392 5313 5.880887 CCAATAAAAGTTACTCCCTCTGTCC 59.119 44.000 0.00 0.00 0.00 4.02
2393 5314 5.354513 GCCAATAAAAGTTACTCCCTCTGTC 59.645 44.000 0.00 0.00 0.00 3.51
2394 5315 5.254115 GCCAATAAAAGTTACTCCCTCTGT 58.746 41.667 0.00 0.00 0.00 3.41
2395 5316 4.640647 GGCCAATAAAAGTTACTCCCTCTG 59.359 45.833 0.00 0.00 0.00 3.35
2396 5317 4.325109 GGGCCAATAAAAGTTACTCCCTCT 60.325 45.833 4.39 0.00 0.00 3.69
2397 5318 3.952323 GGGCCAATAAAAGTTACTCCCTC 59.048 47.826 4.39 0.00 0.00 4.30
2398 5319 3.596500 AGGGCCAATAAAAGTTACTCCCT 59.403 43.478 6.18 0.00 36.79 4.20
2399 5320 3.977312 AGGGCCAATAAAAGTTACTCCC 58.023 45.455 6.18 0.00 0.00 4.30
2400 5321 5.105473 GGAAAGGGCCAATAAAAGTTACTCC 60.105 44.000 6.18 0.00 0.00 3.85
2401 5322 5.479027 TGGAAAGGGCCAATAAAAGTTACTC 59.521 40.000 6.18 0.00 34.31 2.59
2402 5323 5.399113 TGGAAAGGGCCAATAAAAGTTACT 58.601 37.500 6.18 0.00 34.31 2.24
2403 5324 5.731957 TGGAAAGGGCCAATAAAAGTTAC 57.268 39.130 6.18 0.00 34.31 2.50
2469 5390 5.991606 GGGTGAAAGGAAGGAATTTTCAAAG 59.008 40.000 0.97 0.00 34.02 2.77
2534 5455 0.975556 TGAGATTACCGCCTCCTGCA 60.976 55.000 0.00 0.00 41.33 4.41
2634 5555 4.815533 TCTCTTTGAGCTTCTGTGCTAT 57.184 40.909 0.00 0.00 44.17 2.97
2650 5571 2.038295 GCGATGGATGGGATCTTCTCTT 59.962 50.000 0.00 0.00 0.00 2.85
2685 5606 1.601903 TGCAGTTGAAGTTTACGGCAG 59.398 47.619 11.03 0.00 39.83 4.85
2738 5659 4.212004 TCAGTTAGCGCATTCATAGCATTC 59.788 41.667 11.47 0.00 0.00 2.67
2752 5673 3.119291 GTGGTGATCTGATCAGTTAGCG 58.881 50.000 21.92 0.00 40.53 4.26
2947 5869 3.387374 TGCCTTGGCTTCTTTCAAAATCA 59.613 39.130 13.18 0.00 0.00 2.57
2977 5899 1.980765 AGATGAGACCACAAGGCTTCA 59.019 47.619 0.00 0.00 39.06 3.02
3126 6048 3.703556 TGTTCCTTTGTTCATGGCTTGAA 59.296 39.130 11.38 11.38 42.09 2.69
3127 6049 3.068024 GTGTTCCTTTGTTCATGGCTTGA 59.932 43.478 0.00 0.00 0.00 3.02
3219 6141 1.929836 CAAGTAGCTCGGATGCTGTTC 59.070 52.381 10.81 3.94 43.87 3.18
3307 6229 2.526432 GAGATCTTGGCTCGGGGTATA 58.474 52.381 0.00 0.00 0.00 1.47
3419 6341 4.814294 CCTTCGCCGGGTTCCTCG 62.814 72.222 2.18 0.00 0.00 4.63
3647 6569 7.511959 TGTCGCTATATCTAAGACAAGACAT 57.488 36.000 0.00 0.00 38.66 3.06
3655 6577 6.073167 CCGTTCTCTTGTCGCTATATCTAAGA 60.073 42.308 0.00 0.00 0.00 2.10
3656 6578 6.081049 CCGTTCTCTTGTCGCTATATCTAAG 58.919 44.000 0.00 0.00 0.00 2.18
3657 6579 5.562307 GCCGTTCTCTTGTCGCTATATCTAA 60.562 44.000 0.00 0.00 0.00 2.10
3658 6580 4.083431 GCCGTTCTCTTGTCGCTATATCTA 60.083 45.833 0.00 0.00 0.00 1.98
3659 6581 3.304794 GCCGTTCTCTTGTCGCTATATCT 60.305 47.826 0.00 0.00 0.00 1.98
3666 6588 3.479269 CCGCCGTTCTCTTGTCGC 61.479 66.667 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.