Multiple sequence alignment - TraesCS5A01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G111400 chr5A 100.000 8632 0 0 1 8632 214913105 214921736 0.000000e+00 15941.0
1 TraesCS5A01G111400 chr5A 88.816 304 33 1 5305 5608 441923225 441922923 1.060000e-98 372.0
2 TraesCS5A01G111400 chr5D 95.357 4135 119 30 636 4725 200638708 200642814 0.000000e+00 6505.0
3 TraesCS5A01G111400 chr5D 94.735 3514 112 33 4722 8170 200642854 200646359 0.000000e+00 5397.0
4 TraesCS5A01G111400 chr5D 84.314 459 63 8 1 455 200638259 200638712 2.860000e-119 440.0
5 TraesCS5A01G111400 chr5D 88.852 305 31 3 5305 5608 360542173 360541871 1.060000e-98 372.0
6 TraesCS5A01G111400 chr5D 92.135 89 4 3 8535 8622 200646355 200646441 1.180000e-23 122.0
7 TraesCS5A01G111400 chr5D 96.296 54 2 0 6002 6055 29498158 29498105 1.190000e-13 89.8
8 TraesCS5A01G111400 chr5B 94.563 4138 131 33 636 4725 211582310 211586401 0.000000e+00 6309.0
9 TraesCS5A01G111400 chr5B 92.837 2541 105 34 6139 8621 211588008 211590529 0.000000e+00 3613.0
10 TraesCS5A01G111400 chr5B 93.282 1310 50 19 4724 6008 211586443 211587739 0.000000e+00 1897.0
11 TraesCS5A01G111400 chr5B 89.439 1231 81 24 7430 8631 211618699 211619909 0.000000e+00 1507.0
12 TraesCS5A01G111400 chr5B 84.683 457 63 7 1 455 211581863 211582314 4.750000e-122 449.0
13 TraesCS5A01G111400 chr5B 88.889 306 31 3 5305 5610 192866460 192866762 2.940000e-99 374.0
14 TraesCS5A01G111400 chr5B 88.525 305 34 1 5305 5609 400094675 400094372 1.370000e-97 368.0
15 TraesCS5A01G111400 chr5B 91.549 142 3 5 6007 6139 211587782 211587923 4.110000e-43 187.0
16 TraesCS5A01G111400 chr2D 89.542 306 29 3 5305 5610 388833977 388833675 1.360000e-102 385.0
17 TraesCS5A01G111400 chr2D 92.473 186 12 2 451 635 128025765 128025949 1.850000e-66 265.0
18 TraesCS5A01G111400 chr3A 89.251 307 25 8 5305 5609 210248675 210248975 2.270000e-100 377.0
19 TraesCS5A01G111400 chr3A 94.643 56 3 0 5993 6048 327830858 327830913 4.290000e-13 87.9
20 TraesCS5A01G111400 chr3B 89.251 307 24 9 5305 5609 250805170 250805469 8.180000e-100 375.0
21 TraesCS5A01G111400 chr4A 80.603 464 64 17 7186 7632 518828921 518829375 1.390000e-87 335.0
22 TraesCS5A01G111400 chr4A 88.415 164 17 2 3927 4089 518826138 518826300 6.840000e-46 196.0
23 TraesCS5A01G111400 chr4B 85.906 298 42 0 7186 7483 100849832 100850129 1.400000e-82 318.0
24 TraesCS5A01G111400 chr4B 91.209 182 16 0 454 635 601794818 601794999 1.860000e-61 248.0
25 TraesCS5A01G111400 chr4B 89.157 166 17 1 3925 4089 100847168 100847333 1.140000e-48 206.0
26 TraesCS5A01G111400 chr2A 95.652 184 6 1 454 635 117393211 117393028 2.360000e-75 294.0
27 TraesCS5A01G111400 chr3D 93.296 179 12 0 457 635 436020076 436020254 1.850000e-66 265.0
28 TraesCS5A01G111400 chr3D 82.051 195 29 6 1 193 65413647 65413837 2.490000e-35 161.0
29 TraesCS5A01G111400 chr1B 91.257 183 16 0 454 636 551496077 551496259 5.170000e-62 250.0
30 TraesCS5A01G111400 chr1B 90.110 182 17 1 454 635 665505171 665504991 1.450000e-57 235.0
31 TraesCS5A01G111400 chr1B 94.444 54 3 0 5994 6047 677585857 677585804 5.550000e-12 84.2
32 TraesCS5A01G111400 chr1B 86.567 67 8 1 6002 6068 198131857 198131792 1.200000e-08 73.1
33 TraesCS5A01G111400 chr1A 90.476 189 15 3 449 635 531508926 531509113 6.690000e-61 246.0
34 TraesCS5A01G111400 chr7B 90.710 183 15 2 454 635 290835427 290835246 8.660000e-60 243.0
35 TraesCS5A01G111400 chr1D 89.840 187 16 3 451 635 453967930 453968115 4.030000e-58 237.0
36 TraesCS5A01G111400 chr4D 89.759 166 16 1 3925 4089 68424475 68424640 2.440000e-50 211.0
37 TraesCS5A01G111400 chrUn 77.604 192 33 8 7 195 12652668 12652484 3.300000e-19 108.0
38 TraesCS5A01G111400 chrUn 94.444 54 3 0 6002 6055 229993788 229993841 5.550000e-12 84.2
39 TraesCS5A01G111400 chrUn 94.444 54 3 0 6002 6055 245747854 245747907 5.550000e-12 84.2
40 TraesCS5A01G111400 chr6B 94.643 56 3 0 6000 6055 287601720 287601665 4.290000e-13 87.9
41 TraesCS5A01G111400 chr6B 89.362 47 4 1 7588 7634 29737852 29737897 3.370000e-04 58.4
42 TraesCS5A01G111400 chr6A 92.453 53 4 0 6002 6054 611563224 611563172 9.290000e-10 76.8
43 TraesCS5A01G111400 chr7A 90.476 42 2 2 7600 7641 30410632 30410671 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G111400 chr5A 214913105 214921736 8631 False 15941.0 15941 100.00000 1 8632 1 chr5A.!!$F1 8631
1 TraesCS5A01G111400 chr5D 200638259 200646441 8182 False 3116.0 6505 91.63525 1 8622 4 chr5D.!!$F1 8621
2 TraesCS5A01G111400 chr5B 211581863 211590529 8666 False 2491.0 6309 91.38280 1 8621 5 chr5B.!!$F3 8620
3 TraesCS5A01G111400 chr5B 211618699 211619909 1210 False 1507.0 1507 89.43900 7430 8631 1 chr5B.!!$F2 1201
4 TraesCS5A01G111400 chr4A 518826138 518829375 3237 False 265.5 335 84.50900 3927 7632 2 chr4A.!!$F1 3705
5 TraesCS5A01G111400 chr4B 100847168 100850129 2961 False 262.0 318 87.53150 3925 7483 2 chr4B.!!$F2 3558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 173 0.030909 TCGCCAATTAGGACCCCCTA 60.031 55.000 0.00 0.00 43.97 3.53 F
196 200 0.179015 TCCGCCTGTTTTAGCACCAA 60.179 50.000 0.00 0.00 0.00 3.67 F
1223 1244 0.036952 CTGTGGCGTCAGATCTGGTT 60.037 55.000 22.42 0.00 37.61 3.67 F
2058 2081 0.397564 TCATGTGCTCTGTCCTTGCA 59.602 50.000 0.00 0.00 0.00 4.08 F
2754 2777 0.674581 TGAGCATTTCGTCTGGCTGG 60.675 55.000 0.00 0.00 36.59 4.85 F
4191 4233 0.819259 GCCACTCAACTGTTGCCTGA 60.819 55.000 15.52 0.00 0.00 3.86 F
5225 6190 0.033208 GGAGGATGTGGGATTGGCAA 60.033 55.000 0.68 0.68 0.00 4.52 F
5358 6323 0.535102 GCATATACAACGCAGGCCCT 60.535 55.000 0.00 0.00 0.00 5.19 F
5361 6326 0.906066 TATACAACGCAGGCCCTCAA 59.094 50.000 0.00 0.00 0.00 3.02 F
5946 6996 1.003718 ACAGTGGCGCCTAAACCTC 60.004 57.895 29.70 8.96 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 1226 0.320683 CAACCAGATCTGACGCCACA 60.321 55.000 24.62 0.00 0.00 4.17 R
2022 2045 1.154338 GAGTTGCAGCATCACGCAC 60.154 57.895 2.55 0.00 46.13 5.34 R
2252 2275 2.456577 GCATGGGGTAACATTTCCACT 58.543 47.619 0.00 0.00 39.74 4.00 R
3892 3934 2.678336 GTTAGTTCAAAGGGGAGATGCG 59.322 50.000 0.00 0.00 0.00 4.73 R
4580 4983 1.137825 CTCCTCGCGAGTTCCTCAC 59.862 63.158 32.41 0.00 33.51 3.51 R
5882 6851 0.332972 AACAAGATGAAGGGAGGGGC 59.667 55.000 0.00 0.00 0.00 5.80 R
6436 7624 0.174845 CCGCCATTCCTCGAGTACAA 59.825 55.000 12.31 1.32 0.00 2.41 R
6872 8145 2.574955 CCTCTCGGGAATAGGCCGG 61.575 68.421 0.00 0.00 37.23 6.13 R
7096 8369 5.431420 AATGTAACATGAAGCAACGACAA 57.569 34.783 0.00 0.00 0.00 3.18 R
7795 9120 1.189752 TGAGAGCAGCTCCAGGTAAG 58.810 55.000 19.40 0.00 43.26 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.410673 TCTCAAGGTAGATCATACTGTATTCC 57.589 38.462 0.00 0.00 0.00 3.01
57 58 8.034804 CCGTACTCCATCACAATCAATATATCA 58.965 37.037 0.00 0.00 0.00 2.15
67 68 8.970020 TCACAATCAATATATCAAAAAGCAGGT 58.030 29.630 0.00 0.00 0.00 4.00
74 75 7.823745 ATATATCAAAAAGCAGGTTGTAGGG 57.176 36.000 0.00 0.00 0.00 3.53
75 76 3.306472 TCAAAAAGCAGGTTGTAGGGT 57.694 42.857 0.00 0.00 0.00 4.34
91 92 3.117552 AGGGTTTTACCTCCTCGAGAT 57.882 47.619 15.71 0.00 38.64 2.75
101 103 2.107141 CTCGAGATGGCCCGAACC 59.893 66.667 6.58 0.00 34.17 3.62
105 107 2.285368 AGATGGCCCGAACCTGGA 60.285 61.111 0.00 0.00 0.00 3.86
111 113 1.340600 TGGCCCGAACCTGGATAAAAG 60.341 52.381 0.00 0.00 0.00 2.27
131 133 2.169330 GACCGTGTCCCTACTTTCTCT 58.831 52.381 0.00 0.00 0.00 3.10
137 139 5.510179 CCGTGTCCCTACTTTCTCTTGTTAA 60.510 44.000 0.00 0.00 0.00 2.01
138 140 6.164176 CGTGTCCCTACTTTCTCTTGTTAAT 58.836 40.000 0.00 0.00 0.00 1.40
168 171 0.250770 GATCGCCAATTAGGACCCCC 60.251 60.000 0.00 0.00 41.22 5.40
169 172 0.697854 ATCGCCAATTAGGACCCCCT 60.698 55.000 0.00 0.00 46.62 4.79
170 173 0.030909 TCGCCAATTAGGACCCCCTA 60.031 55.000 0.00 0.00 43.97 3.53
171 174 1.064825 CGCCAATTAGGACCCCCTAT 58.935 55.000 0.00 0.00 44.14 2.57
181 184 1.596895 GACCCCCTATCGAGATCCGC 61.597 65.000 0.00 0.00 38.37 5.54
183 186 1.304547 CCCCTATCGAGATCCGCCT 60.305 63.158 0.00 0.00 38.37 5.52
196 200 0.179015 TCCGCCTGTTTTAGCACCAA 60.179 50.000 0.00 0.00 0.00 3.67
197 201 0.887933 CCGCCTGTTTTAGCACCAAT 59.112 50.000 0.00 0.00 0.00 3.16
227 231 2.359478 CGGTGCGGCTAGGGTTTT 60.359 61.111 0.00 0.00 0.00 2.43
228 232 1.969589 CGGTGCGGCTAGGGTTTTT 60.970 57.895 0.00 0.00 0.00 1.94
254 259 3.363351 GCCAGAGCAAGCAAGCTT 58.637 55.556 0.59 0.59 46.75 3.74
265 270 3.228453 CAAGCAAGCTTGGGGATGATAT 58.772 45.455 27.10 0.00 46.88 1.63
267 272 3.919834 AGCAAGCTTGGGGATGATATTT 58.080 40.909 27.10 0.00 0.00 1.40
284 289 8.843885 ATGATATTTAGTGATCACATGAGTGG 57.156 34.615 27.02 0.00 45.91 4.00
303 308 5.079643 AGTGGCATAATTTTCACCTCTTGT 58.920 37.500 0.00 0.00 0.00 3.16
304 309 5.047802 AGTGGCATAATTTTCACCTCTTGTG 60.048 40.000 0.00 0.00 46.88 3.33
322 327 7.255590 CCTCTTGTGGTCAATTGTTTTACTGAT 60.256 37.037 5.13 0.00 32.82 2.90
366 371 4.394729 TGTTATTAATCAATCGAGGGGCC 58.605 43.478 0.00 0.00 0.00 5.80
368 373 3.814504 ATTAATCAATCGAGGGGCCAT 57.185 42.857 4.39 0.00 0.00 4.40
455 460 1.414158 AGGACGGATCACACTATGGG 58.586 55.000 0.00 0.00 0.00 4.00
456 461 0.249911 GGACGGATCACACTATGGGC 60.250 60.000 0.00 0.00 0.00 5.36
457 462 0.249911 GACGGATCACACTATGGGCC 60.250 60.000 0.00 0.00 0.00 5.80
458 463 0.980754 ACGGATCACACTATGGGCCA 60.981 55.000 9.61 9.61 0.00 5.36
459 464 0.250038 CGGATCACACTATGGGCCAG 60.250 60.000 13.78 0.82 0.00 4.85
460 465 0.839946 GGATCACACTATGGGCCAGT 59.160 55.000 13.78 1.62 0.00 4.00
461 466 1.212935 GGATCACACTATGGGCCAGTT 59.787 52.381 13.78 0.00 0.00 3.16
462 467 2.357154 GGATCACACTATGGGCCAGTTT 60.357 50.000 13.78 0.00 0.00 2.66
463 468 2.969821 TCACACTATGGGCCAGTTTT 57.030 45.000 13.78 0.00 0.00 2.43
464 469 3.237268 TCACACTATGGGCCAGTTTTT 57.763 42.857 13.78 0.00 0.00 1.94
497 502 3.545366 AAAATAAGCCGTCTCCTCCTC 57.455 47.619 0.00 0.00 0.00 3.71
498 503 2.160721 AATAAGCCGTCTCCTCCTCA 57.839 50.000 0.00 0.00 0.00 3.86
499 504 1.698506 ATAAGCCGTCTCCTCCTCAG 58.301 55.000 0.00 0.00 0.00 3.35
500 505 1.038130 TAAGCCGTCTCCTCCTCAGC 61.038 60.000 0.00 0.00 0.00 4.26
501 506 2.757917 GCCGTCTCCTCCTCAGCT 60.758 66.667 0.00 0.00 0.00 4.24
502 507 2.355193 GCCGTCTCCTCCTCAGCTT 61.355 63.158 0.00 0.00 0.00 3.74
503 508 1.893919 GCCGTCTCCTCCTCAGCTTT 61.894 60.000 0.00 0.00 0.00 3.51
504 509 0.610687 CCGTCTCCTCCTCAGCTTTT 59.389 55.000 0.00 0.00 0.00 2.27
505 510 1.404851 CCGTCTCCTCCTCAGCTTTTC 60.405 57.143 0.00 0.00 0.00 2.29
506 511 1.548269 CGTCTCCTCCTCAGCTTTTCT 59.452 52.381 0.00 0.00 0.00 2.52
507 512 2.416701 CGTCTCCTCCTCAGCTTTTCTC 60.417 54.545 0.00 0.00 0.00 2.87
508 513 2.564947 GTCTCCTCCTCAGCTTTTCTCA 59.435 50.000 0.00 0.00 0.00 3.27
509 514 3.197549 GTCTCCTCCTCAGCTTTTCTCAT 59.802 47.826 0.00 0.00 0.00 2.90
510 515 4.404073 GTCTCCTCCTCAGCTTTTCTCATA 59.596 45.833 0.00 0.00 0.00 2.15
511 516 5.026121 TCTCCTCCTCAGCTTTTCTCATAA 58.974 41.667 0.00 0.00 0.00 1.90
512 517 5.128499 TCTCCTCCTCAGCTTTTCTCATAAG 59.872 44.000 0.00 0.00 0.00 1.73
513 518 3.876320 CCTCCTCAGCTTTTCTCATAAGC 59.124 47.826 0.00 0.00 46.47 3.09
517 522 3.926289 GCTTTTCTCATAAGCCGCC 57.074 52.632 0.00 0.00 41.62 6.13
518 523 1.383523 GCTTTTCTCATAAGCCGCCT 58.616 50.000 0.00 0.00 41.62 5.52
519 524 1.332065 GCTTTTCTCATAAGCCGCCTC 59.668 52.381 0.00 0.00 41.62 4.70
520 525 2.911484 CTTTTCTCATAAGCCGCCTCT 58.089 47.619 0.00 0.00 0.00 3.69
521 526 2.604046 TTTCTCATAAGCCGCCTCTC 57.396 50.000 0.00 0.00 0.00 3.20
522 527 1.781786 TTCTCATAAGCCGCCTCTCT 58.218 50.000 0.00 0.00 0.00 3.10
523 528 1.781786 TCTCATAAGCCGCCTCTCTT 58.218 50.000 0.00 0.00 0.00 2.85
524 529 2.945456 TCTCATAAGCCGCCTCTCTTA 58.055 47.619 0.00 0.00 0.00 2.10
525 530 3.501349 TCTCATAAGCCGCCTCTCTTAT 58.499 45.455 0.00 0.00 36.30 1.73
526 531 3.898123 TCTCATAAGCCGCCTCTCTTATT 59.102 43.478 0.00 0.00 34.33 1.40
527 532 4.021894 TCTCATAAGCCGCCTCTCTTATTC 60.022 45.833 0.00 0.00 34.33 1.75
528 533 3.641436 TCATAAGCCGCCTCTCTTATTCA 59.359 43.478 0.00 0.00 34.33 2.57
529 534 4.284490 TCATAAGCCGCCTCTCTTATTCAT 59.716 41.667 0.00 0.00 34.33 2.57
530 535 2.829741 AGCCGCCTCTCTTATTCATC 57.170 50.000 0.00 0.00 0.00 2.92
531 536 1.000283 AGCCGCCTCTCTTATTCATCG 60.000 52.381 0.00 0.00 0.00 3.84
532 537 1.937108 GCCGCCTCTCTTATTCATCGG 60.937 57.143 0.00 0.00 38.72 4.18
533 538 1.337260 CCGCCTCTCTTATTCATCGGG 60.337 57.143 0.00 0.00 32.75 5.14
534 539 1.337260 CGCCTCTCTTATTCATCGGGG 60.337 57.143 0.00 0.00 0.00 5.73
535 540 1.609320 GCCTCTCTTATTCATCGGGGC 60.609 57.143 0.00 0.00 0.00 5.80
536 541 1.974236 CCTCTCTTATTCATCGGGGCT 59.026 52.381 0.00 0.00 0.00 5.19
537 542 2.370189 CCTCTCTTATTCATCGGGGCTT 59.630 50.000 0.00 0.00 0.00 4.35
538 543 3.556004 CCTCTCTTATTCATCGGGGCTTC 60.556 52.174 0.00 0.00 0.00 3.86
539 544 3.309296 TCTCTTATTCATCGGGGCTTCT 58.691 45.455 0.00 0.00 0.00 2.85
540 545 4.480115 TCTCTTATTCATCGGGGCTTCTA 58.520 43.478 0.00 0.00 0.00 2.10
541 546 4.899457 TCTCTTATTCATCGGGGCTTCTAA 59.101 41.667 0.00 0.00 0.00 2.10
542 547 5.365605 TCTCTTATTCATCGGGGCTTCTAAA 59.634 40.000 0.00 0.00 0.00 1.85
543 548 5.365619 TCTTATTCATCGGGGCTTCTAAAC 58.634 41.667 0.00 0.00 0.00 2.01
544 549 3.933861 ATTCATCGGGGCTTCTAAACT 57.066 42.857 0.00 0.00 0.00 2.66
545 550 6.325545 TCTTATTCATCGGGGCTTCTAAACTA 59.674 38.462 0.00 0.00 0.00 2.24
546 551 4.402056 TTCATCGGGGCTTCTAAACTAG 57.598 45.455 0.00 0.00 0.00 2.57
547 552 3.371965 TCATCGGGGCTTCTAAACTAGT 58.628 45.455 0.00 0.00 0.00 2.57
548 553 3.773119 TCATCGGGGCTTCTAAACTAGTT 59.227 43.478 1.12 1.12 0.00 2.24
549 554 4.957954 TCATCGGGGCTTCTAAACTAGTTA 59.042 41.667 8.92 0.00 0.00 2.24
550 555 5.601313 TCATCGGGGCTTCTAAACTAGTTAT 59.399 40.000 8.92 2.25 0.00 1.89
551 556 5.272283 TCGGGGCTTCTAAACTAGTTATG 57.728 43.478 8.92 5.05 0.00 1.90
552 557 4.713321 TCGGGGCTTCTAAACTAGTTATGT 59.287 41.667 8.92 0.00 0.00 2.29
553 558 5.893255 TCGGGGCTTCTAAACTAGTTATGTA 59.107 40.000 8.92 0.00 0.00 2.29
554 559 6.380846 TCGGGGCTTCTAAACTAGTTATGTAA 59.619 38.462 8.92 0.98 0.00 2.41
555 560 7.070322 TCGGGGCTTCTAAACTAGTTATGTAAT 59.930 37.037 8.92 0.00 0.00 1.89
556 561 8.362639 CGGGGCTTCTAAACTAGTTATGTAATA 58.637 37.037 8.92 0.00 0.00 0.98
589 594 7.208225 AGAAGTCTCAACAAATTTTAGAGGC 57.792 36.000 7.47 7.47 0.00 4.70
590 595 5.613358 AGTCTCAACAAATTTTAGAGGCG 57.387 39.130 9.12 0.00 36.15 5.52
591 596 4.455877 AGTCTCAACAAATTTTAGAGGCGG 59.544 41.667 9.12 0.00 36.15 6.13
592 597 3.190535 TCTCAACAAATTTTAGAGGCGGC 59.809 43.478 0.00 0.00 0.00 6.53
593 598 3.153919 TCAACAAATTTTAGAGGCGGCT 58.846 40.909 13.09 13.09 0.00 5.52
594 599 3.572255 TCAACAAATTTTAGAGGCGGCTT 59.428 39.130 14.76 5.90 0.00 4.35
595 600 4.762765 TCAACAAATTTTAGAGGCGGCTTA 59.237 37.500 14.76 4.83 0.00 3.09
596 601 5.417580 TCAACAAATTTTAGAGGCGGCTTAT 59.582 36.000 14.76 8.00 0.00 1.73
597 602 5.914898 ACAAATTTTAGAGGCGGCTTATT 57.085 34.783 14.76 4.81 0.00 1.40
598 603 5.891451 ACAAATTTTAGAGGCGGCTTATTC 58.109 37.500 14.76 0.00 0.00 1.75
599 604 5.652452 ACAAATTTTAGAGGCGGCTTATTCT 59.348 36.000 14.76 8.44 0.00 2.40
600 605 6.152831 ACAAATTTTAGAGGCGGCTTATTCTT 59.847 34.615 14.76 0.23 0.00 2.52
601 606 6.775594 AATTTTAGAGGCGGCTTATTCTTT 57.224 33.333 14.76 0.98 0.00 2.52
602 607 7.875327 AATTTTAGAGGCGGCTTATTCTTTA 57.125 32.000 14.76 0.00 0.00 1.85
603 608 7.875327 ATTTTAGAGGCGGCTTATTCTTTAA 57.125 32.000 14.76 4.18 0.00 1.52
604 609 6.920569 TTTAGAGGCGGCTTATTCTTTAAG 57.079 37.500 14.76 0.00 0.00 1.85
605 610 3.206964 AGAGGCGGCTTATTCTTTAAGC 58.793 45.455 14.76 8.49 46.64 3.09
613 618 4.694339 GCTTATTCTTTAAGCCGAGGAGA 58.306 43.478 6.15 0.00 42.88 3.71
614 619 4.747605 GCTTATTCTTTAAGCCGAGGAGAG 59.252 45.833 6.15 0.00 42.88 3.20
615 620 3.828875 ATTCTTTAAGCCGAGGAGAGG 57.171 47.619 0.00 0.00 0.00 3.69
622 627 3.941081 CCGAGGAGAGGCAGCTTA 58.059 61.111 0.00 0.00 0.00 3.09
623 628 2.435418 CCGAGGAGAGGCAGCTTAT 58.565 57.895 0.00 0.00 0.00 1.73
624 629 0.755686 CCGAGGAGAGGCAGCTTATT 59.244 55.000 0.00 0.00 0.00 1.40
625 630 1.139853 CCGAGGAGAGGCAGCTTATTT 59.860 52.381 0.00 0.00 0.00 1.40
626 631 2.420687 CCGAGGAGAGGCAGCTTATTTT 60.421 50.000 0.00 0.00 0.00 1.82
627 632 3.274288 CGAGGAGAGGCAGCTTATTTTT 58.726 45.455 0.00 0.00 0.00 1.94
650 655 8.611654 TTTTAAGCCGTATGACTTCTTAGTTT 57.388 30.769 0.00 0.00 33.84 2.66
734 739 6.364165 TCGAAGTTACTTATTTTGACACGGAG 59.636 38.462 0.00 0.00 0.00 4.63
735 740 6.364165 CGAAGTTACTTATTTTGACACGGAGA 59.636 38.462 0.00 0.00 0.00 3.71
737 742 8.441312 AAGTTACTTATTTTGACACGGAGAAA 57.559 30.769 0.00 0.00 0.00 2.52
742 747 6.426025 ACTTATTTTGACACGGAGAAAGTACC 59.574 38.462 0.00 0.00 0.00 3.34
746 751 3.659786 TGACACGGAGAAAGTACCATTG 58.340 45.455 0.00 0.00 0.00 2.82
752 758 6.098409 ACACGGAGAAAGTACCATTGATCTAT 59.902 38.462 0.00 0.00 0.00 1.98
755 761 7.070074 ACGGAGAAAGTACCATTGATCTATCTT 59.930 37.037 0.00 0.00 0.00 2.40
1051 1062 3.213402 GCCTCGTCCTCCTCCTCG 61.213 72.222 0.00 0.00 0.00 4.63
1053 1064 2.438614 CTCGTCCTCCTCCTCGCA 60.439 66.667 0.00 0.00 0.00 5.10
1157 1178 5.555966 GCCTTATCTTCCCTTGGATCTAAG 58.444 45.833 11.68 11.68 0.00 2.18
1169 1190 5.335976 CCTTGGATCTAAGACCTTTTGTTGC 60.336 44.000 19.55 0.00 0.00 4.17
1205 1226 1.137872 CGCTCTAGTTGCTCCCATTCT 59.862 52.381 8.36 0.00 0.00 2.40
1221 1242 0.247460 TTCTGTGGCGTCAGATCTGG 59.753 55.000 22.42 8.67 42.84 3.86
1223 1244 0.036952 CTGTGGCGTCAGATCTGGTT 60.037 55.000 22.42 0.00 37.61 3.67
1514 1535 4.442192 GGTGCCTGATACTCTGAACTTAGG 60.442 50.000 0.00 0.00 0.00 2.69
1625 1647 3.756434 GGCTGCATTGTGGTTTCTACTTA 59.244 43.478 0.50 0.00 0.00 2.24
1674 1696 3.133721 GGTTCATAGAGAGGTGCTGACAT 59.866 47.826 0.00 0.00 0.00 3.06
1796 1819 7.790027 AGCATACTCTCTTGTCAAATCTATGT 58.210 34.615 0.00 0.00 0.00 2.29
1932 1955 2.353889 GCTTTCATGCATCTGTCATCGT 59.646 45.455 0.00 0.00 0.00 3.73
1943 1966 5.007430 GCATCTGTCATCGTGATCTTCAATT 59.993 40.000 0.00 0.00 0.00 2.32
2022 2045 1.402968 CCTTGCCAATGGTCTTGATCG 59.597 52.381 0.00 0.00 0.00 3.69
2058 2081 0.397564 TCATGTGCTCTGTCCTTGCA 59.602 50.000 0.00 0.00 0.00 4.08
2174 2197 7.946776 AGATTAATTTGGATATAGCTTGCCACT 59.053 33.333 0.00 0.00 0.00 4.00
2178 2201 6.740944 TTTGGATATAGCTTGCCACTACTA 57.259 37.500 0.00 0.00 0.00 1.82
2201 2224 9.023962 ACTAAGATTGGCATTTCTCAAAATACA 57.976 29.630 1.46 0.00 33.27 2.29
2252 2275 3.901087 CCTAATGGCCCACATGTCA 57.099 52.632 0.00 0.00 40.44 3.58
2295 2318 4.458397 CTCATTGACATGTAGCCTGGAAT 58.542 43.478 0.00 0.00 0.00 3.01
2392 2415 8.378115 AGGGAGAAGGAATGAGATAGATAATG 57.622 38.462 0.00 0.00 0.00 1.90
2479 2502 7.201839 GGAGGACTTACTTGACTGGAGTATTAG 60.202 44.444 0.00 0.00 30.30 1.73
2659 2682 9.793252 ATCACTAATGTTTTGCAGATTTACATC 57.207 29.630 0.00 0.00 0.00 3.06
2691 2714 9.834628 TTTGTTTCATTCGGTATTATCTTCAAC 57.165 29.630 0.00 0.00 0.00 3.18
2692 2715 8.554835 TGTTTCATTCGGTATTATCTTCAACA 57.445 30.769 0.00 0.00 0.00 3.33
2753 2776 1.376543 ATGAGCATTTCGTCTGGCTG 58.623 50.000 0.00 0.00 36.59 4.85
2754 2777 0.674581 TGAGCATTTCGTCTGGCTGG 60.675 55.000 0.00 0.00 36.59 4.85
2782 2805 9.678260 AGTTCTCATCTGCTTTATGTTTCTTAT 57.322 29.630 0.00 0.00 0.00 1.73
3138 3179 4.460382 CCATTTGCACACTGGAACTAGATT 59.540 41.667 0.00 0.00 31.38 2.40
3287 3329 8.287439 TCTTGTTTCTAACATTTTTCACTGGA 57.713 30.769 0.00 0.00 41.79 3.86
3426 3468 6.237901 ACAGTTGTTATATGCTTTGACAGGA 58.762 36.000 0.00 0.00 0.00 3.86
3519 3561 9.609346 GTAAAGTACAATGATAACAGGGTATGT 57.391 33.333 0.00 0.00 46.97 2.29
3563 3605 9.691362 AACATTAACACATAATTTGGACAAGTC 57.309 29.630 0.00 0.00 31.69 3.01
3687 3729 1.079127 TAAGCTCCTTGACGCTGGC 60.079 57.895 0.00 0.00 36.45 4.85
3700 3742 0.886490 CGCTGGCAAGAAGTTGGACT 60.886 55.000 0.00 0.00 33.87 3.85
3892 3934 5.095490 CCTTCAATTCAACAATAGCGAACC 58.905 41.667 0.00 0.00 0.00 3.62
3922 3964 4.220602 CCCCTTTGAACTAACCATTGGAAG 59.779 45.833 10.37 8.83 0.00 3.46
3930 3972 7.291566 TGAACTAACCATTGGAAGGTTCTAAA 58.708 34.615 24.27 12.58 45.98 1.85
4121 4163 3.195396 TGAATTCTGGTGCCTATTTTGCC 59.805 43.478 7.05 0.00 0.00 4.52
4191 4233 0.819259 GCCACTCAACTGTTGCCTGA 60.819 55.000 15.52 0.00 0.00 3.86
4197 4239 2.288666 TCAACTGTTGCCTGAACTCAC 58.711 47.619 15.52 0.00 35.37 3.51
4306 4708 4.122776 TGACACTTCTTTCTGCTCTTGTC 58.877 43.478 0.00 0.00 34.09 3.18
4403 4805 7.744087 GGGTATGCTCAAAATCATACACATA 57.256 36.000 12.56 0.00 44.68 2.29
4444 4846 0.824595 TGCCTTGCATGCAGAACACT 60.825 50.000 21.50 0.00 31.71 3.55
4576 4979 6.089551 CGTTCAGAGTACCAGAACATAACTTG 59.910 42.308 17.47 2.36 41.17 3.16
4577 4980 6.665992 TCAGAGTACCAGAACATAACTTGT 57.334 37.500 0.00 0.00 41.53 3.16
4616 5019 2.393646 GAGCCTTCCAGATCCTGTACT 58.606 52.381 0.00 0.00 0.00 2.73
4650 5053 4.095410 TCTTTACTGCCAATCATTTGCG 57.905 40.909 0.00 0.00 0.00 4.85
4826 5760 4.408993 TCAAATGCTGACAACATTCTCG 57.591 40.909 4.60 0.00 36.74 4.04
5040 5974 7.147312 TCTACCATTGCATTTCTCTTTGTTTG 58.853 34.615 0.00 0.00 0.00 2.93
5061 5995 2.414161 GCCGCTGGTACTGAAAATTGTC 60.414 50.000 0.00 0.00 0.00 3.18
5167 6132 2.028476 ACCTGCATGCGTAAAGTACTCA 60.028 45.455 14.09 0.00 0.00 3.41
5188 6153 5.582550 TCACTTAAGTATCAGTGAGCATCG 58.417 41.667 8.04 0.00 43.63 3.84
5189 6154 5.960936 TCACTTAAGTATCAGTGAGCATCGC 60.961 44.000 8.04 0.00 43.63 4.58
5199 6164 0.177373 TGAGCATCGCTGAGCATCTT 59.823 50.000 4.88 0.00 39.88 2.40
5220 6185 5.911178 TCTTATAGTTGGAGGATGTGGGATT 59.089 40.000 0.00 0.00 0.00 3.01
5225 6190 0.033208 GGAGGATGTGGGATTGGCAA 60.033 55.000 0.68 0.68 0.00 4.52
5331 6296 1.795768 TGTCCAACATCGCTTGAGAC 58.204 50.000 0.00 0.00 0.00 3.36
5358 6323 0.535102 GCATATACAACGCAGGCCCT 60.535 55.000 0.00 0.00 0.00 5.19
5361 6326 0.906066 TATACAACGCAGGCCCTCAA 59.094 50.000 0.00 0.00 0.00 3.02
5415 6380 5.006165 CGCTTTGATAATGTCAAGAGAGGTC 59.994 44.000 0.00 0.00 46.85 3.85
5437 6402 3.344515 GGGGTAGACCAAACTTGACATC 58.655 50.000 0.21 0.00 42.91 3.06
5462 6427 4.862371 AGGAGTCCGTAAAAGAGAGATCT 58.138 43.478 2.76 0.00 0.00 2.75
5466 6431 6.183360 GGAGTCCGTAAAAGAGAGATCTGAAT 60.183 42.308 0.00 0.00 0.00 2.57
5474 6439 4.262891 AGAGAGATCTGAATGACTGGGA 57.737 45.455 0.00 0.00 0.00 4.37
5594 6559 1.497286 AGCCTACCCCAACTTGTTTGA 59.503 47.619 0.00 0.00 37.39 2.69
5595 6560 1.611977 GCCTACCCCAACTTGTTTGAC 59.388 52.381 0.00 0.00 37.39 3.18
5600 6565 2.291282 ACCCCAACTTGTTTGACACTGA 60.291 45.455 0.00 0.00 37.39 3.41
5622 6589 5.825679 TGAAAGGCTTTAAGCACAGAAAGTA 59.174 36.000 19.10 0.00 44.75 2.24
5770 6739 5.286438 TGAGATAAATTCGGACATACGTGG 58.714 41.667 0.00 0.00 34.94 4.94
5797 6766 5.248477 GGCTGGTCATACATAAAGGATAGGA 59.752 44.000 0.00 0.00 0.00 2.94
5833 6802 7.585286 CCATTCAAGTCAATGGTTACAAATG 57.415 36.000 4.32 0.00 45.56 2.32
5882 6851 1.452651 TGACCCGTCCTAGCCTACG 60.453 63.158 4.16 4.16 38.80 3.51
5946 6996 1.003718 ACAGTGGCGCCTAAACCTC 60.004 57.895 29.70 8.96 0.00 3.85
6034 7136 7.639113 ACAAAGTTGAGTCACTTATTTTGGA 57.361 32.000 12.94 0.00 35.87 3.53
6037 7139 6.300354 AGTTGAGTCACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
6086 7189 4.043561 TCTCCTTTCTCCTCTAGACACACT 59.956 45.833 0.00 0.00 32.51 3.55
6088 7191 6.069323 TCTCCTTTCTCCTCTAGACACACTAT 60.069 42.308 0.00 0.00 32.51 2.12
6217 7405 1.424638 CCATGGAGGTAGGGTACAGG 58.575 60.000 5.56 0.00 0.00 4.00
6245 7433 7.555087 AGTGAACAAATCCTGAAATGTCAAAA 58.445 30.769 0.00 0.00 31.88 2.44
6274 7462 4.826556 TGCTGTGTTACAAAAAGCCTTTT 58.173 34.783 11.63 0.00 35.02 2.27
6320 7508 5.335897 GGTTCTTTCTTGCATGTTGAGCATA 60.336 40.000 0.00 0.00 42.33 3.14
6436 7624 5.435686 TTCTGGATATGTTAGTGCTGGTT 57.564 39.130 0.00 0.00 0.00 3.67
6872 8145 3.492829 CCTGCCGAGTAAAGACTATTCCC 60.493 52.174 0.00 0.00 35.45 3.97
7088 8361 3.002348 GCCACTTATCATAGTGCGGAAAC 59.998 47.826 0.00 0.00 43.31 2.78
7111 8384 6.234240 CGATTTTATTGTCGTTGCTTCATG 57.766 37.500 0.00 0.00 33.42 3.07
7337 8654 2.552315 GCAATGGACCTCGTTTTTCTCA 59.448 45.455 0.00 0.00 0.00 3.27
7531 8848 5.296748 ACATTGCAATGTTTAAAGACCACC 58.703 37.500 34.07 0.00 46.95 4.61
7675 9000 0.034059 GGGTGGAGCGGTATCAGATG 59.966 60.000 0.00 0.00 0.00 2.90
7704 9029 2.665603 GTGGAAGCGAGGCCTTCT 59.334 61.111 6.77 4.38 40.76 2.85
7709 9034 1.943340 GGAAGCGAGGCCTTCTAAATG 59.057 52.381 6.77 0.00 40.76 2.32
7750 9075 4.525912 TTAGGGTTTCAGAACTACGTCC 57.474 45.455 0.00 0.00 36.03 4.79
7774 9099 3.737559 TTGCTTATTCCATCACACCCT 57.262 42.857 0.00 0.00 0.00 4.34
7795 9120 8.925700 CACCCTTTCTTTTTGCATACTTATTTC 58.074 33.333 0.00 0.00 0.00 2.17
7839 9167 5.201243 AGTGTATACATCTGTGGTAGCTGA 58.799 41.667 9.18 0.00 0.00 4.26
7840 9168 5.300539 AGTGTATACATCTGTGGTAGCTGAG 59.699 44.000 9.18 0.00 0.00 3.35
7841 9169 4.584743 TGTATACATCTGTGGTAGCTGAGG 59.415 45.833 0.08 0.00 0.00 3.86
7864 9192 1.419381 TCAGTACAAGTGGCTGGTGA 58.581 50.000 0.00 0.00 0.00 4.02
7879 9207 5.221422 TGGCTGGTGAAGGTTCTTATTTTTG 60.221 40.000 0.00 0.00 0.00 2.44
7893 9221 7.546778 TCTTATTTTTGTTTGTTTCTTGCCC 57.453 32.000 0.00 0.00 0.00 5.36
7960 9288 0.179073 AGTGAGTATCCATGCGGCAC 60.179 55.000 4.03 0.00 0.00 5.01
8017 9346 1.867233 CAAGGATGGCATGTACTACGC 59.133 52.381 3.81 0.00 0.00 4.42
8070 9399 8.400186 TCAACATTTAATGCATGAGAGTATGTG 58.600 33.333 0.00 1.73 0.00 3.21
8073 9402 5.739752 TTAATGCATGAGAGTATGTGTGC 57.260 39.130 0.00 0.00 0.00 4.57
8074 9403 3.555527 ATGCATGAGAGTATGTGTGCT 57.444 42.857 0.00 0.00 33.95 4.40
8075 9404 2.624636 TGCATGAGAGTATGTGTGCTG 58.375 47.619 0.00 0.00 33.95 4.41
8152 9490 9.672086 TTTGTATCTGCGGTATTTAATATTTGC 57.328 29.630 0.00 0.00 0.00 3.68
8186 9524 6.545666 AGGTGACTTGTGTGACATTTGATTTA 59.454 34.615 0.00 0.00 37.44 1.40
8187 9525 7.068103 AGGTGACTTGTGTGACATTTGATTTAA 59.932 33.333 0.00 0.00 37.44 1.52
8192 9530 3.917985 GTGTGACATTTGATTTAACGCCC 59.082 43.478 0.00 0.00 0.00 6.13
8196 9534 4.165779 GACATTTGATTTAACGCCCTGTG 58.834 43.478 0.00 0.00 0.00 3.66
8241 9582 3.002246 TGTGAAGAGAAACATGTTGACGC 59.998 43.478 12.82 11.19 0.00 5.19
8249 9590 3.722555 AACATGTTGACGCGTGAATAG 57.277 42.857 20.70 11.36 0.00 1.73
8330 9685 7.892609 TCTTTTAAATAGGTCCCTTTTGCTTC 58.107 34.615 0.00 0.00 0.00 3.86
8331 9686 6.599356 TTTAAATAGGTCCCTTTTGCTTCC 57.401 37.500 0.00 0.00 0.00 3.46
8347 9702 3.119637 TGCTTCCGCTTTTGGCTTATAAC 60.120 43.478 0.00 0.00 39.13 1.89
8353 9708 4.977963 CCGCTTTTGGCTTATAACATCATG 59.022 41.667 0.00 0.00 39.13 3.07
8357 9712 7.165812 CGCTTTTGGCTTATAACATCATGTAAC 59.834 37.037 0.00 0.00 39.13 2.50
8361 9716 8.574251 TTGGCTTATAACATCATGTAACAGTT 57.426 30.769 0.00 0.00 0.00 3.16
8469 9825 9.088987 AGGCTGTAAAAATAGAAGAAAAATCCA 57.911 29.630 0.00 0.00 0.00 3.41
8495 9851 3.306472 AAACAGGGTCTAAAGCACCAA 57.694 42.857 0.00 0.00 35.35 3.67
8496 9852 2.271944 ACAGGGTCTAAAGCACCAAC 57.728 50.000 0.00 0.00 35.35 3.77
8509 9865 6.961359 AAAGCACCAACTTTAGTTTGAAAC 57.039 33.333 0.00 0.00 38.09 2.78
8513 9869 6.096846 AGCACCAACTTTAGTTTGAAACAGAT 59.903 34.615 11.02 0.00 35.83 2.90
8514 9870 6.756542 GCACCAACTTTAGTTTGAAACAGATT 59.243 34.615 11.02 0.00 35.83 2.40
8515 9871 7.254084 GCACCAACTTTAGTTTGAAACAGATTG 60.254 37.037 11.02 7.09 35.83 2.67
8520 9876 1.613437 AGTTTGAAACAGATTGGGGCG 59.387 47.619 11.02 0.00 0.00 6.13
8581 9938 2.106566 ACATCTTGCTCCGAGATCACT 58.893 47.619 0.00 0.00 32.75 3.41
8588 9945 0.891373 CTCCGAGATCACTGTGGTGT 59.109 55.000 8.11 0.00 43.41 4.16
8600 9957 3.249320 CACTGTGGTGTGATCTTGACAAG 59.751 47.826 9.03 9.03 40.12 3.16
8601 9958 2.810274 CTGTGGTGTGATCTTGACAAGG 59.190 50.000 15.13 0.00 0.00 3.61
8627 9984 1.425412 CAAGCTTGGCAAAGTCATGC 58.575 50.000 19.14 0.00 45.67 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.982852 ACGGAATACAGTATGATCTACCTTG 58.017 40.000 0.00 0.00 39.69 3.61
11 12 7.943447 AGTACGGAATACAGTATGATCTACCTT 59.057 37.037 0.00 0.00 39.69 3.50
24 25 4.649088 TGTGATGGAGTACGGAATACAG 57.351 45.455 0.00 0.00 36.09 2.74
29 30 4.545208 TTGATTGTGATGGAGTACGGAA 57.455 40.909 0.00 0.00 0.00 4.30
32 33 8.986477 TGATATATTGATTGTGATGGAGTACG 57.014 34.615 0.00 0.00 0.00 3.67
57 58 5.163385 GGTAAAACCCTACAACCTGCTTTTT 60.163 40.000 0.00 0.00 30.04 1.94
67 68 3.509442 TCGAGGAGGTAAAACCCTACAA 58.491 45.455 0.00 0.00 39.75 2.41
72 73 2.158943 CCATCTCGAGGAGGTAAAACCC 60.159 54.545 13.56 0.00 39.75 4.11
74 75 2.552031 GCCATCTCGAGGAGGTAAAAC 58.448 52.381 20.35 4.96 0.00 2.43
75 76 1.485066 GGCCATCTCGAGGAGGTAAAA 59.515 52.381 20.35 0.00 0.00 1.52
91 92 0.699399 TTTTATCCAGGTTCGGGCCA 59.301 50.000 4.39 0.00 0.00 5.36
101 103 2.236395 AGGGACACGGTCTTTTATCCAG 59.764 50.000 4.41 0.00 32.47 3.86
105 107 5.247792 AGAAAGTAGGGACACGGTCTTTTAT 59.752 40.000 4.41 0.00 32.47 1.40
111 113 2.169330 AGAGAAAGTAGGGACACGGTC 58.831 52.381 0.00 0.00 0.00 4.79
137 139 9.256228 TCCTAATTGGCGATCTAAGTAAGATAT 57.744 33.333 0.00 0.00 39.38 1.63
138 140 8.521176 GTCCTAATTGGCGATCTAAGTAAGATA 58.479 37.037 0.00 0.00 39.38 1.98
144 146 3.071167 GGGTCCTAATTGGCGATCTAAGT 59.929 47.826 0.00 0.00 35.26 2.24
147 149 1.975680 GGGGTCCTAATTGGCGATCTA 59.024 52.381 0.00 0.00 35.26 1.98
160 163 0.410270 GGATCTCGATAGGGGGTCCT 59.590 60.000 0.00 0.00 46.96 3.85
168 171 2.802787 AAACAGGCGGATCTCGATAG 57.197 50.000 7.64 0.00 42.43 2.08
169 172 3.552273 GCTAAAACAGGCGGATCTCGATA 60.552 47.826 7.64 0.00 42.43 2.92
170 173 2.803492 GCTAAAACAGGCGGATCTCGAT 60.803 50.000 7.64 0.00 42.43 3.59
171 174 1.470979 GCTAAAACAGGCGGATCTCGA 60.471 52.381 7.64 0.00 42.43 4.04
181 184 5.585047 GGACTACTATTGGTGCTAAAACAGG 59.415 44.000 0.00 0.00 0.00 4.00
183 186 5.249852 AGGGACTACTATTGGTGCTAAAACA 59.750 40.000 0.00 0.00 36.02 2.83
196 200 1.400530 GCACCGCCAGGGACTACTAT 61.401 60.000 0.00 0.00 43.47 2.12
197 201 2.056223 GCACCGCCAGGGACTACTA 61.056 63.158 0.00 0.00 43.47 1.82
227 231 4.329545 GCTCTGGCACCACGGGAA 62.330 66.667 0.00 0.00 38.54 3.97
254 259 6.762077 TGTGATCACTAAATATCATCCCCA 57.238 37.500 25.55 0.00 34.77 4.96
258 263 8.933807 CCACTCATGTGATCACTAAATATCATC 58.066 37.037 25.55 0.00 46.55 2.92
265 270 4.284829 TGCCACTCATGTGATCACTAAA 57.715 40.909 25.55 7.12 46.55 1.85
267 272 5.612725 TTATGCCACTCATGTGATCACTA 57.387 39.130 25.55 13.07 46.55 2.74
349 354 2.549992 CGATGGCCCCTCGATTGATTAA 60.550 50.000 17.43 0.00 38.38 1.40
354 359 2.947938 AAGCGATGGCCCCTCGATTG 62.948 60.000 22.58 5.36 42.46 2.67
356 361 3.164269 AAGCGATGGCCCCTCGAT 61.164 61.111 24.36 17.49 41.24 3.59
357 362 4.161295 CAAGCGATGGCCCCTCGA 62.161 66.667 24.36 0.00 41.24 4.04
408 413 6.042093 TCCTTTCTACTCACAAGATTGTCAGT 59.958 38.462 7.41 7.41 44.80 3.41
409 414 6.459066 TCCTTTCTACTCACAAGATTGTCAG 58.541 40.000 0.00 0.00 39.91 3.51
414 419 6.498651 TCCTTCTCCTTTCTACTCACAAGATT 59.501 38.462 0.00 0.00 0.00 2.40
425 430 3.700038 GTGATCCGTCCTTCTCCTTTCTA 59.300 47.826 0.00 0.00 0.00 2.10
428 433 2.028020 GTGTGATCCGTCCTTCTCCTTT 60.028 50.000 0.00 0.00 0.00 3.11
431 436 1.187087 AGTGTGATCCGTCCTTCTCC 58.813 55.000 0.00 0.00 0.00 3.71
476 481 3.263425 TGAGGAGGAGACGGCTTATTTTT 59.737 43.478 0.00 0.00 0.00 1.94
477 482 2.838202 TGAGGAGGAGACGGCTTATTTT 59.162 45.455 0.00 0.00 0.00 1.82
478 483 2.432510 CTGAGGAGGAGACGGCTTATTT 59.567 50.000 0.00 0.00 0.00 1.40
479 484 2.035632 CTGAGGAGGAGACGGCTTATT 58.964 52.381 0.00 0.00 0.00 1.40
480 485 1.698506 CTGAGGAGGAGACGGCTTAT 58.301 55.000 0.00 0.00 0.00 1.73
481 486 1.038130 GCTGAGGAGGAGACGGCTTA 61.038 60.000 0.00 0.00 33.73 3.09
482 487 2.355193 GCTGAGGAGGAGACGGCTT 61.355 63.158 0.00 0.00 33.73 4.35
483 488 2.757917 GCTGAGGAGGAGACGGCT 60.758 66.667 0.00 0.00 33.73 5.52
484 489 1.893919 AAAGCTGAGGAGGAGACGGC 61.894 60.000 0.00 0.00 36.33 5.68
485 490 0.610687 AAAAGCTGAGGAGGAGACGG 59.389 55.000 0.00 0.00 0.00 4.79
486 491 1.548269 AGAAAAGCTGAGGAGGAGACG 59.452 52.381 0.00 0.00 0.00 4.18
487 492 2.564947 TGAGAAAAGCTGAGGAGGAGAC 59.435 50.000 0.00 0.00 0.00 3.36
488 493 2.894731 TGAGAAAAGCTGAGGAGGAGA 58.105 47.619 0.00 0.00 0.00 3.71
489 494 3.910568 ATGAGAAAAGCTGAGGAGGAG 57.089 47.619 0.00 0.00 0.00 3.69
490 495 4.383552 GCTTATGAGAAAAGCTGAGGAGGA 60.384 45.833 0.00 0.00 44.75 3.71
491 496 3.876320 GCTTATGAGAAAAGCTGAGGAGG 59.124 47.826 0.00 0.00 44.75 4.30
492 497 3.876320 GGCTTATGAGAAAAGCTGAGGAG 59.124 47.826 7.65 0.00 46.81 3.69
493 498 3.878778 GGCTTATGAGAAAAGCTGAGGA 58.121 45.455 7.65 0.00 46.81 3.71
498 503 1.065126 AGGCGGCTTATGAGAAAAGCT 60.065 47.619 5.25 0.00 46.81 3.74
499 504 1.332065 GAGGCGGCTTATGAGAAAAGC 59.668 52.381 14.76 0.00 46.90 3.51
500 505 2.869192 GAGAGGCGGCTTATGAGAAAAG 59.131 50.000 14.76 0.00 0.00 2.27
501 506 2.501723 AGAGAGGCGGCTTATGAGAAAA 59.498 45.455 14.76 0.00 0.00 2.29
502 507 2.111384 AGAGAGGCGGCTTATGAGAAA 58.889 47.619 14.76 0.00 0.00 2.52
503 508 1.781786 AGAGAGGCGGCTTATGAGAA 58.218 50.000 14.76 0.00 0.00 2.87
504 509 1.781786 AAGAGAGGCGGCTTATGAGA 58.218 50.000 14.76 0.00 0.00 3.27
505 510 3.951775 ATAAGAGAGGCGGCTTATGAG 57.048 47.619 14.76 0.00 36.31 2.90
506 511 3.641436 TGAATAAGAGAGGCGGCTTATGA 59.359 43.478 14.76 0.00 37.38 2.15
507 512 3.995199 TGAATAAGAGAGGCGGCTTATG 58.005 45.455 14.76 0.00 37.38 1.90
508 513 4.619394 CGATGAATAAGAGAGGCGGCTTAT 60.619 45.833 14.76 4.91 38.57 1.73
509 514 3.305403 CGATGAATAAGAGAGGCGGCTTA 60.305 47.826 14.76 0.90 0.00 3.09
510 515 2.546795 CGATGAATAAGAGAGGCGGCTT 60.547 50.000 14.76 2.75 0.00 4.35
511 516 1.000283 CGATGAATAAGAGAGGCGGCT 60.000 52.381 13.09 13.09 0.00 5.52
512 517 1.423395 CGATGAATAAGAGAGGCGGC 58.577 55.000 0.00 0.00 0.00 6.53
513 518 1.337260 CCCGATGAATAAGAGAGGCGG 60.337 57.143 0.00 0.00 37.41 6.13
514 519 1.337260 CCCCGATGAATAAGAGAGGCG 60.337 57.143 0.00 0.00 0.00 5.52
515 520 1.609320 GCCCCGATGAATAAGAGAGGC 60.609 57.143 0.00 0.00 0.00 4.70
516 521 1.974236 AGCCCCGATGAATAAGAGAGG 59.026 52.381 0.00 0.00 0.00 3.69
517 522 3.323403 AGAAGCCCCGATGAATAAGAGAG 59.677 47.826 0.00 0.00 0.00 3.20
518 523 3.309296 AGAAGCCCCGATGAATAAGAGA 58.691 45.455 0.00 0.00 0.00 3.10
519 524 3.760580 AGAAGCCCCGATGAATAAGAG 57.239 47.619 0.00 0.00 0.00 2.85
520 525 5.130477 AGTTTAGAAGCCCCGATGAATAAGA 59.870 40.000 0.00 0.00 0.00 2.10
521 526 5.368989 AGTTTAGAAGCCCCGATGAATAAG 58.631 41.667 0.00 0.00 0.00 1.73
522 527 5.367945 AGTTTAGAAGCCCCGATGAATAA 57.632 39.130 0.00 0.00 0.00 1.40
523 528 5.601313 ACTAGTTTAGAAGCCCCGATGAATA 59.399 40.000 0.00 0.00 0.00 1.75
524 529 3.933861 AGTTTAGAAGCCCCGATGAAT 57.066 42.857 0.00 0.00 0.00 2.57
525 530 3.773119 ACTAGTTTAGAAGCCCCGATGAA 59.227 43.478 0.00 0.00 0.00 2.57
526 531 3.371965 ACTAGTTTAGAAGCCCCGATGA 58.628 45.455 0.00 0.00 0.00 2.92
527 532 3.821421 ACTAGTTTAGAAGCCCCGATG 57.179 47.619 0.00 0.00 0.00 3.84
528 533 5.365895 ACATAACTAGTTTAGAAGCCCCGAT 59.634 40.000 14.49 0.00 0.00 4.18
529 534 4.713321 ACATAACTAGTTTAGAAGCCCCGA 59.287 41.667 14.49 0.00 0.00 5.14
530 535 5.019785 ACATAACTAGTTTAGAAGCCCCG 57.980 43.478 14.49 0.00 0.00 5.73
563 568 8.784043 GCCTCTAAAATTTGTTGAGACTTCTAA 58.216 33.333 13.54 0.00 0.00 2.10
564 569 7.117812 CGCCTCTAAAATTTGTTGAGACTTCTA 59.882 37.037 13.54 0.00 0.00 2.10
565 570 6.073003 CGCCTCTAAAATTTGTTGAGACTTCT 60.073 38.462 13.54 0.00 0.00 2.85
566 571 6.080406 CGCCTCTAAAATTTGTTGAGACTTC 58.920 40.000 13.54 3.73 0.00 3.01
567 572 5.048713 CCGCCTCTAAAATTTGTTGAGACTT 60.049 40.000 13.54 0.00 0.00 3.01
568 573 4.455877 CCGCCTCTAAAATTTGTTGAGACT 59.544 41.667 13.54 0.00 0.00 3.24
569 574 4.723248 CCGCCTCTAAAATTTGTTGAGAC 58.277 43.478 13.54 4.95 0.00 3.36
570 575 3.190535 GCCGCCTCTAAAATTTGTTGAGA 59.809 43.478 13.54 5.14 0.00 3.27
571 576 3.191371 AGCCGCCTCTAAAATTTGTTGAG 59.809 43.478 0.00 0.23 0.00 3.02
572 577 3.153919 AGCCGCCTCTAAAATTTGTTGA 58.846 40.909 0.00 0.00 0.00 3.18
573 578 3.575965 AGCCGCCTCTAAAATTTGTTG 57.424 42.857 0.00 0.00 0.00 3.33
574 579 5.914898 ATAAGCCGCCTCTAAAATTTGTT 57.085 34.783 0.00 0.00 0.00 2.83
575 580 5.652452 AGAATAAGCCGCCTCTAAAATTTGT 59.348 36.000 0.00 0.00 0.00 2.83
576 581 6.136541 AGAATAAGCCGCCTCTAAAATTTG 57.863 37.500 0.00 0.00 0.00 2.32
577 582 6.775594 AAGAATAAGCCGCCTCTAAAATTT 57.224 33.333 0.00 0.00 0.00 1.82
578 583 6.775594 AAAGAATAAGCCGCCTCTAAAATT 57.224 33.333 0.00 0.00 0.00 1.82
579 584 7.468768 GCTTAAAGAATAAGCCGCCTCTAAAAT 60.469 37.037 8.63 0.00 42.88 1.82
580 585 6.183360 GCTTAAAGAATAAGCCGCCTCTAAAA 60.183 38.462 8.63 0.00 42.88 1.52
581 586 5.296035 GCTTAAAGAATAAGCCGCCTCTAAA 59.704 40.000 8.63 0.00 42.88 1.85
582 587 4.814771 GCTTAAAGAATAAGCCGCCTCTAA 59.185 41.667 8.63 0.00 42.88 2.10
583 588 4.377897 GCTTAAAGAATAAGCCGCCTCTA 58.622 43.478 8.63 0.00 42.88 2.43
584 589 3.206964 GCTTAAAGAATAAGCCGCCTCT 58.793 45.455 8.63 0.00 42.88 3.69
585 590 3.610786 GCTTAAAGAATAAGCCGCCTC 57.389 47.619 8.63 0.00 42.88 4.70
591 596 4.694339 TCTCCTCGGCTTAAAGAATAAGC 58.306 43.478 10.88 10.88 46.64 3.09
592 597 5.293560 CCTCTCCTCGGCTTAAAGAATAAG 58.706 45.833 0.00 0.00 0.00 1.73
593 598 4.443034 GCCTCTCCTCGGCTTAAAGAATAA 60.443 45.833 0.00 0.00 44.17 1.40
594 599 3.069729 GCCTCTCCTCGGCTTAAAGAATA 59.930 47.826 0.00 0.00 44.17 1.75
595 600 2.158885 GCCTCTCCTCGGCTTAAAGAAT 60.159 50.000 0.00 0.00 44.17 2.40
596 601 1.207329 GCCTCTCCTCGGCTTAAAGAA 59.793 52.381 0.00 0.00 44.17 2.52
597 602 0.824759 GCCTCTCCTCGGCTTAAAGA 59.175 55.000 0.00 0.00 44.17 2.52
598 603 3.371087 GCCTCTCCTCGGCTTAAAG 57.629 57.895 0.00 0.00 44.17 1.85
605 610 0.755686 AATAAGCTGCCTCTCCTCGG 59.244 55.000 0.00 0.00 0.00 4.63
606 611 2.611225 AAATAAGCTGCCTCTCCTCG 57.389 50.000 0.00 0.00 0.00 4.63
624 629 8.611654 AACTAAGAAGTCATACGGCTTAAAAA 57.388 30.769 0.00 0.00 33.75 1.94
625 630 8.611654 AAACTAAGAAGTCATACGGCTTAAAA 57.388 30.769 0.00 0.00 33.75 1.52
626 631 9.362539 CTAAACTAAGAAGTCATACGGCTTAAA 57.637 33.333 0.00 0.00 33.75 1.52
627 632 7.977853 CCTAAACTAAGAAGTCATACGGCTTAA 59.022 37.037 0.00 0.00 33.75 1.85
628 633 7.340232 TCCTAAACTAAGAAGTCATACGGCTTA 59.660 37.037 0.00 0.00 33.75 3.09
629 634 6.154021 TCCTAAACTAAGAAGTCATACGGCTT 59.846 38.462 0.00 0.00 33.75 4.35
630 635 5.655532 TCCTAAACTAAGAAGTCATACGGCT 59.344 40.000 0.00 0.00 33.75 5.52
631 636 5.899299 TCCTAAACTAAGAAGTCATACGGC 58.101 41.667 0.00 0.00 33.75 5.68
714 719 7.858583 ACTTTCTCCGTGTCAAAATAAGTAAC 58.141 34.615 0.00 0.00 0.00 2.50
715 720 8.981647 GTACTTTCTCCGTGTCAAAATAAGTAA 58.018 33.333 0.00 0.00 30.22 2.24
716 721 7.599998 GGTACTTTCTCCGTGTCAAAATAAGTA 59.400 37.037 0.00 0.00 0.00 2.24
728 733 4.759782 AGATCAATGGTACTTTCTCCGTG 58.240 43.478 0.00 0.00 0.00 4.94
734 739 9.202273 CTAGCAAGATAGATCAATGGTACTTTC 57.798 37.037 0.00 0.00 31.93 2.62
735 740 8.709308 ACTAGCAAGATAGATCAATGGTACTTT 58.291 33.333 0.00 0.00 31.93 2.66
737 742 7.847711 ACTAGCAAGATAGATCAATGGTACT 57.152 36.000 0.00 0.00 31.93 2.73
746 751 9.988815 TTCAGGAAATTACTAGCAAGATAGATC 57.011 33.333 0.00 0.00 0.00 2.75
752 758 8.918202 TCTTTTTCAGGAAATTACTAGCAAGA 57.082 30.769 0.00 0.00 0.00 3.02
813 821 5.948162 ACAGGCAAATTCAGTGATTCTATGT 59.052 36.000 0.00 0.00 0.00 2.29
1036 1047 2.438614 TGCGAGGAGGAGGACGAG 60.439 66.667 0.00 0.00 0.00 4.18
1051 1062 3.112709 GAAGACGGCGGTGAGTGC 61.113 66.667 13.24 0.00 0.00 4.40
1053 1064 4.719369 GCGAAGACGGCGGTGAGT 62.719 66.667 13.24 0.00 40.15 3.41
1066 1077 2.126071 CGGAGAAGCGAAGGCGAA 60.126 61.111 0.00 0.00 46.35 4.70
1183 1204 1.195115 ATGGGAGCAACTAGAGCGAA 58.805 50.000 0.00 0.00 37.01 4.70
1205 1226 0.320683 CAACCAGATCTGACGCCACA 60.321 55.000 24.62 0.00 0.00 4.17
1674 1696 5.843673 TTGTATGCAAGACAAGACCAAAA 57.156 34.783 12.23 0.00 33.03 2.44
1811 1834 8.634335 TGATCACAAGGAAACAAATGAATAGA 57.366 30.769 0.00 0.00 0.00 1.98
1812 1835 9.865321 ATTGATCACAAGGAAACAAATGAATAG 57.135 29.630 0.00 0.00 39.46 1.73
1932 1955 9.656040 CCATTTATTTCACCAAATTGAAGATCA 57.344 29.630 0.00 0.00 36.84 2.92
1943 1966 7.556275 GTCTCATACTCCCATTTATTTCACCAA 59.444 37.037 0.00 0.00 0.00 3.67
2022 2045 1.154338 GAGTTGCAGCATCACGCAC 60.154 57.895 2.55 0.00 46.13 5.34
2153 2176 6.605119 AGTAGTGGCAAGCTATATCCAAATT 58.395 36.000 0.00 0.00 0.00 1.82
2161 2184 6.759272 CCAATCTTAGTAGTGGCAAGCTATA 58.241 40.000 0.00 0.00 0.00 1.31
2178 2201 8.370182 AGTTGTATTTTGAGAAATGCCAATCTT 58.630 29.630 0.00 0.00 37.14 2.40
2201 2224 3.110705 ACTATCAGTGAGGCATGGAGTT 58.889 45.455 0.00 0.00 0.00 3.01
2252 2275 2.456577 GCATGGGGTAACATTTCCACT 58.543 47.619 0.00 0.00 39.74 4.00
2256 2279 2.733956 TGAGGCATGGGGTAACATTTC 58.266 47.619 0.00 0.00 39.74 2.17
2295 2318 5.144832 TCATGGCAGTAGCTACCTATGTTA 58.855 41.667 20.31 6.38 41.70 2.41
2677 2700 9.860898 AAAGAAAGCATTGTTGAAGATAATACC 57.139 29.630 0.00 0.00 0.00 2.73
2747 2770 2.630158 CAGATGAGAACTTCCAGCCAG 58.370 52.381 0.00 0.00 0.00 4.85
2753 2776 6.749923 AACATAAAGCAGATGAGAACTTCC 57.250 37.500 0.10 0.00 0.00 3.46
2754 2777 8.038492 AGAAACATAAAGCAGATGAGAACTTC 57.962 34.615 0.10 0.00 0.00 3.01
2782 2805 4.760530 ATCTCCAGCTTTGTACTGCATA 57.239 40.909 0.00 0.00 33.65 3.14
3138 3179 4.405358 AGCAAATTGTTGAACCTTCTTGGA 59.595 37.500 0.00 0.00 36.83 3.53
3147 3188 3.391965 TGGCATCAGCAAATTGTTGAAC 58.608 40.909 15.99 11.15 40.85 3.18
3148 3189 3.747854 TGGCATCAGCAAATTGTTGAA 57.252 38.095 15.99 0.00 40.85 2.69
3205 3246 8.688747 TGTAATGCATCACATATTAATCCACA 57.311 30.769 0.00 0.00 38.34 4.17
3426 3468 6.152661 TGTTTTTGTCAGTCTCTCCAACAAAT 59.847 34.615 0.00 0.00 38.99 2.32
3504 3546 7.872061 ATGGAAGATACATACCCTGTTATCA 57.128 36.000 0.00 0.00 39.39 2.15
3687 3729 7.173907 ACTGAATATGTCAAGTCCAACTTCTTG 59.826 37.037 0.00 0.00 36.03 3.02
3700 3742 5.241403 ACCCACTTCACTGAATATGTCAA 57.759 39.130 0.00 0.00 35.22 3.18
3892 3934 2.678336 GTTAGTTCAAAGGGGAGATGCG 59.322 50.000 0.00 0.00 0.00 4.73
4121 4163 6.130298 TGGTTGGAATATTATTCAAGTGCG 57.870 37.500 16.27 0.00 0.00 5.34
4191 4233 6.228258 TCCTAATAAAGCAAAGTCGTGAGTT 58.772 36.000 0.00 0.00 0.00 3.01
4197 4239 6.565234 TCTCTCTCCTAATAAAGCAAAGTCG 58.435 40.000 0.00 0.00 0.00 4.18
4306 4708 3.849951 AGCTGGGTGCCGATACCG 61.850 66.667 0.00 0.00 44.23 4.02
4403 4805 6.239148 GGCAAGAAAGAAAGGAGATGAAAAGT 60.239 38.462 0.00 0.00 0.00 2.66
4412 4814 2.624838 TGCAAGGCAAGAAAGAAAGGAG 59.375 45.455 0.00 0.00 34.76 3.69
4577 4980 1.209383 CTCGCGAGTTCCTCACGAA 59.791 57.895 27.79 0.00 42.92 3.85
4579 4982 2.202492 CCTCGCGAGTTCCTCACG 60.202 66.667 32.41 12.50 37.38 4.35
4580 4983 1.137825 CTCCTCGCGAGTTCCTCAC 59.862 63.158 32.41 0.00 33.51 3.51
4581 4984 2.701780 GCTCCTCGCGAGTTCCTCA 61.702 63.158 32.41 9.68 41.10 3.86
4582 4985 2.103340 GCTCCTCGCGAGTTCCTC 59.897 66.667 32.41 14.07 41.10 3.71
4583 4986 3.453679 GGCTCCTCGCGAGTTCCT 61.454 66.667 32.41 0.00 41.10 3.36
4584 4987 2.892542 GAAGGCTCCTCGCGAGTTCC 62.893 65.000 32.41 27.04 41.10 3.62
4585 4988 1.517475 GAAGGCTCCTCGCGAGTTC 60.517 63.158 32.41 24.18 41.10 3.01
4586 4989 2.574399 GAAGGCTCCTCGCGAGTT 59.426 61.111 32.41 20.61 41.10 3.01
4587 4990 3.453679 GGAAGGCTCCTCGCGAGT 61.454 66.667 32.41 14.83 41.10 4.18
4633 5036 4.717233 AATTCGCAAATGATTGGCAGTA 57.283 36.364 5.26 0.00 37.02 2.74
4756 5212 6.157471 CACATTCCTATCCAGGGATCATCATA 59.843 42.308 3.62 0.00 38.20 2.15
4783 5300 7.576750 TGAAAATAGACACGACACTACATTC 57.423 36.000 0.00 0.00 0.00 2.67
4826 5760 8.443953 AGATCAAAATTCAATCTAGCAGGTAC 57.556 34.615 0.00 0.00 0.00 3.34
4910 5844 5.934402 ATAGTTAAGAAGTCGGTGGTCAT 57.066 39.130 0.00 0.00 0.00 3.06
4911 5845 5.733620 AATAGTTAAGAAGTCGGTGGTCA 57.266 39.130 0.00 0.00 0.00 4.02
4913 5847 6.594788 TGTAATAGTTAAGAAGTCGGTGGT 57.405 37.500 0.00 0.00 0.00 4.16
4914 5848 7.010183 CACATGTAATAGTTAAGAAGTCGGTGG 59.990 40.741 0.00 0.00 0.00 4.61
5040 5974 1.539827 ACAATTTTCAGTACCAGCGGC 59.460 47.619 0.00 0.00 0.00 6.53
5061 5995 5.885230 TTGCAATAAGGAACAGATCAGTG 57.115 39.130 0.00 0.00 0.00 3.66
5125 6059 7.201857 GCAGGTTTTTAGATGCTCAAATAGGAT 60.202 37.037 0.00 0.00 39.30 3.24
5136 6070 2.187707 CGCATGCAGGTTTTTAGATGC 58.812 47.619 19.57 0.00 39.14 3.91
5167 6132 4.098654 AGCGATGCTCACTGATACTTAAGT 59.901 41.667 13.68 13.68 30.62 2.24
5186 6151 3.636764 TCCAACTATAAGATGCTCAGCGA 59.363 43.478 0.00 0.00 0.00 4.93
5187 6152 3.982475 TCCAACTATAAGATGCTCAGCG 58.018 45.455 0.00 0.00 0.00 5.18
5188 6153 4.039730 TCCTCCAACTATAAGATGCTCAGC 59.960 45.833 0.00 0.00 0.00 4.26
5189 6154 5.798125 TCCTCCAACTATAAGATGCTCAG 57.202 43.478 0.00 0.00 0.00 3.35
5190 6155 5.604231 ACATCCTCCAACTATAAGATGCTCA 59.396 40.000 0.00 0.00 35.60 4.26
5191 6156 5.931146 CACATCCTCCAACTATAAGATGCTC 59.069 44.000 0.00 0.00 35.60 4.26
5192 6157 5.221803 CCACATCCTCCAACTATAAGATGCT 60.222 44.000 0.00 0.00 35.60 3.79
5193 6158 4.999950 CCACATCCTCCAACTATAAGATGC 59.000 45.833 0.00 0.00 35.60 3.91
5199 6164 4.350816 CCAATCCCACATCCTCCAACTATA 59.649 45.833 0.00 0.00 0.00 1.31
5331 6296 1.268335 GCGTTGTATATGCCCAAACCG 60.268 52.381 0.00 0.00 32.34 4.44
5415 6380 1.071071 TGTCAAGTTTGGTCTACCCCG 59.929 52.381 0.00 0.00 34.29 5.73
5462 6427 5.191522 TCTTTGGTGATATCCCAGTCATTCA 59.808 40.000 11.35 0.00 32.49 2.57
5466 6431 4.536090 AGTTCTTTGGTGATATCCCAGTCA 59.464 41.667 11.35 0.00 32.49 3.41
5474 6439 5.132648 TCCATGGCTAGTTCTTTGGTGATAT 59.867 40.000 6.96 0.00 0.00 1.63
5594 6559 3.287222 TGTGCTTAAAGCCTTTCAGTGT 58.713 40.909 0.00 0.00 41.51 3.55
5595 6560 3.565482 TCTGTGCTTAAAGCCTTTCAGTG 59.435 43.478 0.00 0.00 41.51 3.66
5600 6565 6.709018 TTACTTTCTGTGCTTAAAGCCTTT 57.291 33.333 0.00 0.00 41.51 3.11
5622 6589 2.437281 TGGCCCACATGACACAAAATTT 59.563 40.909 0.00 0.00 0.00 1.82
5770 6739 5.546621 TCCTTTATGTATGACCAGCCTAC 57.453 43.478 0.00 0.00 0.00 3.18
5833 6802 6.151817 AGCACCAAAGATATGGAAAAAGAGAC 59.848 38.462 0.00 0.00 43.54 3.36
5882 6851 0.332972 AACAAGATGAAGGGAGGGGC 59.667 55.000 0.00 0.00 0.00 5.80
6034 7136 5.206587 ACACTATGTTATACTCCCTCCGTT 58.793 41.667 0.00 0.00 0.00 4.44
6037 7139 8.653036 AATAGACACTATGTTATACTCCCTCC 57.347 38.462 0.00 0.00 0.00 4.30
6217 7405 6.089249 ACATTTCAGGATTTGTTCACTTCC 57.911 37.500 0.00 0.00 0.00 3.46
6245 7433 5.983118 GCTTTTTGTAACACAGCATAGGTTT 59.017 36.000 0.00 0.00 0.00 3.27
6274 7462 4.558178 CATGCTCCATGCTAAAAACAACA 58.442 39.130 0.00 0.00 43.37 3.33
6320 7508 7.868415 GCATGTAAGTTAGAGAATAGGAATCGT 59.132 37.037 0.00 0.00 0.00 3.73
6436 7624 0.174845 CCGCCATTCCTCGAGTACAA 59.825 55.000 12.31 1.32 0.00 2.41
6550 7767 7.763172 ATCTTCTACAAAAGAGTTAGATGCG 57.237 36.000 0.00 0.00 38.60 4.73
6872 8145 2.574955 CCTCTCGGGAATAGGCCGG 61.575 68.421 0.00 0.00 37.23 6.13
7088 8361 5.794945 ACATGAAGCAACGACAATAAAATCG 59.205 36.000 0.00 0.00 43.97 3.34
7096 8369 5.431420 AATGTAACATGAAGCAACGACAA 57.569 34.783 0.00 0.00 0.00 3.18
7101 8374 5.527951 TGGACAAATGTAACATGAAGCAAC 58.472 37.500 0.00 0.00 0.00 4.17
7111 8384 6.974622 CAGAATAAGGCATGGACAAATGTAAC 59.025 38.462 0.00 0.00 0.00 2.50
7665 8990 8.251026 TCCACGTATATGATTTCATCTGATACC 58.749 37.037 0.00 0.00 37.76 2.73
7675 9000 4.386049 CCTCGCTTCCACGTATATGATTTC 59.614 45.833 0.00 0.00 0.00 2.17
7704 9029 9.866655 AATCAGGAACTAGCATTAATCCATTTA 57.133 29.630 0.00 0.00 36.02 1.40
7709 9034 6.881602 CCCTAATCAGGAACTAGCATTAATCC 59.118 42.308 0.00 0.00 45.91 3.01
7750 9075 3.131046 GGTGTGATGGAATAAGCAAAGGG 59.869 47.826 0.00 0.00 0.00 3.95
7795 9120 1.189752 TGAGAGCAGCTCCAGGTAAG 58.810 55.000 19.40 0.00 43.26 2.34
7798 9123 1.342874 ACTATGAGAGCAGCTCCAGGT 60.343 52.381 19.40 14.82 43.26 4.00
7839 9167 2.037772 CAGCCACTTGTACTGAACTCCT 59.962 50.000 0.00 0.00 33.10 3.69
7840 9168 2.417719 CAGCCACTTGTACTGAACTCC 58.582 52.381 0.00 0.00 33.10 3.85
7841 9169 2.224305 ACCAGCCACTTGTACTGAACTC 60.224 50.000 0.00 0.00 33.10 3.01
7901 9229 3.303938 TGAAAAGGAGGAATGCAACCAA 58.696 40.909 14.25 0.00 0.00 3.67
7902 9230 2.956132 TGAAAAGGAGGAATGCAACCA 58.044 42.857 14.25 0.00 0.00 3.67
7903 9231 4.335400 TTTGAAAAGGAGGAATGCAACC 57.665 40.909 0.00 0.00 0.00 3.77
7960 9288 0.901124 CAGAGGGGAAGTCCAGACAG 59.099 60.000 0.00 0.00 37.91 3.51
8066 9395 2.556144 ACATGACAGACAGCACACAT 57.444 45.000 0.00 0.00 0.00 3.21
8068 9397 1.193203 CGAACATGACAGACAGCACAC 59.807 52.381 0.00 0.00 0.00 3.82
8070 9399 1.783284 TCGAACATGACAGACAGCAC 58.217 50.000 0.00 0.00 0.00 4.40
8152 9490 4.155826 TCACACAAGTCACCTCAAAAGTTG 59.844 41.667 0.00 0.00 0.00 3.16
8165 9503 6.129457 GCGTTAAATCAAATGTCACACAAGTC 60.129 38.462 0.00 0.00 0.00 3.01
8192 9530 2.912025 GCACCACAACCCCCACAG 60.912 66.667 0.00 0.00 0.00 3.66
8200 9538 2.411290 CAACCGTGGCACCACAAC 59.589 61.111 19.38 0.00 46.47 3.32
8241 9582 5.739752 TGATCTCCAAAATGCTATTCACG 57.260 39.130 0.00 0.00 0.00 4.35
8249 9590 1.137675 GGGCCTTGATCTCCAAAATGC 59.862 52.381 0.84 0.00 33.76 3.56
8308 9662 5.184287 CGGAAGCAAAAGGGACCTATTTAAA 59.816 40.000 0.00 0.00 0.00 1.52
8309 9663 4.703093 CGGAAGCAAAAGGGACCTATTTAA 59.297 41.667 0.00 0.00 0.00 1.52
8313 9667 2.420058 CGGAAGCAAAAGGGACCTAT 57.580 50.000 0.00 0.00 0.00 2.57
8442 9798 9.929180 GGATTTTTCTTCTATTTTTACAGCCTT 57.071 29.630 0.00 0.00 0.00 4.35
8443 9799 9.088987 TGGATTTTTCTTCTATTTTTACAGCCT 57.911 29.630 0.00 0.00 0.00 4.58
8444 9800 9.705290 TTGGATTTTTCTTCTATTTTTACAGCC 57.295 29.630 0.00 0.00 0.00 4.85
8473 9829 3.637769 TGGTGCTTTAGACCCTGTTTTT 58.362 40.909 0.00 0.00 31.84 1.94
8474 9830 3.306472 TGGTGCTTTAGACCCTGTTTT 57.694 42.857 0.00 0.00 31.84 2.43
8492 9848 6.701400 CCCAATCTGTTTCAAACTAAAGTTGG 59.299 38.462 1.10 8.62 38.44 3.77
8493 9849 6.701400 CCCCAATCTGTTTCAAACTAAAGTTG 59.299 38.462 1.10 0.73 38.44 3.16
8495 9851 5.221441 GCCCCAATCTGTTTCAAACTAAAGT 60.221 40.000 1.10 0.00 0.00 2.66
8496 9852 5.230182 GCCCCAATCTGTTTCAAACTAAAG 58.770 41.667 1.10 0.00 0.00 1.85
8504 9860 0.179004 ACACGCCCCAATCTGTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
8520 9876 6.425988 GCAATAAGTTGTAGTGGGCGACAC 62.426 50.000 1.61 0.00 42.67 3.67
8581 9938 2.849942 CCTTGTCAAGATCACACCACA 58.150 47.619 14.42 0.00 0.00 4.17
8588 9945 1.820519 GGCATTGCCTTGTCAAGATCA 59.179 47.619 20.66 8.52 46.69 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.