AutoCloner

Multiple sequence alignment - TraesCS5A01G108800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G108800	chr5A	100.000	4111	0	0	1	4111	195640070	195635960	0.000000e+00	7592
1	TraesCS5A01G108800	chr5A	90.704	1065	85	10	3051	4111	76917978	76919032	0.000000e+00	1406
2	TraesCS5A01G108800	chr5A	90.763	1061	85	8	3053	4111	569303763	569302714	0.000000e+00	1404
3	TraesCS5A01G108800	chr5D	93.915	2005	73	8	932	2933	173758540	173756582	0.000000e+00	2981
4	TraesCS5A01G108800	chr5D	95.586	589	23	2	1	586	173759124	173758536	0.000000e+00	941
5	TraesCS5A01G108800	chr5D	78.085	867	149	30	1745	2596	127251901	127251061	1.020000e-140	510
6	TraesCS5A01G108800	chr5D	86.080	352	43	4	235	585	205564865	205565211	1.400000e-99	374
7	TraesCS5A01G108800	chr5B	94.976	1453	31	9	1598	3049	184764093	184765504	0.000000e+00	2241
8	TraesCS5A01G108800	chr5B	94.635	671	22	1	932	1602	184755519	184756175	0.000000e+00	1027
9	TraesCS5A01G108800	chr5B	96.780	590	15	3	1	586	184754934	184755523	0.000000e+00	981
10	TraesCS5A01G108800	chr5B	87.500	360	28	9	2056	2400	297115666	297116023	2.300000e-107	399
11	TraesCS5A01G108800	chr5B	79.362	596	102	15	2282	2867	465548570	465547986	2.300000e-107	399
12	TraesCS5A01G108800	chr5B	75.441	851	154	41	1752	2591	139573144	139573950	3.020000e-96	363
13	TraesCS5A01G108800	chr5B	93.277	238	12	2	2	237	115017640	115017405	8.460000e-92	348
14	TraesCS5A01G108800	chr5B	90.598	234	18	2	1	232	115008781	115008550	1.440000e-79	307
15	TraesCS5A01G108800	chr4D	91.525	1062	77	7	3051	4111	88912313	88911264	0.000000e+00	1450
16	TraesCS5A01G108800	chr4D	85.243	1274	154	22	1729	2983	96491169	96489911	0.000000e+00	1280
17	TraesCS5A01G108800	chr4D	81.641	719	96	18	1729	2436	15259961	15259268	7.710000e-157	564
18	TraesCS5A01G108800	chr4D	95.702	349	15	0	587	935	15597555	15597207	2.770000e-156	562
19	TraesCS5A01G108800	chr4D	81.279	438	69	11	2445	2873	456512586	456512153	3.940000e-90	342
20	TraesCS5A01G108800	chr1D	91.132	1060	88	4	3053	4111	230800750	230799696	0.000000e+00	1432
21	TraesCS5A01G108800	chr1D	90.789	1064	86	8	3051	4111	214598270	214597216	0.000000e+00	1411
22	TraesCS5A01G108800	chr1D	86.456	1329	129	25	1729	3014	139056688	139058008	0.000000e+00	1410
23	TraesCS5A01G108800	chr1D	97.668	343	8	0	587	929	326148268	326147926	1.270000e-164	590
24	TraesCS5A01G108800	chr1D	96.210	343	13	0	587	929	108260403	108260745	2.770000e-156	562
25	TraesCS5A01G108800	chr1D	89.444	360	34	3	231	586	413727015	413727374	6.270000e-123	451
26	TraesCS5A01G108800	chr1D	86.184	152	21	0	932	1083	413727370	413727521	9.140000e-37	165
27	TraesCS5A01G108800	chr1D	89.623	106	8	1	2947	3049	139057968	139058073	9.270000e-27	132
28	TraesCS5A01G108800	chr3D	91.210	1058	81	8	3055	4109	443778548	443779596	0.000000e+00	1428
29	TraesCS5A01G108800	chr3D	91.107	1057	72	6	3053	4109	443771399	443772433	0.000000e+00	1411
30	TraesCS5A01G108800	chr3D	90.320	1064	94	5	3048	4111	421867494	421868548	0.000000e+00	1386
31	TraesCS5A01G108800	chr3D	90.598	234	18	3	2	232	277103155	277103387	1.440000e-79	307
32	TraesCS5A01G108800	chr3D	91.892	74	6	0	1732	1805	8557482	8557409	2.020000e-18	104
33	TraesCS5A01G108800	chr2D	90.543	1068	85	9	3051	4109	373801778	373802838	0.000000e+00	1399
34	TraesCS5A01G108800	chr4A	84.425	931	128	9	1984	2907	482222776	482223696	0.000000e+00	900
35	TraesCS5A01G108800	chr4A	84.962	266	32	6	1729	1989	482207834	482208096	3.150000e-66	263
36	TraesCS5A01G108800	chr4B	85.497	593	75	7	2324	2909	136290179	136289591	3.510000e-170	608
37	TraesCS5A01G108800	chr4B	80.361	499	79	16	2375	2863	498388804	498389293	1.090000e-95	361
38	TraesCS5A01G108800	chr4B	89.212	241	14	9	1	237	348952607	348952839	1.450000e-74	291
39	TraesCS5A01G108800	chr7A	96.100	359	12	2	587	943	269961534	269961176	5.920000e-163	584
40	TraesCS5A01G108800	chr7A	77.066	593	121	12	2281	2863	4607889	4608476	1.100000e-85	327
41	TraesCS5A01G108800	chr1A	97.376	343	9	0	587	929	423920386	423920728	5.920000e-163	584
42	TraesCS5A01G108800	chr1A	96.210	343	13	0	587	929	423918131	423918473	2.770000e-156	562
43	TraesCS5A01G108800	chr1A	85.808	458	41	5	1729	2185	549485772	549485338	8.050000e-127	464
44	TraesCS5A01G108800	chr1A	83.660	153	23	2	932	1083	510616751	510616902	4.280000e-30	143
45	TraesCS5A01G108800	chr1A	93.151	73	5	0	2977	3049	549471589	549471517	1.560000e-19	108
46	TraesCS5A01G108800	chrUn	96.512	344	12	0	586	929	32960683	32961026	1.660000e-158	569
47	TraesCS5A01G108800	chr3A	96.000	350	14	0	586	935	675348020	675347671	1.660000e-158	569
48	TraesCS5A01G108800	chr6D	96.210	343	13	0	587	929	457729203	457729545	2.770000e-156	562
49	TraesCS5A01G108800	chr7D	89.916	357	33	3	231	585	100887062	100887417	1.350000e-124	457
50	TraesCS5A01G108800	chr7D	86.969	353	42	2	235	586	512701245	512700896	1.070000e-105	394
51	TraesCS5A01G108800	chr1B	88.579	359	37	3	231	586	558263856	558264213	2.270000e-117	433
52	TraesCS5A01G108800	chr7B	87.395	357	37	5	231	585	57047194	57047544	1.780000e-108	403
53	TraesCS5A01G108800	chr7B	86.798	356	40	4	235	586	544452567	544452215	1.390000e-104	390
54	TraesCS5A01G108800	chr7B	89.451	237	15	8	1	232	296363510	296363279	1.450000e-74	291
55	TraesCS5A01G108800	chr3B	84.578	415	55	5	2506	2914	386413089	386412678	1.780000e-108	403
56	TraesCS5A01G108800	chr3B	90.295	237	17	5	1	233	223934814	223934580	5.160000e-79	305
57	TraesCS5A01G108800	chr3B	90.295	237	14	7	2	232	373185138	373184905	6.680000e-78	302
58	TraesCS5A01G108800	chr3B	93.243	74	5	0	1732	1805	10393091	10393018	4.340000e-20	110

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G108800	chr5A	195635960	195640070	4110	True	7592	7592	100.0000	1	4111	1	chr5A.!!$R1	4110
1	TraesCS5A01G108800	chr5A	76917978	76919032	1054	False	1406	1406	90.7040	3051	4111	1	chr5A.!!$F1	1060
2	TraesCS5A01G108800	chr5A	569302714	569303763	1049	True	1404	1404	90.7630	3053	4111	1	chr5A.!!$R2	1058
3	TraesCS5A01G108800	chr5D	173756582	173759124	2542	True	1961	2981	94.7505	1	2933	2	chr5D.!!$R2	2932
4	TraesCS5A01G108800	chr5D	127251061	127251901	840	True	510	510	78.0850	1745	2596	1	chr5D.!!$R1	851
5	TraesCS5A01G108800	chr5B	184764093	184765504	1411	False	2241	2241	94.9760	1598	3049	1	chr5B.!!$F2	1451
6	TraesCS5A01G108800	chr5B	184754934	184756175	1241	False	1004	1027	95.7075	1	1602	2	chr5B.!!$F4	1601
7	TraesCS5A01G108800	chr5B	465547986	465548570	584	True	399	399	79.3620	2282	2867	1	chr5B.!!$R3	585
8	TraesCS5A01G108800	chr5B	139573144	139573950	806	False	363	363	75.4410	1752	2591	1	chr5B.!!$F1	839
9	TraesCS5A01G108800	chr4D	88911264	88912313	1049	True	1450	1450	91.5250	3051	4111	1	chr4D.!!$R3	1060
10	TraesCS5A01G108800	chr4D	96489911	96491169	1258	True	1280	1280	85.2430	1729	2983	1	chr4D.!!$R4	1254
11	TraesCS5A01G108800	chr4D	15259268	15259961	693	True	564	564	81.6410	1729	2436	1	chr4D.!!$R1	707
12	TraesCS5A01G108800	chr1D	230799696	230800750	1054	True	1432	1432	91.1320	3053	4111	1	chr1D.!!$R2	1058
13	TraesCS5A01G108800	chr1D	214597216	214598270	1054	True	1411	1411	90.7890	3051	4111	1	chr1D.!!$R1	1060
14	TraesCS5A01G108800	chr1D	139056688	139058073	1385	False	771	1410	88.0395	1729	3049	2	chr1D.!!$F2	1320
15	TraesCS5A01G108800	chr1D	413727015	413727521	506	False	308	451	87.8140	231	1083	2	chr1D.!!$F3	852
16	TraesCS5A01G108800	chr3D	443778548	443779596	1048	False	1428	1428	91.2100	3055	4109	1	chr3D.!!$F4	1054
17	TraesCS5A01G108800	chr3D	443771399	443772433	1034	False	1411	1411	91.1070	3053	4109	1	chr3D.!!$F3	1056
18	TraesCS5A01G108800	chr3D	421867494	421868548	1054	False	1386	1386	90.3200	3048	4111	1	chr3D.!!$F2	1063
19	TraesCS5A01G108800	chr2D	373801778	373802838	1060	False	1399	1399	90.5430	3051	4109	1	chr2D.!!$F1	1058
20	TraesCS5A01G108800	chr4A	482222776	482223696	920	False	900	900	84.4250	1984	2907	1	chr4A.!!$F2	923
21	TraesCS5A01G108800	chr4B	136289591	136290179	588	True	608	608	85.4970	2324	2909	1	chr4B.!!$R1	585
22	TraesCS5A01G108800	chr7A	4607889	4608476	587	False	327	327	77.0660	2281	2863	1	chr7A.!!$F1	582
23	TraesCS5A01G108800	chr1A	423918131	423920728	2597	False	573	584	96.7930	587	929	2	chr1A.!!$F2	342

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
612	620	1.153229	CCGGTTTAGCTAGGCCCAC	60.153	63.158	0.0	0.0	0.0	4.61	F
1477	3740	0.395862	CTGGAGAAGGGGACGAGCTA	60.396	60.000	0.0	0.0	0.0	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1670	3933	0.037160	TCTCCAATCAGCAGCAGCAA	59.963	50.0	3.17	0.0	45.49	3.91	R
3261	5673	0.171455	GGACGTCATCGAGCTGAACT	59.829	55.0	18.91	0.0	40.62	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
173	176	9.950680	GTTCATCTTGTGTTTCTCTTTGATTTA	57.049	29.630	0.00	0.00	0.00	1.40
389	393	8.786826	TTTCACCAAGAAATACGTGATTAGAT	57.213	30.769	0.00	0.00	41.17	1.98
592	600	9.624697	TTAATTGTGAGCAATGTTTCTGTTATC	57.375	29.630	0.00	0.00	43.89	1.75
612	620	1.153229	CCGGTTTAGCTAGGCCCAC	60.153	63.158	0.00	0.00	0.00	4.61
905	3168	1.517832	CTACAACCTCCGGAGCAGG	59.482	63.158	26.87	16.47	0.00	4.85
931	3194	2.850695	AGGACCCCTGGTTCTACTAG	57.149	55.000	0.00	0.00	40.28	2.57
932	3195	2.009165	AGGACCCCTGGTTCTACTAGT	58.991	52.381	0.00	0.00	40.28	2.57
933	3196	2.386113	AGGACCCCTGGTTCTACTAGTT	59.614	50.000	0.00	0.00	40.28	2.24
934	3197	3.179685	GGACCCCTGGTTCTACTAGTTT	58.820	50.000	0.00	0.00	35.25	2.66
1104	3367	1.778334	GACCCAAACGGACAAAATGC	58.222	50.000	0.00	0.00	34.64	3.56
1190	3453	2.502492	CGGGGCGTGAGGAGATGAT	61.502	63.158	0.00	0.00	0.00	2.45
1227	3490	4.479993	GCAGCAGGATCCGGCAGT	62.480	66.667	33.95	15.51	39.53	4.40
1455	3718	1.551452	AGAGGTGGAAGAAGAGGTCG	58.449	55.000	0.00	0.00	0.00	4.79
1477	3740	0.395862	CTGGAGAAGGGGACGAGCTA	60.396	60.000	0.00	0.00	0.00	3.32
1562	3825	1.300465	CGACACAGTGCTGAGCTGT	60.300	57.895	5.83	0.52	46.86	4.40
1654	3917	3.982241	GCTGCTGGGTGTTGTGCC	61.982	66.667	0.00	0.00	0.00	5.01
1664	3927	2.253452	GTTGTGCCGCTGCTGAAG	59.747	61.111	0.70	0.00	38.71	3.02
1697	3960	1.198713	GCTGATTGGAGAGGGAGACA	58.801	55.000	0.00	0.00	0.00	3.41
1704	3967	0.616111	GGAGAGGGAGACAGAGGCAA	60.616	60.000	0.00	0.00	0.00	4.52
1919	4217	0.526310	GCTAGCCAAGCCAATTTCGC	60.526	55.000	2.29	0.00	46.25	4.70
1932	4230	3.755628	TTCGCGAGAAGGACCCGG	61.756	66.667	9.59	0.00	46.92	5.73
2320	4654	2.362077	ACGAATTGTTCAAGCAAAGCCT	59.638	40.909	0.00	0.00	31.63	4.58
2321	4655	2.727798	CGAATTGTTCAAGCAAAGCCTG	59.272	45.455	0.00	0.00	31.63	4.85
2443	4778	3.391296	AGGCTCACTTGTTAACTTGGAGA	59.609	43.478	7.22	1.07	0.00	3.71
2542	4879	3.069318	GAAGAGGTCGGCCGAGGT	61.069	66.667	31.97	19.60	40.50	3.85
2678	5019	0.402121	GGGCAAGGAGGTCTGTCTTT	59.598	55.000	0.00	0.00	0.00	2.52
2686	5027	1.620819	GAGGTCTGTCTTTGAGGAGCA	59.379	52.381	0.00	0.00	0.00	4.26
2856	5203	3.489229	GCTTCAAAATCTTATGGCCGGTC	60.489	47.826	0.00	0.00	0.00	4.79
2999	5401	0.185175	GTGGTCTTGGGTTTGGAGGT	59.815	55.000	0.00	0.00	0.00	3.85
3000	5402	0.184933	TGGTCTTGGGTTTGGAGGTG	59.815	55.000	0.00	0.00	0.00	4.00
3001	5403	0.539669	GGTCTTGGGTTTGGAGGTGG	60.540	60.000	0.00	0.00	0.00	4.61
3002	5404	0.476771	GTCTTGGGTTTGGAGGTGGA	59.523	55.000	0.00	0.00	0.00	4.02
3003	5405	0.771127	TCTTGGGTTTGGAGGTGGAG	59.229	55.000	0.00	0.00	0.00	3.86
3004	5406	0.251341	CTTGGGTTTGGAGGTGGAGG	60.251	60.000	0.00	0.00	0.00	4.30
3005	5407	0.699577	TTGGGTTTGGAGGTGGAGGA	60.700	55.000	0.00	0.00	0.00	3.71
3006	5408	1.133809	TGGGTTTGGAGGTGGAGGAG	61.134	60.000	0.00	0.00	0.00	3.69
3007	5409	1.685820	GGTTTGGAGGTGGAGGAGG	59.314	63.158	0.00	0.00	0.00	4.30
3014	5416	4.035102	GGTGGAGGAGGTGGTGGC	62.035	72.222	0.00	0.00	0.00	5.01
3049	5460	2.422597	CAACGGTGGTGAAGATGCTTA	58.577	47.619	0.00	0.00	0.00	3.09
3121	5533	7.416101	CGCAAGATCTATCTAGGAGATGCATAA	60.416	40.741	0.00	0.00	35.65	1.90
3141	5553	1.985116	AACGAGAGGGGGAGAGTGC	60.985	63.158	0.00	0.00	0.00	4.40
3155	5567	2.341176	GTGCGTCCACGTACCCTT	59.659	61.111	8.94	0.00	46.64	3.95
3202	5614	3.250744	CAACACGGTTGATGTAGTCGAT	58.749	45.455	10.21	0.00	0.00	3.59
3253	5665	0.321919	ACGTACGGCACCTCTGAGTA	60.322	55.000	21.06	0.00	0.00	2.59
3254	5666	0.806868	CGTACGGCACCTCTGAGTAA	59.193	55.000	7.57	0.00	0.00	2.24
3261	5673	2.426522	GCACCTCTGAGTAATGCACAA	58.573	47.619	16.42	0.00	36.30	3.33
3321	5733	0.112606	AGTGTCGAGGGAGAGTTCCA	59.887	55.000	0.00	0.00	45.98	3.53
3365	5777	1.276138	TGATGGTGAAGTGATCTGCGT	59.724	47.619	0.00	0.00	0.00	5.24
3454	5868	3.063997	CGGCTAGGAATCAATGTTGTGTC	59.936	47.826	0.00	0.00	0.00	3.67
3466	5880	3.386768	TGTTGTGTCTTCTAGAGGTGC	57.613	47.619	1.31	0.00	0.00	5.01
3467	5881	2.037251	TGTTGTGTCTTCTAGAGGTGCC	59.963	50.000	1.31	0.00	0.00	5.01
3468	5882	1.267121	TGTGTCTTCTAGAGGTGCCC	58.733	55.000	1.31	0.00	0.00	5.36
3469	5883	0.537653	GTGTCTTCTAGAGGTGCCCC	59.462	60.000	1.31	0.00	0.00	5.80
3470	5884	0.617820	TGTCTTCTAGAGGTGCCCCC	60.618	60.000	1.31	0.00	0.00	5.40
3547	5966	1.972075	GTAGGAGGGATCCTACTTGGC	59.028	57.143	21.80	1.30	43.45	4.52
3750	6189	1.697432	CCCATATAGTTTGCCGAGGGA	59.303	52.381	0.00	0.00	37.22	4.20
3754	6193	0.839946	ATAGTTTGCCGAGGGATGCT	59.160	50.000	0.00	0.00	0.00	3.79
3761	6200	3.211288	CGAGGGATGCTCGGAACT	58.789	61.111	0.00	0.00	40.27	3.01
3791	6230	0.110486	ACCCGATACGTACCCGGTAT	59.890	55.000	26.46	16.73	41.53	2.73
3858	6298	8.655935	ATGAATCTTTACCTCTTGACCATTTT	57.344	30.769	0.00	0.00	0.00	1.82
3871	6311	3.071023	TGACCATTTTGAGACTCCTCGTT	59.929	43.478	0.00	0.00	42.33	3.85
3972	6416	2.388232	CGTTAAGCGTGCAGACCCC	61.388	63.158	0.00	0.00	35.54	4.95
4014	6459	2.564947	GACATGACCAAGACACCTCTCT	59.435	50.000	0.00	0.00	0.00	3.10
4040	6485	3.495434	ATAACCAACAACGGAACCTGA	57.505	42.857	0.00	0.00	0.00	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	3.265479	CCTTGGAGGAGAGGTCTTGAATT	59.735	47.826	0.00	0.00	37.67	2.17
173	176	2.225753	ACTTGGAGATGGGGAAGAGAGT	60.226	50.000	0.00	0.00	0.00	3.24
585	593	1.935933	AGCTAAACCGGCGATAACAG	58.064	50.000	9.30	0.00	34.52	3.16
592	600	2.588034	GGCCTAGCTAAACCGGCG	60.588	66.667	13.81	0.00	43.38	6.46
745	753	1.004745	AGCCGGGCAATAGGGATAATG	59.995	52.381	23.09	0.00	0.00	1.90
815	823	3.437795	GTCGCGTCGGAGGGAGAA	61.438	66.667	5.77	0.00	33.67	2.87
988	3251	2.094234	GCTCGGCCATTTTGTTACCAAT	60.094	45.455	2.24	0.00	0.00	3.16
1226	3489	0.802607	GCCCAGATTCGACGTCTCAC	60.803	60.000	14.70	2.60	0.00	3.51
1227	3490	1.248101	TGCCCAGATTCGACGTCTCA	61.248	55.000	14.70	0.00	0.00	3.27
1280	3543	1.317613	CTGCCTTGCTACACCACAAA	58.682	50.000	0.00	0.00	0.00	2.83
1455	3718	2.232298	CTCGTCCCCTTCTCCAGCAC	62.232	65.000	0.00	0.00	0.00	4.40
1670	3933	0.037160	TCTCCAATCAGCAGCAGCAA	59.963	50.000	3.17	0.00	45.49	3.91
1697	3960	2.078665	ACCCACCAGTGTTGCCTCT	61.079	57.895	0.00	0.00	0.00	3.69
1704	3967	0.693092	ACTGTACCACCCACCAGTGT	60.693	55.000	0.00	0.00	36.82	3.55
1919	4217	0.455005	GTAGTTCCGGGTCCTTCTCG	59.545	60.000	0.00	0.00	40.13	4.04
1932	4230	0.531200	CCTCCACCTCGGTGTAGTTC	59.469	60.000	14.51	0.00	44.02	3.01
2008	4306	5.876460	GCCAATACTTCTTGCCATTTTGATT	59.124	36.000	0.00	0.00	0.00	2.57
2320	4654	1.069775	GACCTACCCTTGAAACCCCA	58.930	55.000	0.00	0.00	0.00	4.96
2321	4655	1.069775	TGACCTACCCTTGAAACCCC	58.930	55.000	0.00	0.00	0.00	4.95
2443	4778	5.530171	GTGCACCATCACTATCTTCATCATT	59.470	40.000	5.22	0.00	34.29	2.57
2856	5203	0.593773	CCGAAAGCAAAACCACCACG	60.594	55.000	0.00	0.00	0.00	4.94
3049	5460	1.472480	GCATGCTACGTTTCCCAACAT	59.528	47.619	11.37	0.00	32.54	2.71
3121	5533	0.900647	CACTCTCCCCCTCTCGTTGT	60.901	60.000	0.00	0.00	0.00	3.32
3141	5553	1.135575	GTCTACAAGGGTACGTGGACG	60.136	57.143	0.00	0.00	46.33	4.79
3179	5591	2.154963	CGACTACATCAACCGTGTTGTG	59.845	50.000	13.95	13.28	38.02	3.33
3253	5665	1.882912	TCGAGCTGAACTTGTGCATT	58.117	45.000	0.00	0.00	0.00	3.56
3254	5666	1.736126	CATCGAGCTGAACTTGTGCAT	59.264	47.619	0.00	0.00	0.00	3.96
3261	5673	0.171455	GGACGTCATCGAGCTGAACT	59.829	55.000	18.91	0.00	40.62	3.01
3802	6242	4.353737	CGATAGTATTCGAACACCGGAAA	58.646	43.478	9.46	0.00	41.62	3.13
3858	6298	2.014857	CGGACATAACGAGGAGTCTCA	58.985	52.381	1.47	0.00	39.95	3.27
3871	6311	1.886542	CCGGATGAGATCACGGACATA	59.113	52.381	0.00	0.00	42.14	2.29
3972	6416	2.649331	ACATAGTTCTCGAACCCGTG	57.351	50.000	6.20	5.86	42.06	4.94
4040	6485	9.236006	GAATATGTAGGAACCAATATGAGCATT	57.764	33.333	0.00	0.00	0.00	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.