Multiple sequence alignment - TraesCS5A01G108400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G108400 chr5A 100.000 5352 0 0 1 5352 193917529 193922880 0.000000e+00 9884.0
1 TraesCS5A01G108400 chr5A 88.330 497 48 9 1 491 604725478 604724986 5.970000e-164 588.0
2 TraesCS5A01G108400 chr5A 95.489 266 11 1 2703 2967 193919966 193919701 1.780000e-114 424.0
3 TraesCS5A01G108400 chr5A 95.489 266 11 1 2173 2438 193920495 193920231 1.780000e-114 424.0
4 TraesCS5A01G108400 chr5A 88.119 101 11 1 280 380 595938030 595937931 9.420000e-23 119.0
5 TraesCS5A01G108400 chr5A 97.143 35 1 0 673 707 123606458 123606424 5.790000e-05 60.2
6 TraesCS5A01G108400 chr5A 97.143 35 1 0 673 707 124913699 124913665 5.790000e-05 60.2
7 TraesCS5A01G108400 chr5D 95.167 1614 46 19 3179 4772 138898446 138896845 0.000000e+00 2519.0
8 TraesCS5A01G108400 chr5D 94.718 1136 34 7 1338 2467 138899918 138898803 0.000000e+00 1742.0
9 TraesCS5A01G108400 chr5D 93.786 515 14 8 2471 2967 138898583 138899097 0.000000e+00 758.0
10 TraesCS5A01G108400 chr5D 97.229 433 12 0 914 1346 138900518 138900086 0.000000e+00 734.0
11 TraesCS5A01G108400 chr5D 93.622 439 28 0 4914 5352 138896773 138896335 0.000000e+00 656.0
12 TraesCS5A01G108400 chr5D 91.463 82 7 0 703 784 512215748 512215667 4.380000e-21 113.0
13 TraesCS5A01G108400 chr5D 88.312 77 9 0 704 780 495547195 495547271 5.710000e-15 93.5
14 TraesCS5A01G108400 chr5B 94.346 1415 53 13 779 2183 188802510 188801113 0.000000e+00 2145.0
15 TraesCS5A01G108400 chr5B 94.213 985 37 7 3634 4608 188794096 188793122 0.000000e+00 1485.0
16 TraesCS5A01G108400 chr5B 96.296 459 16 1 3181 3639 188800958 188800501 0.000000e+00 752.0
17 TraesCS5A01G108400 chr5B 85.496 524 46 12 2471 2967 282145318 282145838 2.210000e-143 520.0
18 TraesCS5A01G108400 chr5B 88.591 298 27 4 2173 2467 282145838 282145545 6.590000e-94 355.0
19 TraesCS5A01G108400 chr5B 88.024 167 7 4 2976 3130 188801118 188800953 9.150000e-43 185.0
20 TraesCS5A01G108400 chr6B 91.985 549 39 5 4802 5348 46771460 46772005 0.000000e+00 765.0
21 TraesCS5A01G108400 chr6B 97.059 34 1 0 673 706 221727256 221727223 2.080000e-04 58.4
22 TraesCS5A01G108400 chr2B 91.985 549 36 4 4801 5348 531048934 531049475 0.000000e+00 763.0
23 TraesCS5A01G108400 chr7B 90.672 536 42 7 4801 5332 80075670 80075139 0.000000e+00 706.0
24 TraesCS5A01G108400 chr4A 91.561 474 34 1 206 673 225980987 225980514 0.000000e+00 649.0
25 TraesCS5A01G108400 chr4A 88.718 195 15 4 485 673 225979731 225979538 1.160000e-56 231.0
26 TraesCS5A01G108400 chr4A 90.541 74 6 1 4648 4720 642488058 642488131 4.410000e-16 97.1
27 TraesCS5A01G108400 chr4A 87.013 77 10 0 704 780 740953338 740953262 2.660000e-13 87.9
28 TraesCS5A01G108400 chr4A 82.609 92 15 1 696 787 713374685 713374775 4.440000e-11 80.5
29 TraesCS5A01G108400 chr4A 93.023 43 3 0 670 712 673026696 673026738 4.470000e-06 63.9
30 TraesCS5A01G108400 chr2A 87.786 524 28 9 2471 2968 749057627 749058140 9.990000e-162 580.0
31 TraesCS5A01G108400 chr2A 93.243 296 17 1 2175 2467 749058138 749057843 2.960000e-117 433.0
32 TraesCS5A01G108400 chr2A 94.595 37 2 0 673 709 335165409 335165373 2.080000e-04 58.4
33 TraesCS5A01G108400 chr2A 94.286 35 1 1 673 706 34791664 34791630 1.000000e-02 52.8
34 TraesCS5A01G108400 chr1A 85.714 567 56 12 4803 5348 532456994 532457556 4.650000e-160 575.0
35 TraesCS5A01G108400 chr1A 90.909 77 7 0 704 780 443660896 443660972 2.640000e-18 104.0
36 TraesCS5A01G108400 chr1A 94.444 36 2 0 673 708 53313666 53313631 7.490000e-04 56.5
37 TraesCS5A01G108400 chr3B 86.389 529 57 8 4802 5317 609325486 609324960 1.010000e-156 564.0
38 TraesCS5A01G108400 chr2D 82.705 584 55 23 4801 5352 7406502 7405933 1.350000e-130 477.0
39 TraesCS5A01G108400 chr4B 81.495 562 73 22 4797 5348 584504868 584505408 2.960000e-117 433.0
40 TraesCS5A01G108400 chr4B 91.892 74 6 0 60 133 651150914 651150841 2.640000e-18 104.0
41 TraesCS5A01G108400 chr4B 90.541 74 6 1 4648 4720 395502208 395502281 4.410000e-16 97.1
42 TraesCS5A01G108400 chr4B 93.651 63 4 0 725 787 80678299 80678361 1.590000e-15 95.3
43 TraesCS5A01G108400 chr4B 92.308 65 5 0 706 770 673473634 673473570 5.710000e-15 93.5
44 TraesCS5A01G108400 chr3D 95.833 216 9 0 5132 5347 604231514 604231729 3.070000e-92 350.0
45 TraesCS5A01G108400 chr3D 85.465 344 26 6 4804 5147 604231179 604231498 2.390000e-88 337.0
46 TraesCS5A01G108400 chr3D 90.541 74 6 1 4648 4720 165883071 165883144 4.410000e-16 97.1
47 TraesCS5A01G108400 chr3D 90.541 74 6 1 4648 4720 427787865 427787938 4.410000e-16 97.1
48 TraesCS5A01G108400 chr6A 77.351 521 86 18 2474 2964 422341039 422341557 4.080000e-71 279.0
49 TraesCS5A01G108400 chr6A 84.000 300 33 9 2175 2467 422341559 422341268 1.900000e-69 274.0
50 TraesCS5A01G108400 chr6A 91.549 71 5 1 4651 4720 149941897 149941827 4.410000e-16 97.1
51 TraesCS5A01G108400 chr1B 92.857 70 5 0 4651 4720 365506329 365506398 9.480000e-18 102.0
52 TraesCS5A01G108400 chr7D 90.541 74 6 1 4648 4720 125401730 125401803 4.410000e-16 97.1
53 TraesCS5A01G108400 chr6D 90.541 74 6 1 4648 4720 34808374 34808447 4.410000e-16 97.1
54 TraesCS5A01G108400 chr4D 90.541 74 6 1 4648 4720 252162673 252162746 4.410000e-16 97.1
55 TraesCS5A01G108400 chr3A 88.312 77 9 0 704 780 20743698 20743774 5.710000e-15 93.5
56 TraesCS5A01G108400 chr3A 97.222 36 1 0 673 708 97155448 97155413 1.610000e-05 62.1
57 TraesCS5A01G108400 chrUn 84.706 85 12 1 704 787 86970769 86970853 3.430000e-12 84.2
58 TraesCS5A01G108400 chrUn 97.222 36 1 0 673 708 65675721 65675756 1.610000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G108400 chr5A 193917529 193922880 5351 False 9884.000000 9884 100.000000 1 5352 1 chr5A.!!$F1 5351
1 TraesCS5A01G108400 chr5A 193919701 193920495 794 True 424.000000 424 95.489000 2173 2967 2 chr5A.!!$R5 794
2 TraesCS5A01G108400 chr5D 138896335 138900518 4183 True 1412.750000 2519 95.184000 914 5352 4 chr5D.!!$R2 4438
3 TraesCS5A01G108400 chr5D 138898583 138899097 514 False 758.000000 758 93.786000 2471 2967 1 chr5D.!!$F1 496
4 TraesCS5A01G108400 chr5B 188793122 188794096 974 True 1485.000000 1485 94.213000 3634 4608 1 chr5B.!!$R1 974
5 TraesCS5A01G108400 chr5B 188800501 188802510 2009 True 1027.333333 2145 92.888667 779 3639 3 chr5B.!!$R3 2860
6 TraesCS5A01G108400 chr5B 282145318 282145838 520 False 520.000000 520 85.496000 2471 2967 1 chr5B.!!$F1 496
7 TraesCS5A01G108400 chr6B 46771460 46772005 545 False 765.000000 765 91.985000 4802 5348 1 chr6B.!!$F1 546
8 TraesCS5A01G108400 chr2B 531048934 531049475 541 False 763.000000 763 91.985000 4801 5348 1 chr2B.!!$F1 547
9 TraesCS5A01G108400 chr7B 80075139 80075670 531 True 706.000000 706 90.672000 4801 5332 1 chr7B.!!$R1 531
10 TraesCS5A01G108400 chr4A 225979538 225980987 1449 True 440.000000 649 90.139500 206 673 2 chr4A.!!$R2 467
11 TraesCS5A01G108400 chr2A 749057627 749058140 513 False 580.000000 580 87.786000 2471 2968 1 chr2A.!!$F1 497
12 TraesCS5A01G108400 chr1A 532456994 532457556 562 False 575.000000 575 85.714000 4803 5348 1 chr1A.!!$F2 545
13 TraesCS5A01G108400 chr3B 609324960 609325486 526 True 564.000000 564 86.389000 4802 5317 1 chr3B.!!$R1 515
14 TraesCS5A01G108400 chr2D 7405933 7406502 569 True 477.000000 477 82.705000 4801 5352 1 chr2D.!!$R1 551
15 TraesCS5A01G108400 chr4B 584504868 584505408 540 False 433.000000 433 81.495000 4797 5348 1 chr4B.!!$F3 551
16 TraesCS5A01G108400 chr3D 604231179 604231729 550 False 343.500000 350 90.649000 4804 5347 2 chr3D.!!$F3 543
17 TraesCS5A01G108400 chr6A 422341039 422341557 518 False 279.000000 279 77.351000 2474 2964 1 chr6A.!!$F1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 902 0.033601 TCAGCCATTTTGCCCCGTAT 60.034 50.0 0.00 0.0 0.00 3.06 F
727 903 0.102844 CAGCCATTTTGCCCCGTATG 59.897 55.0 0.00 0.0 0.00 2.39 F
2395 2754 0.035458 GAGCCTGTTGGTGCAGTAGT 59.965 55.0 0.00 0.0 34.84 2.73 F
2398 2757 0.108585 CCTGTTGGTGCAGTAGTGGT 59.891 55.0 0.00 0.0 34.84 4.16 F
3531 4048 0.465097 ATGATTGGAGCTTGGCGAGG 60.465 55.0 3.44 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 2740 0.179032 CCACCACTACTGCACCAACA 60.179 55.000 0.00 0.00 0.00 3.33 R
2603 2987 1.271856 TTGGCGATGAGGGACAAGTA 58.728 50.000 0.00 0.00 0.00 2.24 R
3561 4078 2.821969 CTCCATGGGGTCAACTTCAAAG 59.178 50.000 13.02 0.00 34.93 2.77 R
4248 4767 4.424061 TTGTTCTAATCATGTGCAGTGC 57.576 40.909 8.58 8.58 0.00 4.40 R
5113 5862 0.106708 CTCGGCTAATAGGCTTGGCA 59.893 55.000 12.07 0.00 38.85 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.568181 CACTTGTTATGACAGCGCG 57.432 52.632 0.00 0.00 37.04 6.86
19 20 1.067693 CACTTGTTATGACAGCGCGA 58.932 50.000 12.10 0.00 37.04 5.87
20 21 1.059692 CACTTGTTATGACAGCGCGAG 59.940 52.381 12.10 3.23 37.04 5.03
21 22 1.067846 ACTTGTTATGACAGCGCGAGA 60.068 47.619 12.10 0.00 37.04 4.04
22 23 1.321743 CTTGTTATGACAGCGCGAGAC 59.678 52.381 12.10 1.84 37.04 3.36
23 24 0.242555 TGTTATGACAGCGCGAGACA 59.757 50.000 12.10 8.60 0.00 3.41
24 25 1.135112 TGTTATGACAGCGCGAGACAT 60.135 47.619 12.10 19.68 0.00 3.06
25 26 1.927174 GTTATGACAGCGCGAGACATT 59.073 47.619 20.56 9.44 0.00 2.71
26 27 1.559831 TATGACAGCGCGAGACATTG 58.440 50.000 20.56 7.46 0.00 2.82
27 28 0.390340 ATGACAGCGCGAGACATTGT 60.390 50.000 12.10 5.58 0.00 2.71
28 29 1.284297 TGACAGCGCGAGACATTGTG 61.284 55.000 12.10 0.00 0.00 3.33
29 30 1.006220 ACAGCGCGAGACATTGTGA 60.006 52.632 12.10 0.00 0.00 3.58
30 31 0.599991 ACAGCGCGAGACATTGTGAA 60.600 50.000 12.10 0.00 0.00 3.18
31 32 0.094216 CAGCGCGAGACATTGTGAAG 59.906 55.000 12.10 0.00 0.00 3.02
32 33 0.038251 AGCGCGAGACATTGTGAAGA 60.038 50.000 12.10 0.00 0.00 2.87
33 34 0.368227 GCGCGAGACATTGTGAAGAG 59.632 55.000 12.10 0.00 0.00 2.85
34 35 1.982612 CGCGAGACATTGTGAAGAGA 58.017 50.000 0.00 0.00 0.00 3.10
35 36 2.328473 CGCGAGACATTGTGAAGAGAA 58.672 47.619 0.00 0.00 0.00 2.87
36 37 2.731451 CGCGAGACATTGTGAAGAGAAA 59.269 45.455 0.00 0.00 0.00 2.52
37 38 3.422343 CGCGAGACATTGTGAAGAGAAAC 60.422 47.826 0.00 0.00 0.00 2.78
38 39 3.494626 GCGAGACATTGTGAAGAGAAACA 59.505 43.478 0.00 0.00 0.00 2.83
39 40 4.024893 GCGAGACATTGTGAAGAGAAACAA 60.025 41.667 0.00 0.00 40.36 2.83
40 41 5.334414 GCGAGACATTGTGAAGAGAAACAAT 60.334 40.000 0.00 0.00 45.54 2.71
41 42 6.662616 CGAGACATTGTGAAGAGAAACAATT 58.337 36.000 0.00 0.00 42.85 2.32
42 43 7.571244 GCGAGACATTGTGAAGAGAAACAATTA 60.571 37.037 0.00 0.00 42.85 1.40
43 44 8.282592 CGAGACATTGTGAAGAGAAACAATTAA 58.717 33.333 0.00 0.00 42.85 1.40
44 45 9.387123 GAGACATTGTGAAGAGAAACAATTAAC 57.613 33.333 0.00 0.00 42.85 2.01
45 46 9.125026 AGACATTGTGAAGAGAAACAATTAACT 57.875 29.630 0.00 0.00 42.85 2.24
46 47 9.387123 GACATTGTGAAGAGAAACAATTAACTC 57.613 33.333 0.00 0.00 42.85 3.01
47 48 9.125026 ACATTGTGAAGAGAAACAATTAACTCT 57.875 29.630 0.00 0.00 42.85 3.24
65 66 9.620259 ATTAACTCTTAAAAGATGGTCATCTCC 57.380 33.333 13.16 0.00 46.75 3.71
66 67 6.627087 ACTCTTAAAAGATGGTCATCTCCA 57.373 37.500 13.16 0.69 46.75 3.86
67 68 6.648192 ACTCTTAAAAGATGGTCATCTCCAG 58.352 40.000 13.16 7.72 46.75 3.86
68 69 6.441924 ACTCTTAAAAGATGGTCATCTCCAGA 59.558 38.462 13.16 10.74 46.75 3.86
69 70 7.038017 ACTCTTAAAAGATGGTCATCTCCAGAA 60.038 37.037 13.16 5.91 46.75 3.02
70 71 7.334090 TCTTAAAAGATGGTCATCTCCAGAAG 58.666 38.462 13.16 13.14 46.75 2.85
71 72 3.557228 AAGATGGTCATCTCCAGAAGC 57.443 47.619 13.16 0.00 46.75 3.86
72 73 2.475155 AGATGGTCATCTCCAGAAGCA 58.525 47.619 7.59 0.00 44.37 3.91
73 74 2.435069 AGATGGTCATCTCCAGAAGCAG 59.565 50.000 7.59 0.00 44.37 4.24
74 75 0.251354 TGGTCATCTCCAGAAGCAGC 59.749 55.000 0.00 0.00 33.19 5.25
75 76 0.251354 GGTCATCTCCAGAAGCAGCA 59.749 55.000 0.00 0.00 0.00 4.41
76 77 1.367659 GTCATCTCCAGAAGCAGCAC 58.632 55.000 0.00 0.00 0.00 4.40
77 78 0.251354 TCATCTCCAGAAGCAGCACC 59.749 55.000 0.00 0.00 0.00 5.01
78 79 0.252479 CATCTCCAGAAGCAGCACCT 59.748 55.000 0.00 0.00 0.00 4.00
79 80 0.252479 ATCTCCAGAAGCAGCACCTG 59.748 55.000 0.00 0.78 34.12 4.00
80 81 1.376942 CTCCAGAAGCAGCACCTGG 60.377 63.158 21.13 21.13 46.64 4.45
81 82 2.121992 CTCCAGAAGCAGCACCTGGT 62.122 60.000 24.21 0.00 45.71 4.00
82 83 1.673665 CCAGAAGCAGCACCTGGTC 60.674 63.158 19.63 0.00 41.59 4.02
83 84 1.374190 CAGAAGCAGCACCTGGTCT 59.626 57.895 0.00 0.00 41.59 3.85
84 85 0.610174 CAGAAGCAGCACCTGGTCTA 59.390 55.000 0.00 0.00 41.59 2.59
85 86 1.002430 CAGAAGCAGCACCTGGTCTAA 59.998 52.381 0.00 0.00 41.59 2.10
86 87 1.699634 AGAAGCAGCACCTGGTCTAAA 59.300 47.619 0.00 0.00 41.59 1.85
87 88 2.307098 AGAAGCAGCACCTGGTCTAAAT 59.693 45.455 0.00 0.00 41.59 1.40
88 89 3.519510 AGAAGCAGCACCTGGTCTAAATA 59.480 43.478 0.00 0.00 41.59 1.40
89 90 4.164988 AGAAGCAGCACCTGGTCTAAATAT 59.835 41.667 0.00 0.00 41.59 1.28
90 91 3.813443 AGCAGCACCTGGTCTAAATATG 58.187 45.455 0.00 0.00 37.71 1.78
91 92 3.455910 AGCAGCACCTGGTCTAAATATGA 59.544 43.478 0.00 0.00 37.71 2.15
92 93 4.080356 AGCAGCACCTGGTCTAAATATGAA 60.080 41.667 0.00 0.00 37.71 2.57
93 94 4.640201 GCAGCACCTGGTCTAAATATGAAA 59.360 41.667 0.00 0.00 31.21 2.69
94 95 5.125417 GCAGCACCTGGTCTAAATATGAAAA 59.875 40.000 0.00 0.00 31.21 2.29
95 96 6.350110 GCAGCACCTGGTCTAAATATGAAAAA 60.350 38.462 0.00 0.00 31.21 1.94
96 97 7.253422 CAGCACCTGGTCTAAATATGAAAAAG 58.747 38.462 0.00 0.00 0.00 2.27
97 98 7.121168 CAGCACCTGGTCTAAATATGAAAAAGA 59.879 37.037 0.00 0.00 0.00 2.52
98 99 7.836183 AGCACCTGGTCTAAATATGAAAAAGAT 59.164 33.333 0.00 0.00 0.00 2.40
99 100 7.917505 GCACCTGGTCTAAATATGAAAAAGATG 59.082 37.037 0.00 0.00 0.00 2.90
100 101 8.960591 CACCTGGTCTAAATATGAAAAAGATGT 58.039 33.333 0.00 0.00 0.00 3.06
101 102 8.960591 ACCTGGTCTAAATATGAAAAAGATGTG 58.039 33.333 0.00 0.00 0.00 3.21
102 103 9.177608 CCTGGTCTAAATATGAAAAAGATGTGA 57.822 33.333 0.00 0.00 0.00 3.58
103 104 9.994432 CTGGTCTAAATATGAAAAAGATGTGAC 57.006 33.333 0.00 0.00 0.00 3.67
104 105 8.956426 TGGTCTAAATATGAAAAAGATGTGACC 58.044 33.333 0.00 0.00 38.42 4.02
105 106 8.122952 GGTCTAAATATGAAAAAGATGTGACCG 58.877 37.037 0.00 0.00 0.00 4.79
106 107 8.879759 GTCTAAATATGAAAAAGATGTGACCGA 58.120 33.333 0.00 0.00 0.00 4.69
107 108 8.879759 TCTAAATATGAAAAAGATGTGACCGAC 58.120 33.333 0.00 0.00 0.00 4.79
108 109 6.436843 AATATGAAAAAGATGTGACCGACC 57.563 37.500 0.00 0.00 0.00 4.79
109 110 2.139917 TGAAAAAGATGTGACCGACCG 58.860 47.619 0.00 0.00 0.00 4.79
110 111 2.224090 TGAAAAAGATGTGACCGACCGA 60.224 45.455 0.00 0.00 0.00 4.69
111 112 2.080286 AAAAGATGTGACCGACCGAG 57.920 50.000 0.00 0.00 0.00 4.63
112 113 1.254026 AAAGATGTGACCGACCGAGA 58.746 50.000 0.00 0.00 0.00 4.04
113 114 1.475403 AAGATGTGACCGACCGAGAT 58.525 50.000 0.00 0.00 0.00 2.75
114 115 1.475403 AGATGTGACCGACCGAGATT 58.525 50.000 0.00 0.00 0.00 2.40
115 116 2.651455 AGATGTGACCGACCGAGATTA 58.349 47.619 0.00 0.00 0.00 1.75
116 117 3.021695 AGATGTGACCGACCGAGATTAA 58.978 45.455 0.00 0.00 0.00 1.40
117 118 3.446161 AGATGTGACCGACCGAGATTAAA 59.554 43.478 0.00 0.00 0.00 1.52
118 119 3.663995 TGTGACCGACCGAGATTAAAA 57.336 42.857 0.00 0.00 0.00 1.52
119 120 3.992643 TGTGACCGACCGAGATTAAAAA 58.007 40.909 0.00 0.00 0.00 1.94
120 121 3.742369 TGTGACCGACCGAGATTAAAAAC 59.258 43.478 0.00 0.00 0.00 2.43
121 122 3.742369 GTGACCGACCGAGATTAAAAACA 59.258 43.478 0.00 0.00 0.00 2.83
122 123 3.742369 TGACCGACCGAGATTAAAAACAC 59.258 43.478 0.00 0.00 0.00 3.32
123 124 3.731089 ACCGACCGAGATTAAAAACACA 58.269 40.909 0.00 0.00 0.00 3.72
124 125 4.320870 ACCGACCGAGATTAAAAACACAT 58.679 39.130 0.00 0.00 0.00 3.21
125 126 5.481105 ACCGACCGAGATTAAAAACACATA 58.519 37.500 0.00 0.00 0.00 2.29
126 127 5.933463 ACCGACCGAGATTAAAAACACATAA 59.067 36.000 0.00 0.00 0.00 1.90
127 128 6.128472 ACCGACCGAGATTAAAAACACATAAC 60.128 38.462 0.00 0.00 0.00 1.89
128 129 6.128499 CCGACCGAGATTAAAAACACATAACA 60.128 38.462 0.00 0.00 0.00 2.41
129 130 7.292292 CGACCGAGATTAAAAACACATAACAA 58.708 34.615 0.00 0.00 0.00 2.83
130 131 7.267600 CGACCGAGATTAAAAACACATAACAAC 59.732 37.037 0.00 0.00 0.00 3.32
131 132 8.161699 ACCGAGATTAAAAACACATAACAACT 57.838 30.769 0.00 0.00 0.00 3.16
132 133 8.626526 ACCGAGATTAAAAACACATAACAACTT 58.373 29.630 0.00 0.00 0.00 2.66
133 134 9.458374 CCGAGATTAAAAACACATAACAACTTT 57.542 29.630 0.00 0.00 0.00 2.66
147 148 9.180678 ACATAACAACTTTCAAAAATCTTAGCG 57.819 29.630 0.00 0.00 0.00 4.26
148 149 8.638565 CATAACAACTTTCAAAAATCTTAGCGG 58.361 33.333 0.00 0.00 0.00 5.52
149 150 4.982295 ACAACTTTCAAAAATCTTAGCGGC 59.018 37.500 0.00 0.00 0.00 6.53
150 151 4.846779 ACTTTCAAAAATCTTAGCGGCA 57.153 36.364 1.45 0.00 0.00 5.69
151 152 5.391312 ACTTTCAAAAATCTTAGCGGCAT 57.609 34.783 1.45 0.00 0.00 4.40
152 153 5.163513 ACTTTCAAAAATCTTAGCGGCATG 58.836 37.500 1.45 0.00 0.00 4.06
153 154 5.048083 ACTTTCAAAAATCTTAGCGGCATGA 60.048 36.000 1.45 0.00 0.00 3.07
154 155 4.621068 TCAAAAATCTTAGCGGCATGAG 57.379 40.909 1.45 0.00 0.00 2.90
155 156 3.111098 CAAAAATCTTAGCGGCATGAGC 58.889 45.455 1.45 0.25 41.10 4.26
156 157 0.940126 AAATCTTAGCGGCATGAGCG 59.060 50.000 1.45 0.00 43.41 5.03
157 158 1.502163 AATCTTAGCGGCATGAGCGC 61.502 55.000 0.00 0.00 43.41 5.92
164 165 3.279116 GGCATGAGCGCCGCATTA 61.279 61.111 13.36 0.00 43.52 1.90
165 166 2.250485 GCATGAGCGCCGCATTAG 59.750 61.111 13.36 0.00 0.00 1.73
166 167 2.537560 GCATGAGCGCCGCATTAGT 61.538 57.895 13.36 0.00 0.00 2.24
167 168 1.566563 CATGAGCGCCGCATTAGTC 59.433 57.895 13.36 0.00 0.00 2.59
168 169 1.951130 ATGAGCGCCGCATTAGTCG 60.951 57.895 13.36 0.00 0.00 4.18
170 171 4.891727 AGCGCCGCATTAGTCGGG 62.892 66.667 13.36 0.00 46.51 5.14
172 173 4.891727 CGCCGCATTAGTCGGGCT 62.892 66.667 3.54 0.00 46.51 5.19
173 174 2.967615 GCCGCATTAGTCGGGCTC 60.968 66.667 3.54 0.00 46.51 4.70
174 175 2.815308 CCGCATTAGTCGGGCTCT 59.185 61.111 0.00 0.00 42.99 4.09
175 176 1.300233 CCGCATTAGTCGGGCTCTC 60.300 63.158 0.00 0.00 42.99 3.20
176 177 1.736586 CGCATTAGTCGGGCTCTCT 59.263 57.895 0.00 0.00 0.00 3.10
177 178 0.103208 CGCATTAGTCGGGCTCTCTT 59.897 55.000 0.00 0.00 0.00 2.85
178 179 1.471676 CGCATTAGTCGGGCTCTCTTT 60.472 52.381 0.00 0.00 0.00 2.52
179 180 2.205911 GCATTAGTCGGGCTCTCTTTC 58.794 52.381 0.00 0.00 0.00 2.62
180 181 2.827652 CATTAGTCGGGCTCTCTTTCC 58.172 52.381 0.00 0.00 0.00 3.13
181 182 1.933021 TTAGTCGGGCTCTCTTTCCA 58.067 50.000 0.00 0.00 0.00 3.53
182 183 2.160721 TAGTCGGGCTCTCTTTCCAT 57.839 50.000 0.00 0.00 0.00 3.41
183 184 1.280457 AGTCGGGCTCTCTTTCCATT 58.720 50.000 0.00 0.00 0.00 3.16
184 185 2.467880 AGTCGGGCTCTCTTTCCATTA 58.532 47.619 0.00 0.00 0.00 1.90
185 186 3.041946 AGTCGGGCTCTCTTTCCATTAT 58.958 45.455 0.00 0.00 0.00 1.28
186 187 4.223953 AGTCGGGCTCTCTTTCCATTATA 58.776 43.478 0.00 0.00 0.00 0.98
187 188 4.654262 AGTCGGGCTCTCTTTCCATTATAA 59.346 41.667 0.00 0.00 0.00 0.98
188 189 5.308237 AGTCGGGCTCTCTTTCCATTATAAT 59.692 40.000 0.00 0.00 0.00 1.28
189 190 5.998363 GTCGGGCTCTCTTTCCATTATAATT 59.002 40.000 0.00 0.00 0.00 1.40
190 191 6.486993 GTCGGGCTCTCTTTCCATTATAATTT 59.513 38.462 0.00 0.00 0.00 1.82
191 192 6.710744 TCGGGCTCTCTTTCCATTATAATTTC 59.289 38.462 0.00 0.00 0.00 2.17
192 193 6.712547 CGGGCTCTCTTTCCATTATAATTTCT 59.287 38.462 0.00 0.00 0.00 2.52
193 194 7.229506 CGGGCTCTCTTTCCATTATAATTTCTT 59.770 37.037 0.00 0.00 0.00 2.52
194 195 8.572185 GGGCTCTCTTTCCATTATAATTTCTTC 58.428 37.037 0.00 0.00 0.00 2.87
195 196 9.125026 GGCTCTCTTTCCATTATAATTTCTTCA 57.875 33.333 0.00 0.00 0.00 3.02
246 247 3.454719 TTCCACCACCACATGAATCAT 57.545 42.857 0.00 0.00 0.00 2.45
250 251 3.083293 CACCACCACATGAATCATCACA 58.917 45.455 0.00 0.00 38.69 3.58
306 307 8.099364 TCTTATTGATTCTTGAGTTGGTTCAC 57.901 34.615 0.00 0.00 0.00 3.18
307 308 7.939039 TCTTATTGATTCTTGAGTTGGTTCACT 59.061 33.333 0.00 0.00 0.00 3.41
313 314 4.843728 TCTTGAGTTGGTTCACTGAGTTT 58.156 39.130 0.00 0.00 0.00 2.66
354 355 9.685828 TTTAAATTAGTCGAATTTTGTGGAAGG 57.314 29.630 8.67 0.00 43.83 3.46
382 383 5.163581 CGAGGTGGGACTAAATATATACGGG 60.164 48.000 0.00 0.00 0.00 5.28
383 384 4.468868 AGGTGGGACTAAATATATACGGGC 59.531 45.833 0.00 0.00 0.00 6.13
384 385 4.223477 GGTGGGACTAAATATATACGGGCA 59.777 45.833 0.00 0.00 0.00 5.36
419 420 7.718272 TTTATAGGAACGTATTGGTGTATGC 57.282 36.000 0.00 0.00 0.00 3.14
428 429 4.440103 CGTATTGGTGTATGCTAGTTCGAC 59.560 45.833 0.00 0.00 0.00 4.20
442 443 6.321945 TGCTAGTTCGACACCCATATAAGTAA 59.678 38.462 0.00 0.00 0.00 2.24
444 445 7.381678 GCTAGTTCGACACCCATATAAGTAAAG 59.618 40.741 0.00 0.00 0.00 1.85
447 448 4.406326 TCGACACCCATATAAGTAAAGCCA 59.594 41.667 0.00 0.00 0.00 4.75
483 484 1.202915 TCAGAAACAATGAGCTGGCCA 60.203 47.619 4.71 4.71 0.00 5.36
515 516 2.866762 CACGCTAGATTTTAGAGGGCAC 59.133 50.000 0.00 0.00 0.00 5.01
518 519 3.743396 CGCTAGATTTTAGAGGGCACATC 59.257 47.826 0.00 0.00 0.00 3.06
527 528 3.124921 GGGCACATCGTGGGTTCG 61.125 66.667 0.00 0.00 33.64 3.95
531 532 0.802494 GCACATCGTGGGTTCGAATT 59.198 50.000 0.00 0.00 42.99 2.17
553 560 4.082274 TCAGCATATTTGTTTCAGCACG 57.918 40.909 0.00 0.00 0.00 5.34
557 564 2.987413 TATTTGTTTCAGCACGGCAG 57.013 45.000 0.00 0.00 0.00 4.85
559 566 1.098869 TTTGTTTCAGCACGGCAGAA 58.901 45.000 0.00 0.77 32.52 3.02
562 569 2.499197 TGTTTCAGCACGGCAGAATTA 58.501 42.857 4.96 0.00 34.31 1.40
566 573 5.182190 TGTTTCAGCACGGCAGAATTATTTA 59.818 36.000 4.96 0.00 34.31 1.40
592 599 6.151480 TCCGTAATACACTTACACATGACTGA 59.849 38.462 0.00 0.00 0.00 3.41
614 621 2.995258 GCGTTGAATACCGGAAACTACA 59.005 45.455 9.46 0.00 0.00 2.74
617 624 4.618927 CGTTGAATACCGGAAACTACAGGA 60.619 45.833 9.46 0.00 0.00 3.86
634 641 3.067461 ACAGGAGCGTTTATGCAAAAACA 59.933 39.130 0.00 0.00 38.93 2.83
635 642 3.670055 CAGGAGCGTTTATGCAAAAACAG 59.330 43.478 0.00 0.00 38.93 3.16
638 645 4.148174 GGAGCGTTTATGCAAAAACAGAAC 59.852 41.667 0.00 0.00 38.93 3.01
683 859 1.132643 GACGTACTGCGGAGTCAATCT 59.867 52.381 14.74 0.00 46.52 2.40
700 876 9.547753 GAGTCAATCTGTGCTTTATTATTAGGA 57.452 33.333 0.00 0.00 0.00 2.94
711 887 9.277783 TGCTTTATTATTAGGAAGAGATTCAGC 57.722 33.333 0.00 0.00 0.00 4.26
712 888 8.726068 GCTTTATTATTAGGAAGAGATTCAGCC 58.274 37.037 0.00 0.00 0.00 4.85
717 893 9.652114 ATTATTAGGAAGAGATTCAGCCATTTT 57.348 29.630 0.00 0.00 0.00 1.82
718 894 6.764308 TTAGGAAGAGATTCAGCCATTTTG 57.236 37.500 0.00 0.00 0.00 2.44
719 895 3.446516 AGGAAGAGATTCAGCCATTTTGC 59.553 43.478 0.00 0.00 0.00 3.68
720 896 3.429960 GGAAGAGATTCAGCCATTTTGCC 60.430 47.826 0.00 0.00 0.00 4.52
721 897 2.105766 AGAGATTCAGCCATTTTGCCC 58.894 47.619 0.00 0.00 0.00 5.36
722 898 1.137675 GAGATTCAGCCATTTTGCCCC 59.862 52.381 0.00 0.00 0.00 5.80
723 899 0.179103 GATTCAGCCATTTTGCCCCG 60.179 55.000 0.00 0.00 0.00 5.73
724 900 0.904394 ATTCAGCCATTTTGCCCCGT 60.904 50.000 0.00 0.00 0.00 5.28
725 901 0.251386 TTCAGCCATTTTGCCCCGTA 60.251 50.000 0.00 0.00 0.00 4.02
726 902 0.033601 TCAGCCATTTTGCCCCGTAT 60.034 50.000 0.00 0.00 0.00 3.06
727 903 0.102844 CAGCCATTTTGCCCCGTATG 59.897 55.000 0.00 0.00 0.00 2.39
728 904 0.324275 AGCCATTTTGCCCCGTATGT 60.324 50.000 0.00 0.00 0.00 2.29
729 905 1.064314 AGCCATTTTGCCCCGTATGTA 60.064 47.619 0.00 0.00 0.00 2.29
730 906 1.336755 GCCATTTTGCCCCGTATGTAG 59.663 52.381 0.00 0.00 0.00 2.74
731 907 2.650322 CCATTTTGCCCCGTATGTAGT 58.350 47.619 0.00 0.00 0.00 2.73
732 908 2.616842 CCATTTTGCCCCGTATGTAGTC 59.383 50.000 0.00 0.00 0.00 2.59
733 909 2.406596 TTTTGCCCCGTATGTAGTCC 57.593 50.000 0.00 0.00 0.00 3.85
734 910 1.277579 TTTGCCCCGTATGTAGTCCA 58.722 50.000 0.00 0.00 0.00 4.02
735 911 1.502690 TTGCCCCGTATGTAGTCCAT 58.497 50.000 0.00 0.00 37.58 3.41
736 912 2.385135 TGCCCCGTATGTAGTCCATA 57.615 50.000 0.00 0.00 34.86 2.74
737 913 2.897350 TGCCCCGTATGTAGTCCATAT 58.103 47.619 0.00 0.00 38.29 1.78
738 914 3.244582 TGCCCCGTATGTAGTCCATATT 58.755 45.455 0.00 0.00 38.29 1.28
739 915 3.649023 TGCCCCGTATGTAGTCCATATTT 59.351 43.478 0.00 0.00 38.29 1.40
740 916 4.000988 GCCCCGTATGTAGTCCATATTTG 58.999 47.826 0.00 0.00 38.29 2.32
741 917 4.262721 GCCCCGTATGTAGTCCATATTTGA 60.263 45.833 0.00 0.00 38.29 2.69
742 918 5.743714 GCCCCGTATGTAGTCCATATTTGAA 60.744 44.000 0.00 0.00 38.29 2.69
743 919 6.472887 CCCCGTATGTAGTCCATATTTGAAT 58.527 40.000 0.00 0.00 38.29 2.57
744 920 6.594159 CCCCGTATGTAGTCCATATTTGAATC 59.406 42.308 0.00 0.00 38.29 2.52
745 921 7.386851 CCCGTATGTAGTCCATATTTGAATCT 58.613 38.462 0.00 0.00 38.29 2.40
746 922 7.545965 CCCGTATGTAGTCCATATTTGAATCTC 59.454 40.741 0.00 0.00 38.29 2.75
747 923 8.307483 CCGTATGTAGTCCATATTTGAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
775 951 8.581253 AAAGACTTGTATTTAGAAATGGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
776 952 7.510675 AGACTTGTATTTAGAAATGGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
777 953 7.569240 AGACTTGTATTTAGAAATGGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
781 957 9.853177 CTTGTATTTAGAAATGGAGGGAGTATT 57.147 33.333 0.00 0.00 0.00 1.89
854 1030 7.263496 AGAACGTACTAGACAAACTTGAAAGT 58.737 34.615 0.00 0.00 42.04 2.66
863 1039 3.800506 ACAAACTTGAAAGTCGTCCGTAG 59.199 43.478 0.00 0.00 38.57 3.51
963 1141 6.729187 CCGATAAAGAATGGAAAGGCTAAAG 58.271 40.000 0.00 0.00 0.00 1.85
966 1144 8.458843 CGATAAAGAATGGAAAGGCTAAAGAAA 58.541 33.333 0.00 0.00 0.00 2.52
970 1148 7.603180 AGAATGGAAAGGCTAAAGAAACTTT 57.397 32.000 0.00 0.00 35.99 2.66
1131 1309 2.241281 TGTCCCTACCCGATTCTTCA 57.759 50.000 0.00 0.00 0.00 3.02
1410 1769 5.858381 TCTCGCAAGCTCTTAATATTGGAT 58.142 37.500 0.00 0.00 37.18 3.41
1411 1770 6.291377 TCTCGCAAGCTCTTAATATTGGATT 58.709 36.000 0.00 0.00 37.18 3.01
1561 1920 5.957842 TTTAATGTTCTAGTTGTGCCCAG 57.042 39.130 0.00 0.00 0.00 4.45
1686 2045 9.869757 ATAAACCAAATTAACAGCATAACCTTC 57.130 29.630 0.00 0.00 0.00 3.46
1749 2108 4.051922 GTCTCAAACTCTCAATCGTGTGT 58.948 43.478 0.00 0.00 0.00 3.72
1765 2124 2.028385 GTGTGTATTCGGGAACTCAGGT 60.028 50.000 0.00 0.00 0.00 4.00
1807 2166 7.070821 GGATAGTTCCTAATTCCAGTAGGACAA 59.929 40.741 0.00 0.00 45.48 3.18
2044 2403 6.992063 AAGTGGATCTCATTACAATGACAC 57.008 37.500 12.20 12.20 40.32 3.67
2070 2429 4.384208 GGAATGTACCTGGTAGATGCAAGT 60.384 45.833 20.35 4.85 0.00 3.16
2106 2465 9.244799 GTATGAAAACCTTTTCCTTGTACAAAG 57.755 33.333 10.03 3.57 44.48 2.77
2334 2693 1.920835 GCTGGGAGGAACCTGACCT 60.921 63.158 0.00 0.00 40.80 3.85
2352 2711 1.613836 CTGAAAAAGCAGCTGAGGGT 58.386 50.000 20.43 0.00 0.00 4.34
2381 2740 0.545646 GCTGAGGAATGAAGGAGCCT 59.454 55.000 0.00 0.00 0.00 4.58
2395 2754 0.035458 GAGCCTGTTGGTGCAGTAGT 59.965 55.000 0.00 0.00 34.84 2.73
2398 2757 0.108585 CCTGTTGGTGCAGTAGTGGT 59.891 55.000 0.00 0.00 34.84 4.16
2469 2828 3.179265 CGACGGCGGTGCAGTTAG 61.179 66.667 13.24 0.00 37.05 2.34
2603 2987 2.068821 ATGGACGCATCCCTCTGCT 61.069 57.895 0.00 0.00 45.59 4.24
2849 3354 9.577110 CAATGTATGCATAATTCAGTTGAGTTT 57.423 29.630 8.28 0.00 34.39 2.66
2916 3421 3.041946 AGTTGGGAGTTCAGAAGTGAGT 58.958 45.455 0.00 0.00 32.98 3.41
2917 3422 3.070302 AGTTGGGAGTTCAGAAGTGAGTC 59.930 47.826 0.00 0.00 32.98 3.36
2970 3475 1.726853 CCGAACAGGCTCTAAGTTGG 58.273 55.000 0.00 0.00 0.00 3.77
2971 3476 1.275291 CCGAACAGGCTCTAAGTTGGA 59.725 52.381 0.10 0.00 0.00 3.53
2972 3477 2.093447 CCGAACAGGCTCTAAGTTGGAT 60.093 50.000 0.00 0.00 0.00 3.41
2973 3478 3.132289 CCGAACAGGCTCTAAGTTGGATA 59.868 47.826 0.00 0.00 0.00 2.59
2974 3479 4.202264 CCGAACAGGCTCTAAGTTGGATAT 60.202 45.833 0.00 0.00 0.00 1.63
2987 3492 6.808321 AAGTTGGATATTAGCCTACACTCA 57.192 37.500 13.66 0.00 34.27 3.41
2992 3497 5.047021 TGGATATTAGCCTACACTCATCTGC 60.047 44.000 0.00 0.00 0.00 4.26
3005 3510 3.584848 ACTCATCTGCTTTCCTAACTGGT 59.415 43.478 0.00 0.00 37.07 4.00
3027 3532 5.240623 GGTTCATGGTGTGTTACATTCTCAA 59.759 40.000 0.00 0.00 0.00 3.02
3082 3587 3.698029 TGCTGAAGTTGCAAGAAGTTC 57.302 42.857 0.00 0.00 37.51 3.01
3097 3614 6.514870 GCAAGAAGTTCACATTTACCACATGA 60.515 38.462 5.50 0.00 0.00 3.07
3119 3636 1.679139 TGCTTCAACTCAAGTGTGGG 58.321 50.000 0.00 0.00 0.00 4.61
3120 3637 1.211703 TGCTTCAACTCAAGTGTGGGA 59.788 47.619 0.00 0.00 0.00 4.37
3122 3639 2.887152 GCTTCAACTCAAGTGTGGGATT 59.113 45.455 0.00 0.00 0.00 3.01
3123 3640 4.072131 GCTTCAACTCAAGTGTGGGATTA 58.928 43.478 0.00 0.00 0.00 1.75
3124 3641 4.518970 GCTTCAACTCAAGTGTGGGATTAA 59.481 41.667 0.00 0.00 0.00 1.40
3125 3642 5.183904 GCTTCAACTCAAGTGTGGGATTAAT 59.816 40.000 0.00 0.00 0.00 1.40
3126 3643 6.374333 GCTTCAACTCAAGTGTGGGATTAATA 59.626 38.462 0.00 0.00 0.00 0.98
3127 3644 7.067494 GCTTCAACTCAAGTGTGGGATTAATAT 59.933 37.037 0.00 0.00 0.00 1.28
3128 3645 9.613428 CTTCAACTCAAGTGTGGGATTAATATA 57.387 33.333 0.00 0.00 0.00 0.86
3531 4048 0.465097 ATGATTGGAGCTTGGCGAGG 60.465 55.000 3.44 0.00 0.00 4.63
3561 4078 0.947244 CTGAGCGATATGTTTGGCCC 59.053 55.000 0.00 0.00 0.00 5.80
3900 4417 5.353394 ACCTTATTAGAATCCTTGCACGA 57.647 39.130 0.00 0.00 0.00 4.35
4106 4625 7.392418 TGATTCTCAACAGATCATGAAGTTCT 58.608 34.615 0.00 0.00 0.00 3.01
4107 4626 7.548427 TGATTCTCAACAGATCATGAAGTTCTC 59.452 37.037 0.00 0.00 0.00 2.87
4125 4644 6.860080 AGTTCTCCGTAAACGAAGATGAATA 58.140 36.000 3.65 0.00 43.02 1.75
4248 4767 9.723447 CTATACTGAGTTGTTGACTATGTACTG 57.277 37.037 0.00 0.00 39.19 2.74
4368 4891 8.659925 TGTTTGCACAAAATGTCAAAATATCT 57.340 26.923 0.00 0.00 33.06 1.98
4510 5038 8.865090 AGTTCTAATATCCTCCATACTCACTTG 58.135 37.037 0.00 0.00 0.00 3.16
4628 5170 6.860023 CAGACAACAAGCAAAAGGAAATAGAG 59.140 38.462 0.00 0.00 0.00 2.43
4631 5173 7.781056 ACAACAAGCAAAAGGAAATAGAGAAA 58.219 30.769 0.00 0.00 0.00 2.52
4640 5182 9.912634 CAAAAGGAAATAGAGAAATAAGCACAA 57.087 29.630 0.00 0.00 0.00 3.33
4641 5183 9.914131 AAAAGGAAATAGAGAAATAAGCACAAC 57.086 29.630 0.00 0.00 0.00 3.32
4642 5184 8.870075 AAGGAAATAGAGAAATAAGCACAACT 57.130 30.769 0.00 0.00 0.00 3.16
4643 5185 8.870075 AGGAAATAGAGAAATAAGCACAACTT 57.130 30.769 0.00 0.00 42.76 2.66
4644 5186 8.734386 AGGAAATAGAGAAATAAGCACAACTTG 58.266 33.333 0.00 0.00 39.58 3.16
4645 5187 8.515414 GGAAATAGAGAAATAAGCACAACTTGT 58.485 33.333 0.00 0.00 39.58 3.16
4692 5234 9.171877 GGCTAAAAGATATGAGATATCCAAAGG 57.828 37.037 0.00 0.00 42.03 3.11
4701 5243 6.455360 TGAGATATCCAAAGGAATGTTTGC 57.545 37.500 0.00 0.00 36.29 3.68
4714 5256 6.103997 AGGAATGTTTGCTTGCAAATATGAG 58.896 36.000 23.73 0.00 0.00 2.90
4715 5257 5.870978 GGAATGTTTGCTTGCAAATATGAGT 59.129 36.000 23.73 13.07 0.00 3.41
4716 5258 6.183360 GGAATGTTTGCTTGCAAATATGAGTG 60.183 38.462 23.73 0.00 0.00 3.51
4717 5259 5.450592 TGTTTGCTTGCAAATATGAGTGA 57.549 34.783 21.25 0.00 0.00 3.41
4718 5260 5.840715 TGTTTGCTTGCAAATATGAGTGAA 58.159 33.333 21.25 0.00 0.00 3.18
4719 5261 5.921976 TGTTTGCTTGCAAATATGAGTGAAG 59.078 36.000 21.25 0.00 0.00 3.02
4720 5262 4.100707 TGCTTGCAAATATGAGTGAAGC 57.899 40.909 0.00 0.00 35.88 3.86
4721 5263 3.760151 TGCTTGCAAATATGAGTGAAGCT 59.240 39.130 0.00 0.00 36.22 3.74
4722 5264 4.142534 TGCTTGCAAATATGAGTGAAGCTC 60.143 41.667 0.00 0.00 44.36 4.09
4751 5307 4.666907 AGATGGGATCCATAAGAACACCAT 59.333 41.667 15.23 3.22 45.26 3.55
4752 5308 5.851693 AGATGGGATCCATAAGAACACCATA 59.148 40.000 15.23 0.00 45.26 2.74
4753 5309 5.985175 TGGGATCCATAAGAACACCATAA 57.015 39.130 15.23 0.00 0.00 1.90
4754 5310 5.940617 TGGGATCCATAAGAACACCATAAG 58.059 41.667 15.23 0.00 0.00 1.73
4755 5311 5.669904 TGGGATCCATAAGAACACCATAAGA 59.330 40.000 15.23 0.00 0.00 2.10
4756 5312 6.159575 TGGGATCCATAAGAACACCATAAGAA 59.840 38.462 15.23 0.00 0.00 2.52
4757 5313 6.486993 GGGATCCATAAGAACACCATAAGAAC 59.513 42.308 15.23 0.00 0.00 3.01
4758 5314 7.054124 GGATCCATAAGAACACCATAAGAACA 58.946 38.462 6.95 0.00 0.00 3.18
4759 5315 7.012421 GGATCCATAAGAACACCATAAGAACAC 59.988 40.741 6.95 0.00 0.00 3.32
4760 5316 6.177610 TCCATAAGAACACCATAAGAACACC 58.822 40.000 0.00 0.00 0.00 4.16
4761 5317 5.943416 CCATAAGAACACCATAAGAACACCA 59.057 40.000 0.00 0.00 0.00 4.17
4762 5318 6.094048 CCATAAGAACACCATAAGAACACCAG 59.906 42.308 0.00 0.00 0.00 4.00
4764 5320 4.642429 AGAACACCATAAGAACACCAGTC 58.358 43.478 0.00 0.00 0.00 3.51
4765 5321 4.102524 AGAACACCATAAGAACACCAGTCA 59.897 41.667 0.00 0.00 0.00 3.41
4766 5322 4.640771 ACACCATAAGAACACCAGTCAT 57.359 40.909 0.00 0.00 0.00 3.06
4767 5323 4.326826 ACACCATAAGAACACCAGTCATG 58.673 43.478 0.00 0.00 0.00 3.07
4768 5324 4.202461 ACACCATAAGAACACCAGTCATGT 60.202 41.667 0.00 0.00 0.00 3.21
4769 5325 4.154737 CACCATAAGAACACCAGTCATGTG 59.845 45.833 0.00 0.00 39.63 3.21
4770 5326 4.041567 ACCATAAGAACACCAGTCATGTGA 59.958 41.667 0.00 0.00 37.18 3.58
4771 5327 5.188434 CCATAAGAACACCAGTCATGTGAT 58.812 41.667 0.00 0.00 37.18 3.06
4772 5328 5.295292 CCATAAGAACACCAGTCATGTGATC 59.705 44.000 0.00 0.00 37.18 2.92
4773 5329 4.356405 AAGAACACCAGTCATGTGATCA 57.644 40.909 0.00 0.00 37.81 2.92
4774 5330 4.356405 AGAACACCAGTCATGTGATCAA 57.644 40.909 0.00 0.00 37.81 2.57
4775 5331 4.914983 AGAACACCAGTCATGTGATCAAT 58.085 39.130 0.00 0.00 37.81 2.57
4776 5332 6.053632 AGAACACCAGTCATGTGATCAATA 57.946 37.500 0.00 0.00 37.81 1.90
4777 5333 6.111382 AGAACACCAGTCATGTGATCAATAG 58.889 40.000 0.00 0.00 37.81 1.73
4778 5334 4.194640 ACACCAGTCATGTGATCAATAGC 58.805 43.478 0.00 0.00 37.18 2.97
4779 5335 4.080695 ACACCAGTCATGTGATCAATAGCT 60.081 41.667 0.00 0.00 37.18 3.32
4780 5336 4.510711 CACCAGTCATGTGATCAATAGCTC 59.489 45.833 0.00 0.00 35.74 4.09
4781 5337 4.162888 ACCAGTCATGTGATCAATAGCTCA 59.837 41.667 0.00 0.00 0.00 4.26
4782 5338 5.163227 ACCAGTCATGTGATCAATAGCTCAT 60.163 40.000 0.00 0.00 0.00 2.90
4783 5339 5.179555 CCAGTCATGTGATCAATAGCTCATG 59.820 44.000 13.03 13.03 41.85 3.07
4784 5340 5.989777 CAGTCATGTGATCAATAGCTCATGA 59.010 40.000 16.33 16.33 44.98 3.07
4785 5341 6.146347 CAGTCATGTGATCAATAGCTCATGAG 59.854 42.308 18.84 18.84 46.64 2.90
4786 5342 6.041751 AGTCATGTGATCAATAGCTCATGAGA 59.958 38.462 27.04 6.75 46.64 3.27
4787 5343 6.366604 GTCATGTGATCAATAGCTCATGAGAG 59.633 42.308 27.04 9.65 46.64 3.20
4788 5344 6.267014 TCATGTGATCAATAGCTCATGAGAGA 59.733 38.462 27.04 12.93 43.35 3.10
4789 5345 6.667558 TGTGATCAATAGCTCATGAGAGAT 57.332 37.500 27.04 17.96 44.98 2.75
4790 5346 7.771927 TGTGATCAATAGCTCATGAGAGATA 57.228 36.000 27.04 14.85 45.85 1.98
4799 5355 6.349243 AGCTCATGAGAGATATCCAGAAAG 57.651 41.667 27.04 0.00 44.98 2.62
5116 5865 7.918562 TCAGAATTACAAAACTAAAAGTGTGCC 59.081 33.333 0.00 0.00 0.00 5.01
5122 5871 2.364972 ACTAAAAGTGTGCCAAGCCT 57.635 45.000 0.00 0.00 0.00 4.58
5272 6069 1.338107 TGCCCTATCGATCATCGGTT 58.662 50.000 7.33 0.00 40.88 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.321743 GTCTCGCGCTGTCATAACAAG 59.678 52.381 5.56 0.00 34.24 3.16
3 4 1.336424 TGTCTCGCGCTGTCATAACAA 60.336 47.619 5.56 0.00 34.24 2.83
4 5 0.242555 TGTCTCGCGCTGTCATAACA 59.757 50.000 5.56 0.00 0.00 2.41
5 6 1.560923 ATGTCTCGCGCTGTCATAAC 58.439 50.000 5.56 0.00 0.00 1.89
6 7 1.926510 CAATGTCTCGCGCTGTCATAA 59.073 47.619 5.56 0.00 0.00 1.90
7 8 1.135112 ACAATGTCTCGCGCTGTCATA 60.135 47.619 5.56 0.00 0.00 2.15
8 9 0.390340 ACAATGTCTCGCGCTGTCAT 60.390 50.000 5.56 5.04 0.00 3.06
9 10 1.006220 ACAATGTCTCGCGCTGTCA 60.006 52.632 5.56 2.61 0.00 3.58
10 11 1.008875 TCACAATGTCTCGCGCTGTC 61.009 55.000 5.56 0.00 0.00 3.51
11 12 0.599991 TTCACAATGTCTCGCGCTGT 60.600 50.000 5.56 0.00 0.00 4.40
12 13 0.094216 CTTCACAATGTCTCGCGCTG 59.906 55.000 5.56 0.00 0.00 5.18
13 14 0.038251 TCTTCACAATGTCTCGCGCT 60.038 50.000 5.56 0.00 0.00 5.92
14 15 0.368227 CTCTTCACAATGTCTCGCGC 59.632 55.000 0.00 0.00 0.00 6.86
15 16 1.982612 TCTCTTCACAATGTCTCGCG 58.017 50.000 0.00 0.00 0.00 5.87
16 17 3.494626 TGTTTCTCTTCACAATGTCTCGC 59.505 43.478 0.00 0.00 0.00 5.03
17 18 5.657470 TTGTTTCTCTTCACAATGTCTCG 57.343 39.130 0.00 0.00 0.00 4.04
18 19 9.387123 GTTAATTGTTTCTCTTCACAATGTCTC 57.613 33.333 0.00 0.00 41.74 3.36
19 20 9.125026 AGTTAATTGTTTCTCTTCACAATGTCT 57.875 29.630 0.00 0.00 41.74 3.41
20 21 9.387123 GAGTTAATTGTTTCTCTTCACAATGTC 57.613 33.333 0.00 0.00 41.74 3.06
21 22 9.125026 AGAGTTAATTGTTTCTCTTCACAATGT 57.875 29.630 0.00 0.00 41.74 2.71
22 23 9.956720 AAGAGTTAATTGTTTCTCTTCACAATG 57.043 29.630 0.00 0.00 41.74 2.82
53 54 2.836262 CTGCTTCTGGAGATGACCATC 58.164 52.381 1.90 1.90 39.34 3.51
54 55 1.134159 GCTGCTTCTGGAGATGACCAT 60.134 52.381 0.00 0.00 39.34 3.55
55 56 0.251354 GCTGCTTCTGGAGATGACCA 59.749 55.000 0.00 0.00 38.33 4.02
56 57 0.251354 TGCTGCTTCTGGAGATGACC 59.749 55.000 0.00 0.00 33.10 4.02
57 58 1.367659 GTGCTGCTTCTGGAGATGAC 58.632 55.000 0.00 0.00 33.10 3.06
58 59 0.251354 GGTGCTGCTTCTGGAGATGA 59.749 55.000 0.00 0.00 33.10 2.92
59 60 0.252479 AGGTGCTGCTTCTGGAGATG 59.748 55.000 0.00 0.00 33.10 2.90
60 61 0.252479 CAGGTGCTGCTTCTGGAGAT 59.748 55.000 12.61 0.00 33.10 2.75
61 62 1.675801 CAGGTGCTGCTTCTGGAGA 59.324 57.895 12.61 0.00 33.10 3.71
62 63 4.298009 CAGGTGCTGCTTCTGGAG 57.702 61.111 12.61 0.00 34.56 3.86
65 66 0.610174 TAGACCAGGTGCTGCTTCTG 59.390 55.000 0.00 13.21 0.00 3.02
66 67 1.352083 TTAGACCAGGTGCTGCTTCT 58.648 50.000 0.00 0.00 0.00 2.85
67 68 2.185004 TTTAGACCAGGTGCTGCTTC 57.815 50.000 0.00 0.00 0.00 3.86
68 69 2.887151 ATTTAGACCAGGTGCTGCTT 57.113 45.000 0.00 0.00 0.00 3.91
69 70 3.455910 TCATATTTAGACCAGGTGCTGCT 59.544 43.478 0.00 0.00 0.00 4.24
70 71 3.808728 TCATATTTAGACCAGGTGCTGC 58.191 45.455 0.00 0.00 0.00 5.25
71 72 6.757897 TTTTCATATTTAGACCAGGTGCTG 57.242 37.500 0.00 0.00 0.00 4.41
72 73 7.175104 TCTTTTTCATATTTAGACCAGGTGCT 58.825 34.615 0.00 0.00 0.00 4.40
73 74 7.391148 TCTTTTTCATATTTAGACCAGGTGC 57.609 36.000 0.00 0.00 0.00 5.01
74 75 8.960591 ACATCTTTTTCATATTTAGACCAGGTG 58.039 33.333 0.00 0.00 0.00 4.00
75 76 8.960591 CACATCTTTTTCATATTTAGACCAGGT 58.039 33.333 0.00 0.00 0.00 4.00
76 77 9.177608 TCACATCTTTTTCATATTTAGACCAGG 57.822 33.333 0.00 0.00 0.00 4.45
77 78 9.994432 GTCACATCTTTTTCATATTTAGACCAG 57.006 33.333 0.00 0.00 0.00 4.00
78 79 8.956426 GGTCACATCTTTTTCATATTTAGACCA 58.044 33.333 0.00 0.00 39.16 4.02
79 80 8.122952 CGGTCACATCTTTTTCATATTTAGACC 58.877 37.037 0.00 0.00 36.76 3.85
80 81 8.879759 TCGGTCACATCTTTTTCATATTTAGAC 58.120 33.333 0.00 0.00 0.00 2.59
81 82 8.879759 GTCGGTCACATCTTTTTCATATTTAGA 58.120 33.333 0.00 0.00 0.00 2.10
82 83 8.122952 GGTCGGTCACATCTTTTTCATATTTAG 58.877 37.037 0.00 0.00 0.00 1.85
83 84 7.201574 CGGTCGGTCACATCTTTTTCATATTTA 60.202 37.037 0.00 0.00 0.00 1.40
84 85 6.403200 CGGTCGGTCACATCTTTTTCATATTT 60.403 38.462 0.00 0.00 0.00 1.40
85 86 5.064707 CGGTCGGTCACATCTTTTTCATATT 59.935 40.000 0.00 0.00 0.00 1.28
86 87 4.570772 CGGTCGGTCACATCTTTTTCATAT 59.429 41.667 0.00 0.00 0.00 1.78
87 88 3.930229 CGGTCGGTCACATCTTTTTCATA 59.070 43.478 0.00 0.00 0.00 2.15
88 89 2.742053 CGGTCGGTCACATCTTTTTCAT 59.258 45.455 0.00 0.00 0.00 2.57
89 90 2.139917 CGGTCGGTCACATCTTTTTCA 58.860 47.619 0.00 0.00 0.00 2.69
90 91 2.409975 TCGGTCGGTCACATCTTTTTC 58.590 47.619 0.00 0.00 0.00 2.29
91 92 2.036733 TCTCGGTCGGTCACATCTTTTT 59.963 45.455 0.00 0.00 0.00 1.94
92 93 1.616865 TCTCGGTCGGTCACATCTTTT 59.383 47.619 0.00 0.00 0.00 2.27
93 94 1.254026 TCTCGGTCGGTCACATCTTT 58.746 50.000 0.00 0.00 0.00 2.52
94 95 1.475403 ATCTCGGTCGGTCACATCTT 58.525 50.000 0.00 0.00 0.00 2.40
95 96 1.475403 AATCTCGGTCGGTCACATCT 58.525 50.000 0.00 0.00 0.00 2.90
96 97 3.431922 TTAATCTCGGTCGGTCACATC 57.568 47.619 0.00 0.00 0.00 3.06
97 98 3.880047 TTTAATCTCGGTCGGTCACAT 57.120 42.857 0.00 0.00 0.00 3.21
98 99 3.663995 TTTTAATCTCGGTCGGTCACA 57.336 42.857 0.00 0.00 0.00 3.58
99 100 3.742369 TGTTTTTAATCTCGGTCGGTCAC 59.258 43.478 0.00 0.00 0.00 3.67
100 101 3.742369 GTGTTTTTAATCTCGGTCGGTCA 59.258 43.478 0.00 0.00 0.00 4.02
101 102 3.742369 TGTGTTTTTAATCTCGGTCGGTC 59.258 43.478 0.00 0.00 0.00 4.79
102 103 3.731089 TGTGTTTTTAATCTCGGTCGGT 58.269 40.909 0.00 0.00 0.00 4.69
103 104 4.939509 ATGTGTTTTTAATCTCGGTCGG 57.060 40.909 0.00 0.00 0.00 4.79
104 105 6.823531 TGTTATGTGTTTTTAATCTCGGTCG 58.176 36.000 0.00 0.00 0.00 4.79
105 106 8.287503 AGTTGTTATGTGTTTTTAATCTCGGTC 58.712 33.333 0.00 0.00 0.00 4.79
106 107 8.161699 AGTTGTTATGTGTTTTTAATCTCGGT 57.838 30.769 0.00 0.00 0.00 4.69
107 108 9.458374 AAAGTTGTTATGTGTTTTTAATCTCGG 57.542 29.630 0.00 0.00 0.00 4.63
121 122 9.180678 CGCTAAGATTTTTGAAAGTTGTTATGT 57.819 29.630 0.00 0.00 0.00 2.29
122 123 8.638565 CCGCTAAGATTTTTGAAAGTTGTTATG 58.361 33.333 0.00 0.00 0.00 1.90
123 124 7.328493 GCCGCTAAGATTTTTGAAAGTTGTTAT 59.672 33.333 0.00 0.00 0.00 1.89
124 125 6.639279 GCCGCTAAGATTTTTGAAAGTTGTTA 59.361 34.615 0.00 0.00 0.00 2.41
125 126 5.462068 GCCGCTAAGATTTTTGAAAGTTGTT 59.538 36.000 0.00 0.00 0.00 2.83
126 127 4.982295 GCCGCTAAGATTTTTGAAAGTTGT 59.018 37.500 0.00 0.00 0.00 3.32
127 128 4.981674 TGCCGCTAAGATTTTTGAAAGTTG 59.018 37.500 0.00 0.00 0.00 3.16
128 129 5.195001 TGCCGCTAAGATTTTTGAAAGTT 57.805 34.783 0.00 0.00 0.00 2.66
129 130 4.846779 TGCCGCTAAGATTTTTGAAAGT 57.153 36.364 0.00 0.00 0.00 2.66
130 131 5.401550 TCATGCCGCTAAGATTTTTGAAAG 58.598 37.500 0.00 0.00 0.00 2.62
131 132 5.384063 TCATGCCGCTAAGATTTTTGAAA 57.616 34.783 0.00 0.00 0.00 2.69
132 133 4.675146 GCTCATGCCGCTAAGATTTTTGAA 60.675 41.667 0.00 0.00 0.00 2.69
133 134 3.181497 GCTCATGCCGCTAAGATTTTTGA 60.181 43.478 0.00 0.00 0.00 2.69
134 135 3.111098 GCTCATGCCGCTAAGATTTTTG 58.889 45.455 0.00 0.00 0.00 2.44
135 136 2.223340 CGCTCATGCCGCTAAGATTTTT 60.223 45.455 5.49 0.00 35.36 1.94
136 137 1.331756 CGCTCATGCCGCTAAGATTTT 59.668 47.619 5.49 0.00 35.36 1.82
137 138 0.940126 CGCTCATGCCGCTAAGATTT 59.060 50.000 5.49 0.00 35.36 2.17
138 139 1.502163 GCGCTCATGCCGCTAAGATT 61.502 55.000 19.03 0.00 36.40 2.40
139 140 1.958205 GCGCTCATGCCGCTAAGAT 60.958 57.895 19.03 0.00 36.40 2.40
140 141 2.586079 GCGCTCATGCCGCTAAGA 60.586 61.111 19.03 0.00 36.40 2.10
141 142 3.643978 GGCGCTCATGCCGCTAAG 61.644 66.667 23.25 2.07 46.75 2.18
148 149 2.250485 CTAATGCGGCGCTCATGC 59.750 61.111 33.26 7.47 0.00 4.06
149 150 1.566563 GACTAATGCGGCGCTCATG 59.433 57.895 33.26 21.24 0.00 3.07
150 151 1.951130 CGACTAATGCGGCGCTCAT 60.951 57.895 33.26 20.21 0.00 2.90
151 152 2.582226 CGACTAATGCGGCGCTCA 60.582 61.111 33.26 14.71 0.00 4.26
152 153 3.330853 CCGACTAATGCGGCGCTC 61.331 66.667 33.26 20.04 42.55 5.03
158 159 0.103208 AAGAGAGCCCGACTAATGCG 59.897 55.000 0.00 0.00 0.00 4.73
159 160 2.205911 GAAAGAGAGCCCGACTAATGC 58.794 52.381 0.00 0.00 0.00 3.56
160 161 2.168521 TGGAAAGAGAGCCCGACTAATG 59.831 50.000 0.00 0.00 0.00 1.90
161 162 2.467880 TGGAAAGAGAGCCCGACTAAT 58.532 47.619 0.00 0.00 0.00 1.73
162 163 1.933021 TGGAAAGAGAGCCCGACTAA 58.067 50.000 0.00 0.00 0.00 2.24
163 164 2.160721 ATGGAAAGAGAGCCCGACTA 57.839 50.000 0.00 0.00 0.00 2.59
164 165 1.280457 AATGGAAAGAGAGCCCGACT 58.720 50.000 0.00 0.00 0.00 4.18
165 166 2.981859 TAATGGAAAGAGAGCCCGAC 57.018 50.000 0.00 0.00 0.00 4.79
166 167 5.825593 ATTATAATGGAAAGAGAGCCCGA 57.174 39.130 0.00 0.00 0.00 5.14
167 168 6.712547 AGAAATTATAATGGAAAGAGAGCCCG 59.287 38.462 0.00 0.00 0.00 6.13
168 169 8.470657 AAGAAATTATAATGGAAAGAGAGCCC 57.529 34.615 0.00 0.00 0.00 5.19
169 170 9.125026 TGAAGAAATTATAATGGAAAGAGAGCC 57.875 33.333 0.00 0.00 0.00 4.70
184 185 9.440773 GGCCAAGAAGAAAATTGAAGAAATTAT 57.559 29.630 0.00 0.00 37.51 1.28
185 186 8.428063 TGGCCAAGAAGAAAATTGAAGAAATTA 58.572 29.630 0.61 0.00 37.51 1.40
186 187 7.227314 GTGGCCAAGAAGAAAATTGAAGAAATT 59.773 33.333 7.24 0.00 40.32 1.82
187 188 6.707608 GTGGCCAAGAAGAAAATTGAAGAAAT 59.292 34.615 7.24 0.00 0.00 2.17
188 189 6.048509 GTGGCCAAGAAGAAAATTGAAGAAA 58.951 36.000 7.24 0.00 0.00 2.52
189 190 5.363580 AGTGGCCAAGAAGAAAATTGAAGAA 59.636 36.000 7.24 0.00 0.00 2.52
190 191 4.895297 AGTGGCCAAGAAGAAAATTGAAGA 59.105 37.500 7.24 0.00 0.00 2.87
191 192 5.205759 AGTGGCCAAGAAGAAAATTGAAG 57.794 39.130 7.24 0.00 0.00 3.02
192 193 5.363580 AGAAGTGGCCAAGAAGAAAATTGAA 59.636 36.000 7.24 0.00 0.00 2.69
193 194 4.895297 AGAAGTGGCCAAGAAGAAAATTGA 59.105 37.500 7.24 0.00 0.00 2.57
194 195 5.205759 AGAAGTGGCCAAGAAGAAAATTG 57.794 39.130 7.24 0.00 0.00 2.32
195 196 5.876651 AAGAAGTGGCCAAGAAGAAAATT 57.123 34.783 7.24 0.00 0.00 1.82
196 197 6.721208 TGATAAGAAGTGGCCAAGAAGAAAAT 59.279 34.615 7.24 0.00 0.00 1.82
197 198 6.068010 TGATAAGAAGTGGCCAAGAAGAAAA 58.932 36.000 7.24 0.00 0.00 2.29
198 199 5.630121 TGATAAGAAGTGGCCAAGAAGAAA 58.370 37.500 7.24 0.00 0.00 2.52
199 200 5.241403 TGATAAGAAGTGGCCAAGAAGAA 57.759 39.130 7.24 0.00 0.00 2.52
200 201 4.908601 TGATAAGAAGTGGCCAAGAAGA 57.091 40.909 7.24 0.00 0.00 2.87
201 202 5.649395 TGAATGATAAGAAGTGGCCAAGAAG 59.351 40.000 7.24 0.00 0.00 2.85
202 203 5.569355 TGAATGATAAGAAGTGGCCAAGAA 58.431 37.500 7.24 0.00 0.00 2.52
203 204 5.178096 TGAATGATAAGAAGTGGCCAAGA 57.822 39.130 7.24 0.00 0.00 3.02
204 205 6.460676 GGAATGAATGATAAGAAGTGGCCAAG 60.461 42.308 7.24 0.00 0.00 3.61
246 247 1.275291 GGAGAGACACGGGATTTGTGA 59.725 52.381 0.00 0.00 39.73 3.58
250 251 2.498078 GAGAAGGAGAGACACGGGATTT 59.502 50.000 0.00 0.00 0.00 2.17
304 305 7.700322 ATACATATGCGAGTTAAACTCAGTG 57.300 36.000 1.58 0.00 45.30 3.66
336 337 2.514803 CCCCTTCCACAAAATTCGACT 58.485 47.619 0.00 0.00 0.00 4.18
354 355 1.632965 ATTTAGTCCCACCTCGCCCC 61.633 60.000 0.00 0.00 0.00 5.80
382 383 6.590677 ACGTTCCTATAAAAAGAAGAGAGTGC 59.409 38.462 0.00 0.00 0.00 4.40
383 384 9.804758 ATACGTTCCTATAAAAAGAAGAGAGTG 57.195 33.333 0.00 0.00 0.00 3.51
419 420 7.381678 GCTTTACTTATATGGGTGTCGAACTAG 59.618 40.741 0.00 0.00 0.00 2.57
428 429 6.377146 AGTTGTTGGCTTTACTTATATGGGTG 59.623 38.462 0.00 0.00 0.00 4.61
442 443 8.177119 TCTGATAAAAATACAGTTGTTGGCTT 57.823 30.769 0.00 0.00 33.93 4.35
444 445 8.699749 GTTTCTGATAAAAATACAGTTGTTGGC 58.300 33.333 0.00 0.00 33.93 4.52
515 516 2.476185 GCTGAAATTCGAACCCACGATG 60.476 50.000 0.00 0.00 41.82 3.84
518 519 0.871722 TGCTGAAATTCGAACCCACG 59.128 50.000 0.00 0.00 0.00 4.94
527 528 7.450627 GTGCTGAAACAAATATGCTGAAATTC 58.549 34.615 0.00 0.00 0.00 2.17
531 532 4.475028 CGTGCTGAAACAAATATGCTGAA 58.525 39.130 0.00 0.00 0.00 3.02
553 560 9.216117 AGTGTATTACGGATAAATAATTCTGCC 57.784 33.333 0.00 0.00 0.00 4.85
566 573 6.978659 CAGTCATGTGTAAGTGTATTACGGAT 59.021 38.462 0.00 0.00 0.00 4.18
586 593 1.403647 CCGGTATTCAACGCTCAGTCA 60.404 52.381 0.00 0.00 0.00 3.41
592 599 2.467566 AGTTTCCGGTATTCAACGCT 57.532 45.000 0.00 0.00 0.00 5.07
614 621 3.568007 TCTGTTTTTGCATAAACGCTCCT 59.432 39.130 22.32 0.00 40.14 3.69
617 624 3.728718 CGTTCTGTTTTTGCATAAACGCT 59.271 39.130 22.32 0.00 40.14 5.07
634 641 5.048294 AGTGTTCCAAACAGAAAAACGTTCT 60.048 36.000 0.00 0.00 43.10 3.01
635 642 5.158494 AGTGTTCCAAACAGAAAAACGTTC 58.842 37.500 0.00 0.00 43.10 3.95
638 645 7.539366 TCTTTAAGTGTTCCAAACAGAAAAACG 59.461 33.333 0.00 0.00 43.10 3.60
644 651 5.180271 ACGTCTTTAAGTGTTCCAAACAGA 58.820 37.500 0.00 0.00 43.10 3.41
700 876 2.498885 GGGCAAAATGGCTGAATCTCTT 59.501 45.455 3.86 0.00 43.20 2.85
704 880 0.179103 CGGGGCAAAATGGCTGAATC 60.179 55.000 3.86 0.00 43.20 2.52
705 881 0.904394 ACGGGGCAAAATGGCTGAAT 60.904 50.000 3.86 0.00 43.20 2.57
707 883 0.033601 ATACGGGGCAAAATGGCTGA 60.034 50.000 3.86 0.00 43.20 4.26
708 884 0.102844 CATACGGGGCAAAATGGCTG 59.897 55.000 3.86 0.31 43.20 4.85
709 885 0.324275 ACATACGGGGCAAAATGGCT 60.324 50.000 3.86 0.00 43.20 4.75
710 886 1.336755 CTACATACGGGGCAAAATGGC 59.663 52.381 0.00 0.00 42.88 4.40
711 887 2.616842 GACTACATACGGGGCAAAATGG 59.383 50.000 0.00 0.00 0.00 3.16
712 888 2.616842 GGACTACATACGGGGCAAAATG 59.383 50.000 0.00 0.00 0.00 2.32
716 892 1.502690 ATGGACTACATACGGGGCAA 58.497 50.000 0.00 0.00 38.26 4.52
717 893 2.385135 TATGGACTACATACGGGGCA 57.615 50.000 0.00 0.00 41.03 5.36
718 894 3.975168 AATATGGACTACATACGGGGC 57.025 47.619 0.00 0.00 44.41 5.80
719 895 5.477607 TCAAATATGGACTACATACGGGG 57.522 43.478 0.00 0.00 44.41 5.73
720 896 7.386851 AGATTCAAATATGGACTACATACGGG 58.613 38.462 0.00 0.00 44.41 5.28
721 897 8.307483 AGAGATTCAAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
749 925 9.025041 CCCTCCATTTCTAAATACAAGTCTTTT 57.975 33.333 0.00 0.00 0.00 2.27
750 926 8.390921 TCCCTCCATTTCTAAATACAAGTCTTT 58.609 33.333 0.00 0.00 0.00 2.52
751 927 7.928873 TCCCTCCATTTCTAAATACAAGTCTT 58.071 34.615 0.00 0.00 0.00 3.01
752 928 7.182930 ACTCCCTCCATTTCTAAATACAAGTCT 59.817 37.037 0.00 0.00 0.00 3.24
753 929 7.339482 ACTCCCTCCATTTCTAAATACAAGTC 58.661 38.462 0.00 0.00 0.00 3.01
754 930 7.272144 ACTCCCTCCATTTCTAAATACAAGT 57.728 36.000 0.00 0.00 0.00 3.16
755 931 9.853177 AATACTCCCTCCATTTCTAAATACAAG 57.147 33.333 0.00 0.00 0.00 3.16
816 992 8.905702 GTCTAGTACGTTCTTTATTTTTGTCGA 58.094 33.333 0.00 0.00 0.00 4.20
933 1110 5.125417 CCTTTCCATTCTTTATCGGCTTTCA 59.875 40.000 0.00 0.00 0.00 2.69
963 1141 6.605471 AGTGGGGATGGAAATAAAAGTTTC 57.395 37.500 0.00 0.00 37.37 2.78
966 1144 5.023452 GGAAGTGGGGATGGAAATAAAAGT 58.977 41.667 0.00 0.00 0.00 2.66
970 1148 3.206464 AGGGAAGTGGGGATGGAAATAA 58.794 45.455 0.00 0.00 0.00 1.40
1429 1788 7.172361 TGTTTCAATCGTGTCTACATCAAATCA 59.828 33.333 0.00 0.00 0.00 2.57
1561 1920 5.567138 AGTGCTAAATGAGTGCAATTACC 57.433 39.130 0.00 0.00 38.50 2.85
1730 2089 5.344933 CGAATACACACGATTGAGAGTTTGA 59.655 40.000 0.00 0.00 0.00 2.69
1731 2090 5.444613 CCGAATACACACGATTGAGAGTTTG 60.445 44.000 0.00 0.00 0.00 2.93
1732 2091 4.625742 CCGAATACACACGATTGAGAGTTT 59.374 41.667 0.00 0.00 0.00 2.66
1733 2092 4.174009 CCGAATACACACGATTGAGAGTT 58.826 43.478 0.00 0.00 0.00 3.01
1734 2093 3.428999 CCCGAATACACACGATTGAGAGT 60.429 47.826 0.00 0.00 0.00 3.24
1735 2094 3.116300 CCCGAATACACACGATTGAGAG 58.884 50.000 0.00 0.00 0.00 3.20
1736 2095 2.756207 TCCCGAATACACACGATTGAGA 59.244 45.455 0.00 0.00 0.00 3.27
1737 2096 3.159353 TCCCGAATACACACGATTGAG 57.841 47.619 0.00 0.00 0.00 3.02
1749 2108 1.207089 CAGCACCTGAGTTCCCGAATA 59.793 52.381 0.00 0.00 32.44 1.75
1765 2124 1.927487 ATCCTTGCATCCAAACAGCA 58.073 45.000 0.00 0.00 36.32 4.41
1807 2166 7.288810 TGCAGAAACCACAGAAAATAATTCT 57.711 32.000 0.00 0.00 0.00 2.40
2044 2403 3.717707 CATCTACCAGGTACATTCCACG 58.282 50.000 0.00 0.00 0.00 4.94
2070 2429 5.508200 AAGGTTTTCATACTCGTTGCAAA 57.492 34.783 0.00 0.00 0.00 3.68
2106 2465 7.148623 GCTTAGTCTTGTTCTGTACCATGTAAC 60.149 40.741 0.00 0.00 0.00 2.50
2334 2693 1.321474 CACCCTCAGCTGCTTTTTCA 58.679 50.000 9.47 0.00 0.00 2.69
2352 2711 0.400213 ATTCCTCAGCGAAACCACCA 59.600 50.000 0.00 0.00 0.00 4.17
2381 2740 0.179032 CCACCACTACTGCACCAACA 60.179 55.000 0.00 0.00 0.00 3.33
2395 2754 2.203788 ACGCTTCTCCTCCCACCA 60.204 61.111 0.00 0.00 0.00 4.17
2398 2757 3.068691 CCGACGCTTCTCCTCCCA 61.069 66.667 0.00 0.00 0.00 4.37
2428 2787 3.950794 GACGCATCAACGCCTCCCA 62.951 63.158 0.00 0.00 36.19 4.37
2603 2987 1.271856 TTGGCGATGAGGGACAAGTA 58.728 50.000 0.00 0.00 0.00 2.24
2643 3115 2.169352 AGCCTGTCAGCTATCGTCATTT 59.831 45.455 0.00 0.00 42.70 2.32
2848 3353 4.260702 GGAATACGTTCGGTTGTCAACAAA 60.261 41.667 17.29 8.14 34.93 2.83
2849 3354 3.248125 GGAATACGTTCGGTTGTCAACAA 59.752 43.478 17.29 1.40 35.10 2.83
2850 3355 2.801679 GGAATACGTTCGGTTGTCAACA 59.198 45.455 17.29 0.00 35.10 3.33
2916 3421 2.165234 CTCCAGATTCTCAACTCTGCGA 59.835 50.000 0.00 0.00 38.03 5.10
2917 3422 2.538437 CTCCAGATTCTCAACTCTGCG 58.462 52.381 0.00 0.00 38.03 5.18
2968 3473 5.047021 GCAGATGAGTGTAGGCTAATATCCA 60.047 44.000 0.00 0.00 0.00 3.41
2969 3474 5.186797 AGCAGATGAGTGTAGGCTAATATCC 59.813 44.000 0.00 0.00 0.00 2.59
2970 3475 6.279513 AGCAGATGAGTGTAGGCTAATATC 57.720 41.667 0.00 0.00 0.00 1.63
2971 3476 6.678568 AAGCAGATGAGTGTAGGCTAATAT 57.321 37.500 0.00 0.00 0.00 1.28
2972 3477 6.463049 GGAAAGCAGATGAGTGTAGGCTAATA 60.463 42.308 0.00 0.00 0.00 0.98
2973 3478 5.363939 GAAAGCAGATGAGTGTAGGCTAAT 58.636 41.667 0.00 0.00 0.00 1.73
2974 3479 4.383118 GGAAAGCAGATGAGTGTAGGCTAA 60.383 45.833 0.00 0.00 0.00 3.09
2987 3492 4.640771 TGAACCAGTTAGGAAAGCAGAT 57.359 40.909 0.00 0.00 41.22 2.90
2992 3497 4.216257 CACACCATGAACCAGTTAGGAAAG 59.784 45.833 0.00 0.00 41.22 2.62
3005 3510 8.676401 CATATTGAGAATGTAACACACCATGAA 58.324 33.333 0.00 0.00 0.00 2.57
3037 3542 5.613358 ATCACGAAGTTTCTTGCTTAAGG 57.387 39.130 4.29 0.00 41.61 2.69
3076 3581 7.148755 GCAAATCATGTGGTAAATGTGAACTTC 60.149 37.037 0.00 0.00 0.00 3.01
3082 3587 6.157904 TGAAGCAAATCATGTGGTAAATGTG 58.842 36.000 0.00 0.00 0.00 3.21
3097 3614 3.068590 CCCACACTTGAGTTGAAGCAAAT 59.931 43.478 0.00 0.00 0.00 2.32
3224 3741 4.513442 AGACTTCACAAAGTGCACTTACA 58.487 39.130 31.31 13.23 45.80 2.41
3531 4048 2.955022 ATCGCTCAGGCTGCCCATTC 62.955 60.000 16.57 1.68 36.09 2.67
3561 4078 2.821969 CTCCATGGGGTCAACTTCAAAG 59.178 50.000 13.02 0.00 34.93 2.77
3900 4417 7.767261 TGTTAGTAGCTGAAACACACAATTTT 58.233 30.769 0.00 0.00 0.00 1.82
4106 4625 7.431249 AGCTATTATTCATCTTCGTTTACGGA 58.569 34.615 2.09 0.00 40.29 4.69
4107 4626 7.381408 TGAGCTATTATTCATCTTCGTTTACGG 59.619 37.037 2.09 0.00 40.29 4.02
4248 4767 4.424061 TTGTTCTAATCATGTGCAGTGC 57.576 40.909 8.58 8.58 0.00 4.40
4368 4891 6.894339 TTCTGTAACTGATCTACACACTGA 57.106 37.500 0.00 0.00 0.00 3.41
4640 5182 7.566760 TTGTTTGTATCTGAACATCACAAGT 57.433 32.000 10.58 0.00 35.85 3.16
4641 5183 7.592533 CCTTTGTTTGTATCTGAACATCACAAG 59.407 37.037 12.44 0.00 35.75 3.16
4642 5184 7.424803 CCTTTGTTTGTATCTGAACATCACAA 58.575 34.615 10.58 10.58 35.85 3.33
4643 5185 6.514870 GCCTTTGTTTGTATCTGAACATCACA 60.515 38.462 0.00 0.00 35.85 3.58
4644 5186 5.858581 GCCTTTGTTTGTATCTGAACATCAC 59.141 40.000 0.00 0.00 35.85 3.06
4645 5187 5.769662 AGCCTTTGTTTGTATCTGAACATCA 59.230 36.000 0.00 0.00 35.85 3.07
4646 5188 6.259550 AGCCTTTGTTTGTATCTGAACATC 57.740 37.500 0.00 0.00 35.85 3.06
4647 5189 7.759489 TTAGCCTTTGTTTGTATCTGAACAT 57.241 32.000 0.00 0.00 35.85 2.71
4648 5190 7.575414 TTTAGCCTTTGTTTGTATCTGAACA 57.425 32.000 0.00 0.00 34.22 3.18
4649 5191 8.349983 TCTTTTAGCCTTTGTTTGTATCTGAAC 58.650 33.333 0.00 0.00 0.00 3.18
4650 5192 8.458573 TCTTTTAGCCTTTGTTTGTATCTGAA 57.541 30.769 0.00 0.00 0.00 3.02
4651 5193 8.635765 ATCTTTTAGCCTTTGTTTGTATCTGA 57.364 30.769 0.00 0.00 0.00 3.27
4692 5234 6.587226 TCACTCATATTTGCAAGCAAACATTC 59.413 34.615 21.04 0.00 46.80 2.67
4714 5256 2.433604 TCCCATCTCTCATGAGCTTCAC 59.566 50.000 18.36 0.00 40.03 3.18
4715 5257 2.755686 TCCCATCTCTCATGAGCTTCA 58.244 47.619 18.36 0.00 40.03 3.02
4716 5258 3.306919 GGATCCCATCTCTCATGAGCTTC 60.307 52.174 18.36 5.43 40.03 3.86
4717 5259 2.638855 GGATCCCATCTCTCATGAGCTT 59.361 50.000 18.36 2.03 40.03 3.74
4718 5260 2.259012 GGATCCCATCTCTCATGAGCT 58.741 52.381 18.36 2.21 40.03 4.09
4719 5261 1.976404 TGGATCCCATCTCTCATGAGC 59.024 52.381 18.36 0.27 40.03 4.26
4720 5262 5.720520 TCTTATGGATCCCATCTCTCATGAG 59.279 44.000 17.07 17.07 40.74 2.90
4721 5263 5.658474 TCTTATGGATCCCATCTCTCATGA 58.342 41.667 9.90 0.00 40.74 3.07
4722 5264 6.171921 GTTCTTATGGATCCCATCTCTCATG 58.828 44.000 9.90 0.00 40.74 3.07
4751 5307 5.482163 TGATCACATGACTGGTGTTCTTA 57.518 39.130 0.00 0.00 36.44 2.10
4752 5308 4.356405 TGATCACATGACTGGTGTTCTT 57.644 40.909 0.00 0.00 36.44 2.52
4753 5309 4.356405 TTGATCACATGACTGGTGTTCT 57.644 40.909 0.00 0.00 36.44 3.01
4754 5310 5.220739 GCTATTGATCACATGACTGGTGTTC 60.221 44.000 0.00 0.00 37.52 3.18
4755 5311 4.637534 GCTATTGATCACATGACTGGTGTT 59.362 41.667 0.00 0.00 37.52 3.32
4756 5312 4.080695 AGCTATTGATCACATGACTGGTGT 60.081 41.667 0.00 0.00 37.52 4.16
4757 5313 4.449131 AGCTATTGATCACATGACTGGTG 58.551 43.478 0.00 0.00 37.60 4.17
4758 5314 4.162888 TGAGCTATTGATCACATGACTGGT 59.837 41.667 0.00 0.00 33.24 4.00
4759 5315 4.700700 TGAGCTATTGATCACATGACTGG 58.299 43.478 0.00 0.00 33.24 4.00
4760 5316 5.989777 TCATGAGCTATTGATCACATGACTG 59.010 40.000 16.33 0.00 41.69 3.51
4761 5317 6.041751 TCTCATGAGCTATTGATCACATGACT 59.958 38.462 18.36 3.01 41.69 3.41
4762 5318 6.221659 TCTCATGAGCTATTGATCACATGAC 58.778 40.000 18.36 0.00 41.69 3.06
4764 5320 6.456501 TCTCTCATGAGCTATTGATCACATG 58.543 40.000 18.36 13.03 41.69 3.21
4765 5321 6.667558 TCTCTCATGAGCTATTGATCACAT 57.332 37.500 18.36 0.00 41.69 3.21
4766 5322 6.667558 ATCTCTCATGAGCTATTGATCACA 57.332 37.500 18.36 0.00 41.69 3.58
4767 5323 7.922278 GGATATCTCTCATGAGCTATTGATCAC 59.078 40.741 18.36 11.54 41.69 3.06
4768 5324 7.618512 TGGATATCTCTCATGAGCTATTGATCA 59.381 37.037 18.36 0.00 43.13 2.92
4769 5325 8.009622 TGGATATCTCTCATGAGCTATTGATC 57.990 38.462 18.36 13.70 40.03 2.92
4770 5326 7.840210 TCTGGATATCTCTCATGAGCTATTGAT 59.160 37.037 18.36 15.82 40.03 2.57
4771 5327 7.180663 TCTGGATATCTCTCATGAGCTATTGA 58.819 38.462 18.36 10.46 40.03 2.57
4772 5328 7.407393 TCTGGATATCTCTCATGAGCTATTG 57.593 40.000 18.36 5.65 40.03 1.90
4773 5329 8.433249 TTTCTGGATATCTCTCATGAGCTATT 57.567 34.615 18.36 5.32 40.03 1.73
4774 5330 7.124599 CCTTTCTGGATATCTCTCATGAGCTAT 59.875 40.741 18.36 14.87 37.90 2.97
4775 5331 6.436847 CCTTTCTGGATATCTCTCATGAGCTA 59.563 42.308 18.36 8.50 37.90 3.32
4776 5332 5.246656 CCTTTCTGGATATCTCTCATGAGCT 59.753 44.000 18.36 7.58 37.90 4.09
4777 5333 5.481105 CCTTTCTGGATATCTCTCATGAGC 58.519 45.833 18.36 2.52 37.90 4.26
4778 5334 5.011840 TGCCTTTCTGGATATCTCTCATGAG 59.988 44.000 17.07 17.07 38.76 2.90
4779 5335 4.903649 TGCCTTTCTGGATATCTCTCATGA 59.096 41.667 2.05 0.00 38.35 3.07
4780 5336 5.221682 ACTGCCTTTCTGGATATCTCTCATG 60.222 44.000 2.05 0.00 38.35 3.07
4781 5337 4.906664 ACTGCCTTTCTGGATATCTCTCAT 59.093 41.667 2.05 0.00 38.35 2.90
4782 5338 4.100653 CACTGCCTTTCTGGATATCTCTCA 59.899 45.833 2.05 0.00 38.35 3.27
4783 5339 4.502950 CCACTGCCTTTCTGGATATCTCTC 60.503 50.000 2.05 0.00 38.35 3.20
4784 5340 3.390639 CCACTGCCTTTCTGGATATCTCT 59.609 47.826 2.05 0.00 38.35 3.10
4785 5341 3.737850 CCACTGCCTTTCTGGATATCTC 58.262 50.000 2.05 0.00 38.35 2.75
4786 5342 2.158696 GCCACTGCCTTTCTGGATATCT 60.159 50.000 2.05 0.00 38.35 1.98
4787 5343 2.225467 GCCACTGCCTTTCTGGATATC 58.775 52.381 0.00 0.00 38.35 1.63
4788 5344 1.475751 CGCCACTGCCTTTCTGGATAT 60.476 52.381 0.00 0.00 38.35 1.63
4789 5345 0.107703 CGCCACTGCCTTTCTGGATA 60.108 55.000 0.00 0.00 38.35 2.59
4790 5346 1.377725 CGCCACTGCCTTTCTGGAT 60.378 57.895 0.00 0.00 38.35 3.41
4791 5347 2.032528 CGCCACTGCCTTTCTGGA 59.967 61.111 0.00 0.00 38.35 3.86
4792 5348 3.058160 CCGCCACTGCCTTTCTGG 61.058 66.667 0.00 0.00 39.35 3.86
4793 5349 2.032528 TCCGCCACTGCCTTTCTG 59.967 61.111 0.00 0.00 0.00 3.02
4794 5350 2.348998 CTCCGCCACTGCCTTTCT 59.651 61.111 0.00 0.00 0.00 2.52
4795 5351 3.435186 GCTCCGCCACTGCCTTTC 61.435 66.667 0.00 0.00 0.00 2.62
5108 5857 2.369394 GCTAATAGGCTTGGCACACTT 58.631 47.619 0.00 0.00 39.29 3.16
5113 5862 0.106708 CTCGGCTAATAGGCTTGGCA 59.893 55.000 12.07 0.00 38.85 4.92
5116 5865 2.910688 TTCCTCGGCTAATAGGCTTG 57.089 50.000 12.07 4.44 38.85 4.01
5122 5871 5.419542 GTGCATATCATTCCTCGGCTAATA 58.580 41.667 0.00 0.00 0.00 0.98
5171 5951 2.799916 GCGACACTCGTCCGACAC 60.800 66.667 0.00 0.00 42.81 3.67
5272 6069 0.459899 ACGTTGCTGATCGCCAGATA 59.540 50.000 8.52 0.00 45.78 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.