Multiple sequence alignment - TraesCS5A01G107800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G107800 chr5A 100.000 2775 0 0 2615 5389 188993336 188996110 0.000000e+00 5125.0
1 TraesCS5A01G107800 chr5A 100.000 2226 0 0 1 2226 188990722 188992947 0.000000e+00 4111.0
2 TraesCS5A01G107800 chr5A 92.948 553 31 3 4831 5383 678567876 678567332 0.000000e+00 798.0
3 TraesCS5A01G107800 chr5A 91.592 559 41 1 4831 5389 181436868 181436316 0.000000e+00 767.0
4 TraesCS5A01G107800 chr5A 97.351 151 3 1 1545 1695 664791262 664791113 6.930000e-64 255.0
5 TraesCS5A01G107800 chr5A 97.500 40 0 1 1731 1770 188992227 188992265 3.480000e-07 67.6
6 TraesCS5A01G107800 chr5A 97.500 40 0 1 1506 1544 188992452 188992491 3.480000e-07 67.6
7 TraesCS5A01G107800 chr5A 83.871 62 6 3 4748 4806 220909331 220909391 7.540000e-04 56.5
8 TraesCS5A01G107800 chr5D 96.762 2193 43 7 2646 4830 178553022 178550850 0.000000e+00 3631.0
9 TraesCS5A01G107800 chr5D 95.153 1238 39 14 327 1544 178554941 178553705 0.000000e+00 1934.0
10 TraesCS5A01G107800 chr5D 97.533 527 7 2 1695 2221 178553714 178553194 0.000000e+00 896.0
11 TraesCS5A01G107800 chr5D 96.309 298 9 2 1 297 525599806 525600102 6.270000e-134 488.0
12 TraesCS5A01G107800 chr5D 95.588 68 2 1 1730 1797 178553744 178553678 2.050000e-19 108.0
13 TraesCS5A01G107800 chr5D 97.222 36 1 0 1506 1541 178553678 178553643 1.620000e-05 62.1
14 TraesCS5A01G107800 chr5B 95.781 1351 40 5 3496 4830 167292766 167294115 0.000000e+00 2163.0
15 TraesCS5A01G107800 chr5B 96.878 1153 31 4 396 1544 167290137 167291288 0.000000e+00 1925.0
16 TraesCS5A01G107800 chr5B 98.284 816 14 0 2646 3461 167291952 167292767 0.000000e+00 1430.0
17 TraesCS5A01G107800 chr5B 97.936 533 9 2 1695 2226 167291279 167291810 0.000000e+00 922.0
18 TraesCS5A01G107800 chr5B 96.141 311 11 1 1 310 548742021 548741711 1.730000e-139 507.0
19 TraesCS5A01G107800 chr5B 96.875 64 1 1 1730 1793 167291249 167291311 7.380000e-19 106.0
20 TraesCS5A01G107800 chr5B 92.308 65 4 1 367 430 167290073 167290137 2.070000e-14 91.6
21 TraesCS5A01G107800 chr5B 94.872 39 1 1 1507 1544 167291316 167291354 5.830000e-05 60.2
22 TraesCS5A01G107800 chr4A 94.118 561 27 1 4829 5389 606137486 606136932 0.000000e+00 848.0
23 TraesCS5A01G107800 chr4A 93.939 561 28 3 4829 5389 606073949 606073395 0.000000e+00 843.0
24 TraesCS5A01G107800 chr4A 93.939 561 28 2 4829 5389 606217596 606217042 0.000000e+00 843.0
25 TraesCS5A01G107800 chr4A 93.583 561 30 1 4829 5389 605924576 605924022 0.000000e+00 832.0
26 TraesCS5A01G107800 chr4A 93.226 561 32 2 4829 5389 606291414 606290860 0.000000e+00 821.0
27 TraesCS5A01G107800 chr4A 97.452 157 3 1 1541 1697 643569262 643569107 3.200000e-67 267.0
28 TraesCS5A01G107800 chr4A 96.026 151 5 1 1545 1695 444153084 444152935 1.500000e-60 244.0
29 TraesCS5A01G107800 chr4A 80.488 123 12 7 996 1118 490360728 490360618 3.460000e-12 84.2
30 TraesCS5A01G107800 chr6A 93.750 560 29 1 4830 5389 235484982 235484429 0.000000e+00 835.0
31 TraesCS5A01G107800 chr2A 92.129 559 38 1 4831 5389 27505470 27504918 0.000000e+00 784.0
32 TraesCS5A01G107800 chr2A 95.208 313 14 1 1 312 700361374 700361062 1.350000e-135 494.0
33 TraesCS5A01G107800 chr2A 97.368 152 3 1 1544 1695 197253444 197253594 1.930000e-64 257.0
34 TraesCS5A01G107800 chr2A 87.273 55 5 2 4753 4806 214711760 214711707 1.620000e-05 62.1
35 TraesCS5A01G107800 chr6B 95.695 302 10 3 11 310 159983306 159983606 2.920000e-132 483.0
36 TraesCS5A01G107800 chr1B 92.308 325 22 3 1 324 215969379 215969701 4.920000e-125 459.0
37 TraesCS5A01G107800 chr1B 95.541 157 6 1 1545 1701 654103147 654102992 3.220000e-62 250.0
38 TraesCS5A01G107800 chr7A 93.016 315 18 4 1 313 709585916 709586228 1.770000e-124 457.0
39 TraesCS5A01G107800 chr1A 96.053 152 5 1 1545 1696 591088860 591088710 4.170000e-61 246.0
40 TraesCS5A01G107800 chr1A 87.273 55 5 2 4753 4806 95964691 95964638 1.620000e-05 62.1
41 TraesCS5A01G107800 chr3A 95.775 142 5 1 1554 1695 39603571 39603711 1.510000e-55 228.0
42 TraesCS5A01G107800 chr4D 80.488 123 12 7 996 1118 80885886 80885776 3.460000e-12 84.2
43 TraesCS5A01G107800 chr4D 84.375 64 9 1 4746 4809 447337665 447337603 1.620000e-05 62.1
44 TraesCS5A01G107800 chr4B 79.675 123 13 7 996 1118 113383752 113383642 1.610000e-10 78.7
45 TraesCS5A01G107800 chr4B 83.077 65 9 2 4744 4807 451830388 451830451 2.100000e-04 58.4
46 TraesCS5A01G107800 chr2D 91.667 48 4 0 4753 4800 53373337 53373384 3.480000e-07 67.6
47 TraesCS5A01G107800 chrUn 83.871 62 8 2 4750 4810 56776887 56776947 2.100000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G107800 chr5A 188990722 188996110 5388 False 2342.800000 5125 98.750000 1 5389 4 chr5A.!!$F2 5388
1 TraesCS5A01G107800 chr5A 678567332 678567876 544 True 798.000000 798 92.948000 4831 5383 1 chr5A.!!$R3 552
2 TraesCS5A01G107800 chr5A 181436316 181436868 552 True 767.000000 767 91.592000 4831 5389 1 chr5A.!!$R1 558
3 TraesCS5A01G107800 chr5D 178550850 178554941 4091 True 1326.220000 3631 96.451600 327 4830 5 chr5D.!!$R1 4503
4 TraesCS5A01G107800 chr5B 167290073 167294115 4042 False 956.828571 2163 96.133429 367 4830 7 chr5B.!!$F1 4463
5 TraesCS5A01G107800 chr4A 606136932 606137486 554 True 848.000000 848 94.118000 4829 5389 1 chr4A.!!$R5 560
6 TraesCS5A01G107800 chr4A 606073395 606073949 554 True 843.000000 843 93.939000 4829 5389 1 chr4A.!!$R4 560
7 TraesCS5A01G107800 chr4A 606217042 606217596 554 True 843.000000 843 93.939000 4829 5389 1 chr4A.!!$R6 560
8 TraesCS5A01G107800 chr4A 605924022 605924576 554 True 832.000000 832 93.583000 4829 5389 1 chr4A.!!$R3 560
9 TraesCS5A01G107800 chr4A 606290860 606291414 554 True 821.000000 821 93.226000 4829 5389 1 chr4A.!!$R7 560
10 TraesCS5A01G107800 chr6A 235484429 235484982 553 True 835.000000 835 93.750000 4830 5389 1 chr6A.!!$R1 559
11 TraesCS5A01G107800 chr2A 27504918 27505470 552 True 784.000000 784 92.129000 4831 5389 1 chr2A.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.031585 ACGCGCGCCTTGATAATCTA 59.968 50.0 32.58 0.0 0.00 1.98 F
1562 1620 0.179116 AGAGAGCTGCTATGCACACG 60.179 55.0 0.00 0.0 33.79 4.49 F
1613 1671 0.035881 CATATCAGCCCGTCCATGCT 59.964 55.0 0.00 0.0 38.67 3.79 F
1628 1686 0.179009 ATGCTTACCATCCAGCGCAT 60.179 50.0 11.47 0.0 39.04 4.73 F
1689 1747 0.315886 ATGCGTCGTCCACACAGTAA 59.684 50.0 0.00 0.0 0.00 2.24 F
2853 2936 0.792640 GTGTGGATCGTGTGCTTCAG 59.207 55.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1652 0.035881 AGCATGGACGGGCTGATATG 59.964 55.000 0.00 2.68 39.30 1.78 R
3148 3231 0.615331 TGGTCAATCCTCTGAGGCAC 59.385 55.000 19.08 11.61 34.61 5.01 R
3357 3440 2.093658 AGTCCAGTAATACTGTTGCCCG 60.094 50.000 18.00 3.18 44.50 6.13 R
3451 3534 5.995282 TGATTACTACAAAATCCATAGCCCG 59.005 40.000 0.00 0.00 33.28 6.13 R
3908 3999 3.439476 AGAGTCTGAAATGAGCACATTGC 59.561 43.478 10.25 9.00 44.67 3.56 R
5049 5158 0.106868 TTCCATGATGGGCTGCTGAG 60.107 55.000 12.26 0.00 38.32 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.993029 CCTACAAGAAGGTCTCACTAGG 57.007 50.000 0.00 0.00 31.46 3.02
24 25 4.345854 CCTACAAGAAGGTCTCACTAGGT 58.654 47.826 0.00 0.00 31.46 3.08
25 26 5.507637 CCTACAAGAAGGTCTCACTAGGTA 58.492 45.833 0.00 0.00 31.46 3.08
26 27 5.357596 CCTACAAGAAGGTCTCACTAGGTAC 59.642 48.000 0.00 0.00 31.46 3.34
27 28 4.737578 ACAAGAAGGTCTCACTAGGTACA 58.262 43.478 0.00 0.00 0.00 2.90
28 29 4.767928 ACAAGAAGGTCTCACTAGGTACAG 59.232 45.833 0.00 0.00 0.00 2.74
29 30 4.931027 AGAAGGTCTCACTAGGTACAGA 57.069 45.455 0.00 0.00 0.00 3.41
30 31 5.258216 AGAAGGTCTCACTAGGTACAGAA 57.742 43.478 0.00 0.00 0.00 3.02
31 32 5.833340 AGAAGGTCTCACTAGGTACAGAAT 58.167 41.667 0.00 0.00 0.00 2.40
32 33 5.654650 AGAAGGTCTCACTAGGTACAGAATG 59.345 44.000 0.00 0.00 46.00 2.67
33 34 3.702045 AGGTCTCACTAGGTACAGAATGC 59.298 47.826 0.00 0.00 42.53 3.56
34 35 3.447586 GGTCTCACTAGGTACAGAATGCA 59.552 47.826 0.00 0.00 42.53 3.96
35 36 4.440802 GGTCTCACTAGGTACAGAATGCAG 60.441 50.000 0.00 0.00 42.53 4.41
36 37 4.399618 GTCTCACTAGGTACAGAATGCAGA 59.600 45.833 0.00 0.00 42.53 4.26
37 38 5.068460 GTCTCACTAGGTACAGAATGCAGAT 59.932 44.000 0.00 0.00 42.53 2.90
38 39 5.068329 TCTCACTAGGTACAGAATGCAGATG 59.932 44.000 0.00 0.00 42.53 2.90
39 40 3.806521 CACTAGGTACAGAATGCAGATGC 59.193 47.826 0.00 0.00 42.53 3.91
40 41 3.708631 ACTAGGTACAGAATGCAGATGCT 59.291 43.478 6.35 0.00 42.53 3.79
41 42 3.191078 AGGTACAGAATGCAGATGCTC 57.809 47.619 6.35 0.00 42.53 4.26
42 43 2.770802 AGGTACAGAATGCAGATGCTCT 59.229 45.455 6.35 0.00 42.53 4.09
43 44 3.199508 AGGTACAGAATGCAGATGCTCTT 59.800 43.478 6.35 0.00 42.53 2.85
44 45 3.559242 GGTACAGAATGCAGATGCTCTTC 59.441 47.826 6.35 9.01 42.53 2.87
45 46 2.641305 ACAGAATGCAGATGCTCTTCC 58.359 47.619 6.35 0.00 42.53 3.46
46 47 2.026542 ACAGAATGCAGATGCTCTTCCA 60.027 45.455 6.35 0.00 42.53 3.53
47 48 3.215151 CAGAATGCAGATGCTCTTCCAT 58.785 45.455 6.35 0.00 42.66 3.41
48 49 4.141551 ACAGAATGCAGATGCTCTTCCATA 60.142 41.667 6.35 0.00 42.53 2.74
49 50 4.820173 CAGAATGCAGATGCTCTTCCATAA 59.180 41.667 6.35 0.00 42.66 1.90
50 51 5.473846 CAGAATGCAGATGCTCTTCCATAAT 59.526 40.000 6.35 0.00 42.66 1.28
51 52 6.016192 CAGAATGCAGATGCTCTTCCATAATT 60.016 38.462 6.35 0.00 42.66 1.40
52 53 5.707242 ATGCAGATGCTCTTCCATAATTG 57.293 39.130 6.35 0.00 42.66 2.32
53 54 3.887110 TGCAGATGCTCTTCCATAATTGG 59.113 43.478 6.35 0.00 42.44 3.16
54 55 3.887716 GCAGATGCTCTTCCATAATTGGT 59.112 43.478 0.00 0.00 40.05 3.67
55 56 4.261489 GCAGATGCTCTTCCATAATTGGTG 60.261 45.833 0.00 0.00 40.05 4.17
56 57 4.885907 CAGATGCTCTTCCATAATTGGTGT 59.114 41.667 0.00 0.00 44.06 4.16
57 58 5.008415 CAGATGCTCTTCCATAATTGGTGTC 59.992 44.000 0.00 0.00 44.06 3.67
58 59 4.299586 TGCTCTTCCATAATTGGTGTCA 57.700 40.909 0.00 0.00 44.06 3.58
59 60 4.264253 TGCTCTTCCATAATTGGTGTCAG 58.736 43.478 0.00 0.00 44.06 3.51
60 61 3.065925 GCTCTTCCATAATTGGTGTCAGC 59.934 47.826 0.00 0.00 44.06 4.26
61 62 4.521146 CTCTTCCATAATTGGTGTCAGCT 58.479 43.478 3.30 0.00 44.06 4.24
62 63 5.674525 CTCTTCCATAATTGGTGTCAGCTA 58.325 41.667 3.30 0.00 44.06 3.32
63 64 6.252599 TCTTCCATAATTGGTGTCAGCTAT 57.747 37.500 3.30 0.00 44.06 2.97
64 65 7.373617 TCTTCCATAATTGGTGTCAGCTATA 57.626 36.000 3.30 0.00 44.06 1.31
65 66 7.977818 TCTTCCATAATTGGTGTCAGCTATAT 58.022 34.615 3.30 0.00 44.06 0.86
66 67 9.100197 TCTTCCATAATTGGTGTCAGCTATATA 57.900 33.333 3.30 0.00 44.06 0.86
67 68 9.725019 CTTCCATAATTGGTGTCAGCTATATAA 57.275 33.333 3.30 0.00 44.06 0.98
95 96 9.802039 AAGTAAAATGGTAGTAGGTTTTGATCA 57.198 29.630 0.00 0.00 0.00 2.92
96 97 9.802039 AGTAAAATGGTAGTAGGTTTTGATCAA 57.198 29.630 3.38 3.38 0.00 2.57
102 103 9.927668 ATGGTAGTAGGTTTTGATCAATTTTTG 57.072 29.630 9.40 0.00 0.00 2.44
103 104 8.919145 TGGTAGTAGGTTTTGATCAATTTTTGT 58.081 29.630 9.40 0.00 0.00 2.83
127 128 8.739039 TGTATCTTGAATTCTTGTGTATTTGGG 58.261 33.333 7.05 0.00 0.00 4.12
128 129 7.781324 ATCTTGAATTCTTGTGTATTTGGGT 57.219 32.000 7.05 0.00 0.00 4.51
129 130 8.877864 ATCTTGAATTCTTGTGTATTTGGGTA 57.122 30.769 7.05 0.00 0.00 3.69
130 131 8.106247 TCTTGAATTCTTGTGTATTTGGGTAC 57.894 34.615 7.05 0.00 0.00 3.34
150 151 7.981102 GGTACCTGAAACTCAGTTTTTAGAT 57.019 36.000 3.76 0.00 42.80 1.98
151 152 7.807680 GGTACCTGAAACTCAGTTTTTAGATG 58.192 38.462 3.76 0.00 42.80 2.90
152 153 6.319141 ACCTGAAACTCAGTTTTTAGATGC 57.681 37.500 3.76 0.00 42.80 3.91
153 154 5.827797 ACCTGAAACTCAGTTTTTAGATGCA 59.172 36.000 3.76 0.00 42.80 3.96
154 155 6.321181 ACCTGAAACTCAGTTTTTAGATGCAA 59.679 34.615 3.76 0.00 42.80 4.08
155 156 6.638468 CCTGAAACTCAGTTTTTAGATGCAAC 59.362 38.462 3.76 0.00 42.80 4.17
156 157 7.333528 TGAAACTCAGTTTTTAGATGCAACT 57.666 32.000 3.76 0.86 35.77 3.16
157 158 7.195646 TGAAACTCAGTTTTTAGATGCAACTG 58.804 34.615 3.76 6.43 45.93 3.16
158 159 6.699575 AACTCAGTTTTTAGATGCAACTGT 57.300 33.333 6.76 0.00 45.16 3.55
159 160 6.305693 ACTCAGTTTTTAGATGCAACTGTC 57.694 37.500 6.76 0.00 45.16 3.51
160 161 5.822519 ACTCAGTTTTTAGATGCAACTGTCA 59.177 36.000 6.76 0.00 45.16 3.58
161 162 6.017605 ACTCAGTTTTTAGATGCAACTGTCAG 60.018 38.462 6.76 0.00 45.16 3.51
162 163 5.822519 TCAGTTTTTAGATGCAACTGTCAGT 59.177 36.000 6.76 0.00 45.16 3.41
163 164 6.017934 TCAGTTTTTAGATGCAACTGTCAGTC 60.018 38.462 5.82 0.00 45.16 3.51
164 165 6.017605 CAGTTTTTAGATGCAACTGTCAGTCT 60.018 38.462 5.82 1.13 41.64 3.24
165 166 7.171508 CAGTTTTTAGATGCAACTGTCAGTCTA 59.828 37.037 5.82 0.12 41.64 2.59
166 167 7.171678 AGTTTTTAGATGCAACTGTCAGTCTAC 59.828 37.037 5.82 0.00 29.36 2.59
167 168 5.722021 TTAGATGCAACTGTCAGTCTACA 57.278 39.130 5.82 5.53 0.00 2.74
168 169 4.607293 AGATGCAACTGTCAGTCTACAA 57.393 40.909 5.82 0.00 0.00 2.41
169 170 5.157940 AGATGCAACTGTCAGTCTACAAT 57.842 39.130 5.82 0.00 0.00 2.71
170 171 5.555017 AGATGCAACTGTCAGTCTACAATT 58.445 37.500 5.82 0.00 0.00 2.32
171 172 6.000219 AGATGCAACTGTCAGTCTACAATTT 59.000 36.000 5.82 0.00 0.00 1.82
172 173 5.422666 TGCAACTGTCAGTCTACAATTTG 57.577 39.130 5.82 0.00 0.00 2.32
173 174 4.881273 TGCAACTGTCAGTCTACAATTTGT 59.119 37.500 5.82 7.30 30.43 2.83
174 175 5.207768 GCAACTGTCAGTCTACAATTTGTG 58.792 41.667 12.30 0.00 30.43 3.33
175 176 5.220854 GCAACTGTCAGTCTACAATTTGTGT 60.221 40.000 12.30 0.00 44.82 3.72
176 177 6.018262 GCAACTGTCAGTCTACAATTTGTGTA 60.018 38.462 12.30 0.00 41.98 2.90
177 178 7.466725 GCAACTGTCAGTCTACAATTTGTGTAA 60.467 37.037 12.30 0.00 42.23 2.41
178 179 7.715265 ACTGTCAGTCTACAATTTGTGTAAG 57.285 36.000 12.30 2.12 42.23 2.34
179 180 6.202954 ACTGTCAGTCTACAATTTGTGTAAGC 59.797 38.462 12.30 0.00 42.23 3.09
180 181 5.468746 TGTCAGTCTACAATTTGTGTAAGCC 59.531 40.000 12.30 0.00 42.23 4.35
181 182 5.468746 GTCAGTCTACAATTTGTGTAAGCCA 59.531 40.000 12.30 0.00 42.23 4.75
182 183 5.468746 TCAGTCTACAATTTGTGTAAGCCAC 59.531 40.000 12.30 0.00 42.23 5.01
194 195 5.941948 GTGTAAGCCACAAGAAAGTACAT 57.058 39.130 0.00 0.00 43.92 2.29
195 196 5.689819 GTGTAAGCCACAAGAAAGTACATG 58.310 41.667 0.00 0.00 43.92 3.21
196 197 4.759693 TGTAAGCCACAAGAAAGTACATGG 59.240 41.667 0.00 0.00 32.95 3.66
197 198 3.508845 AGCCACAAGAAAGTACATGGT 57.491 42.857 0.00 0.00 0.00 3.55
198 199 3.149196 AGCCACAAGAAAGTACATGGTG 58.851 45.455 0.00 0.00 0.00 4.17
199 200 2.351738 GCCACAAGAAAGTACATGGTGC 60.352 50.000 0.00 0.00 0.00 5.01
200 201 2.884012 CCACAAGAAAGTACATGGTGCA 59.116 45.455 0.00 0.00 0.00 4.57
201 202 3.317711 CCACAAGAAAGTACATGGTGCAA 59.682 43.478 0.00 0.00 0.00 4.08
202 203 4.202101 CCACAAGAAAGTACATGGTGCAAA 60.202 41.667 0.00 0.00 0.00 3.68
203 204 5.509501 CCACAAGAAAGTACATGGTGCAAAT 60.510 40.000 0.00 0.00 0.00 2.32
204 205 5.984926 CACAAGAAAGTACATGGTGCAAATT 59.015 36.000 0.00 0.00 0.00 1.82
205 206 6.479660 CACAAGAAAGTACATGGTGCAAATTT 59.520 34.615 0.00 0.00 0.00 1.82
206 207 7.011295 CACAAGAAAGTACATGGTGCAAATTTT 59.989 33.333 0.00 0.00 0.00 1.82
207 208 7.552330 ACAAGAAAGTACATGGTGCAAATTTTT 59.448 29.630 0.00 0.00 0.00 1.94
269 270 9.996554 TTCTCTTTTCTACATTAGATGTCAACA 57.003 29.630 0.00 0.00 43.67 3.33
270 271 9.996554 TCTCTTTTCTACATTAGATGTCAACAA 57.003 29.630 0.00 0.00 43.67 2.83
272 273 9.996554 TCTTTTCTACATTAGATGTCAACAAGA 57.003 29.630 0.00 0.66 43.67 3.02
277 278 9.534565 TCTACATTAGATGTCAACAAGATTAGC 57.465 33.333 0.00 0.00 43.67 3.09
278 279 7.239166 ACATTAGATGTCAACAAGATTAGCG 57.761 36.000 0.00 0.00 39.92 4.26
279 280 6.258727 ACATTAGATGTCAACAAGATTAGCGG 59.741 38.462 0.00 0.00 39.92 5.52
280 281 3.535561 AGATGTCAACAAGATTAGCGGG 58.464 45.455 0.00 0.00 0.00 6.13
281 282 1.448985 TGTCAACAAGATTAGCGGGC 58.551 50.000 0.00 0.00 0.00 6.13
282 283 0.373716 GTCAACAAGATTAGCGGGCG 59.626 55.000 0.00 0.00 0.00 6.13
283 284 1.062525 CAACAAGATTAGCGGGCGC 59.937 57.895 0.00 0.00 42.33 6.53
284 285 1.376683 AACAAGATTAGCGGGCGCA 60.377 52.632 10.83 0.00 44.88 6.09
285 286 1.369091 AACAAGATTAGCGGGCGCAG 61.369 55.000 10.83 3.20 44.88 5.18
302 303 3.860125 GCAACGCGCGCCTTGATA 61.860 61.111 35.89 0.00 0.00 2.15
303 304 2.781957 CAACGCGCGCCTTGATAA 59.218 55.556 30.70 0.00 0.00 1.75
304 305 1.351707 CAACGCGCGCCTTGATAAT 59.648 52.632 30.70 3.21 0.00 1.28
305 306 0.654472 CAACGCGCGCCTTGATAATC 60.654 55.000 30.70 0.00 0.00 1.75
306 307 0.810031 AACGCGCGCCTTGATAATCT 60.810 50.000 32.58 1.63 0.00 2.40
307 308 0.031585 ACGCGCGCCTTGATAATCTA 59.968 50.000 32.58 0.00 0.00 1.98
308 309 0.710567 CGCGCGCCTTGATAATCTAG 59.289 55.000 27.72 1.87 0.00 2.43
309 310 1.784525 GCGCGCCTTGATAATCTAGT 58.215 50.000 23.24 0.00 0.00 2.57
310 311 1.457303 GCGCGCCTTGATAATCTAGTG 59.543 52.381 23.24 0.00 0.00 2.74
311 312 2.743938 CGCGCCTTGATAATCTAGTGT 58.256 47.619 0.00 0.00 0.00 3.55
312 313 3.123804 CGCGCCTTGATAATCTAGTGTT 58.876 45.455 0.00 0.00 0.00 3.32
313 314 3.182572 CGCGCCTTGATAATCTAGTGTTC 59.817 47.826 0.00 0.00 0.00 3.18
314 315 4.372656 GCGCCTTGATAATCTAGTGTTCT 58.627 43.478 0.00 0.00 0.00 3.01
315 316 4.446051 GCGCCTTGATAATCTAGTGTTCTC 59.554 45.833 0.00 0.00 0.00 2.87
316 317 4.985409 CGCCTTGATAATCTAGTGTTCTCC 59.015 45.833 0.00 0.00 0.00 3.71
317 318 4.985409 GCCTTGATAATCTAGTGTTCTCCG 59.015 45.833 0.00 0.00 0.00 4.63
318 319 5.452077 GCCTTGATAATCTAGTGTTCTCCGT 60.452 44.000 0.00 0.00 0.00 4.69
319 320 6.238953 GCCTTGATAATCTAGTGTTCTCCGTA 60.239 42.308 0.00 0.00 0.00 4.02
320 321 7.524038 GCCTTGATAATCTAGTGTTCTCCGTAT 60.524 40.741 0.00 0.00 0.00 3.06
321 322 9.011095 CCTTGATAATCTAGTGTTCTCCGTATA 57.989 37.037 0.00 0.00 0.00 1.47
324 325 9.734984 TGATAATCTAGTGTTCTCCGTATATGA 57.265 33.333 0.00 0.00 0.00 2.15
334 335 6.040955 TGTTCTCCGTATATGAAGATGCTCTT 59.959 38.462 0.00 0.00 39.87 2.85
392 400 8.783660 AAAATAAAAATAGAATCCCCCTCTCC 57.216 34.615 0.00 0.00 0.00 3.71
429 472 1.061411 CACTCATCACGCATTGCCG 59.939 57.895 2.41 1.05 0.00 5.69
463 506 1.069255 GACGAGGAGGAAGCGAAAAC 58.931 55.000 0.00 0.00 0.00 2.43
477 524 1.202582 CGAAAACCCACCACACAAACA 59.797 47.619 0.00 0.00 0.00 2.83
556 603 2.203422 CCTCCCAACGCCAAACCA 60.203 61.111 0.00 0.00 0.00 3.67
574 626 1.456705 AAACCCACACACCGCCATT 60.457 52.632 0.00 0.00 0.00 3.16
964 1017 4.282195 AGAGAAACAGAGGAGTACAACCAG 59.718 45.833 10.84 4.16 0.00 4.00
967 1020 2.260822 ACAGAGGAGTACAACCAGCAT 58.739 47.619 10.84 0.00 0.00 3.79
981 1034 1.576356 CAGCATAGCGGGAGACTTTC 58.424 55.000 0.00 0.00 0.00 2.62
1104 1157 0.321653 GGAACTGCCTCGGACATTGT 60.322 55.000 0.00 0.00 0.00 2.71
1146 1199 3.769189 TGTCCCTGGGTGAATCTAGTA 57.231 47.619 13.56 0.00 0.00 1.82
1196 1249 5.627499 TCCTGTTGCTGTAATGATTGTTC 57.373 39.130 0.00 0.00 0.00 3.18
1218 1272 1.659098 GTTTCGGGTCTGTTAGATGCG 59.341 52.381 0.00 0.00 0.00 4.73
1253 1307 9.777575 ATGCAAAATTTTAATGCTATTTTCTGC 57.222 25.926 13.07 5.17 40.66 4.26
1504 1562 3.577805 AGAGCCACAGGTTTTACTTGT 57.422 42.857 0.00 0.00 39.10 3.16
1534 1592 4.238669 AGGATTTTAGGGATCTGGAGGAG 58.761 47.826 0.00 0.00 0.00 3.69
1535 1593 4.077745 AGGATTTTAGGGATCTGGAGGAGA 60.078 45.833 0.00 0.00 34.25 3.71
1536 1594 4.660771 GGATTTTAGGGATCTGGAGGAGAA 59.339 45.833 0.00 0.00 33.12 2.87
1537 1595 5.132816 GGATTTTAGGGATCTGGAGGAGAAA 59.867 44.000 0.00 0.00 33.12 2.52
1538 1596 5.700402 TTTTAGGGATCTGGAGGAGAAAG 57.300 43.478 0.00 0.00 33.12 2.62
1539 1597 4.626942 TTAGGGATCTGGAGGAGAAAGA 57.373 45.455 0.00 0.00 33.12 2.52
1540 1598 3.498614 AGGGATCTGGAGGAGAAAGAA 57.501 47.619 0.00 0.00 33.12 2.52
1541 1599 4.019657 AGGGATCTGGAGGAGAAAGAAT 57.980 45.455 0.00 0.00 33.12 2.40
1542 1600 4.378961 AGGGATCTGGAGGAGAAAGAATT 58.621 43.478 0.00 0.00 33.12 2.17
1543 1601 5.542743 AGGGATCTGGAGGAGAAAGAATTA 58.457 41.667 0.00 0.00 33.12 1.40
1544 1602 5.606329 AGGGATCTGGAGGAGAAAGAATTAG 59.394 44.000 0.00 0.00 33.12 1.73
1545 1603 5.604650 GGGATCTGGAGGAGAAAGAATTAGA 59.395 44.000 0.00 0.00 33.12 2.10
1546 1604 6.239572 GGGATCTGGAGGAGAAAGAATTAGAG 60.240 46.154 0.00 0.00 33.12 2.43
1547 1605 6.553100 GGATCTGGAGGAGAAAGAATTAGAGA 59.447 42.308 0.00 0.00 33.12 3.10
1548 1606 7.255942 GGATCTGGAGGAGAAAGAATTAGAGAG 60.256 44.444 0.00 0.00 33.12 3.20
1549 1607 5.362430 TCTGGAGGAGAAAGAATTAGAGAGC 59.638 44.000 0.00 0.00 0.00 4.09
1550 1608 5.276440 TGGAGGAGAAAGAATTAGAGAGCT 58.724 41.667 0.00 0.00 0.00 4.09
1551 1609 5.128499 TGGAGGAGAAAGAATTAGAGAGCTG 59.872 44.000 0.00 0.00 0.00 4.24
1552 1610 5.022282 AGGAGAAAGAATTAGAGAGCTGC 57.978 43.478 0.00 0.00 0.00 5.25
1553 1611 4.716287 AGGAGAAAGAATTAGAGAGCTGCT 59.284 41.667 0.00 0.00 0.00 4.24
1554 1612 5.896678 AGGAGAAAGAATTAGAGAGCTGCTA 59.103 40.000 0.15 0.00 0.00 3.49
1555 1613 6.554605 AGGAGAAAGAATTAGAGAGCTGCTAT 59.445 38.462 0.15 0.00 0.00 2.97
1556 1614 6.646240 GGAGAAAGAATTAGAGAGCTGCTATG 59.354 42.308 0.00 0.00 0.00 2.23
1557 1615 5.990996 AGAAAGAATTAGAGAGCTGCTATGC 59.009 40.000 0.00 0.00 0.00 3.14
1558 1616 4.952071 AGAATTAGAGAGCTGCTATGCA 57.048 40.909 0.00 0.00 36.92 3.96
1559 1617 4.630111 AGAATTAGAGAGCTGCTATGCAC 58.370 43.478 0.00 0.00 33.79 4.57
1560 1618 4.100653 AGAATTAGAGAGCTGCTATGCACA 59.899 41.667 0.00 0.00 33.79 4.57
1561 1619 2.879002 TAGAGAGCTGCTATGCACAC 57.121 50.000 0.00 0.00 33.79 3.82
1562 1620 0.179116 AGAGAGCTGCTATGCACACG 60.179 55.000 0.00 0.00 33.79 4.49
1563 1621 0.179127 GAGAGCTGCTATGCACACGA 60.179 55.000 0.00 0.00 33.79 4.35
1564 1622 0.459237 AGAGCTGCTATGCACACGAC 60.459 55.000 0.15 0.00 33.79 4.34
1565 1623 1.746727 GAGCTGCTATGCACACGACG 61.747 60.000 0.15 0.00 33.79 5.12
1566 1624 2.697425 CTGCTATGCACACGACGC 59.303 61.111 0.00 0.00 33.79 5.19
1567 1625 1.807165 CTGCTATGCACACGACGCT 60.807 57.895 0.00 0.00 33.79 5.07
1568 1626 2.017458 CTGCTATGCACACGACGCTG 62.017 60.000 0.00 0.00 33.79 5.18
1569 1627 2.094659 GCTATGCACACGACGCTGT 61.095 57.895 0.00 0.00 0.00 4.40
1570 1628 1.991430 CTATGCACACGACGCTGTC 59.009 57.895 0.00 0.00 0.00 3.51
1571 1629 1.413767 CTATGCACACGACGCTGTCC 61.414 60.000 0.00 0.00 0.00 4.02
1579 1637 4.814294 GACGCTGTCCGGCCGATT 62.814 66.667 30.73 1.19 39.74 3.34
1580 1638 4.388499 ACGCTGTCCGGCCGATTT 62.388 61.111 30.73 0.00 42.52 2.17
1581 1639 3.864686 CGCTGTCCGGCCGATTTG 61.865 66.667 30.73 15.08 0.00 2.32
1582 1640 2.746277 GCTGTCCGGCCGATTTGT 60.746 61.111 30.73 0.00 0.00 2.83
1583 1641 3.039202 GCTGTCCGGCCGATTTGTG 62.039 63.158 30.73 8.93 0.00 3.33
1584 1642 3.039202 CTGTCCGGCCGATTTGTGC 62.039 63.158 30.73 8.57 0.00 4.57
1585 1643 3.053291 GTCCGGCCGATTTGTGCA 61.053 61.111 30.73 0.00 0.00 4.57
1586 1644 3.053291 TCCGGCCGATTTGTGCAC 61.053 61.111 30.73 10.75 0.00 4.57
1587 1645 4.459331 CCGGCCGATTTGTGCACG 62.459 66.667 30.73 0.44 0.00 5.34
1588 1646 3.418913 CGGCCGATTTGTGCACGA 61.419 61.111 24.07 7.71 0.00 4.35
1589 1647 2.175811 GGCCGATTTGTGCACGAC 59.824 61.111 13.13 0.00 0.00 4.34
1590 1648 2.612567 GGCCGATTTGTGCACGACA 61.613 57.895 13.13 1.93 0.00 4.35
1591 1649 1.501741 GCCGATTTGTGCACGACAT 59.498 52.632 13.13 6.89 33.40 3.06
1592 1650 0.521242 GCCGATTTGTGCACGACATC 60.521 55.000 13.13 13.98 33.40 3.06
1593 1651 0.795698 CCGATTTGTGCACGACATCA 59.204 50.000 13.13 0.00 33.40 3.07
1594 1652 1.464023 CCGATTTGTGCACGACATCAC 60.464 52.381 13.13 0.00 33.40 3.06
1595 1653 1.194322 CGATTTGTGCACGACATCACA 59.806 47.619 13.13 0.00 40.98 3.58
1596 1654 2.159667 CGATTTGTGCACGACATCACAT 60.160 45.455 13.13 0.00 42.07 3.21
1597 1655 3.061965 CGATTTGTGCACGACATCACATA 59.938 43.478 13.13 0.00 42.07 2.29
1598 1656 4.260334 CGATTTGTGCACGACATCACATAT 60.260 41.667 13.13 0.00 42.07 1.78
1599 1657 4.598406 TTTGTGCACGACATCACATATC 57.402 40.909 13.13 0.00 42.07 1.63
1600 1658 3.244033 TGTGCACGACATCACATATCA 57.756 42.857 13.13 0.00 38.18 2.15
1601 1659 3.189285 TGTGCACGACATCACATATCAG 58.811 45.455 13.13 0.00 38.18 2.90
1602 1660 2.033407 GTGCACGACATCACATATCAGC 60.033 50.000 0.00 0.00 33.63 4.26
1603 1661 1.528586 GCACGACATCACATATCAGCC 59.471 52.381 0.00 0.00 0.00 4.85
1604 1662 2.138320 CACGACATCACATATCAGCCC 58.862 52.381 0.00 0.00 0.00 5.19
1605 1663 1.269778 ACGACATCACATATCAGCCCG 60.270 52.381 0.00 0.00 0.00 6.13
1606 1664 1.269778 CGACATCACATATCAGCCCGT 60.270 52.381 0.00 0.00 0.00 5.28
1607 1665 2.408050 GACATCACATATCAGCCCGTC 58.592 52.381 0.00 0.00 0.00 4.79
1608 1666 1.070758 ACATCACATATCAGCCCGTCC 59.929 52.381 0.00 0.00 0.00 4.79
1609 1667 1.070601 CATCACATATCAGCCCGTCCA 59.929 52.381 0.00 0.00 0.00 4.02
1610 1668 1.423584 TCACATATCAGCCCGTCCAT 58.576 50.000 0.00 0.00 0.00 3.41
1611 1669 1.070601 TCACATATCAGCCCGTCCATG 59.929 52.381 0.00 0.00 0.00 3.66
1612 1670 0.250467 ACATATCAGCCCGTCCATGC 60.250 55.000 0.00 0.00 0.00 4.06
1613 1671 0.035881 CATATCAGCCCGTCCATGCT 59.964 55.000 0.00 0.00 38.67 3.79
1614 1672 0.767375 ATATCAGCCCGTCCATGCTT 59.233 50.000 0.00 0.00 35.12 3.91
1615 1673 1.419381 TATCAGCCCGTCCATGCTTA 58.581 50.000 0.00 0.00 35.12 3.09
1616 1674 0.179045 ATCAGCCCGTCCATGCTTAC 60.179 55.000 0.00 0.00 35.12 2.34
1617 1675 1.819632 CAGCCCGTCCATGCTTACC 60.820 63.158 0.00 0.00 35.12 2.85
1618 1676 2.270850 GCCCGTCCATGCTTACCA 59.729 61.111 0.00 0.00 0.00 3.25
1619 1677 1.152963 GCCCGTCCATGCTTACCAT 60.153 57.895 0.00 0.00 33.39 3.55
1620 1678 1.166531 GCCCGTCCATGCTTACCATC 61.167 60.000 0.00 0.00 29.71 3.51
1621 1679 0.535102 CCCGTCCATGCTTACCATCC 60.535 60.000 0.00 0.00 29.71 3.51
1622 1680 0.180171 CCGTCCATGCTTACCATCCA 59.820 55.000 0.00 0.00 29.71 3.41
1623 1681 1.586422 CGTCCATGCTTACCATCCAG 58.414 55.000 0.00 0.00 29.71 3.86
1624 1682 1.312815 GTCCATGCTTACCATCCAGC 58.687 55.000 0.00 0.00 36.49 4.85
1625 1683 0.179048 TCCATGCTTACCATCCAGCG 60.179 55.000 0.00 0.00 39.04 5.18
1626 1684 1.650912 CATGCTTACCATCCAGCGC 59.349 57.895 0.00 0.00 39.04 5.92
1627 1685 1.096967 CATGCTTACCATCCAGCGCA 61.097 55.000 11.47 0.00 39.04 6.09
1628 1686 0.179009 ATGCTTACCATCCAGCGCAT 60.179 50.000 11.47 0.00 39.04 4.73
1629 1687 0.394216 TGCTTACCATCCAGCGCATT 60.394 50.000 11.47 0.00 39.04 3.56
1630 1688 0.740737 GCTTACCATCCAGCGCATTT 59.259 50.000 11.47 0.00 0.00 2.32
1631 1689 1.534595 GCTTACCATCCAGCGCATTTG 60.535 52.381 11.47 0.00 0.00 2.32
1632 1690 2.016318 CTTACCATCCAGCGCATTTGA 58.984 47.619 11.47 0.00 0.00 2.69
1633 1691 1.667236 TACCATCCAGCGCATTTGAG 58.333 50.000 11.47 0.00 0.00 3.02
1634 1692 1.065273 CCATCCAGCGCATTTGAGC 59.935 57.895 11.47 0.00 41.28 4.26
1642 1700 3.518003 GCATTTGAGCGGCTGGAT 58.482 55.556 7.50 0.00 0.00 3.41
1643 1701 1.811860 GCATTTGAGCGGCTGGATT 59.188 52.632 7.50 0.00 0.00 3.01
1644 1702 0.526954 GCATTTGAGCGGCTGGATTG 60.527 55.000 7.50 3.64 0.00 2.67
1645 1703 0.526954 CATTTGAGCGGCTGGATTGC 60.527 55.000 7.50 0.00 0.00 3.56
1646 1704 1.996786 ATTTGAGCGGCTGGATTGCG 61.997 55.000 7.50 0.00 0.00 4.85
1650 1708 4.619140 GCGGCTGGATTGCGCATC 62.619 66.667 12.75 11.15 34.48 3.91
1651 1709 4.303603 CGGCTGGATTGCGCATCG 62.304 66.667 12.75 3.28 31.73 3.84
1652 1710 3.204827 GGCTGGATTGCGCATCGT 61.205 61.111 12.75 0.00 31.73 3.73
1653 1711 2.023741 GCTGGATTGCGCATCGTG 59.976 61.111 12.75 8.34 31.73 4.35
1654 1712 2.753966 GCTGGATTGCGCATCGTGT 61.754 57.895 12.75 0.00 31.73 4.49
1655 1713 1.349627 CTGGATTGCGCATCGTGTC 59.650 57.895 12.75 4.80 31.73 3.67
1656 1714 2.321060 GGATTGCGCATCGTGTCG 59.679 61.111 12.75 0.00 31.73 4.35
1661 1719 4.196826 GCGCATCGTGTCGCTGTC 62.197 66.667 0.30 0.00 46.92 3.51
1662 1720 3.890705 CGCATCGTGTCGCTGTCG 61.891 66.667 0.00 0.00 0.00 4.35
1663 1721 2.805353 GCATCGTGTCGCTGTCGT 60.805 61.111 0.00 0.00 36.96 4.34
1664 1722 2.778997 GCATCGTGTCGCTGTCGTC 61.779 63.158 0.00 0.00 36.96 4.20
1665 1723 2.152699 CATCGTGTCGCTGTCGTCC 61.153 63.158 0.00 0.00 36.96 4.79
1666 1724 3.662623 ATCGTGTCGCTGTCGTCCG 62.663 63.158 0.00 0.00 36.96 4.79
1684 1742 4.134187 CGCATGCGTCGTCCACAC 62.134 66.667 31.33 0.00 34.35 3.82
1685 1743 3.041351 GCATGCGTCGTCCACACA 61.041 61.111 0.00 0.00 0.00 3.72
1686 1744 3.015293 GCATGCGTCGTCCACACAG 62.015 63.158 0.00 0.00 0.00 3.66
1687 1745 1.664649 CATGCGTCGTCCACACAGT 60.665 57.895 0.00 0.00 0.00 3.55
1688 1746 0.388006 CATGCGTCGTCCACACAGTA 60.388 55.000 0.00 0.00 0.00 2.74
1689 1747 0.315886 ATGCGTCGTCCACACAGTAA 59.684 50.000 0.00 0.00 0.00 2.24
1690 1748 0.315886 TGCGTCGTCCACACAGTAAT 59.684 50.000 0.00 0.00 0.00 1.89
1691 1749 1.269883 TGCGTCGTCCACACAGTAATT 60.270 47.619 0.00 0.00 0.00 1.40
1692 1750 1.796459 GCGTCGTCCACACAGTAATTT 59.204 47.619 0.00 0.00 0.00 1.82
1693 1751 2.159881 GCGTCGTCCACACAGTAATTTC 60.160 50.000 0.00 0.00 0.00 2.17
1763 1821 5.700402 TTTTAGGGATCTGGAGGAGAAAG 57.300 43.478 0.00 0.00 33.12 2.62
1802 1860 5.292765 TCTAGAAGTTTGTTGTCAGCAGAG 58.707 41.667 0.00 0.00 0.00 3.35
1982 2041 4.792521 AGCAGAAGTTCACCACTAGTAG 57.207 45.455 5.50 0.00 32.94 2.57
2222 2281 7.977789 ATTCACTTCTTTGGTTTGTTTGTTT 57.022 28.000 0.00 0.00 0.00 2.83
2224 2283 7.876896 TCACTTCTTTGGTTTGTTTGTTTAC 57.123 32.000 0.00 0.00 0.00 2.01
2225 2284 7.662897 TCACTTCTTTGGTTTGTTTGTTTACT 58.337 30.769 0.00 0.00 0.00 2.24
2853 2936 0.792640 GTGTGGATCGTGTGCTTCAG 59.207 55.000 0.00 0.00 0.00 3.02
3061 3144 5.537295 TCCAACTTGTGTACTCTTAGTGCTA 59.463 40.000 0.00 0.00 31.77 3.49
3357 3440 6.808008 ATAGCAGTATCCATTATTGTGTGC 57.192 37.500 0.00 0.00 0.00 4.57
3451 3534 5.046663 AGTTGAGGATCTCTGTTTCTCCTTC 60.047 44.000 0.00 0.00 38.24 3.46
3460 3543 1.209504 TGTTTCTCCTTCGGGCTATGG 59.790 52.381 0.00 0.00 34.44 2.74
3665 3756 7.564793 TCAATAGCATGTCTACCTTTGTGTAT 58.435 34.615 0.00 0.00 0.00 2.29
3957 4048 4.576330 GAAGATCTTCCTCTTTCCCCAA 57.424 45.455 22.68 0.00 35.63 4.12
4303 4394 0.467290 TGTTTGGTTCAGTCCCAGGC 60.467 55.000 0.00 0.00 32.49 4.85
4322 4413 1.472376 GCGGAGGAGGAAACTGATGAG 60.472 57.143 0.00 0.00 44.43 2.90
4426 4517 2.430382 TATGCCCTAGTAAGCGCCGC 62.430 60.000 2.29 0.00 0.00 6.53
4534 4625 0.317160 TCGAACTGCCTGGTGTACTG 59.683 55.000 0.00 0.00 0.00 2.74
4554 4646 6.619801 ACTGACTCTTGTTTATTGTGTTCC 57.380 37.500 0.00 0.00 0.00 3.62
4568 4660 2.368875 TGTGTTCCCTGTTTCTCTCCTC 59.631 50.000 0.00 0.00 0.00 3.71
4625 4717 1.467734 CATGTGCTCTCTTTCTGTGGC 59.532 52.381 0.00 0.00 0.00 5.01
4626 4718 0.761187 TGTGCTCTCTTTCTGTGGCT 59.239 50.000 0.00 0.00 0.00 4.75
4627 4719 1.270518 TGTGCTCTCTTTCTGTGGCTC 60.271 52.381 0.00 0.00 0.00 4.70
4628 4720 1.051008 TGCTCTCTTTCTGTGGCTCA 58.949 50.000 0.00 0.00 0.00 4.26
4629 4721 1.627329 TGCTCTCTTTCTGTGGCTCAT 59.373 47.619 0.00 0.00 0.00 2.90
4630 4722 2.008329 GCTCTCTTTCTGTGGCTCATG 58.992 52.381 0.00 0.00 0.00 3.07
4631 4723 2.614987 GCTCTCTTTCTGTGGCTCATGT 60.615 50.000 0.00 0.00 0.00 3.21
4632 4724 3.368843 GCTCTCTTTCTGTGGCTCATGTA 60.369 47.826 0.00 0.00 0.00 2.29
4633 4725 4.180057 CTCTCTTTCTGTGGCTCATGTAC 58.820 47.826 0.00 0.00 0.00 2.90
4634 4726 3.834813 TCTCTTTCTGTGGCTCATGTACT 59.165 43.478 0.00 0.00 0.00 2.73
4928 5037 6.435277 TCTGACCCTTTTAGTAACGTCATAGT 59.565 38.462 0.00 0.00 30.46 2.12
4963 5072 5.359860 TCTGTCCAATATAGAAACGCTGAGA 59.640 40.000 0.00 0.00 0.00 3.27
4994 5103 4.273480 CGTGTCTGACCAAAGAAGAAATGT 59.727 41.667 5.17 0.00 0.00 2.71
5047 5156 3.777925 CCGAAGGCGCTGACGTTG 61.778 66.667 7.64 0.00 46.14 4.10
5048 5157 4.430423 CGAAGGCGCTGACGTTGC 62.430 66.667 7.64 0.00 42.83 4.17
5183 5292 2.339712 GCAGCAACGCCATGGTTT 59.660 55.556 14.67 4.13 0.00 3.27
5302 5411 1.854227 GCTAGCTATCTCGGCGTTTT 58.146 50.000 7.70 0.00 34.52 2.43
5384 5493 2.941891 TCACGTCGAGTTCATTTTGC 57.058 45.000 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.345854 ACCTAGTGAGACCTTCTTGTAGG 58.654 47.826 0.00 0.00 41.31 3.18
3 4 5.944599 TGTACCTAGTGAGACCTTCTTGTAG 59.055 44.000 0.00 0.00 0.00 2.74
4 5 5.884322 TGTACCTAGTGAGACCTTCTTGTA 58.116 41.667 0.00 0.00 0.00 2.41
5 6 4.737578 TGTACCTAGTGAGACCTTCTTGT 58.262 43.478 0.00 0.00 0.00 3.16
6 7 5.010933 TCTGTACCTAGTGAGACCTTCTTG 58.989 45.833 0.00 0.00 0.00 3.02
7 8 5.258216 TCTGTACCTAGTGAGACCTTCTT 57.742 43.478 0.00 0.00 0.00 2.52
8 9 4.931027 TCTGTACCTAGTGAGACCTTCT 57.069 45.455 0.00 0.00 0.00 2.85
9 10 5.680151 GCATTCTGTACCTAGTGAGACCTTC 60.680 48.000 0.00 0.00 0.00 3.46
10 11 4.160626 GCATTCTGTACCTAGTGAGACCTT 59.839 45.833 0.00 0.00 0.00 3.50
11 12 3.702045 GCATTCTGTACCTAGTGAGACCT 59.298 47.826 0.00 0.00 0.00 3.85
12 13 3.447586 TGCATTCTGTACCTAGTGAGACC 59.552 47.826 0.00 0.00 0.00 3.85
13 14 4.399618 TCTGCATTCTGTACCTAGTGAGAC 59.600 45.833 0.00 0.00 0.00 3.36
14 15 4.600062 TCTGCATTCTGTACCTAGTGAGA 58.400 43.478 0.00 0.00 0.00 3.27
15 16 4.991153 TCTGCATTCTGTACCTAGTGAG 57.009 45.455 0.00 0.00 0.00 3.51
16 17 4.442052 GCATCTGCATTCTGTACCTAGTGA 60.442 45.833 0.00 0.00 41.59 3.41
17 18 3.806521 GCATCTGCATTCTGTACCTAGTG 59.193 47.826 0.00 0.00 41.59 2.74
18 19 3.708631 AGCATCTGCATTCTGTACCTAGT 59.291 43.478 4.79 0.00 45.16 2.57
19 20 4.305769 GAGCATCTGCATTCTGTACCTAG 58.694 47.826 4.79 0.00 45.16 3.02
20 21 4.327982 GAGCATCTGCATTCTGTACCTA 57.672 45.455 4.79 0.00 45.16 3.08
21 22 3.191078 GAGCATCTGCATTCTGTACCT 57.809 47.619 4.79 0.00 45.16 3.08
69 70 9.802039 TGATCAAAACCTACTACCATTTTACTT 57.198 29.630 0.00 0.00 0.00 2.24
70 71 9.802039 TTGATCAAAACCTACTACCATTTTACT 57.198 29.630 5.45 0.00 0.00 2.24
76 77 9.927668 CAAAAATTGATCAAAACCTACTACCAT 57.072 29.630 13.09 0.00 0.00 3.55
77 78 8.919145 ACAAAAATTGATCAAAACCTACTACCA 58.081 29.630 13.09 0.00 0.00 3.25
101 102 8.739039 CCCAAATACACAAGAATTCAAGATACA 58.261 33.333 8.44 0.00 0.00 2.29
102 103 8.739972 ACCCAAATACACAAGAATTCAAGATAC 58.260 33.333 8.44 0.00 0.00 2.24
103 104 8.877864 ACCCAAATACACAAGAATTCAAGATA 57.122 30.769 8.44 0.00 0.00 1.98
104 105 7.781324 ACCCAAATACACAAGAATTCAAGAT 57.219 32.000 8.44 0.00 0.00 2.40
105 106 7.175990 GGTACCCAAATACACAAGAATTCAAGA 59.824 37.037 8.44 0.00 0.00 3.02
106 107 7.176690 AGGTACCCAAATACACAAGAATTCAAG 59.823 37.037 8.74 1.83 0.00 3.02
107 108 7.007723 AGGTACCCAAATACACAAGAATTCAA 58.992 34.615 8.74 0.00 0.00 2.69
108 109 6.432783 CAGGTACCCAAATACACAAGAATTCA 59.567 38.462 8.74 0.00 0.00 2.57
109 110 6.657541 TCAGGTACCCAAATACACAAGAATTC 59.342 38.462 8.74 0.00 0.00 2.17
110 111 6.548321 TCAGGTACCCAAATACACAAGAATT 58.452 36.000 8.74 0.00 0.00 2.17
111 112 6.134535 TCAGGTACCCAAATACACAAGAAT 57.865 37.500 8.74 0.00 0.00 2.40
112 113 5.570205 TCAGGTACCCAAATACACAAGAA 57.430 39.130 8.74 0.00 0.00 2.52
113 114 5.570205 TTCAGGTACCCAAATACACAAGA 57.430 39.130 8.74 0.00 0.00 3.02
114 115 5.768164 AGTTTCAGGTACCCAAATACACAAG 59.232 40.000 8.74 0.00 0.00 3.16
115 116 5.697067 AGTTTCAGGTACCCAAATACACAA 58.303 37.500 8.74 0.00 0.00 3.33
116 117 5.163184 TGAGTTTCAGGTACCCAAATACACA 60.163 40.000 8.74 3.31 0.00 3.72
117 118 5.310451 TGAGTTTCAGGTACCCAAATACAC 58.690 41.667 8.74 0.00 0.00 2.90
118 119 5.556915 CTGAGTTTCAGGTACCCAAATACA 58.443 41.667 8.74 10.80 40.71 2.29
119 120 6.002082 AACTGAGTTTCAGGTACCCAAATAC 58.998 40.000 8.74 7.19 43.79 1.89
120 121 6.195600 AACTGAGTTTCAGGTACCCAAATA 57.804 37.500 8.74 0.00 43.79 1.40
121 122 5.061721 AACTGAGTTTCAGGTACCCAAAT 57.938 39.130 8.74 0.00 43.79 2.32
122 123 4.513406 AACTGAGTTTCAGGTACCCAAA 57.487 40.909 8.74 5.36 43.79 3.28
123 124 4.513406 AAACTGAGTTTCAGGTACCCAA 57.487 40.909 8.74 0.00 45.11 4.12
124 125 4.513406 AAAACTGAGTTTCAGGTACCCA 57.487 40.909 11.44 0.00 45.11 4.51
125 126 6.293698 TCTAAAAACTGAGTTTCAGGTACCC 58.706 40.000 11.44 0.00 45.11 3.69
126 127 7.573283 GCATCTAAAAACTGAGTTTCAGGTACC 60.573 40.741 11.44 2.73 45.11 3.34
127 128 7.041372 TGCATCTAAAAACTGAGTTTCAGGTAC 60.041 37.037 11.44 4.00 45.11 3.34
128 129 6.995686 TGCATCTAAAAACTGAGTTTCAGGTA 59.004 34.615 11.44 1.57 45.11 3.08
132 133 7.333528 AGTTGCATCTAAAAACTGAGTTTCA 57.666 32.000 11.44 0.22 34.43 2.69
140 141 6.058183 AGACTGACAGTTGCATCTAAAAACT 58.942 36.000 10.01 0.00 34.52 2.66
141 142 6.305693 AGACTGACAGTTGCATCTAAAAAC 57.694 37.500 10.01 0.00 0.00 2.43
142 143 6.989759 TGTAGACTGACAGTTGCATCTAAAAA 59.010 34.615 10.01 0.00 0.00 1.94
143 144 6.521162 TGTAGACTGACAGTTGCATCTAAAA 58.479 36.000 10.01 0.00 0.00 1.52
144 145 6.096673 TGTAGACTGACAGTTGCATCTAAA 57.903 37.500 10.01 0.00 0.00 1.85
145 146 5.722021 TGTAGACTGACAGTTGCATCTAA 57.278 39.130 10.01 0.00 0.00 2.10
146 147 5.722021 TTGTAGACTGACAGTTGCATCTA 57.278 39.130 10.01 3.30 0.00 1.98
147 148 4.607293 TTGTAGACTGACAGTTGCATCT 57.393 40.909 10.01 4.31 0.00 2.90
148 149 5.869753 AATTGTAGACTGACAGTTGCATC 57.130 39.130 10.01 0.00 29.08 3.91
149 150 5.532406 ACAAATTGTAGACTGACAGTTGCAT 59.468 36.000 10.01 0.00 33.04 3.96
150 151 4.881273 ACAAATTGTAGACTGACAGTTGCA 59.119 37.500 10.01 6.96 33.04 4.08
151 152 5.207768 CACAAATTGTAGACTGACAGTTGC 58.792 41.667 10.01 4.50 33.04 4.17
152 153 6.363577 ACACAAATTGTAGACTGACAGTTG 57.636 37.500 10.01 3.89 36.32 3.16
153 154 7.254795 GCTTACACAAATTGTAGACTGACAGTT 60.255 37.037 10.01 2.76 41.86 3.16
154 155 6.202954 GCTTACACAAATTGTAGACTGACAGT 59.797 38.462 8.12 8.12 41.86 3.55
155 156 6.347725 GGCTTACACAAATTGTAGACTGACAG 60.348 42.308 0.00 0.00 41.86 3.51
156 157 5.468746 GGCTTACACAAATTGTAGACTGACA 59.531 40.000 0.00 0.00 41.86 3.58
157 158 5.468746 TGGCTTACACAAATTGTAGACTGAC 59.531 40.000 0.00 0.00 41.86 3.51
158 159 5.616270 TGGCTTACACAAATTGTAGACTGA 58.384 37.500 0.00 0.00 41.86 3.41
159 160 5.940192 TGGCTTACACAAATTGTAGACTG 57.060 39.130 0.00 0.00 41.86 3.51
173 174 4.759693 CCATGTACTTTCTTGTGGCTTACA 59.240 41.667 0.00 0.00 37.56 2.41
174 175 4.760204 ACCATGTACTTTCTTGTGGCTTAC 59.240 41.667 0.00 0.00 0.00 2.34
175 176 4.759693 CACCATGTACTTTCTTGTGGCTTA 59.240 41.667 0.00 0.00 0.00 3.09
176 177 3.569701 CACCATGTACTTTCTTGTGGCTT 59.430 43.478 0.00 0.00 0.00 4.35
177 178 3.149196 CACCATGTACTTTCTTGTGGCT 58.851 45.455 0.00 0.00 0.00 4.75
178 179 2.351738 GCACCATGTACTTTCTTGTGGC 60.352 50.000 0.00 0.00 0.00 5.01
179 180 2.884012 TGCACCATGTACTTTCTTGTGG 59.116 45.455 0.00 0.00 0.00 4.17
180 181 4.566545 TTGCACCATGTACTTTCTTGTG 57.433 40.909 0.00 0.00 0.00 3.33
181 182 5.789643 ATTTGCACCATGTACTTTCTTGT 57.210 34.783 0.00 0.00 0.00 3.16
182 183 7.481275 AAAATTTGCACCATGTACTTTCTTG 57.519 32.000 0.00 0.00 0.00 3.02
243 244 9.996554 TGTTGACATCTAATGTAGAAAAGAGAA 57.003 29.630 0.00 0.00 45.03 2.87
244 245 9.996554 TTGTTGACATCTAATGTAGAAAAGAGA 57.003 29.630 0.00 0.00 45.03 3.10
246 247 9.996554 TCTTGTTGACATCTAATGTAGAAAAGA 57.003 29.630 0.00 0.00 45.03 2.52
251 252 9.534565 GCTAATCTTGTTGACATCTAATGTAGA 57.465 33.333 0.00 0.00 45.03 2.59
252 253 8.483218 CGCTAATCTTGTTGACATCTAATGTAG 58.517 37.037 0.00 0.00 45.03 2.74
253 254 7.438160 CCGCTAATCTTGTTGACATCTAATGTA 59.562 37.037 0.00 0.00 45.03 2.29
255 256 6.293081 CCCGCTAATCTTGTTGACATCTAATG 60.293 42.308 0.00 0.00 0.00 1.90
256 257 5.760253 CCCGCTAATCTTGTTGACATCTAAT 59.240 40.000 0.00 0.00 0.00 1.73
257 258 5.116180 CCCGCTAATCTTGTTGACATCTAA 58.884 41.667 0.00 0.00 0.00 2.10
258 259 4.693283 CCCGCTAATCTTGTTGACATCTA 58.307 43.478 0.00 0.00 0.00 1.98
259 260 3.535561 CCCGCTAATCTTGTTGACATCT 58.464 45.455 0.00 0.00 0.00 2.90
260 261 2.032178 GCCCGCTAATCTTGTTGACATC 59.968 50.000 0.00 0.00 0.00 3.06
261 262 2.017049 GCCCGCTAATCTTGTTGACAT 58.983 47.619 0.00 0.00 0.00 3.06
262 263 1.448985 GCCCGCTAATCTTGTTGACA 58.551 50.000 0.00 0.00 0.00 3.58
263 264 0.373716 CGCCCGCTAATCTTGTTGAC 59.626 55.000 0.00 0.00 0.00 3.18
264 265 1.366111 GCGCCCGCTAATCTTGTTGA 61.366 55.000 5.27 0.00 38.26 3.18
265 266 1.062525 GCGCCCGCTAATCTTGTTG 59.937 57.895 5.27 0.00 38.26 3.33
266 267 1.369091 CTGCGCCCGCTAATCTTGTT 61.369 55.000 14.13 0.00 42.51 2.83
267 268 1.815421 CTGCGCCCGCTAATCTTGT 60.815 57.895 14.13 0.00 42.51 3.16
268 269 3.017323 CTGCGCCCGCTAATCTTG 58.983 61.111 14.13 0.00 42.51 3.02
269 270 2.897350 GCTGCGCCCGCTAATCTT 60.897 61.111 14.13 0.00 42.51 2.40
270 271 3.680620 TTGCTGCGCCCGCTAATCT 62.681 57.895 17.83 0.00 42.51 2.40
271 272 3.202001 TTGCTGCGCCCGCTAATC 61.202 61.111 17.83 1.42 42.51 1.75
272 273 3.508840 GTTGCTGCGCCCGCTAAT 61.509 61.111 17.83 0.00 42.51 1.73
285 286 2.646799 ATTATCAAGGCGCGCGTTGC 62.647 55.000 44.46 25.81 40.38 4.17
286 287 0.654472 GATTATCAAGGCGCGCGTTG 60.654 55.000 44.02 44.02 41.49 4.10
287 288 0.810031 AGATTATCAAGGCGCGCGTT 60.810 50.000 31.17 31.17 0.00 4.84
288 289 0.031585 TAGATTATCAAGGCGCGCGT 59.968 50.000 32.35 24.51 0.00 6.01
289 290 0.710567 CTAGATTATCAAGGCGCGCG 59.289 55.000 28.44 28.44 0.00 6.86
290 291 1.457303 CACTAGATTATCAAGGCGCGC 59.543 52.381 25.94 25.94 0.00 6.86
291 292 2.743938 ACACTAGATTATCAAGGCGCG 58.256 47.619 0.00 0.00 0.00 6.86
292 293 4.372656 AGAACACTAGATTATCAAGGCGC 58.627 43.478 0.00 0.00 0.00 6.53
293 294 4.985409 GGAGAACACTAGATTATCAAGGCG 59.015 45.833 0.00 0.00 0.00 5.52
294 295 4.985409 CGGAGAACACTAGATTATCAAGGC 59.015 45.833 0.00 0.00 0.00 4.35
295 296 6.150396 ACGGAGAACACTAGATTATCAAGG 57.850 41.667 0.00 0.00 0.00 3.61
298 299 9.734984 TCATATACGGAGAACACTAGATTATCA 57.265 33.333 0.00 0.00 0.00 2.15
301 302 9.788889 TCTTCATATACGGAGAACACTAGATTA 57.211 33.333 0.00 0.00 0.00 1.75
302 303 8.693120 TCTTCATATACGGAGAACACTAGATT 57.307 34.615 0.00 0.00 0.00 2.40
303 304 8.735315 CATCTTCATATACGGAGAACACTAGAT 58.265 37.037 0.00 0.00 0.00 1.98
304 305 7.308649 GCATCTTCATATACGGAGAACACTAGA 60.309 40.741 0.00 0.00 0.00 2.43
305 306 6.804295 GCATCTTCATATACGGAGAACACTAG 59.196 42.308 0.00 0.00 0.00 2.57
306 307 6.490381 AGCATCTTCATATACGGAGAACACTA 59.510 38.462 0.00 0.00 0.00 2.74
307 308 5.303078 AGCATCTTCATATACGGAGAACACT 59.697 40.000 0.00 0.00 0.00 3.55
308 309 5.533482 AGCATCTTCATATACGGAGAACAC 58.467 41.667 0.00 0.00 0.00 3.32
309 310 5.773575 GAGCATCTTCATATACGGAGAACA 58.226 41.667 0.00 0.00 0.00 3.18
371 379 5.221303 TCGGAGAGGGGGATTCTATTTTTA 58.779 41.667 0.00 0.00 0.00 1.52
374 382 3.346146 TCGGAGAGGGGGATTCTATTT 57.654 47.619 0.00 0.00 0.00 1.40
392 400 7.617041 TGAGTGGTATAGATGATACATCTCG 57.383 40.000 15.95 0.00 42.11 4.04
429 472 2.106683 CGTCTTCGGATTGTGGCCC 61.107 63.158 0.00 0.00 0.00 5.80
463 506 1.247567 GGATCTGTTTGTGTGGTGGG 58.752 55.000 0.00 0.00 0.00 4.61
556 603 1.456705 AATGGCGGTGTGTGGGTTT 60.457 52.632 0.00 0.00 0.00 3.27
964 1017 0.466124 AGGAAAGTCTCCCGCTATGC 59.534 55.000 0.00 0.00 46.81 3.14
967 1020 1.975680 ACAAAGGAAAGTCTCCCGCTA 59.024 47.619 0.00 0.00 46.81 4.26
981 1034 4.566004 TCATCTCCAACGTCTTACAAAGG 58.434 43.478 0.00 0.00 0.00 3.11
1104 1157 2.598394 GGCTCACCAGGCAAGCAA 60.598 61.111 14.17 0.00 44.88 3.91
1196 1249 2.673368 GCATCTAACAGACCCGAAACAG 59.327 50.000 0.00 0.00 0.00 3.16
1250 1304 7.972277 ACATCATAAGAAAAAGTTGCATAGCAG 59.028 33.333 0.00 0.00 40.61 4.24
1425 1481 7.805071 AGAAATTACATCTGTTCAAGCGAAAAG 59.195 33.333 0.00 0.00 37.77 2.27
1504 1562 7.128728 TCCAGATCCCTAAAATCCTCAAACATA 59.871 37.037 0.00 0.00 0.00 2.29
1534 1592 5.757320 TGCATAGCAGCTCTCTAATTCTTTC 59.243 40.000 0.00 0.00 33.32 2.62
1535 1593 5.526846 GTGCATAGCAGCTCTCTAATTCTTT 59.473 40.000 0.00 0.00 40.08 2.52
1536 1594 5.055812 GTGCATAGCAGCTCTCTAATTCTT 58.944 41.667 0.00 0.00 40.08 2.52
1537 1595 4.100653 TGTGCATAGCAGCTCTCTAATTCT 59.899 41.667 0.00 0.00 40.08 2.40
1538 1596 4.210955 GTGTGCATAGCAGCTCTCTAATTC 59.789 45.833 0.00 0.00 40.08 2.17
1539 1597 4.125703 GTGTGCATAGCAGCTCTCTAATT 58.874 43.478 0.00 0.00 40.08 1.40
1540 1598 3.726607 GTGTGCATAGCAGCTCTCTAAT 58.273 45.455 0.00 0.00 40.08 1.73
1541 1599 2.480244 CGTGTGCATAGCAGCTCTCTAA 60.480 50.000 0.00 0.00 40.08 2.10
1542 1600 1.066152 CGTGTGCATAGCAGCTCTCTA 59.934 52.381 0.00 0.00 40.08 2.43
1543 1601 0.179116 CGTGTGCATAGCAGCTCTCT 60.179 55.000 0.00 0.00 40.08 3.10
1544 1602 0.179127 TCGTGTGCATAGCAGCTCTC 60.179 55.000 0.00 0.00 40.08 3.20
1545 1603 0.459237 GTCGTGTGCATAGCAGCTCT 60.459 55.000 0.00 0.00 40.08 4.09
1546 1604 1.746727 CGTCGTGTGCATAGCAGCTC 61.747 60.000 0.00 0.00 40.08 4.09
1547 1605 1.807165 CGTCGTGTGCATAGCAGCT 60.807 57.895 0.00 0.00 40.08 4.24
1548 1606 2.697425 CGTCGTGTGCATAGCAGC 59.303 61.111 0.00 0.00 40.08 5.25
1549 1607 1.807165 AGCGTCGTGTGCATAGCAG 60.807 57.895 0.00 0.00 40.08 4.24
1550 1608 2.094066 CAGCGTCGTGTGCATAGCA 61.094 57.895 0.00 0.00 35.60 3.49
1551 1609 2.014093 GACAGCGTCGTGTGCATAGC 62.014 60.000 5.40 0.00 33.85 2.97
1552 1610 1.413767 GGACAGCGTCGTGTGCATAG 61.414 60.000 12.17 0.00 38.57 2.23
1553 1611 1.445410 GGACAGCGTCGTGTGCATA 60.445 57.895 12.17 0.00 38.57 3.14
1554 1612 2.738521 GGACAGCGTCGTGTGCAT 60.739 61.111 12.17 0.00 38.57 3.96
1562 1620 4.814294 AATCGGCCGGACAGCGTC 62.814 66.667 27.83 0.79 0.00 5.19
1563 1621 4.388499 AAATCGGCCGGACAGCGT 62.388 61.111 27.83 0.51 0.00 5.07
1564 1622 3.864686 CAAATCGGCCGGACAGCG 61.865 66.667 27.83 5.51 0.00 5.18
1565 1623 2.746277 ACAAATCGGCCGGACAGC 60.746 61.111 27.83 0.00 0.00 4.40
1566 1624 3.039202 GCACAAATCGGCCGGACAG 62.039 63.158 27.83 15.79 0.00 3.51
1567 1625 3.053291 GCACAAATCGGCCGGACA 61.053 61.111 27.83 6.34 0.00 4.02
1568 1626 3.053291 TGCACAAATCGGCCGGAC 61.053 61.111 27.83 0.00 0.00 4.79
1569 1627 3.053291 GTGCACAAATCGGCCGGA 61.053 61.111 27.83 12.89 0.00 5.14
1570 1628 4.459331 CGTGCACAAATCGGCCGG 62.459 66.667 27.83 11.94 0.00 6.13
1571 1629 3.418913 TCGTGCACAAATCGGCCG 61.419 61.111 22.12 22.12 0.00 6.13
1572 1630 1.922135 ATGTCGTGCACAAATCGGCC 61.922 55.000 18.64 0.00 38.97 6.13
1573 1631 0.521242 GATGTCGTGCACAAATCGGC 60.521 55.000 18.64 4.26 38.97 5.54
1574 1632 0.795698 TGATGTCGTGCACAAATCGG 59.204 50.000 18.64 0.00 38.97 4.18
1575 1633 1.194322 TGTGATGTCGTGCACAAATCG 59.806 47.619 18.64 1.94 41.61 3.34
1576 1634 2.967459 TGTGATGTCGTGCACAAATC 57.033 45.000 18.64 15.67 41.61 2.17
1577 1635 4.635324 TGATATGTGATGTCGTGCACAAAT 59.365 37.500 18.64 6.63 46.74 2.32
1578 1636 3.999663 TGATATGTGATGTCGTGCACAAA 59.000 39.130 18.64 0.46 46.74 2.83
1579 1637 3.594134 TGATATGTGATGTCGTGCACAA 58.406 40.909 18.64 0.00 46.74 3.33
1581 1639 2.033407 GCTGATATGTGATGTCGTGCAC 60.033 50.000 6.82 6.82 35.63 4.57
1582 1640 2.204237 GCTGATATGTGATGTCGTGCA 58.796 47.619 0.00 0.00 0.00 4.57
1583 1641 1.528586 GGCTGATATGTGATGTCGTGC 59.471 52.381 0.00 0.00 0.00 5.34
1584 1642 2.138320 GGGCTGATATGTGATGTCGTG 58.862 52.381 0.00 0.00 0.00 4.35
1585 1643 1.269778 CGGGCTGATATGTGATGTCGT 60.270 52.381 0.00 0.00 0.00 4.34
1586 1644 1.269778 ACGGGCTGATATGTGATGTCG 60.270 52.381 0.00 0.00 0.00 4.35
1587 1645 2.408050 GACGGGCTGATATGTGATGTC 58.592 52.381 0.00 0.00 0.00 3.06
1588 1646 1.070758 GGACGGGCTGATATGTGATGT 59.929 52.381 0.00 0.00 0.00 3.06
1589 1647 1.070601 TGGACGGGCTGATATGTGATG 59.929 52.381 0.00 0.00 0.00 3.07
1590 1648 1.423584 TGGACGGGCTGATATGTGAT 58.576 50.000 0.00 0.00 0.00 3.06
1591 1649 1.070601 CATGGACGGGCTGATATGTGA 59.929 52.381 0.00 0.00 0.00 3.58
1592 1650 1.516161 CATGGACGGGCTGATATGTG 58.484 55.000 0.00 0.00 0.00 3.21
1593 1651 0.250467 GCATGGACGGGCTGATATGT 60.250 55.000 0.00 0.00 0.00 2.29
1594 1652 0.035881 AGCATGGACGGGCTGATATG 59.964 55.000 0.00 2.68 39.30 1.78
1595 1653 0.767375 AAGCATGGACGGGCTGATAT 59.233 50.000 0.00 0.00 40.93 1.63
1596 1654 1.070134 GTAAGCATGGACGGGCTGATA 59.930 52.381 0.00 0.00 40.93 2.15
1597 1655 0.179045 GTAAGCATGGACGGGCTGAT 60.179 55.000 0.00 0.00 40.93 2.90
1598 1656 1.220749 GTAAGCATGGACGGGCTGA 59.779 57.895 0.00 0.00 40.93 4.26
1599 1657 1.819632 GGTAAGCATGGACGGGCTG 60.820 63.158 0.00 0.00 40.93 4.85
1600 1658 1.635817 ATGGTAAGCATGGACGGGCT 61.636 55.000 0.00 0.00 43.46 5.19
1601 1659 1.152963 ATGGTAAGCATGGACGGGC 60.153 57.895 0.00 0.00 0.00 6.13
1602 1660 0.535102 GGATGGTAAGCATGGACGGG 60.535 60.000 0.00 0.00 0.00 5.28
1603 1661 0.180171 TGGATGGTAAGCATGGACGG 59.820 55.000 0.00 0.00 0.00 4.79
1604 1662 1.586422 CTGGATGGTAAGCATGGACG 58.414 55.000 0.00 0.00 0.00 4.79
1605 1663 1.312815 GCTGGATGGTAAGCATGGAC 58.687 55.000 0.00 0.00 39.31 4.02
1606 1664 0.179048 CGCTGGATGGTAAGCATGGA 60.179 55.000 0.00 0.00 39.47 3.41
1607 1665 1.789078 GCGCTGGATGGTAAGCATGG 61.789 60.000 0.00 0.00 39.47 3.66
1608 1666 1.096967 TGCGCTGGATGGTAAGCATG 61.097 55.000 9.73 0.00 39.47 4.06
1609 1667 0.179009 ATGCGCTGGATGGTAAGCAT 60.179 50.000 9.73 0.00 39.47 3.79
1610 1668 0.394216 AATGCGCTGGATGGTAAGCA 60.394 50.000 9.73 0.00 39.47 3.91
1611 1669 0.740737 AAATGCGCTGGATGGTAAGC 59.259 50.000 9.73 0.00 36.03 3.09
1612 1670 2.016318 TCAAATGCGCTGGATGGTAAG 58.984 47.619 9.73 0.00 0.00 2.34
1613 1671 2.016318 CTCAAATGCGCTGGATGGTAA 58.984 47.619 9.73 0.00 0.00 2.85
1614 1672 1.667236 CTCAAATGCGCTGGATGGTA 58.333 50.000 9.73 0.00 0.00 3.25
1615 1673 1.660560 GCTCAAATGCGCTGGATGGT 61.661 55.000 9.73 0.00 0.00 3.55
1616 1674 1.065273 GCTCAAATGCGCTGGATGG 59.935 57.895 9.73 0.00 0.00 3.51
1617 1675 4.704007 GCTCAAATGCGCTGGATG 57.296 55.556 9.73 2.63 0.00 3.51
1625 1683 0.526954 CAATCCAGCCGCTCAAATGC 60.527 55.000 0.00 0.00 0.00 3.56
1626 1684 0.526954 GCAATCCAGCCGCTCAAATG 60.527 55.000 0.00 0.00 0.00 2.32
1627 1685 1.811860 GCAATCCAGCCGCTCAAAT 59.188 52.632 0.00 0.00 0.00 2.32
1628 1686 2.689785 CGCAATCCAGCCGCTCAAA 61.690 57.895 0.00 0.00 0.00 2.69
1629 1687 3.126879 CGCAATCCAGCCGCTCAA 61.127 61.111 0.00 0.00 0.00 3.02
1633 1691 4.619140 GATGCGCAATCCAGCCGC 62.619 66.667 17.11 0.00 35.60 6.53
1634 1692 4.303603 CGATGCGCAATCCAGCCG 62.304 66.667 17.11 5.84 30.80 5.52
1635 1693 3.204827 ACGATGCGCAATCCAGCC 61.205 61.111 17.11 0.00 30.80 4.85
1636 1694 2.023741 CACGATGCGCAATCCAGC 59.976 61.111 17.11 0.00 30.80 4.85
1637 1695 1.349627 GACACGATGCGCAATCCAG 59.650 57.895 17.11 6.42 30.80 3.86
1638 1696 2.451990 CGACACGATGCGCAATCCA 61.452 57.895 17.11 0.00 30.80 3.41
1639 1697 2.321060 CGACACGATGCGCAATCC 59.679 61.111 17.11 5.90 30.80 3.01
1648 1706 2.178521 GGACGACAGCGACACGAT 59.821 61.111 0.00 0.00 41.64 3.73
1649 1707 4.379143 CGGACGACAGCGACACGA 62.379 66.667 0.00 0.00 41.64 4.35
1667 1725 4.134187 GTGTGGACGACGCATGCG 62.134 66.667 36.79 36.79 42.40 4.73
1668 1726 3.015293 CTGTGTGGACGACGCATGC 62.015 63.158 7.91 7.91 44.13 4.06
1669 1727 0.388006 TACTGTGTGGACGACGCATG 60.388 55.000 4.22 2.46 44.13 4.06
1670 1728 0.315886 TTACTGTGTGGACGACGCAT 59.684 50.000 4.22 0.00 44.13 4.73
1671 1729 0.315886 ATTACTGTGTGGACGACGCA 59.684 50.000 3.74 3.74 42.96 5.24
1672 1730 1.425412 AATTACTGTGTGGACGACGC 58.575 50.000 0.00 0.00 35.45 5.19
1673 1731 2.090041 CGAAATTACTGTGTGGACGACG 59.910 50.000 0.00 0.00 0.00 5.12
1674 1732 3.311106 TCGAAATTACTGTGTGGACGAC 58.689 45.455 0.00 0.00 0.00 4.34
1675 1733 3.646611 TCGAAATTACTGTGTGGACGA 57.353 42.857 0.00 0.00 0.00 4.20
1676 1734 4.446385 TCTTTCGAAATTACTGTGTGGACG 59.554 41.667 11.70 0.00 0.00 4.79
1677 1735 5.917541 TCTTTCGAAATTACTGTGTGGAC 57.082 39.130 11.70 0.00 0.00 4.02
1678 1736 7.504924 AATTCTTTCGAAATTACTGTGTGGA 57.495 32.000 11.70 0.00 31.91 4.02
1802 1860 1.029681 ACAGACGGAAAAACCTTGGC 58.970 50.000 0.00 0.00 36.31 4.52
1835 1894 1.317613 ACTGCTCGGAAAATGCAACA 58.682 45.000 0.00 0.00 36.22 3.33
1982 2041 2.755836 TCAGACTTCTTGCGCAAAAC 57.244 45.000 25.01 12.91 0.00 2.43
2623 2682 9.613428 TCCAAAACTCTAATTGACATACTATGG 57.387 33.333 1.11 0.00 33.60 2.74
2853 2936 1.251251 ACTTGGCAGAGTCAAATGGC 58.749 50.000 0.00 0.00 42.01 4.40
3061 3144 6.815089 TGTCAAAAACAGGTATCAGCAATTT 58.185 32.000 0.00 0.00 32.81 1.82
3148 3231 0.615331 TGGTCAATCCTCTGAGGCAC 59.385 55.000 19.08 11.61 34.61 5.01
3357 3440 2.093658 AGTCCAGTAATACTGTTGCCCG 60.094 50.000 18.00 3.18 44.50 6.13
3451 3534 5.995282 TGATTACTACAAAATCCATAGCCCG 59.005 40.000 0.00 0.00 33.28 6.13
3908 3999 3.439476 AGAGTCTGAAATGAGCACATTGC 59.561 43.478 10.25 9.00 44.67 3.56
3957 4048 9.200817 AGGCAACCATGTAATAATGATTTTACT 57.799 29.630 0.00 0.00 37.17 2.24
4042 4133 5.648526 TGCATTTTGGAAATGGATTGGATTG 59.351 36.000 13.46 0.00 0.00 2.67
4303 4394 1.137872 CCTCATCAGTTTCCTCCTCCG 59.862 57.143 0.00 0.00 0.00 4.63
4342 4433 2.115910 CAGCTGAAGGGCCAACCA 59.884 61.111 8.42 0.00 43.89 3.67
4426 4517 2.098280 AGATGACGACGATGAAGACCTG 59.902 50.000 0.00 0.00 0.00 4.00
4534 4625 5.531287 ACAGGGAACACAATAAACAAGAGTC 59.469 40.000 0.00 0.00 0.00 3.36
4625 4717 5.106791 CCAAGCAACAGAAAGAGTACATGAG 60.107 44.000 0.00 0.00 0.00 2.90
4626 4718 4.756642 CCAAGCAACAGAAAGAGTACATGA 59.243 41.667 0.00 0.00 0.00 3.07
4627 4719 4.614535 GCCAAGCAACAGAAAGAGTACATG 60.615 45.833 0.00 0.00 0.00 3.21
4628 4720 3.503748 GCCAAGCAACAGAAAGAGTACAT 59.496 43.478 0.00 0.00 0.00 2.29
4629 4721 2.878406 GCCAAGCAACAGAAAGAGTACA 59.122 45.455 0.00 0.00 0.00 2.90
4630 4722 2.878406 TGCCAAGCAACAGAAAGAGTAC 59.122 45.455 0.00 0.00 34.76 2.73
4631 4723 2.878406 GTGCCAAGCAACAGAAAGAGTA 59.122 45.455 0.00 0.00 41.47 2.59
4632 4724 1.678101 GTGCCAAGCAACAGAAAGAGT 59.322 47.619 0.00 0.00 41.47 3.24
4633 4725 1.000938 GGTGCCAAGCAACAGAAAGAG 60.001 52.381 0.00 0.00 46.68 2.85
4634 4726 1.032014 GGTGCCAAGCAACAGAAAGA 58.968 50.000 0.00 0.00 46.68 2.52
4959 5068 2.614520 GTCAGACACGCTAGCTATCTCA 59.385 50.000 13.93 0.00 0.00 3.27
4963 5072 1.763968 TGGTCAGACACGCTAGCTAT 58.236 50.000 13.93 0.00 0.00 2.97
4994 5103 1.310216 TGCAACGCTAGCTACCTCGA 61.310 55.000 13.93 0.00 0.00 4.04
5047 5156 2.194212 CATGATGGGCTGCTGAGGC 61.194 63.158 0.00 0.00 44.21 4.70
5048 5157 1.528542 CCATGATGGGCTGCTGAGG 60.529 63.158 2.79 0.00 32.67 3.86
5049 5158 0.106868 TTCCATGATGGGCTGCTGAG 60.107 55.000 12.26 0.00 38.32 3.35
5050 5159 0.332293 TTTCCATGATGGGCTGCTGA 59.668 50.000 12.26 0.00 38.32 4.26
5051 5160 0.458669 GTTTCCATGATGGGCTGCTG 59.541 55.000 12.26 0.00 38.32 4.41
5052 5161 1.033746 CGTTTCCATGATGGGCTGCT 61.034 55.000 12.26 0.00 38.32 4.24
5140 5249 3.431673 TTCATGTGCATGTGGAACCTA 57.568 42.857 11.38 0.00 39.72 3.08
5183 5292 2.165437 GGCCATCATAGAAACGCCAAAA 59.835 45.455 0.00 0.00 36.38 2.44
5302 5411 2.667171 GCGGCGTTTATGCTCAAAGAAA 60.667 45.455 9.37 0.00 34.52 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.