Multiple sequence alignment - TraesCS5A01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G107600 chr5A 100.000 8056 0 0 1 8056 184235805 184227750 0.000000e+00 14877.0
1 TraesCS5A01G107600 chr5A 88.362 464 29 6 7146 7588 602196942 602197401 1.190000e-147 534.0
2 TraesCS5A01G107600 chr5A 88.089 361 33 10 7259 7615 42163063 42162709 3.480000e-113 420.0
3 TraesCS5A01G107600 chr5A 91.765 85 5 2 7050 7132 572049357 572049273 5.110000e-22 117.0
4 TraesCS5A01G107600 chr5A 92.000 75 6 0 7058 7132 458199198 458199272 1.110000e-18 106.0
5 TraesCS5A01G107600 chr5A 78.030 132 17 5 4096 4226 505027557 505027437 1.120000e-08 73.1
6 TraesCS5A01G107600 chr5D 97.969 2019 40 1 5123 7140 138471080 138473098 0.000000e+00 3500.0
7 TraesCS5A01G107600 chr5D 96.724 1465 30 7 1023 2480 138467490 138468943 0.000000e+00 2423.0
8 TraesCS5A01G107600 chr5D 97.942 1215 15 7 3758 4962 138469868 138471082 0.000000e+00 2097.0
9 TraesCS5A01G107600 chr5D 97.780 946 13 1 2518 3463 138468931 138469868 0.000000e+00 1624.0
10 TraesCS5A01G107600 chr5D 81.744 975 83 41 7130 8056 532007550 532006623 0.000000e+00 726.0
11 TraesCS5A01G107600 chr5D 80.128 468 70 19 7149 7615 554615035 554615480 2.170000e-85 327.0
12 TraesCS5A01G107600 chr5D 89.216 102 6 3 798 894 138467403 138467504 1.100000e-23 122.0
13 TraesCS5A01G107600 chr5D 88.506 87 6 2 7050 7132 535136260 535136174 1.430000e-17 102.0
14 TraesCS5A01G107600 chr5D 97.917 48 1 0 2517 2564 553674774 553674727 5.180000e-12 84.2
15 TraesCS5A01G107600 chr5D 94.118 51 3 0 2514 2564 46048662 46048712 2.410000e-10 78.7
16 TraesCS5A01G107600 chr5D 85.000 80 9 3 2417 2495 553674833 553674756 2.410000e-10 78.7
17 TraesCS5A01G107600 chr5B 91.152 2509 124 34 1023 3462 155712336 155714815 0.000000e+00 3314.0
18 TraesCS5A01G107600 chr5B 96.141 1866 68 3 5123 6988 155715934 155717795 0.000000e+00 3044.0
19 TraesCS5A01G107600 chr5B 93.012 1059 38 13 3865 4919 155714840 155715866 0.000000e+00 1513.0
20 TraesCS5A01G107600 chr5B 90.256 195 16 3 4936 5129 24016246 24016054 1.340000e-62 252.0
21 TraesCS5A01G107600 chr5B 83.019 159 17 5 4097 4255 225521542 225521690 1.410000e-27 135.0
22 TraesCS5A01G107600 chr5B 81.609 174 20 7 4086 4258 591710068 591709906 5.070000e-27 134.0
23 TraesCS5A01G107600 chr5B 85.586 111 13 3 3773 3883 617137594 617137701 6.610000e-21 113.0
24 TraesCS5A01G107600 chr5B 84.259 108 5 5 799 894 155712243 155712350 2.390000e-15 95.3
25 TraesCS5A01G107600 chr5B 88.406 69 7 1 2426 2493 47047340 47047272 1.860000e-11 82.4
26 TraesCS5A01G107600 chr5B 88.406 69 7 1 2426 2493 47081721 47081653 1.860000e-11 82.4
27 TraesCS5A01G107600 chr3A 97.616 797 17 2 1 797 23266974 23267768 0.000000e+00 1365.0
28 TraesCS5A01G107600 chr3A 87.660 940 62 16 7141 8056 185444788 185443879 0.000000e+00 1044.0
29 TraesCS5A01G107600 chr3A 87.891 479 30 8 7146 7601 712590177 712590650 9.200000e-149 538.0
30 TraesCS5A01G107600 chr3A 85.828 501 42 10 7141 7617 577064534 577064039 9.330000e-139 505.0
31 TraesCS5A01G107600 chr3A 86.430 479 40 16 7131 7588 20656883 20656409 1.210000e-137 501.0
32 TraesCS5A01G107600 chr3A 84.630 527 49 24 7141 7641 80486543 80486023 5.620000e-136 496.0
33 TraesCS5A01G107600 chr3A 92.857 182 11 2 4955 5135 89152753 89152573 6.200000e-66 263.0
34 TraesCS5A01G107600 chr3A 94.048 84 5 0 3783 3866 200126813 200126730 2.360000e-25 128.0
35 TraesCS5A01G107600 chr3A 94.737 57 3 0 2365 2421 482404554 482404498 1.110000e-13 89.8
36 TraesCS5A01G107600 chr7A 97.491 797 18 2 1 797 13137507 13136713 0.000000e+00 1360.0
37 TraesCS5A01G107600 chr7A 97.118 798 22 1 1 798 121912003 121912799 0.000000e+00 1345.0
38 TraesCS5A01G107600 chr7A 96.738 797 25 1 1 797 220115258 220114463 0.000000e+00 1327.0
39 TraesCS5A01G107600 chr7A 95.859 797 32 1 1 797 59391601 59390806 0.000000e+00 1288.0
40 TraesCS5A01G107600 chr7A 87.354 941 63 17 7141 8056 41598392 41599301 0.000000e+00 1027.0
41 TraesCS5A01G107600 chr7A 87.420 469 32 8 7140 7588 126924307 126923846 1.550000e-141 514.0
42 TraesCS5A01G107600 chr7A 90.968 310 23 4 3456 3760 102268448 102268139 5.820000e-111 412.0
43 TraesCS5A01G107600 chr7A 80.745 483 63 16 7141 7615 69855608 69855148 4.630000e-92 350.0
44 TraesCS5A01G107600 chr3B 97.491 797 19 1 1 797 310864357 310863562 0.000000e+00 1360.0
45 TraesCS5A01G107600 chr3B 87.570 539 56 10 7527 8056 252922296 252921760 1.490000e-171 614.0
46 TraesCS5A01G107600 chr3B 93.426 289 19 0 3465 3753 771975014 771975302 5.780000e-116 429.0
47 TraesCS5A01G107600 chr3B 93.333 285 19 0 3463 3747 771979979 771980263 9.670000e-114 422.0
48 TraesCS5A01G107600 chr3B 92.982 285 20 0 3463 3747 772003961 772004245 4.500000e-112 416.0
49 TraesCS5A01G107600 chr3B 91.582 297 25 0 3463 3759 771980988 771981284 2.090000e-110 411.0
50 TraesCS5A01G107600 chr3B 92.042 289 23 0 3465 3753 771962732 771963020 2.710000e-109 407.0
51 TraesCS5A01G107600 chr3B 91.246 297 26 0 3463 3759 772004970 772005266 9.740000e-109 405.0
52 TraesCS5A01G107600 chr3B 93.750 176 9 2 4960 5134 52743943 52744117 6.200000e-66 263.0
53 TraesCS5A01G107600 chr3B 92.778 180 11 2 4945 5124 279601 279424 8.020000e-65 259.0
54 TraesCS5A01G107600 chr3B 85.443 158 12 5 4102 4259 245935472 245935618 3.890000e-33 154.0
55 TraesCS5A01G107600 chr3B 94.048 84 5 0 3783 3866 132527300 132527383 2.360000e-25 128.0
56 TraesCS5A01G107600 chr3B 89.899 99 10 0 3770 3868 802705055 802705153 2.360000e-25 128.0
57 TraesCS5A01G107600 chr3B 89.412 85 7 2 7050 7132 474402002 474402086 1.110000e-18 106.0
58 TraesCS5A01G107600 chr3B 88.235 85 8 1 7050 7132 765312745 765312661 5.140000e-17 100.0
59 TraesCS5A01G107600 chr1A 97.114 797 21 2 1 797 292580282 292579488 0.000000e+00 1343.0
60 TraesCS5A01G107600 chr1A 86.373 499 40 9 7140 7615 5259225 5258732 3.330000e-143 520.0
61 TraesCS5A01G107600 chr1A 85.413 521 44 13 7146 7641 8237527 8237014 5.580000e-141 512.0
62 TraesCS5A01G107600 chr1A 81.767 532 40 14 7134 7641 33040854 33041352 7.580000e-105 392.0
63 TraesCS5A01G107600 chr1A 79.399 466 59 22 7141 7588 144580742 144580296 2.200000e-75 294.0
64 TraesCS5A01G107600 chr1A 97.590 166 4 0 4960 5125 74014240 74014405 1.320000e-72 285.0
65 TraesCS5A01G107600 chr1A 89.899 198 15 5 4963 5158 27247730 27247536 4.830000e-62 250.0
66 TraesCS5A01G107600 chr1A 92.135 89 7 0 3783 3871 572633144 572633056 8.490000e-25 126.0
67 TraesCS5A01G107600 chr1A 100.000 47 0 0 2517 2563 489238968 489238922 4.010000e-13 87.9
68 TraesCS5A01G107600 chr6A 96.617 798 25 2 1 797 410321364 410320568 0.000000e+00 1323.0
69 TraesCS5A01G107600 chr6A 87.253 455 43 13 7141 7589 211939881 211939436 9.330000e-139 505.0
70 TraesCS5A01G107600 chr6A 95.833 168 7 0 4960 5127 169201104 169201271 1.030000e-68 272.0
71 TraesCS5A01G107600 chr6A 84.615 156 12 8 4102 4257 599048871 599048728 2.340000e-30 145.0
72 TraesCS5A01G107600 chr6A 91.489 94 6 2 3783 3876 27342896 27342987 2.360000e-25 128.0
73 TraesCS5A01G107600 chr6A 96.491 57 2 0 2365 2421 209391425 209391369 2.390000e-15 95.3
74 TraesCS5A01G107600 chr2A 96.496 799 25 3 1 797 695650874 695651671 0.000000e+00 1317.0
75 TraesCS5A01G107600 chr2A 87.971 956 62 30 7132 8056 595702557 595701624 0.000000e+00 1079.0
76 TraesCS5A01G107600 chr2A 86.875 160 10 5 4097 4256 141506464 141506316 1.390000e-37 169.0
77 TraesCS5A01G107600 chr2A 95.455 88 4 0 4167 4254 127198254 127198167 3.030000e-29 141.0
78 TraesCS5A01G107600 chr1D 83.898 944 80 31 7141 8056 48469668 48468769 0.000000e+00 835.0
79 TraesCS5A01G107600 chr1D 94.767 172 8 1 4956 5127 490423149 490423319 4.790000e-67 267.0
80 TraesCS5A01G107600 chr1D 93.182 176 12 0 4960 5135 178466306 178466481 8.020000e-65 259.0
81 TraesCS5A01G107600 chr1D 86.408 103 8 5 7044 7142 448689889 448689989 3.070000e-19 108.0
82 TraesCS5A01G107600 chr1D 89.412 85 7 1 7050 7132 216718806 216718722 1.110000e-18 106.0
83 TraesCS5A01G107600 chr1D 91.667 60 5 0 2362 2421 116546607 116546666 5.180000e-12 84.2
84 TraesCS5A01G107600 chr1D 86.301 73 7 3 2428 2498 31154861 31154790 8.670000e-10 76.8
85 TraesCS5A01G107600 chr3D 82.919 966 80 37 7141 8053 2276000 2276933 0.000000e+00 791.0
86 TraesCS5A01G107600 chr3D 82.241 946 103 37 7141 8053 104963489 104964402 0.000000e+00 756.0
87 TraesCS5A01G107600 chr3D 92.982 57 4 0 2365 2421 362199710 362199654 5.180000e-12 84.2
88 TraesCS5A01G107600 chr3D 97.872 47 1 0 2518 2564 1887635 1887681 1.860000e-11 82.4
89 TraesCS5A01G107600 chr3D 87.143 70 8 1 2427 2495 1887681 1887612 2.410000e-10 78.7
90 TraesCS5A01G107600 chr6D 82.751 945 89 39 7141 8056 315244349 315243450 0.000000e+00 774.0
91 TraesCS5A01G107600 chr6D 82.609 943 84 38 7141 8056 68080099 68079210 0.000000e+00 760.0
92 TraesCS5A01G107600 chr6D 88.447 528 49 11 7537 8056 454504235 454504758 1.910000e-175 627.0
93 TraesCS5A01G107600 chr6D 77.301 489 64 29 7141 7588 119459292 119458810 2.250000e-60 244.0
94 TraesCS5A01G107600 chr4D 85.123 773 62 23 7306 8056 225989050 225988309 0.000000e+00 741.0
95 TraesCS5A01G107600 chr4D 97.368 38 0 1 4095 4132 38344243 38344207 6.750000e-06 63.9
96 TraesCS5A01G107600 chrUn 87.684 544 52 14 7519 8052 15871123 15871661 3.190000e-173 619.0
97 TraesCS5A01G107600 chrUn 92.000 300 22 2 3462 3760 346991806 346992104 3.480000e-113 420.0
98 TraesCS5A01G107600 chrUn 93.258 89 5 1 3783 3871 17148682 17148595 6.560000e-26 130.0
99 TraesCS5A01G107600 chr2B 92.953 298 21 0 3461 3758 142750569 142750272 1.240000e-117 435.0
100 TraesCS5A01G107600 chr4B 84.615 156 12 9 4097 4252 483510185 483510328 2.340000e-30 145.0
101 TraesCS5A01G107600 chr4B 86.957 92 9 2 7043 7132 22844128 22844038 5.140000e-17 100.0
102 TraesCS5A01G107600 chr4B 93.750 64 3 1 2362 2425 19727488 19727426 2.390000e-15 95.3
103 TraesCS5A01G107600 chr4B 80.159 126 12 8 2440 2563 506917841 506917727 1.860000e-11 82.4
104 TraesCS5A01G107600 chr4B 94.872 39 1 1 1919 1956 595714487 595714449 8.730000e-05 60.2
105 TraesCS5A01G107600 chr1B 95.294 85 4 0 3783 3867 129095805 129095889 1.410000e-27 135.0
106 TraesCS5A01G107600 chr1B 90.244 82 4 4 7058 7137 634311387 634311466 3.980000e-18 104.0
107 TraesCS5A01G107600 chr1B 88.235 85 8 1 7050 7132 310360982 310360898 5.140000e-17 100.0
108 TraesCS5A01G107600 chr6B 96.491 57 2 0 2365 2421 278674697 278674641 2.390000e-15 95.3
109 TraesCS5A01G107600 chr6B 95.918 49 0 2 2517 2564 674946757 674946804 2.410000e-10 78.7
110 TraesCS5A01G107600 chr4A 95.082 61 2 1 2362 2422 593377515 593377574 2.390000e-15 95.3
111 TraesCS5A01G107600 chr4A 95.122 41 1 1 4092 4132 562459202 562459241 6.750000e-06 63.9
112 TraesCS5A01G107600 chr2D 86.420 81 8 3 2417 2496 622352010 622351932 1.440000e-12 86.1
113 TraesCS5A01G107600 chr7B 89.231 65 4 3 2501 2563 373180831 373180768 2.410000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G107600 chr5A 184227750 184235805 8055 True 14877.000 14877 100.0000 1 8056 1 chr5A.!!$R2 8055
1 TraesCS5A01G107600 chr5D 138467403 138473098 5695 False 1953.200 3500 95.9262 798 7140 5 chr5D.!!$F3 6342
2 TraesCS5A01G107600 chr5D 532006623 532007550 927 True 726.000 726 81.7440 7130 8056 1 chr5D.!!$R1 926
3 TraesCS5A01G107600 chr5B 155712243 155717795 5552 False 1991.575 3314 91.1410 799 6988 4 chr5B.!!$F3 6189
4 TraesCS5A01G107600 chr3A 23266974 23267768 794 False 1365.000 1365 97.6160 1 797 1 chr3A.!!$F1 796
5 TraesCS5A01G107600 chr3A 185443879 185444788 909 True 1044.000 1044 87.6600 7141 8056 1 chr3A.!!$R4 915
6 TraesCS5A01G107600 chr3A 80486023 80486543 520 True 496.000 496 84.6300 7141 7641 1 chr3A.!!$R2 500
7 TraesCS5A01G107600 chr7A 13136713 13137507 794 True 1360.000 1360 97.4910 1 797 1 chr7A.!!$R1 796
8 TraesCS5A01G107600 chr7A 121912003 121912799 796 False 1345.000 1345 97.1180 1 798 1 chr7A.!!$F2 797
9 TraesCS5A01G107600 chr7A 220114463 220115258 795 True 1327.000 1327 96.7380 1 797 1 chr7A.!!$R6 796
10 TraesCS5A01G107600 chr7A 59390806 59391601 795 True 1288.000 1288 95.8590 1 797 1 chr7A.!!$R2 796
11 TraesCS5A01G107600 chr7A 41598392 41599301 909 False 1027.000 1027 87.3540 7141 8056 1 chr7A.!!$F1 915
12 TraesCS5A01G107600 chr3B 310863562 310864357 795 True 1360.000 1360 97.4910 1 797 1 chr3B.!!$R3 796
13 TraesCS5A01G107600 chr3B 252921760 252922296 536 True 614.000 614 87.5700 7527 8056 1 chr3B.!!$R2 529
14 TraesCS5A01G107600 chr3B 771979979 771981284 1305 False 416.500 422 92.4575 3463 3759 2 chr3B.!!$F8 296
15 TraesCS5A01G107600 chr3B 772003961 772005266 1305 False 410.500 416 92.1140 3463 3759 2 chr3B.!!$F9 296
16 TraesCS5A01G107600 chr1A 292579488 292580282 794 True 1343.000 1343 97.1140 1 797 1 chr1A.!!$R5 796
17 TraesCS5A01G107600 chr1A 8237014 8237527 513 True 512.000 512 85.4130 7146 7641 1 chr1A.!!$R2 495
18 TraesCS5A01G107600 chr6A 410320568 410321364 796 True 1323.000 1323 96.6170 1 797 1 chr6A.!!$R3 796
19 TraesCS5A01G107600 chr2A 695650874 695651671 797 False 1317.000 1317 96.4960 1 797 1 chr2A.!!$F1 796
20 TraesCS5A01G107600 chr2A 595701624 595702557 933 True 1079.000 1079 87.9710 7132 8056 1 chr2A.!!$R3 924
21 TraesCS5A01G107600 chr1D 48468769 48469668 899 True 835.000 835 83.8980 7141 8056 1 chr1D.!!$R2 915
22 TraesCS5A01G107600 chr3D 2276000 2276933 933 False 791.000 791 82.9190 7141 8053 1 chr3D.!!$F2 912
23 TraesCS5A01G107600 chr3D 104963489 104964402 913 False 756.000 756 82.2410 7141 8053 1 chr3D.!!$F3 912
24 TraesCS5A01G107600 chr6D 315243450 315244349 899 True 774.000 774 82.7510 7141 8056 1 chr6D.!!$R3 915
25 TraesCS5A01G107600 chr6D 68079210 68080099 889 True 760.000 760 82.6090 7141 8056 1 chr6D.!!$R1 915
26 TraesCS5A01G107600 chr6D 454504235 454504758 523 False 627.000 627 88.4470 7537 8056 1 chr6D.!!$F1 519
27 TraesCS5A01G107600 chr4D 225988309 225989050 741 True 741.000 741 85.1230 7306 8056 1 chr4D.!!$R2 750
28 TraesCS5A01G107600 chrUn 15871123 15871661 538 False 619.000 619 87.6840 7519 8052 1 chrUn.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 798 0.525761 GCAAAGCACGGGCATTCTAA 59.474 50.000 14.57 0.00 44.61 2.10 F
889 907 0.766288 GCCCCTCCCAGCTATTCTCT 60.766 60.000 0.00 0.00 0.00 3.10 F
1635 1664 1.026584 AGTTTTGGTTTTCGGGACCG 58.973 50.000 3.96 3.96 40.13 4.79 F
2120 2151 1.481056 CCTTAAGGATCCCGGCCGAT 61.481 60.000 30.73 14.04 37.39 4.18 F
3261 3348 0.810823 TGTTCGAAACGGACACACCC 60.811 55.000 0.00 0.00 40.69 4.61 F
3706 4803 2.787473 AGTTTGATGGCCGAGATCAA 57.213 45.000 11.86 11.86 37.91 2.57 F
5081 6215 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16 F
6071 7206 2.455032 CGAGGAGAGCTTGTTACATCG 58.545 52.381 0.00 0.00 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2164 1.553248 ACGTCGGATTGATTTGGAGGA 59.447 47.619 0.00 0.00 0.00 3.71 R
2514 2601 5.350633 ACGCACACTTAGTACAACTTTACA 58.649 37.500 0.00 0.00 0.00 2.41 R
3078 3165 0.618968 AGACGCCCTCATTTCCTCCT 60.619 55.000 0.00 0.00 0.00 3.69 R
3645 3732 1.813753 GCTCCAATGGCGAGCGTTA 60.814 57.895 0.00 0.00 43.04 3.18 R
5060 6194 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26 R
5334 6469 0.465287 CAACAAAGCCAGGCCACTTT 59.535 50.000 8.22 9.16 36.56 2.66 R
6535 7670 1.271840 TACCATTCTTGCGAGGGGCT 61.272 55.000 0.00 0.00 44.05 5.19 R
7684 9088 0.036164 ACTGCAGTATGGCGGAAACA 59.964 50.000 20.16 0.00 42.91 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.589223 TCGACAAAAACATCGCCCAC 59.411 50.000 0.00 0.00 38.24 4.61
203 205 8.785329 TCAACTAAATGTAATGCACTATCACA 57.215 30.769 0.00 0.00 0.00 3.58
438 441 9.033711 TGATGGAAAGGATATGAACAATGAAAA 57.966 29.630 0.00 0.00 0.00 2.29
603 609 6.129179 GGTGAATATGGAGGAAATGGAAAGA 58.871 40.000 0.00 0.00 0.00 2.52
709 715 4.039973 AGTTAAGGGACAACATCTTCGTGA 59.960 41.667 0.00 0.00 0.00 4.35
792 798 0.525761 GCAAAGCACGGGCATTCTAA 59.474 50.000 14.57 0.00 44.61 2.10
802 808 7.394816 AGCACGGGCATTCTAATAGTTATATT 58.605 34.615 14.57 0.00 44.61 1.28
835 849 1.001406 GCTGTTCACTGTAGCTCTGGT 59.999 52.381 0.00 0.00 34.70 4.00
866 880 1.957186 GTAAACAGCGCACCACGGA 60.957 57.895 11.47 0.00 43.93 4.69
885 903 3.171388 CCGCCCCTCCCAGCTATT 61.171 66.667 0.00 0.00 0.00 1.73
886 904 2.427753 CGCCCCTCCCAGCTATTC 59.572 66.667 0.00 0.00 0.00 1.75
887 905 2.143419 CGCCCCTCCCAGCTATTCT 61.143 63.158 0.00 0.00 0.00 2.40
888 906 1.757949 GCCCCTCCCAGCTATTCTC 59.242 63.158 0.00 0.00 0.00 2.87
889 907 0.766288 GCCCCTCCCAGCTATTCTCT 60.766 60.000 0.00 0.00 0.00 3.10
890 908 1.347062 CCCCTCCCAGCTATTCTCTC 58.653 60.000 0.00 0.00 0.00 3.20
891 909 1.347062 CCCTCCCAGCTATTCTCTCC 58.653 60.000 0.00 0.00 0.00 3.71
892 910 1.347062 CCTCCCAGCTATTCTCTCCC 58.653 60.000 0.00 0.00 0.00 4.30
893 911 1.132881 CCTCCCAGCTATTCTCTCCCT 60.133 57.143 0.00 0.00 0.00 4.20
894 912 2.110899 CCTCCCAGCTATTCTCTCCCTA 59.889 54.545 0.00 0.00 0.00 3.53
895 913 3.430453 CTCCCAGCTATTCTCTCCCTAG 58.570 54.545 0.00 0.00 0.00 3.02
896 914 2.792370 TCCCAGCTATTCTCTCCCTAGT 59.208 50.000 0.00 0.00 0.00 2.57
897 915 3.161866 CCCAGCTATTCTCTCCCTAGTC 58.838 54.545 0.00 0.00 0.00 2.59
898 916 3.161866 CCAGCTATTCTCTCCCTAGTCC 58.838 54.545 0.00 0.00 0.00 3.85
899 917 3.161866 CAGCTATTCTCTCCCTAGTCCC 58.838 54.545 0.00 0.00 0.00 4.46
900 918 3.068237 AGCTATTCTCTCCCTAGTCCCT 58.932 50.000 0.00 0.00 0.00 4.20
901 919 4.043561 CAGCTATTCTCTCCCTAGTCCCTA 59.956 50.000 0.00 0.00 0.00 3.53
902 920 4.043686 AGCTATTCTCTCCCTAGTCCCTAC 59.956 50.000 0.00 0.00 0.00 3.18
903 921 4.043686 GCTATTCTCTCCCTAGTCCCTACT 59.956 50.000 0.00 0.00 39.91 2.57
904 922 5.458508 GCTATTCTCTCCCTAGTCCCTACTT 60.459 48.000 0.00 0.00 37.15 2.24
905 923 4.969136 TTCTCTCCCTAGTCCCTACTTT 57.031 45.455 0.00 0.00 37.15 2.66
906 924 4.523168 TCTCTCCCTAGTCCCTACTTTC 57.477 50.000 0.00 0.00 37.15 2.62
907 925 3.204831 TCTCTCCCTAGTCCCTACTTTCC 59.795 52.174 0.00 0.00 37.15 3.13
908 926 3.205733 CTCTCCCTAGTCCCTACTTTCCT 59.794 52.174 0.00 0.00 37.15 3.36
909 927 4.387232 TCTCCCTAGTCCCTACTTTCCTA 58.613 47.826 0.00 0.00 37.15 2.94
910 928 4.797919 TCTCCCTAGTCCCTACTTTCCTAA 59.202 45.833 0.00 0.00 37.15 2.69
911 929 5.257101 TCTCCCTAGTCCCTACTTTCCTAAA 59.743 44.000 0.00 0.00 37.15 1.85
912 930 5.919166 TCCCTAGTCCCTACTTTCCTAAAA 58.081 41.667 0.00 0.00 37.15 1.52
913 931 6.333479 TCCCTAGTCCCTACTTTCCTAAAAA 58.667 40.000 0.00 0.00 37.15 1.94
938 956 7.981475 AAAAAGCTATTCTCTCCCTACTACT 57.019 36.000 0.00 0.00 0.00 2.57
939 957 7.591421 AAAAGCTATTCTCTCCCTACTACTC 57.409 40.000 0.00 0.00 0.00 2.59
940 958 5.915744 AGCTATTCTCTCCCTACTACTCA 57.084 43.478 0.00 0.00 0.00 3.41
941 959 6.268855 AGCTATTCTCTCCCTACTACTCAA 57.731 41.667 0.00 0.00 0.00 3.02
942 960 6.674573 AGCTATTCTCTCCCTACTACTCAAA 58.325 40.000 0.00 0.00 0.00 2.69
943 961 7.126733 AGCTATTCTCTCCCTACTACTCAAAA 58.873 38.462 0.00 0.00 0.00 2.44
944 962 7.620094 AGCTATTCTCTCCCTACTACTCAAAAA 59.380 37.037 0.00 0.00 0.00 1.94
968 986 8.568676 AAAAGAAAAAGCTATTCTCTCCCTAC 57.431 34.615 13.39 0.00 36.14 3.18
969 987 7.503492 AAGAAAAAGCTATTCTCTCCCTACT 57.497 36.000 13.39 0.00 36.14 2.57
970 988 8.611051 AAGAAAAAGCTATTCTCTCCCTACTA 57.389 34.615 13.39 0.00 36.14 1.82
971 989 8.014070 AGAAAAAGCTATTCTCTCCCTACTAC 57.986 38.462 8.49 0.00 31.61 2.73
972 990 7.842236 AGAAAAAGCTATTCTCTCCCTACTACT 59.158 37.037 8.49 0.00 31.61 2.57
973 991 7.591421 AAAAGCTATTCTCTCCCTACTACTC 57.409 40.000 0.00 0.00 0.00 2.59
974 992 5.915744 AGCTATTCTCTCCCTACTACTCA 57.084 43.478 0.00 0.00 0.00 3.41
975 993 6.268855 AGCTATTCTCTCCCTACTACTCAA 57.731 41.667 0.00 0.00 0.00 3.02
976 994 6.674573 AGCTATTCTCTCCCTACTACTCAAA 58.325 40.000 0.00 0.00 0.00 2.69
977 995 7.126733 AGCTATTCTCTCCCTACTACTCAAAA 58.873 38.462 0.00 0.00 0.00 2.44
978 996 7.620094 AGCTATTCTCTCCCTACTACTCAAAAA 59.380 37.037 0.00 0.00 0.00 1.94
1000 1018 7.695480 AAAAAGAAAGAAGCTATTCTCTCCC 57.305 36.000 9.11 0.00 45.25 4.30
1001 1019 6.634889 AAAGAAAGAAGCTATTCTCTCCCT 57.365 37.500 9.11 0.00 45.25 4.20
1002 1020 7.741554 AAAGAAAGAAGCTATTCTCTCCCTA 57.258 36.000 9.11 0.00 45.25 3.53
1003 1021 6.724893 AGAAAGAAGCTATTCTCTCCCTAC 57.275 41.667 4.07 0.00 45.25 3.18
1004 1022 6.440354 AGAAAGAAGCTATTCTCTCCCTACT 58.560 40.000 4.07 0.00 45.25 2.57
1005 1023 7.588169 AGAAAGAAGCTATTCTCTCCCTACTA 58.412 38.462 4.07 0.00 45.25 1.82
1006 1024 7.504574 AGAAAGAAGCTATTCTCTCCCTACTAC 59.495 40.741 4.07 0.00 45.25 2.73
1007 1025 6.524545 AGAAGCTATTCTCTCCCTACTACT 57.475 41.667 0.00 0.00 42.25 2.57
1008 1026 6.540083 AGAAGCTATTCTCTCCCTACTACTC 58.460 44.000 0.00 0.00 42.25 2.59
1009 1027 5.915744 AGCTATTCTCTCCCTACTACTCA 57.084 43.478 0.00 0.00 0.00 3.41
1010 1028 6.268855 AGCTATTCTCTCCCTACTACTCAA 57.731 41.667 0.00 0.00 0.00 3.02
1011 1029 6.674573 AGCTATTCTCTCCCTACTACTCAAA 58.325 40.000 0.00 0.00 0.00 2.69
1012 1030 7.126733 AGCTATTCTCTCCCTACTACTCAAAA 58.873 38.462 0.00 0.00 0.00 2.44
1013 1031 7.620094 AGCTATTCTCTCCCTACTACTCAAAAA 59.380 37.037 0.00 0.00 0.00 1.94
1500 1528 3.430895 GCTTCTCGTTGGTCGTAATTGAA 59.569 43.478 0.00 0.00 40.80 2.69
1505 1533 2.093783 CGTTGGTCGTAATTGAAGAGGC 59.906 50.000 0.00 0.00 34.52 4.70
1635 1664 1.026584 AGTTTTGGTTTTCGGGACCG 58.973 50.000 3.96 3.96 40.13 4.79
1684 1713 3.244561 TGTCAGATCTTGAGGGTTGTTCC 60.245 47.826 0.00 0.00 36.21 3.62
1706 1735 3.532542 GAGGGTTCTGTATTGTGTAGGC 58.467 50.000 0.00 0.00 0.00 3.93
1766 1795 7.124599 TCCATTTCAGATAATTGAATTGCCAGT 59.875 33.333 0.00 0.00 37.23 4.00
1887 1916 8.728833 TGGTTTAAAATGGCATTTCATGAAATC 58.271 29.630 27.08 20.75 38.84 2.17
1927 1956 7.496346 TCCAAGTTCCAACTATCTCAATACT 57.504 36.000 0.00 0.00 38.57 2.12
1931 1960 6.565234 AGTTCCAACTATCTCAATACTCACG 58.435 40.000 0.00 0.00 37.52 4.35
1932 1961 6.377429 AGTTCCAACTATCTCAATACTCACGA 59.623 38.462 0.00 0.00 37.52 4.35
1933 1962 6.378710 TCCAACTATCTCAATACTCACGAG 57.621 41.667 0.00 0.00 0.00 4.18
1934 1963 6.120220 TCCAACTATCTCAATACTCACGAGA 58.880 40.000 0.00 0.00 39.95 4.04
1976 2005 3.054582 GGGGTAGGAAAGGGTTACAGAAG 60.055 52.174 0.00 0.00 0.00 2.85
1977 2006 3.842436 GGGTAGGAAAGGGTTACAGAAGA 59.158 47.826 0.00 0.00 0.00 2.87
1978 2007 4.287845 GGGTAGGAAAGGGTTACAGAAGAA 59.712 45.833 0.00 0.00 0.00 2.52
2038 2067 1.644786 GGCTACCATTCCACACACGC 61.645 60.000 0.00 0.00 0.00 5.34
2120 2151 1.481056 CCTTAAGGATCCCGGCCGAT 61.481 60.000 30.73 14.04 37.39 4.18
2133 2164 2.953821 CCGATTGCCAAACACGCT 59.046 55.556 0.00 0.00 0.00 5.07
2451 2509 7.802547 AGTACCCCCTCCTATCCAAATTAATTA 59.197 37.037 0.01 0.00 0.00 1.40
2453 2511 7.899972 ACCCCCTCCTATCCAAATTAATTAAA 58.100 34.615 1.21 0.00 0.00 1.52
2514 2601 9.953565 AAGTGTGTATGGTTATAATAAGTGTGT 57.046 29.630 0.00 0.00 0.00 3.72
2726 2813 2.202878 CCGGGTCACGCCTATGTG 60.203 66.667 0.00 0.00 42.52 3.21
2842 2929 7.604164 ACAATAACACACCACACAAAATTTTGA 59.396 29.630 32.20 9.89 40.55 2.69
3078 3165 4.474651 ACCTCAAATCCAGTCCATATGTGA 59.525 41.667 1.24 0.00 0.00 3.58
3130 3217 4.778143 GCCCGCCATGTCGAACCT 62.778 66.667 0.00 0.00 0.00 3.50
3260 3347 2.680429 TGTTCGAAACGGACACACC 58.320 52.632 0.00 0.00 40.69 4.16
3261 3348 0.810823 TGTTCGAAACGGACACACCC 60.811 55.000 0.00 0.00 40.69 4.61
3520 3607 4.749245 AGGCAATATATTAACTGCACGC 57.251 40.909 8.88 1.61 36.50 5.34
3540 3627 4.326817 ACGCGTTGCACGTTAATATTTAGA 59.673 37.500 5.58 0.00 44.73 2.10
3667 3754 3.494378 CTCGCCATTGGAGCAGTG 58.506 61.111 6.95 0.00 0.00 3.66
3706 4803 2.787473 AGTTTGATGGCCGAGATCAA 57.213 45.000 11.86 11.86 37.91 2.57
3807 4904 4.529377 TCCCTCCGTCCCATAATGTAATAC 59.471 45.833 0.00 0.00 0.00 1.89
4048 5145 7.042658 GGGCATATCGTTACATATTTAGCTAGC 60.043 40.741 6.62 6.62 0.00 3.42
4093 5190 8.425577 ACAACTTGTGTCTATATGTAATCTGC 57.574 34.615 0.00 0.00 34.38 4.26
4158 5255 8.499403 TGAATCGGATATATGTTTGTTCACAA 57.501 30.769 0.00 0.00 0.00 3.33
4397 5504 5.928839 AGCTTCCAGTATGTATAATTGCTCG 59.071 40.000 0.00 0.00 0.00 5.03
4745 5852 3.197265 ACCTCTTGCATTGTGTTTTTGC 58.803 40.909 0.00 0.00 36.91 3.68
4965 6099 9.832445 TGTCAAGAAACACTCTTATATATTCCC 57.168 33.333 0.00 0.00 42.84 3.97
4968 6102 9.495572 CAAGAAACACTCTTATATATTCCCTCC 57.504 37.037 0.00 0.00 42.84 4.30
4969 6103 7.897864 AGAAACACTCTTATATATTCCCTCCG 58.102 38.462 0.00 0.00 0.00 4.63
4970 6104 7.509659 AGAAACACTCTTATATATTCCCTCCGT 59.490 37.037 0.00 0.00 0.00 4.69
4971 6105 7.613551 AACACTCTTATATATTCCCTCCGTT 57.386 36.000 0.00 0.00 0.00 4.44
4972 6106 7.229581 ACACTCTTATATATTCCCTCCGTTC 57.770 40.000 0.00 0.00 0.00 3.95
4973 6107 6.210984 ACACTCTTATATATTCCCTCCGTTCC 59.789 42.308 0.00 0.00 0.00 3.62
4974 6108 6.437793 CACTCTTATATATTCCCTCCGTTCCT 59.562 42.308 0.00 0.00 0.00 3.36
4975 6109 7.614583 CACTCTTATATATTCCCTCCGTTCCTA 59.385 40.741 0.00 0.00 0.00 2.94
4976 6110 8.175431 ACTCTTATATATTCCCTCCGTTCCTAA 58.825 37.037 0.00 0.00 0.00 2.69
4977 6111 8.961293 TCTTATATATTCCCTCCGTTCCTAAA 57.039 34.615 0.00 0.00 0.00 1.85
4978 6112 9.556772 TCTTATATATTCCCTCCGTTCCTAAAT 57.443 33.333 0.00 0.00 0.00 1.40
4983 6117 8.863872 ATATTCCCTCCGTTCCTAAATATTTG 57.136 34.615 11.05 1.40 0.00 2.32
4984 6118 5.703730 TCCCTCCGTTCCTAAATATTTGT 57.296 39.130 11.05 0.00 0.00 2.83
4985 6119 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4986 6120 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4987 6121 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4988 6122 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4989 6123 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4990 6124 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4991 6125 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4992 6126 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4993 6127 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5010 6144 9.477484 TCTTTCTAGACATTTCAAACAGACTAC 57.523 33.333 0.00 0.00 0.00 2.73
5011 6145 9.261180 CTTTCTAGACATTTCAAACAGACTACA 57.739 33.333 0.00 0.00 0.00 2.74
5012 6146 9.607988 TTTCTAGACATTTCAAACAGACTACAA 57.392 29.630 0.00 0.00 0.00 2.41
5013 6147 8.589335 TCTAGACATTTCAAACAGACTACAAC 57.411 34.615 0.00 0.00 0.00 3.32
5014 6148 8.201464 TCTAGACATTTCAAACAGACTACAACA 58.799 33.333 0.00 0.00 0.00 3.33
5015 6149 7.807977 AGACATTTCAAACAGACTACAACAT 57.192 32.000 0.00 0.00 0.00 2.71
5016 6150 8.902540 AGACATTTCAAACAGACTACAACATA 57.097 30.769 0.00 0.00 0.00 2.29
5017 6151 8.774586 AGACATTTCAAACAGACTACAACATAC 58.225 33.333 0.00 0.00 0.00 2.39
5018 6152 7.572759 ACATTTCAAACAGACTACAACATACG 58.427 34.615 0.00 0.00 0.00 3.06
5019 6153 6.533819 TTTCAAACAGACTACAACATACGG 57.466 37.500 0.00 0.00 0.00 4.02
5020 6154 5.456548 TCAAACAGACTACAACATACGGA 57.543 39.130 0.00 0.00 0.00 4.69
5021 6155 6.032956 TCAAACAGACTACAACATACGGAT 57.967 37.500 0.00 0.00 0.00 4.18
5022 6156 5.867174 TCAAACAGACTACAACATACGGATG 59.133 40.000 5.94 5.94 39.16 3.51
5024 6158 6.519679 AACAGACTACAACATACGGATGTA 57.480 37.500 15.10 0.00 45.93 2.29
5025 6159 6.710597 ACAGACTACAACATACGGATGTAT 57.289 37.500 15.10 8.21 45.93 2.29
5065 6199 5.627499 TGTGAATACACTCATTTTGCTCC 57.373 39.130 0.00 0.00 46.07 4.70
5066 6200 4.154015 TGTGAATACACTCATTTTGCTCCG 59.846 41.667 0.00 0.00 46.07 4.63
5067 6201 4.154195 GTGAATACACTCATTTTGCTCCGT 59.846 41.667 0.00 0.00 42.99 4.69
5068 6202 5.350365 GTGAATACACTCATTTTGCTCCGTA 59.650 40.000 0.00 0.00 42.99 4.02
5069 6203 6.037172 GTGAATACACTCATTTTGCTCCGTAT 59.963 38.462 0.00 0.00 42.99 3.06
5070 6204 5.991328 ATACACTCATTTTGCTCCGTATG 57.009 39.130 0.00 0.00 0.00 2.39
5071 6205 3.674997 ACACTCATTTTGCTCCGTATGT 58.325 40.909 0.00 0.00 0.00 2.29
5072 6206 4.827692 ACACTCATTTTGCTCCGTATGTA 58.172 39.130 0.00 0.00 0.00 2.29
5073 6207 4.870426 ACACTCATTTTGCTCCGTATGTAG 59.130 41.667 0.00 0.00 0.00 2.74
5074 6208 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5075 6209 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
5076 6210 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5077 6211 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5078 6212 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5079 6213 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5080 6214 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5081 6215 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5082 6216 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5083 6217 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5084 6218 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5085 6219 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5086 6220 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5087 6221 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5088 6222 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5089 6223 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5090 6224 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5091 6225 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5092 6226 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5093 6227 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5094 6228 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5095 6229 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5096 6230 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5097 6231 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5098 6232 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5099 6233 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5100 6234 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5101 6235 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5102 6236 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5115 6249 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5116 6250 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5117 6251 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5118 6252 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5119 6253 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5120 6254 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5121 6255 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5334 6469 7.182817 TCCTCTTTTTGAATCGGAATCTCTA 57.817 36.000 0.00 0.00 0.00 2.43
5422 6557 6.098266 GGATGGGTATGCCTTCTTAAACATTT 59.902 38.462 0.00 0.00 34.45 2.32
5628 6763 8.731275 TTCATATTCGAACCATGTCAAGTTAT 57.269 30.769 16.88 0.00 0.00 1.89
5703 6838 3.502211 ACGCCAAGTTATGTTCCTTTGAG 59.498 43.478 0.00 0.00 0.00 3.02
5782 6917 5.276348 CCGCGGCAAGAAAATTGATTTTATC 60.276 40.000 14.67 0.00 39.86 1.75
6071 7206 2.455032 CGAGGAGAGCTTGTTACATCG 58.545 52.381 0.00 0.00 0.00 3.84
6535 7670 4.081642 GCGAATGATCCTGCCCTTAGTATA 60.082 45.833 0.00 0.00 0.00 1.47
6616 7751 2.052157 GTCACAGCACTGTTCTACGAC 58.948 52.381 0.00 1.78 42.83 4.34
6731 7866 4.788679 TGTGATGAGAAGATTGGATGCAT 58.211 39.130 0.00 0.00 0.00 3.96
6749 7884 2.863739 CATTCAGTGCTGCATTCTGTG 58.136 47.619 16.75 7.87 0.00 3.66
6758 7893 2.938314 GCTGCATTCTGTGTCATCTCCA 60.938 50.000 0.00 0.00 0.00 3.86
6766 7901 1.774254 TGTGTCATCTCCAGGTTTGGT 59.226 47.619 0.00 0.00 45.26 3.67
6782 7917 4.323562 GGTTTGGTTACCTCTGCAGTAGAT 60.324 45.833 14.67 0.00 34.21 1.98
6858 7993 6.127196 TGTGTGATAGTGTTATCTACCATGCA 60.127 38.462 0.00 0.00 37.23 3.96
6920 8055 6.670695 AGGAACCTTGTGCTATTTTTCATT 57.329 33.333 0.00 0.00 0.00 2.57
6955 8090 8.820933 TGAAATGATGCGTTTTCAACAAATTTA 58.179 25.926 3.76 0.00 38.52 1.40
7008 8143 5.191722 TGGAATTTACTGAGAGGGCATAACT 59.808 40.000 0.00 0.00 0.00 2.24
7072 8207 5.370623 ACTCCCTGTCCCATAATATAGGT 57.629 43.478 0.00 0.00 0.00 3.08
7094 8229 5.334569 GGTCGTTTTTGCAAGCTAACATAGA 60.335 40.000 16.37 7.22 0.00 1.98
7132 8267 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
7144 8279 5.222171 ACGGAGGGAGTATAAGAGAAGCTAT 60.222 44.000 0.00 0.00 0.00 2.97
7274 8430 2.911143 CCCCTATCGGCTTGCTGT 59.089 61.111 1.11 0.00 0.00 4.40
7381 8635 0.324943 ACGACTAATTGGCCAGCTGT 59.675 50.000 13.81 3.83 0.00 4.40
7382 8636 1.271379 ACGACTAATTGGCCAGCTGTT 60.271 47.619 13.81 2.11 0.00 3.16
7384 8638 2.162681 GACTAATTGGCCAGCTGTTGT 58.837 47.619 13.81 1.43 0.00 3.32
7385 8639 1.888512 ACTAATTGGCCAGCTGTTGTG 59.111 47.619 13.81 0.00 0.00 3.33
7386 8640 0.602562 TAATTGGCCAGCTGTTGTGC 59.397 50.000 13.81 8.61 0.00 4.57
7387 8641 2.424705 AATTGGCCAGCTGTTGTGCG 62.425 55.000 13.81 0.00 38.13 5.34
7388 8642 4.873810 TGGCCAGCTGTTGTGCGT 62.874 61.111 13.81 0.00 38.13 5.24
7511 8841 4.729227 CAACCCTTTGCCCGTAATATTT 57.271 40.909 0.00 0.00 0.00 1.40
7512 8842 5.079689 CAACCCTTTGCCCGTAATATTTT 57.920 39.130 0.00 0.00 0.00 1.82
7513 8843 5.483811 CAACCCTTTGCCCGTAATATTTTT 58.516 37.500 0.00 0.00 0.00 1.94
7514 8844 5.333299 ACCCTTTGCCCGTAATATTTTTC 57.667 39.130 0.00 0.00 0.00 2.29
7515 8845 4.160814 ACCCTTTGCCCGTAATATTTTTCC 59.839 41.667 0.00 0.00 0.00 3.13
7516 8846 4.356289 CCTTTGCCCGTAATATTTTTCCG 58.644 43.478 0.00 0.00 0.00 4.30
7517 8847 3.423996 TTGCCCGTAATATTTTTCCGC 57.576 42.857 0.00 0.00 0.00 5.54
7518 8848 1.677052 TGCCCGTAATATTTTTCCGCC 59.323 47.619 0.00 0.00 0.00 6.13
7519 8849 1.677052 GCCCGTAATATTTTTCCGCCA 59.323 47.619 0.00 0.00 0.00 5.69
7520 8850 2.295070 GCCCGTAATATTTTTCCGCCAT 59.705 45.455 0.00 0.00 0.00 4.40
7521 8851 3.502979 GCCCGTAATATTTTTCCGCCATA 59.497 43.478 0.00 0.00 0.00 2.74
7522 8852 4.157105 GCCCGTAATATTTTTCCGCCATAT 59.843 41.667 0.00 0.00 0.00 1.78
7523 8853 5.636837 CCCGTAATATTTTTCCGCCATATG 58.363 41.667 0.00 0.00 0.00 1.78
7524 8854 5.182380 CCCGTAATATTTTTCCGCCATATGT 59.818 40.000 1.24 0.00 0.00 2.29
7525 8855 6.294286 CCCGTAATATTTTTCCGCCATATGTT 60.294 38.462 1.24 0.00 0.00 2.71
7534 8864 1.139226 CGCCATATGTTTGCGCCAAC 61.139 55.000 16.88 16.88 41.95 3.77
7535 8865 0.173255 GCCATATGTTTGCGCCAACT 59.827 50.000 22.98 12.27 0.00 3.16
7554 8954 1.328430 TTTTTCCCGCCACCCGTTTT 61.328 50.000 0.00 0.00 34.38 2.43
7571 8973 0.741574 TTTCCGCCATATGTTCGCGT 60.742 50.000 19.06 0.00 44.29 6.01
7679 9083 2.668550 GCGCCAACTCTTTCCCGT 60.669 61.111 0.00 0.00 0.00 5.28
7684 9088 0.396811 CCAACTCTTTCCCGTCACCT 59.603 55.000 0.00 0.00 0.00 4.00
7744 9190 8.401955 TTTTCTCATCCCTACCTATAAAACCT 57.598 34.615 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 149 2.762887 TCCATCTCGCTTCATCAGTTCT 59.237 45.455 0.00 0.00 0.00 3.01
203 205 9.853177 ACATCTAAGCACTAAATAAGCCTAAAT 57.147 29.630 0.00 0.00 0.00 1.40
438 441 7.505248 TGCTATCACATAGTCATCTCTCTTCTT 59.495 37.037 0.00 0.00 35.29 2.52
619 625 7.213178 AGATTGTGGGAAGACATAAGGTAAT 57.787 36.000 0.00 0.00 0.00 1.89
690 696 3.071023 TCTTCACGAAGATGTTGTCCCTT 59.929 43.478 5.38 0.00 42.06 3.95
709 715 8.697507 AAGTTGTGGTCATCTTTTATCTTCTT 57.302 30.769 0.00 0.00 31.87 2.52
777 783 3.560636 AACTATTAGAATGCCCGTGCT 57.439 42.857 0.00 0.00 38.71 4.40
805 811 3.769792 ACAGTGAACAGCTGTTTGCGTT 61.770 45.455 31.58 14.60 43.87 4.84
835 849 1.078988 GTTTACACCGGCCGATGGA 60.079 57.895 30.73 16.47 0.00 3.41
879 897 3.068237 AGGGACTAGGGAGAGAATAGCT 58.932 50.000 0.00 0.00 36.02 3.32
880 898 3.536075 AGGGACTAGGGAGAGAATAGC 57.464 52.381 0.00 0.00 36.02 2.97
881 899 5.853572 AGTAGGGACTAGGGAGAGAATAG 57.146 47.826 0.00 0.00 44.14 1.73
882 900 6.411789 GGAAAGTAGGGACTAGGGAGAGAATA 60.412 46.154 0.00 0.00 44.14 1.75
883 901 5.460416 GAAAGTAGGGACTAGGGAGAGAAT 58.540 45.833 0.00 0.00 44.14 2.40
884 902 4.325974 GGAAAGTAGGGACTAGGGAGAGAA 60.326 50.000 0.00 0.00 44.14 2.87
885 903 3.204831 GGAAAGTAGGGACTAGGGAGAGA 59.795 52.174 0.00 0.00 44.14 3.10
886 904 3.205733 AGGAAAGTAGGGACTAGGGAGAG 59.794 52.174 0.00 0.00 44.14 3.20
887 905 3.208173 AGGAAAGTAGGGACTAGGGAGA 58.792 50.000 0.00 0.00 44.14 3.71
888 906 3.691698 AGGAAAGTAGGGACTAGGGAG 57.308 52.381 0.00 0.00 44.14 4.30
889 907 5.557247 TTTAGGAAAGTAGGGACTAGGGA 57.443 43.478 0.00 0.00 44.14 4.20
890 908 6.631763 TTTTTAGGAAAGTAGGGACTAGGG 57.368 41.667 0.00 0.00 44.14 3.53
914 932 7.620094 TGAGTAGTAGGGAGAGAATAGCTTTTT 59.380 37.037 0.00 0.00 0.00 1.94
915 933 7.126733 TGAGTAGTAGGGAGAGAATAGCTTTT 58.873 38.462 0.00 0.00 0.00 2.27
916 934 6.674573 TGAGTAGTAGGGAGAGAATAGCTTT 58.325 40.000 0.00 0.00 0.00 3.51
917 935 6.268855 TGAGTAGTAGGGAGAGAATAGCTT 57.731 41.667 0.00 0.00 0.00 3.74
918 936 5.915744 TGAGTAGTAGGGAGAGAATAGCT 57.084 43.478 0.00 0.00 0.00 3.32
919 937 6.963083 TTTGAGTAGTAGGGAGAGAATAGC 57.037 41.667 0.00 0.00 0.00 2.97
942 960 9.015367 GTAGGGAGAGAATAGCTTTTTCTTTTT 57.985 33.333 11.59 3.48 33.65 1.94
943 961 8.387039 AGTAGGGAGAGAATAGCTTTTTCTTTT 58.613 33.333 11.59 5.39 33.65 2.27
944 962 7.923461 AGTAGGGAGAGAATAGCTTTTTCTTT 58.077 34.615 11.59 7.27 33.65 2.52
945 963 7.503492 AGTAGGGAGAGAATAGCTTTTTCTT 57.497 36.000 11.59 4.25 33.65 2.52
946 964 7.842236 AGTAGTAGGGAGAGAATAGCTTTTTCT 59.158 37.037 10.45 10.45 36.16 2.52
947 965 8.014070 AGTAGTAGGGAGAGAATAGCTTTTTC 57.986 38.462 0.00 0.00 0.00 2.29
948 966 7.620094 TGAGTAGTAGGGAGAGAATAGCTTTTT 59.380 37.037 0.00 0.00 0.00 1.94
949 967 7.126733 TGAGTAGTAGGGAGAGAATAGCTTTT 58.873 38.462 0.00 0.00 0.00 2.27
950 968 6.674573 TGAGTAGTAGGGAGAGAATAGCTTT 58.325 40.000 0.00 0.00 0.00 3.51
951 969 6.268855 TGAGTAGTAGGGAGAGAATAGCTT 57.731 41.667 0.00 0.00 0.00 3.74
952 970 5.915744 TGAGTAGTAGGGAGAGAATAGCT 57.084 43.478 0.00 0.00 0.00 3.32
953 971 6.963083 TTTGAGTAGTAGGGAGAGAATAGC 57.037 41.667 0.00 0.00 0.00 2.97
976 994 7.465960 AGGGAGAGAATAGCTTCTTTCTTTTT 58.534 34.615 0.00 0.00 41.87 1.94
977 995 7.026697 AGGGAGAGAATAGCTTCTTTCTTTT 57.973 36.000 0.00 0.00 41.87 2.27
978 996 6.634889 AGGGAGAGAATAGCTTCTTTCTTT 57.365 37.500 0.00 0.00 41.87 2.52
979 997 6.900743 AGTAGGGAGAGAATAGCTTCTTTCTT 59.099 38.462 0.00 0.00 41.87 2.52
980 998 6.440354 AGTAGGGAGAGAATAGCTTCTTTCT 58.560 40.000 0.00 0.00 41.87 2.52
981 999 6.724893 AGTAGGGAGAGAATAGCTTCTTTC 57.275 41.667 0.00 0.00 41.87 2.62
982 1000 7.359056 AGTAGTAGGGAGAGAATAGCTTCTTT 58.641 38.462 0.00 0.00 41.87 2.52
983 1001 6.918033 AGTAGTAGGGAGAGAATAGCTTCTT 58.082 40.000 0.00 0.00 41.87 2.52
984 1002 6.102027 TGAGTAGTAGGGAGAGAATAGCTTCT 59.898 42.308 0.00 0.00 44.53 2.85
985 1003 6.300703 TGAGTAGTAGGGAGAGAATAGCTTC 58.699 44.000 0.00 0.00 0.00 3.86
986 1004 6.268855 TGAGTAGTAGGGAGAGAATAGCTT 57.731 41.667 0.00 0.00 0.00 3.74
987 1005 5.915744 TGAGTAGTAGGGAGAGAATAGCT 57.084 43.478 0.00 0.00 0.00 3.32
988 1006 6.963083 TTTGAGTAGTAGGGAGAGAATAGC 57.037 41.667 0.00 0.00 0.00 2.97
1011 1029 7.465960 AGGGAGAGAATAGCTTCTTTCTTTTT 58.534 34.615 0.00 0.00 41.87 1.94
1012 1030 7.026697 AGGGAGAGAATAGCTTCTTTCTTTT 57.973 36.000 0.00 0.00 41.87 2.27
1013 1031 6.443527 AGAGGGAGAGAATAGCTTCTTTCTTT 59.556 38.462 0.00 0.00 41.87 2.52
1014 1032 5.963865 AGAGGGAGAGAATAGCTTCTTTCTT 59.036 40.000 0.00 0.00 41.87 2.52
1015 1033 5.528337 AGAGGGAGAGAATAGCTTCTTTCT 58.472 41.667 0.00 0.00 41.87 2.52
1016 1034 5.221441 GGAGAGGGAGAGAATAGCTTCTTTC 60.221 48.000 0.00 0.00 41.87 2.62
1017 1035 4.653801 GGAGAGGGAGAGAATAGCTTCTTT 59.346 45.833 0.00 0.00 41.87 2.52
1018 1036 4.078630 AGGAGAGGGAGAGAATAGCTTCTT 60.079 45.833 0.00 0.00 41.87 2.52
1019 1037 3.467103 AGGAGAGGGAGAGAATAGCTTCT 59.533 47.826 0.00 0.00 44.53 2.85
1020 1038 3.826729 GAGGAGAGGGAGAGAATAGCTTC 59.173 52.174 0.00 0.00 0.00 3.86
1021 1039 3.437931 GGAGGAGAGGGAGAGAATAGCTT 60.438 52.174 0.00 0.00 0.00 3.74
1635 1664 4.232221 TCCGTATGAACTCAACGAACTTC 58.768 43.478 12.75 0.00 38.89 3.01
1684 1713 3.782046 CCTACACAATACAGAACCCTCG 58.218 50.000 0.00 0.00 0.00 4.63
1706 1735 3.426859 CAGAAGTAACAGTCTCAACGCTG 59.573 47.826 0.00 0.00 38.58 5.18
1766 1795 6.328934 TCAATTCAGTAGCCATAACCCAGATA 59.671 38.462 0.00 0.00 0.00 1.98
1873 1902 8.707839 TCCTTTTAAAACGATTTCATGAAATGC 58.292 29.630 32.89 22.72 46.21 3.56
1887 1916 5.509716 ACTTGGAAGGTCCTTTTAAAACG 57.490 39.130 5.36 0.00 37.46 3.60
1927 1956 6.496338 AATATATGATACGCACTCTCGTGA 57.504 37.500 0.00 0.00 43.97 4.35
1931 1960 7.707035 CCCCTTTAATATATGATACGCACTCTC 59.293 40.741 0.00 0.00 0.00 3.20
1932 1961 7.180408 ACCCCTTTAATATATGATACGCACTCT 59.820 37.037 0.00 0.00 0.00 3.24
1933 1962 7.328737 ACCCCTTTAATATATGATACGCACTC 58.671 38.462 0.00 0.00 0.00 3.51
1934 1963 7.253905 ACCCCTTTAATATATGATACGCACT 57.746 36.000 0.00 0.00 0.00 4.40
1976 2005 2.747855 CTCTGGCGGCAGGGTTTC 60.748 66.667 35.20 0.00 0.00 2.78
1977 2006 3.570212 ACTCTGGCGGCAGGGTTT 61.570 61.111 36.51 17.54 30.40 3.27
1978 2007 4.335647 CACTCTGGCGGCAGGGTT 62.336 66.667 39.08 22.80 32.74 4.11
2038 2067 3.643237 TCCAGAGTAGTTGGATGTAGGG 58.357 50.000 0.00 0.00 39.74 3.53
2120 2151 1.896660 GGAGGAGCGTGTTTGGCAA 60.897 57.895 0.00 0.00 0.00 4.52
2133 2164 1.553248 ACGTCGGATTGATTTGGAGGA 59.447 47.619 0.00 0.00 0.00 3.71
2451 2509 6.753107 ACAAAGTTGTACTAAGTGTGCTTT 57.247 33.333 0.00 0.00 40.16 3.51
2514 2601 5.350633 ACGCACACTTAGTACAACTTTACA 58.649 37.500 0.00 0.00 0.00 2.41
2580 2667 9.467258 CACTCTAAATGCATATGGTTAAAATGG 57.533 33.333 0.00 0.00 0.00 3.16
3078 3165 0.618968 AGACGCCCTCATTTCCTCCT 60.619 55.000 0.00 0.00 0.00 3.69
3263 3350 2.342648 GGTCAGTGTCCGGGTGAC 59.657 66.667 14.94 14.94 44.72 3.67
3264 3351 3.299977 CGGTCAGTGTCCGGGTGA 61.300 66.667 19.47 0.00 43.68 4.02
3484 3571 9.982291 AATATATTGCCTAAATATTAACGTGCG 57.018 29.630 0.00 0.00 41.01 5.34
3645 3732 1.813753 GCTCCAATGGCGAGCGTTA 60.814 57.895 0.00 0.00 43.04 3.18
3667 3754 5.069501 ACTAAGTCAATCCAACGACCTAC 57.930 43.478 0.00 0.00 32.33 3.18
3706 4803 3.621419 CCAAAGGGGCAGATCCAAT 57.379 52.632 0.00 0.00 36.21 3.16
3824 4921 9.823647 ATAATGTAAGACATTCCTTGACACTAG 57.176 33.333 8.06 0.00 44.91 2.57
3835 4932 7.227512 CCTTCTGTCCCATAATGTAAGACATTC 59.772 40.741 8.06 0.00 44.91 2.67
3859 4956 8.189460 CAGTTTAAGCTTATCTAACGTACTCCT 58.811 37.037 7.08 0.00 0.00 3.69
4048 5145 5.856126 TGTACACCTTAGCTGAAATTTCG 57.144 39.130 13.34 9.21 0.00 3.46
4093 5190 9.838339 AACATCTTATATTTGTGAAGGGAGTAG 57.162 33.333 0.00 0.00 0.00 2.57
4244 5347 4.292836 AGTGGAAGTCTTAGTACTCCCTCT 59.707 45.833 0.00 0.00 0.00 3.69
4397 5504 5.751586 TCAATTAAGAACCCCATACAGGAC 58.248 41.667 0.00 0.00 41.22 3.85
4745 5852 4.154195 ACCGCTTATTTGTTACTGCAGAAG 59.846 41.667 23.35 11.79 0.00 2.85
4959 6093 7.808218 ACAAATATTTAGGAACGGAGGGAATA 58.192 34.615 0.00 0.00 0.00 1.75
4960 6094 6.669631 ACAAATATTTAGGAACGGAGGGAAT 58.330 36.000 0.00 0.00 0.00 3.01
4961 6095 6.069705 ACAAATATTTAGGAACGGAGGGAA 57.930 37.500 0.00 0.00 0.00 3.97
4962 6096 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4963 6097 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4964 6098 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4965 6099 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4966 6100 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4967 6101 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4984 6118 9.477484 GTAGTCTGTTTGAAATGTCTAGAAAGA 57.523 33.333 0.00 0.00 0.00 2.52
4985 6119 9.261180 TGTAGTCTGTTTGAAATGTCTAGAAAG 57.739 33.333 0.00 0.00 0.00 2.62
4986 6120 9.607988 TTGTAGTCTGTTTGAAATGTCTAGAAA 57.392 29.630 0.00 0.00 0.00 2.52
4987 6121 9.042008 GTTGTAGTCTGTTTGAAATGTCTAGAA 57.958 33.333 0.00 0.00 0.00 2.10
4988 6122 8.201464 TGTTGTAGTCTGTTTGAAATGTCTAGA 58.799 33.333 0.00 0.00 0.00 2.43
4989 6123 8.365399 TGTTGTAGTCTGTTTGAAATGTCTAG 57.635 34.615 0.00 0.00 0.00 2.43
4990 6124 8.902540 ATGTTGTAGTCTGTTTGAAATGTCTA 57.097 30.769 0.00 0.00 0.00 2.59
4991 6125 7.807977 ATGTTGTAGTCTGTTTGAAATGTCT 57.192 32.000 0.00 0.00 0.00 3.41
4992 6126 7.740346 CGTATGTTGTAGTCTGTTTGAAATGTC 59.260 37.037 0.00 0.00 0.00 3.06
4993 6127 7.307751 CCGTATGTTGTAGTCTGTTTGAAATGT 60.308 37.037 0.00 0.00 0.00 2.71
4994 6128 7.015289 CCGTATGTTGTAGTCTGTTTGAAATG 58.985 38.462 0.00 0.00 0.00 2.32
4995 6129 6.932400 TCCGTATGTTGTAGTCTGTTTGAAAT 59.068 34.615 0.00 0.00 0.00 2.17
4996 6130 6.282167 TCCGTATGTTGTAGTCTGTTTGAAA 58.718 36.000 0.00 0.00 0.00 2.69
4997 6131 5.845103 TCCGTATGTTGTAGTCTGTTTGAA 58.155 37.500 0.00 0.00 0.00 2.69
4998 6132 5.456548 TCCGTATGTTGTAGTCTGTTTGA 57.543 39.130 0.00 0.00 0.00 2.69
4999 6133 5.637810 ACATCCGTATGTTGTAGTCTGTTTG 59.362 40.000 0.00 0.00 44.07 2.93
5000 6134 5.790593 ACATCCGTATGTTGTAGTCTGTTT 58.209 37.500 0.00 0.00 44.07 2.83
5001 6135 5.401531 ACATCCGTATGTTGTAGTCTGTT 57.598 39.130 0.00 0.00 44.07 3.16
5002 6136 6.504398 CATACATCCGTATGTTGTAGTCTGT 58.496 40.000 0.00 0.00 46.70 3.41
5003 6137 6.993175 CATACATCCGTATGTTGTAGTCTG 57.007 41.667 0.00 0.00 46.70 3.51
5043 6177 4.154015 CGGAGCAAAATGAGTGTATTCACA 59.846 41.667 5.21 0.00 46.01 3.58
5044 6178 4.154195 ACGGAGCAAAATGAGTGTATTCAC 59.846 41.667 0.00 0.00 44.15 3.18
5045 6179 4.323417 ACGGAGCAAAATGAGTGTATTCA 58.677 39.130 0.00 0.00 0.00 2.57
5046 6180 4.946784 ACGGAGCAAAATGAGTGTATTC 57.053 40.909 0.00 0.00 0.00 1.75
5047 6181 5.880332 ACATACGGAGCAAAATGAGTGTATT 59.120 36.000 0.00 0.00 0.00 1.89
5048 6182 5.428253 ACATACGGAGCAAAATGAGTGTAT 58.572 37.500 0.00 0.00 0.00 2.29
5049 6183 4.827692 ACATACGGAGCAAAATGAGTGTA 58.172 39.130 0.00 0.00 0.00 2.90
5050 6184 3.674997 ACATACGGAGCAAAATGAGTGT 58.325 40.909 0.00 0.00 0.00 3.55
5051 6185 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5052 6186 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5053 6187 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
5054 6188 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5055 6189 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5056 6190 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5057 6191 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5058 6192 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5059 6193 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5060 6194 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5061 6195 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5062 6196 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5063 6197 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5064 6198 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5065 6199 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5066 6200 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5068 6202 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5069 6203 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5070 6204 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5071 6205 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5072 6206 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5073 6207 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5074 6208 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5075 6209 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5076 6210 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5089 6223 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5090 6224 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5091 6225 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5092 6226 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5093 6227 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5094 6228 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5095 6229 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5096 6230 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5097 6231 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5098 6232 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5099 6233 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5100 6234 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5101 6235 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
5102 6236 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
5103 6237 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
5104 6238 7.628501 AAATATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
5105 6239 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
5106 6240 7.786464 AGTAAAATATACTCCCTCCGTTCCTAA 59.214 37.037 0.00 0.00 0.00 2.69
5107 6241 7.232127 CAGTAAAATATACTCCCTCCGTTCCTA 59.768 40.741 0.00 0.00 0.00 2.94
5108 6242 6.041751 CAGTAAAATATACTCCCTCCGTTCCT 59.958 42.308 0.00 0.00 0.00 3.36
5109 6243 6.183360 ACAGTAAAATATACTCCCTCCGTTCC 60.183 42.308 0.00 0.00 0.00 3.62
5110 6244 6.814043 ACAGTAAAATATACTCCCTCCGTTC 58.186 40.000 0.00 0.00 0.00 3.95
5111 6245 6.803366 ACAGTAAAATATACTCCCTCCGTT 57.197 37.500 0.00 0.00 0.00 4.44
5112 6246 6.803366 AACAGTAAAATATACTCCCTCCGT 57.197 37.500 0.00 0.00 0.00 4.69
5113 6247 7.015001 AGGTAACAGTAAAATATACTCCCTCCG 59.985 40.741 0.00 0.00 41.41 4.63
5114 6248 8.148999 CAGGTAACAGTAAAATATACTCCCTCC 58.851 40.741 0.00 0.00 41.41 4.30
5115 6249 8.702819 ACAGGTAACAGTAAAATATACTCCCTC 58.297 37.037 0.00 0.00 41.41 4.30
5116 6250 8.483758 CACAGGTAACAGTAAAATATACTCCCT 58.516 37.037 0.00 0.00 41.41 4.20
5117 6251 8.480501 TCACAGGTAACAGTAAAATATACTCCC 58.519 37.037 0.00 0.00 41.41 4.30
5334 6469 0.465287 CAACAAAGCCAGGCCACTTT 59.535 50.000 8.22 9.16 36.56 2.66
5628 6763 5.770162 GGACTGAAAGGAGAAATCAAAGGAA 59.230 40.000 0.00 0.00 39.30 3.36
5782 6917 3.242673 GGAGCTTCTCATTGAATTGCTCG 60.243 47.826 19.13 0.00 45.85 5.03
6071 7206 3.429410 GCCATAGCAAATGGTCCTCAAAC 60.429 47.826 16.81 0.00 41.17 2.93
6535 7670 1.271840 TACCATTCTTGCGAGGGGCT 61.272 55.000 0.00 0.00 44.05 5.19
6616 7751 1.384525 AGATCTCGTTCCTGTCCTCG 58.615 55.000 0.00 0.00 0.00 4.63
6731 7866 1.875514 GACACAGAATGCAGCACTGAA 59.124 47.619 17.67 0.00 42.53 3.02
6749 7884 3.344515 GGTAACCAAACCTGGAGATGAC 58.655 50.000 0.00 0.00 46.92 3.06
6766 7901 7.125811 AGGAATTACAATCTACTGCAGAGGTAA 59.874 37.037 23.35 17.12 39.42 2.85
6920 8055 5.833406 AACGCATCATTTCATGGACATAA 57.167 34.783 0.00 0.00 0.00 1.90
6946 8081 9.520204 CAGAGTCAAGAAACATGTAAATTTGTT 57.480 29.630 0.00 0.00 0.00 2.83
6955 8090 6.533730 TGATTACCAGAGTCAAGAAACATGT 58.466 36.000 0.00 0.00 0.00 3.21
7008 8143 5.530915 GCAAATGAAGTGGGTACATAGCATA 59.469 40.000 0.00 0.00 0.00 3.14
7072 8207 5.933187 TCTATGTTAGCTTGCAAAAACGA 57.067 34.783 0.00 0.00 0.00 3.85
7099 8234 7.950512 TCCGTCCCATAATATAAGACGTTTTA 58.049 34.615 17.31 0.52 46.62 1.52
7110 8245 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
7298 8454 1.255667 GGCCGACTGGACCTGAACTA 61.256 60.000 5.22 0.00 37.27 2.24
7347 8601 4.988598 CGTTGTCGGCCCACAGCT 62.989 66.667 14.87 0.00 43.05 4.24
7381 8635 1.174078 TAGTCCCTGTCGACGCACAA 61.174 55.000 11.62 0.00 37.85 3.33
7382 8636 1.174078 TTAGTCCCTGTCGACGCACA 61.174 55.000 11.62 0.00 37.85 4.57
7384 8638 0.892755 AATTAGTCCCTGTCGACGCA 59.107 50.000 11.62 0.00 37.85 5.24
7385 8639 1.278238 CAATTAGTCCCTGTCGACGC 58.722 55.000 11.62 0.00 37.85 5.19
7386 8640 1.922570 CCAATTAGTCCCTGTCGACG 58.077 55.000 11.62 5.76 37.85 5.12
7387 8641 1.653151 GCCAATTAGTCCCTGTCGAC 58.347 55.000 9.11 9.11 0.00 4.20
7388 8642 0.539986 GGCCAATTAGTCCCTGTCGA 59.460 55.000 0.00 0.00 0.00 4.20
7510 8840 2.270275 CGCAAACATATGGCGGAAAA 57.730 45.000 14.68 0.00 46.46 2.29
7516 8846 0.173255 AGTTGGCGCAAACATATGGC 59.827 50.000 28.59 0.31 32.21 4.40
7517 8847 2.652941 AAGTTGGCGCAAACATATGG 57.347 45.000 28.59 0.00 32.21 2.74
7518 8848 4.143137 GGAAAAAGTTGGCGCAAACATATG 60.143 41.667 28.59 0.00 32.21 1.78
7519 8849 3.993736 GGAAAAAGTTGGCGCAAACATAT 59.006 39.130 28.59 12.17 32.21 1.78
7520 8850 3.385577 GGAAAAAGTTGGCGCAAACATA 58.614 40.909 28.59 0.00 32.21 2.29
7521 8851 2.209273 GGAAAAAGTTGGCGCAAACAT 58.791 42.857 28.59 15.39 32.21 2.71
7522 8852 1.646189 GGAAAAAGTTGGCGCAAACA 58.354 45.000 28.59 5.48 32.21 2.83
7523 8853 0.934496 GGGAAAAAGTTGGCGCAAAC 59.066 50.000 20.32 20.32 0.00 2.93
7524 8854 0.528684 CGGGAAAAAGTTGGCGCAAA 60.529 50.000 10.83 0.00 0.00 3.68
7525 8855 1.066587 CGGGAAAAAGTTGGCGCAA 59.933 52.632 10.83 0.00 0.00 4.85
7529 8859 1.300620 GTGGCGGGAAAAAGTTGGC 60.301 57.895 0.00 0.00 0.00 4.52
7534 8864 1.740332 AAACGGGTGGCGGGAAAAAG 61.740 55.000 0.00 0.00 0.00 2.27
7535 8865 1.328430 AAAACGGGTGGCGGGAAAAA 61.328 50.000 0.00 0.00 0.00 1.94
7571 8973 4.471904 ACATATGGCGAGAAAGAGTTGA 57.528 40.909 7.80 0.00 0.00 3.18
7652 9056 1.134818 AGAGTTGGCGCGAACATATGA 60.135 47.619 32.25 0.00 0.00 2.15
7679 9083 0.981183 AGTATGGCGGAAACAGGTGA 59.019 50.000 0.00 0.00 0.00 4.02
7684 9088 0.036164 ACTGCAGTATGGCGGAAACA 59.964 50.000 20.16 0.00 42.91 2.83
7744 9190 3.034635 GCTTATCCTCCTGTCTGAAGGA 58.965 50.000 0.00 0.00 44.35 3.36
7841 9289 3.388024 TGAAATCGGTAGCTAGCCTCATT 59.612 43.478 16.98 9.84 0.00 2.57
7842 9290 2.965831 TGAAATCGGTAGCTAGCCTCAT 59.034 45.455 16.98 4.34 0.00 2.90
7884 9332 1.589630 CGGTGAGTTCGTCCCATGA 59.410 57.895 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.