Multiple sequence alignment - TraesCS5A01G105400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G105400 chr5A 100.000 7482 0 0 1 7482 169809896 169817377 0.000000e+00 13817.0
1 TraesCS5A01G105400 chr5A 98.072 778 7 1 1 778 598961479 598962248 0.000000e+00 1347.0
2 TraesCS5A01G105400 chr5A 96.658 778 11 2 1 778 219305649 219304887 0.000000e+00 1279.0
3 TraesCS5A01G105400 chr2A 97.266 2341 53 6 2938 5271 578390480 578392816 0.000000e+00 3958.0
4 TraesCS5A01G105400 chr2A 97.216 2335 51 6 2944 5271 179283028 179280701 0.000000e+00 3940.0
5 TraesCS5A01G105400 chr2A 97.133 2337 56 6 2942 5271 101854859 101857191 0.000000e+00 3934.0
6 TraesCS5A01G105400 chr2A 97.090 2337 57 6 2942 5271 421219279 421216947 0.000000e+00 3928.0
7 TraesCS5A01G105400 chr2A 89.474 133 11 3 5745 5875 389220791 389220922 1.670000e-36 165.0
8 TraesCS5A01G105400 chr2D 97.138 2341 56 6 2938 5271 106332701 106330365 0.000000e+00 3941.0
9 TraesCS5A01G105400 chr2D 86.733 799 49 19 24 793 484798574 484797804 0.000000e+00 835.0
10 TraesCS5A01G105400 chr2D 86.262 626 46 21 24 621 478675749 478675136 1.760000e-180 643.0
11 TraesCS5A01G105400 chr2D 94.017 117 6 1 5759 5875 610294534 610294419 7.720000e-40 176.0
12 TraesCS5A01G105400 chr2D 92.500 120 7 1 5763 5880 489410187 489410068 3.590000e-38 171.0
13 TraesCS5A01G105400 chr3A 97.056 2344 56 7 2937 5271 217717330 217719669 0.000000e+00 3934.0
14 TraesCS5A01G105400 chr1D 97.095 2341 55 7 2938 5271 94050654 94052988 0.000000e+00 3934.0
15 TraesCS5A01G105400 chr1D 91.803 122 10 0 5754 5875 408872528 408872407 3.590000e-38 171.0
16 TraesCS5A01G105400 chr1D 74.394 289 47 17 521 793 334213528 334213251 1.720000e-16 99.0
17 TraesCS5A01G105400 chr6A 97.095 2341 53 8 2938 5271 58015257 58017589 0.000000e+00 3932.0
18 TraesCS5A01G105400 chr6A 82.540 189 10 11 418 585 576403642 576403828 2.180000e-30 145.0
19 TraesCS5A01G105400 chr6A 82.011 189 11 11 418 585 576235803 576235989 1.010000e-28 139.0
20 TraesCS5A01G105400 chr6A 81.818 121 21 1 673 793 590675765 590675884 4.780000e-17 100.0
21 TraesCS5A01G105400 chr6A 91.228 57 3 2 417 473 474883369 474883423 8.050000e-10 76.8
22 TraesCS5A01G105400 chr7A 97.053 2341 57 7 2938 5271 319591997 319589662 0.000000e+00 3930.0
23 TraesCS5A01G105400 chr7A 78.846 156 33 0 328 483 109340421 109340576 1.030000e-18 106.0
24 TraesCS5A01G105400 chr5B 94.402 2251 58 34 5268 7482 146917074 146914856 0.000000e+00 3397.0
25 TraesCS5A01G105400 chr5B 93.466 2158 63 12 820 2931 146919196 146917071 0.000000e+00 3133.0
26 TraesCS5A01G105400 chr5B 96.950 754 8 3 1 754 461869298 461868560 0.000000e+00 1251.0
27 TraesCS5A01G105400 chr5B 93.966 116 7 0 5760 5875 6886394 6886509 7.720000e-40 176.0
28 TraesCS5A01G105400 chr5B 89.286 84 9 0 711 794 44977523 44977440 1.030000e-18 106.0
29 TraesCS5A01G105400 chr5B 92.308 65 1 2 731 793 13287223 13287285 1.030000e-13 89.8
30 TraesCS5A01G105400 chr5D 93.678 2009 81 27 857 2839 135243793 135241805 0.000000e+00 2964.0
31 TraesCS5A01G105400 chr5D 93.530 1623 54 16 5909 7482 135241322 135239702 0.000000e+00 2368.0
32 TraesCS5A01G105400 chr5D 92.902 479 16 8 5273 5738 135241789 135241316 0.000000e+00 680.0
33 TraesCS5A01G105400 chr5D 88.333 60 7 0 708 767 10490095 10490154 1.040000e-08 73.1
34 TraesCS5A01G105400 chr5D 100.000 36 0 0 5964 5999 489897186 489897221 4.840000e-07 67.6
35 TraesCS5A01G105400 chr5D 97.368 38 1 0 5964 6001 366007904 366007867 1.740000e-06 65.8
36 TraesCS5A01G105400 chr6B 97.494 798 5 3 1 793 705171134 705170347 0.000000e+00 1349.0
37 TraesCS5A01G105400 chr6B 97.922 770 7 2 1 770 720467303 720466543 0.000000e+00 1325.0
38 TraesCS5A01G105400 chr6B 96.482 796 12 4 1 796 653298199 653297420 0.000000e+00 1301.0
39 TraesCS5A01G105400 chr6B 90.323 93 5 4 505 597 164816939 164816851 1.320000e-22 119.0
40 TraesCS5A01G105400 chr6B 88.333 60 3 4 5964 6021 687848092 687848035 1.350000e-07 69.4
41 TraesCS5A01G105400 chr2B 96.338 792 8 5 1 790 789679785 789680557 0.000000e+00 1282.0
42 TraesCS5A01G105400 chr2B 83.621 116 15 4 679 793 316748118 316748230 1.030000e-18 106.0
43 TraesCS5A01G105400 chr2B 91.667 48 2 2 5964 6009 726693335 726693288 1.740000e-06 65.8
44 TraesCS5A01G105400 chr7B 82.740 759 85 32 1 740 54219279 54218548 1.060000e-177 634.0
45 TraesCS5A01G105400 chr7B 92.562 121 6 3 5763 5880 444184129 444184009 3.590000e-38 171.0
46 TraesCS5A01G105400 chr7B 80.597 134 22 4 657 788 32562574 32562705 4.780000e-17 100.0
47 TraesCS5A01G105400 chr7B 97.143 35 1 0 5964 5998 529956305 529956339 8.110000e-05 60.2
48 TraesCS5A01G105400 chr4B 82.305 486 71 11 302 778 549931837 549932316 2.510000e-109 407.0
49 TraesCS5A01G105400 chr4B 92.941 85 4 2 513 597 659668817 659668735 1.020000e-23 122.0
50 TraesCS5A01G105400 chr4B 84.524 84 12 1 710 793 489159142 489159060 1.730000e-11 82.4
51 TraesCS5A01G105400 chr4D 81.100 291 31 16 505 778 363568430 363568147 2.120000e-50 211.0
52 TraesCS5A01G105400 chr3B 92.623 122 7 1 5756 5875 798492214 798492093 2.780000e-39 174.0
53 TraesCS5A01G105400 chr3B 91.667 48 2 2 5964 6009 612032912 612032865 1.740000e-06 65.8
54 TraesCS5A01G105400 chr3B 97.143 35 1 0 5964 5998 725843501 725843535 8.110000e-05 60.2
55 TraesCS5A01G105400 chr6D 90.152 132 12 1 5745 5875 366701087 366701218 3.590000e-38 171.0
56 TraesCS5A01G105400 chr6D 92.308 91 6 1 507 597 60311226 60311315 2.190000e-25 128.0
57 TraesCS5A01G105400 chr1B 83.051 118 19 1 677 793 26717806 26717923 1.030000e-18 106.0
58 TraesCS5A01G105400 chr1B 87.640 89 7 3 709 794 198754701 198754614 4.780000e-17 100.0
59 TraesCS5A01G105400 chr1B 81.915 94 13 4 685 776 89364266 89364175 8.050000e-10 76.8
60 TraesCS5A01G105400 chrUn 87.356 87 11 0 707 793 221035999 221035913 4.780000e-17 100.0
61 TraesCS5A01G105400 chr1A 81.250 112 18 3 683 793 60575719 60575828 3.720000e-13 87.9
62 TraesCS5A01G105400 chr1A 88.136 59 6 1 735 793 453788196 453788253 1.350000e-07 69.4
63 TraesCS5A01G105400 chr1A 100.000 29 0 0 758 786 319190085 319190113 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G105400 chr5A 169809896 169817377 7481 False 13817 13817 100.000 1 7482 1 chr5A.!!$F1 7481
1 TraesCS5A01G105400 chr5A 598961479 598962248 769 False 1347 1347 98.072 1 778 1 chr5A.!!$F2 777
2 TraesCS5A01G105400 chr5A 219304887 219305649 762 True 1279 1279 96.658 1 778 1 chr5A.!!$R1 777
3 TraesCS5A01G105400 chr2A 578390480 578392816 2336 False 3958 3958 97.266 2938 5271 1 chr2A.!!$F3 2333
4 TraesCS5A01G105400 chr2A 179280701 179283028 2327 True 3940 3940 97.216 2944 5271 1 chr2A.!!$R1 2327
5 TraesCS5A01G105400 chr2A 101854859 101857191 2332 False 3934 3934 97.133 2942 5271 1 chr2A.!!$F1 2329
6 TraesCS5A01G105400 chr2A 421216947 421219279 2332 True 3928 3928 97.090 2942 5271 1 chr2A.!!$R2 2329
7 TraesCS5A01G105400 chr2D 106330365 106332701 2336 True 3941 3941 97.138 2938 5271 1 chr2D.!!$R1 2333
8 TraesCS5A01G105400 chr2D 484797804 484798574 770 True 835 835 86.733 24 793 1 chr2D.!!$R3 769
9 TraesCS5A01G105400 chr2D 478675136 478675749 613 True 643 643 86.262 24 621 1 chr2D.!!$R2 597
10 TraesCS5A01G105400 chr3A 217717330 217719669 2339 False 3934 3934 97.056 2937 5271 1 chr3A.!!$F1 2334
11 TraesCS5A01G105400 chr1D 94050654 94052988 2334 False 3934 3934 97.095 2938 5271 1 chr1D.!!$F1 2333
12 TraesCS5A01G105400 chr6A 58015257 58017589 2332 False 3932 3932 97.095 2938 5271 1 chr6A.!!$F1 2333
13 TraesCS5A01G105400 chr7A 319589662 319591997 2335 True 3930 3930 97.053 2938 5271 1 chr7A.!!$R1 2333
14 TraesCS5A01G105400 chr5B 146914856 146919196 4340 True 3265 3397 93.934 820 7482 2 chr5B.!!$R3 6662
15 TraesCS5A01G105400 chr5B 461868560 461869298 738 True 1251 1251 96.950 1 754 1 chr5B.!!$R2 753
16 TraesCS5A01G105400 chr5D 135239702 135243793 4091 True 2004 2964 93.370 857 7482 3 chr5D.!!$R2 6625
17 TraesCS5A01G105400 chr6B 705170347 705171134 787 True 1349 1349 97.494 1 793 1 chr6B.!!$R4 792
18 TraesCS5A01G105400 chr6B 720466543 720467303 760 True 1325 1325 97.922 1 770 1 chr6B.!!$R5 769
19 TraesCS5A01G105400 chr6B 653297420 653298199 779 True 1301 1301 96.482 1 796 1 chr6B.!!$R2 795
20 TraesCS5A01G105400 chr2B 789679785 789680557 772 False 1282 1282 96.338 1 790 1 chr2B.!!$F2 789
21 TraesCS5A01G105400 chr7B 54218548 54219279 731 True 634 634 82.740 1 740 1 chr7B.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 759 0.028770 AAAACACCGACGACGTACGA 59.971 50.000 24.41 0.00 45.77 3.43 F
763 780 0.107703 CAGGAGCCATCGGTGCTTTA 60.108 55.000 0.00 0.00 39.69 1.85 F
975 998 0.178990 GCCACAGAAAACCCAGACCT 60.179 55.000 0.00 0.00 0.00 3.85 F
977 1000 0.954452 CACAGAAAACCCAGACCTGC 59.046 55.000 0.00 0.00 0.00 4.85 F
1389 1449 1.359848 CGAATCCTGGAACGGTTCAG 58.640 55.000 21.36 0.12 0.00 3.02 F
3038 3106 1.376424 AACTCATGGCTCTGGCACG 60.376 57.895 0.00 0.00 41.84 5.34 F
4731 4811 0.037975 TTCCTTCGTGCCTAACCGTC 60.038 55.000 0.00 0.00 0.00 4.79 F
5125 5330 0.609151 TTATCCCGCTGGACACGAAA 59.391 50.000 0.00 0.00 45.58 3.46 F
5650 6011 0.322456 GTGCTGGCATCCCAACTACA 60.322 55.000 0.00 0.00 41.58 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 2034 1.432270 GCCATGCGCAGAGTCCTAAC 61.432 60.000 18.32 0.00 37.47 2.34 R
2289 2355 3.935828 GTCATAGAAGCAAGTCCCAAGAC 59.064 47.826 0.00 0.00 43.89 3.01 R
2823 2891 2.699954 ACTGCACAGCTGGTATACAAC 58.300 47.619 19.93 0.00 0.00 3.32 R
2933 3001 4.505313 TGTTGTTGTTGTTGTTGTAGCA 57.495 36.364 0.00 0.00 0.00 3.49 R
3148 3216 0.537188 GCGGAGAATGTCAAGAGGGA 59.463 55.000 0.00 0.00 0.00 4.20 R
4950 5030 0.037590 TGCATTCGTAAGGTGGCCTT 59.962 50.000 3.32 5.69 46.63 4.35 R
5631 5992 0.322456 TGTAGTTGGGATGCCAGCAC 60.322 55.000 21.74 16.59 0.00 4.40 R
6165 6571 2.024941 GGGATTGTCTCACCTGGGAATT 60.025 50.000 0.00 0.00 0.00 2.17 R
7154 7577 1.112315 CGCAGTCTCCCTGGCTCTAT 61.112 60.000 0.00 0.00 41.81 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 276 6.014669 GCTCTCTCTTATCTCTCTCTCTCTCT 60.015 46.154 0.00 0.00 0.00 3.10
260 277 7.531857 TCTCTCTTATCTCTCTCTCTCTCTC 57.468 44.000 0.00 0.00 0.00 3.20
261 278 7.301420 TCTCTCTTATCTCTCTCTCTCTCTCT 58.699 42.308 0.00 0.00 0.00 3.10
262 279 7.450014 TCTCTCTTATCTCTCTCTCTCTCTCTC 59.550 44.444 0.00 0.00 0.00 3.20
263 280 7.301420 TCTCTTATCTCTCTCTCTCTCTCTCT 58.699 42.308 0.00 0.00 0.00 3.10
264 281 7.450014 TCTCTTATCTCTCTCTCTCTCTCTCTC 59.550 44.444 0.00 0.00 0.00 3.20
265 282 7.301420 TCTTATCTCTCTCTCTCTCTCTCTCT 58.699 42.308 0.00 0.00 0.00 3.10
266 283 7.450014 TCTTATCTCTCTCTCTCTCTCTCTCTC 59.550 44.444 0.00 0.00 0.00 3.20
267 284 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
268 285 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
269 286 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
270 287 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
271 288 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
272 289 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
639 656 7.504238 TGAATACCGCAAATTACAGGGATTTAT 59.496 33.333 5.31 0.00 37.42 1.40
640 657 7.833285 ATACCGCAAATTACAGGGATTTATT 57.167 32.000 0.00 0.00 0.00 1.40
641 658 6.538945 ACCGCAAATTACAGGGATTTATTT 57.461 33.333 0.00 0.00 0.00 1.40
642 659 6.337356 ACCGCAAATTACAGGGATTTATTTG 58.663 36.000 0.00 0.00 38.55 2.32
643 660 6.071051 ACCGCAAATTACAGGGATTTATTTGT 60.071 34.615 0.00 0.00 38.07 2.83
644 661 7.122948 ACCGCAAATTACAGGGATTTATTTGTA 59.877 33.333 0.00 0.00 38.07 2.41
645 662 7.976734 CCGCAAATTACAGGGATTTATTTGTAA 59.023 33.333 0.00 0.00 39.49 2.41
646 663 9.360093 CGCAAATTACAGGGATTTATTTGTAAA 57.640 29.630 0.00 0.00 38.88 2.01
653 670 8.706322 ACAGGGATTTATTTGTAAAGTTGTCT 57.294 30.769 0.00 0.00 0.00 3.41
654 671 9.802039 ACAGGGATTTATTTGTAAAGTTGTCTA 57.198 29.630 0.00 0.00 0.00 2.59
657 674 9.550811 GGGATTTATTTGTAAAGTTGTCTAACG 57.449 33.333 0.00 0.00 41.71 3.18
662 679 9.635632 TTATTTGTAAAGTTGTCTAACGAAACG 57.364 29.630 0.00 0.00 41.71 3.60
663 680 6.645700 TTGTAAAGTTGTCTAACGAAACGT 57.354 33.333 0.00 0.00 43.97 3.99
675 692 3.685836 ACGAAACGTTTTTCCCTTCAG 57.314 42.857 15.89 0.40 36.35 3.02
676 693 3.272581 ACGAAACGTTTTTCCCTTCAGA 58.727 40.909 15.89 0.00 36.35 3.27
677 694 3.690628 ACGAAACGTTTTTCCCTTCAGAA 59.309 39.130 15.89 0.00 36.35 3.02
678 695 4.201881 ACGAAACGTTTTTCCCTTCAGAAG 60.202 41.667 15.89 2.78 36.35 2.85
679 696 4.034742 CGAAACGTTTTTCCCTTCAGAAGA 59.965 41.667 15.89 0.00 38.35 2.87
680 697 5.500645 AAACGTTTTTCCCTTCAGAAGAG 57.499 39.130 12.14 0.00 0.00 2.85
681 698 3.477530 ACGTTTTTCCCTTCAGAAGAGG 58.522 45.455 12.14 10.97 0.00 3.69
682 699 3.135895 ACGTTTTTCCCTTCAGAAGAGGA 59.864 43.478 12.14 13.03 0.00 3.71
683 700 3.748568 CGTTTTTCCCTTCAGAAGAGGAG 59.251 47.826 12.14 1.62 32.09 3.69
684 701 4.720046 GTTTTTCCCTTCAGAAGAGGAGT 58.280 43.478 12.14 0.00 32.09 3.85
685 702 4.357918 TTTTCCCTTCAGAAGAGGAGTG 57.642 45.455 12.14 0.00 32.09 3.51
686 703 1.270907 TCCCTTCAGAAGAGGAGTGC 58.729 55.000 12.14 0.00 0.00 4.40
687 704 0.108424 CCCTTCAGAAGAGGAGTGCG 60.108 60.000 12.14 0.00 0.00 5.34
688 705 0.108424 CCTTCAGAAGAGGAGTGCGG 60.108 60.000 12.14 0.00 0.00 5.69
689 706 0.891373 CTTCAGAAGAGGAGTGCGGA 59.109 55.000 3.82 0.00 0.00 5.54
690 707 1.480137 CTTCAGAAGAGGAGTGCGGAT 59.520 52.381 3.82 0.00 0.00 4.18
691 708 1.561643 TCAGAAGAGGAGTGCGGATT 58.438 50.000 0.00 0.00 0.00 3.01
692 709 1.205655 TCAGAAGAGGAGTGCGGATTG 59.794 52.381 0.00 0.00 0.00 2.67
693 710 1.205655 CAGAAGAGGAGTGCGGATTGA 59.794 52.381 0.00 0.00 0.00 2.57
694 711 1.902508 AGAAGAGGAGTGCGGATTGAA 59.097 47.619 0.00 0.00 0.00 2.69
695 712 2.503356 AGAAGAGGAGTGCGGATTGAAT 59.497 45.455 0.00 0.00 0.00 2.57
696 713 3.706594 AGAAGAGGAGTGCGGATTGAATA 59.293 43.478 0.00 0.00 0.00 1.75
697 714 4.346418 AGAAGAGGAGTGCGGATTGAATAT 59.654 41.667 0.00 0.00 0.00 1.28
698 715 4.000331 AGAGGAGTGCGGATTGAATATG 58.000 45.455 0.00 0.00 0.00 1.78
699 716 3.643320 AGAGGAGTGCGGATTGAATATGA 59.357 43.478 0.00 0.00 0.00 2.15
700 717 4.101585 AGAGGAGTGCGGATTGAATATGAA 59.898 41.667 0.00 0.00 0.00 2.57
701 718 4.384056 AGGAGTGCGGATTGAATATGAAG 58.616 43.478 0.00 0.00 0.00 3.02
702 719 4.101585 AGGAGTGCGGATTGAATATGAAGA 59.898 41.667 0.00 0.00 0.00 2.87
703 720 4.816385 GGAGTGCGGATTGAATATGAAGAA 59.184 41.667 0.00 0.00 0.00 2.52
704 721 5.471456 GGAGTGCGGATTGAATATGAAGAAT 59.529 40.000 0.00 0.00 0.00 2.40
705 722 6.016777 GGAGTGCGGATTGAATATGAAGAATT 60.017 38.462 0.00 0.00 0.00 2.17
706 723 7.173218 GGAGTGCGGATTGAATATGAAGAATTA 59.827 37.037 0.00 0.00 0.00 1.40
707 724 7.865707 AGTGCGGATTGAATATGAAGAATTAC 58.134 34.615 0.00 0.00 0.00 1.89
708 725 7.498900 AGTGCGGATTGAATATGAAGAATTACA 59.501 33.333 0.00 0.00 0.00 2.41
709 726 7.800380 GTGCGGATTGAATATGAAGAATTACAG 59.200 37.037 0.00 0.00 0.00 2.74
710 727 7.041167 TGCGGATTGAATATGAAGAATTACAGG 60.041 37.037 0.00 0.00 0.00 4.00
711 728 7.573843 GCGGATTGAATATGAAGAATTACAGGG 60.574 40.741 0.00 0.00 0.00 4.45
712 729 7.661437 CGGATTGAATATGAAGAATTACAGGGA 59.339 37.037 0.00 0.00 0.00 4.20
713 730 8.787852 GGATTGAATATGAAGAATTACAGGGAC 58.212 37.037 0.00 0.00 0.00 4.46
714 731 9.566432 GATTGAATATGAAGAATTACAGGGACT 57.434 33.333 0.00 0.00 43.88 3.85
715 732 9.927081 ATTGAATATGAAGAATTACAGGGACTT 57.073 29.630 0.00 0.00 34.60 3.01
716 733 9.753674 TTGAATATGAAGAATTACAGGGACTTT 57.246 29.630 0.00 0.00 34.60 2.66
717 734 9.753674 TGAATATGAAGAATTACAGGGACTTTT 57.246 29.630 0.00 0.00 34.60 2.27
719 736 9.981460 AATATGAAGAATTACAGGGACTTTTCT 57.019 29.630 0.00 0.00 34.60 2.52
720 737 7.693969 ATGAAGAATTACAGGGACTTTTCTG 57.306 36.000 0.00 0.00 34.60 3.02
721 738 6.601332 TGAAGAATTACAGGGACTTTTCTGT 58.399 36.000 0.00 0.00 45.10 3.41
722 739 7.741785 TGAAGAATTACAGGGACTTTTCTGTA 58.258 34.615 0.00 0.00 43.19 2.74
728 745 7.941431 TTACAGGGACTTTTCTGTAAAAACA 57.059 32.000 11.88 0.00 46.82 2.83
729 746 6.203808 ACAGGGACTTTTCTGTAAAAACAC 57.796 37.500 0.00 0.00 41.81 3.32
730 747 5.126545 ACAGGGACTTTTCTGTAAAAACACC 59.873 40.000 0.00 0.00 41.81 4.16
731 748 4.337274 AGGGACTTTTCTGTAAAAACACCG 59.663 41.667 0.00 0.00 34.26 4.94
732 749 4.336153 GGGACTTTTCTGTAAAAACACCGA 59.664 41.667 0.00 0.00 34.26 4.69
733 750 5.268544 GGACTTTTCTGTAAAAACACCGAC 58.731 41.667 0.00 0.00 34.26 4.79
734 751 4.900664 ACTTTTCTGTAAAAACACCGACG 58.099 39.130 0.00 0.00 34.26 5.12
735 752 4.630940 ACTTTTCTGTAAAAACACCGACGA 59.369 37.500 0.00 0.00 34.26 4.20
736 753 4.519191 TTTCTGTAAAAACACCGACGAC 57.481 40.909 0.00 0.00 0.00 4.34
737 754 2.118683 TCTGTAAAAACACCGACGACG 58.881 47.619 0.00 0.00 39.43 5.12
738 755 1.854126 CTGTAAAAACACCGACGACGT 59.146 47.619 0.00 0.00 37.88 4.34
739 756 3.042189 CTGTAAAAACACCGACGACGTA 58.958 45.455 0.00 0.00 37.88 3.57
740 757 2.786578 TGTAAAAACACCGACGACGTAC 59.213 45.455 0.00 1.24 37.88 3.67
742 759 0.028770 AAAACACCGACGACGTACGA 59.971 50.000 24.41 0.00 45.77 3.43
743 760 0.657368 AAACACCGACGACGTACGAC 60.657 55.000 24.41 15.62 45.77 4.34
744 761 2.202222 CACCGACGACGTACGACC 60.202 66.667 24.41 12.06 45.77 4.79
745 762 2.664851 ACCGACGACGTACGACCA 60.665 61.111 24.41 0.00 45.77 4.02
746 763 2.097160 CCGACGACGTACGACCAG 59.903 66.667 24.41 11.88 45.77 4.00
747 764 2.097160 CGACGACGTACGACCAGG 59.903 66.667 24.41 5.92 45.77 4.45
748 765 2.382746 CGACGACGTACGACCAGGA 61.383 63.158 24.41 0.00 45.77 3.86
749 766 1.423056 GACGACGTACGACCAGGAG 59.577 63.158 24.41 5.15 45.77 3.69
750 767 2.099831 CGACGTACGACCAGGAGC 59.900 66.667 24.41 0.00 45.77 4.70
751 768 2.488820 GACGTACGACCAGGAGCC 59.511 66.667 24.41 0.00 0.00 4.70
752 769 2.282674 ACGTACGACCAGGAGCCA 60.283 61.111 24.41 0.00 0.00 4.75
753 770 1.664321 GACGTACGACCAGGAGCCAT 61.664 60.000 24.41 0.00 0.00 4.40
754 771 1.065928 CGTACGACCAGGAGCCATC 59.934 63.158 10.44 0.00 0.00 3.51
755 772 1.065928 GTACGACCAGGAGCCATCG 59.934 63.158 0.00 0.00 40.39 3.84
756 773 2.125326 TACGACCAGGAGCCATCGG 61.125 63.158 0.00 1.66 38.88 4.18
757 774 2.849096 TACGACCAGGAGCCATCGGT 62.849 60.000 0.00 4.44 38.88 4.69
758 775 2.187946 GACCAGGAGCCATCGGTG 59.812 66.667 0.00 0.00 0.00 4.94
759 776 4.101448 ACCAGGAGCCATCGGTGC 62.101 66.667 0.00 0.00 0.00 5.01
760 777 3.790437 CCAGGAGCCATCGGTGCT 61.790 66.667 0.00 0.00 43.03 4.40
761 778 2.270205 CAGGAGCCATCGGTGCTT 59.730 61.111 0.00 0.00 39.69 3.91
762 779 1.377725 CAGGAGCCATCGGTGCTTT 60.378 57.895 0.00 0.00 39.69 3.51
763 780 0.107703 CAGGAGCCATCGGTGCTTTA 60.108 55.000 0.00 0.00 39.69 1.85
764 781 0.839946 AGGAGCCATCGGTGCTTTAT 59.160 50.000 0.00 0.00 39.69 1.40
765 782 1.212935 AGGAGCCATCGGTGCTTTATT 59.787 47.619 0.00 0.00 39.69 1.40
766 783 2.438021 AGGAGCCATCGGTGCTTTATTA 59.562 45.455 0.00 0.00 39.69 0.98
767 784 2.808543 GGAGCCATCGGTGCTTTATTAG 59.191 50.000 0.00 0.00 39.69 1.73
768 785 3.467803 GAGCCATCGGTGCTTTATTAGT 58.532 45.455 0.00 0.00 39.69 2.24
769 786 4.502604 GGAGCCATCGGTGCTTTATTAGTA 60.503 45.833 0.00 0.00 39.69 1.82
770 787 4.632153 AGCCATCGGTGCTTTATTAGTAG 58.368 43.478 0.00 0.00 34.87 2.57
771 788 3.746492 GCCATCGGTGCTTTATTAGTAGG 59.254 47.826 0.00 0.00 0.00 3.18
772 789 4.742743 GCCATCGGTGCTTTATTAGTAGGT 60.743 45.833 0.00 0.00 0.00 3.08
773 790 5.510179 GCCATCGGTGCTTTATTAGTAGGTA 60.510 44.000 0.00 0.00 0.00 3.08
774 791 6.518493 CCATCGGTGCTTTATTAGTAGGTAA 58.482 40.000 0.00 0.00 0.00 2.85
775 792 6.987992 CCATCGGTGCTTTATTAGTAGGTAAA 59.012 38.462 0.00 0.00 0.00 2.01
776 793 7.170998 CCATCGGTGCTTTATTAGTAGGTAAAG 59.829 40.741 0.00 10.51 39.66 1.85
777 794 7.408756 TCGGTGCTTTATTAGTAGGTAAAGA 57.591 36.000 15.74 4.58 39.24 2.52
778 795 7.486647 TCGGTGCTTTATTAGTAGGTAAAGAG 58.513 38.462 15.74 7.77 39.24 2.85
779 796 6.700520 CGGTGCTTTATTAGTAGGTAAAGAGG 59.299 42.308 15.74 3.91 39.24 3.69
780 797 7.563020 GGTGCTTTATTAGTAGGTAAAGAGGT 58.437 38.462 15.74 0.00 39.24 3.85
781 798 8.699130 GGTGCTTTATTAGTAGGTAAAGAGGTA 58.301 37.037 15.74 2.96 39.24 3.08
800 817 9.825109 AAGAGGTAAAGATAAAGATTAGAGCAC 57.175 33.333 0.00 0.00 0.00 4.40
801 818 8.425703 AGAGGTAAAGATAAAGATTAGAGCACC 58.574 37.037 0.00 0.00 0.00 5.01
802 819 8.325477 AGGTAAAGATAAAGATTAGAGCACCT 57.675 34.615 0.00 0.00 0.00 4.00
803 820 9.435570 AGGTAAAGATAAAGATTAGAGCACCTA 57.564 33.333 0.00 0.00 0.00 3.08
812 829 8.870075 AAAGATTAGAGCACCTAAAATCTGTT 57.130 30.769 3.25 0.00 40.45 3.16
813 830 7.856145 AGATTAGAGCACCTAAAATCTGTTG 57.144 36.000 3.25 0.00 40.45 3.33
814 831 7.398024 AGATTAGAGCACCTAAAATCTGTTGT 58.602 34.615 3.25 0.00 40.45 3.32
815 832 6.801539 TTAGAGCACCTAAAATCTGTTGTG 57.198 37.500 0.00 0.00 34.59 3.33
816 833 4.074970 AGAGCACCTAAAATCTGTTGTGG 58.925 43.478 0.00 0.00 0.00 4.17
817 834 2.558359 AGCACCTAAAATCTGTTGTGGC 59.442 45.455 0.00 0.00 0.00 5.01
818 835 2.668279 GCACCTAAAATCTGTTGTGGCG 60.668 50.000 0.00 0.00 0.00 5.69
822 839 1.452145 AAAATCTGTTGTGGCGCGGT 61.452 50.000 8.83 0.00 0.00 5.68
825 842 4.980903 CTGTTGTGGCGCGGTTGC 62.981 66.667 8.83 0.00 37.91 4.17
833 850 4.107051 GCGCGGTTGCAGATGCTT 62.107 61.111 8.83 0.00 42.97 3.91
847 864 7.545362 TGCAGATGCTTTTAGATTTAGACTC 57.455 36.000 6.35 0.00 42.66 3.36
850 867 7.254727 GCAGATGCTTTTAGATTTAGACTCTGG 60.255 40.741 0.00 0.00 38.21 3.86
975 998 0.178990 GCCACAGAAAACCCAGACCT 60.179 55.000 0.00 0.00 0.00 3.85
976 999 1.609208 CCACAGAAAACCCAGACCTG 58.391 55.000 0.00 0.00 0.00 4.00
977 1000 0.954452 CACAGAAAACCCAGACCTGC 59.046 55.000 0.00 0.00 0.00 4.85
1194 1229 1.690010 TCACCCCTACCACTAGGAGA 58.310 55.000 0.00 0.00 42.34 3.71
1222 1257 2.519119 AATCGGGTCCGGGGTAGTCA 62.519 60.000 9.68 0.00 40.25 3.41
1361 1396 4.603131 TCTCCAAATCTTCATTTCCTGGG 58.397 43.478 0.00 0.00 28.97 4.45
1389 1449 1.359848 CGAATCCTGGAACGGTTCAG 58.640 55.000 21.36 0.12 0.00 3.02
1474 1534 6.376177 TCGTATGTAATCATGGTCGTGATAC 58.624 40.000 6.15 6.15 37.85 2.24
1495 1555 7.600752 TGATACATCATGTCGTTGTTCTGTTTA 59.399 33.333 0.00 0.00 0.00 2.01
1652 1715 7.089770 GAGTTGATCCAAATTCTAAACCTCC 57.910 40.000 0.00 0.00 0.00 4.30
1732 1797 6.716628 AGGAATTTTTGACTTCAGATGCTACA 59.283 34.615 0.00 0.00 0.00 2.74
1823 1888 5.906113 TGTAATTGATTGCATTTACCGGT 57.094 34.783 13.98 13.98 38.85 5.28
1853 1918 5.822519 AGTTCATGTCAGAAACTAAGTTGCA 59.177 36.000 0.00 0.00 0.00 4.08
1868 1933 4.127566 AGTTGCAATTGACTGCTGTTTT 57.872 36.364 10.34 0.00 43.07 2.43
1969 2034 2.548057 GCTGAGGAGTCACTCGATCTAG 59.452 54.545 9.42 6.86 40.39 2.43
2179 2244 9.319143 GATTACAAGGTATCATACTCATATGCC 57.681 37.037 0.00 0.00 38.50 4.40
2181 2246 7.321717 ACAAGGTATCATACTCATATGCCTT 57.678 36.000 0.00 0.00 38.40 4.35
2823 2891 8.095937 TCATATTCTGCAGAGCATGAAAATAG 57.904 34.615 27.29 12.07 38.13 1.73
2847 2915 4.141287 TGTATACCAGCTGTGCAGTTTTT 58.859 39.130 13.81 0.00 0.00 1.94
2886 2954 5.975988 TTAAGGATTGTTAGAGCTGGGAT 57.024 39.130 0.00 0.00 0.00 3.85
2924 2992 7.379750 AGTTAAGTTTGCTTGTTTGTTTGGTA 58.620 30.769 0.00 0.00 36.22 3.25
2928 2996 7.497925 AGTTTGCTTGTTTGTTTGGTAAAAA 57.502 28.000 0.00 0.00 0.00 1.94
3038 3106 1.376424 AACTCATGGCTCTGGCACG 60.376 57.895 0.00 0.00 41.84 5.34
3044 3112 2.045926 GGCTCTGGCACGTGGATT 60.046 61.111 18.88 0.00 40.87 3.01
3063 3131 2.281761 CAAGCTTCCACGCACCCT 60.282 61.111 0.00 0.00 0.00 4.34
3091 3159 3.828875 AGCTAGCTCTTTGGTGATACC 57.171 47.619 12.68 0.00 39.22 2.73
3148 3216 2.262637 TGTCAAATTCGGTCTACCCCT 58.737 47.619 0.00 0.00 0.00 4.79
3180 3250 2.740714 CTCCGCACGCTTTAGCCAC 61.741 63.158 0.00 0.00 37.91 5.01
3346 3416 4.139786 GCCACACATCCATCTCAACATAT 58.860 43.478 0.00 0.00 0.00 1.78
3427 3499 1.967319 ACAACATTGCAGGTCGAACT 58.033 45.000 0.00 0.00 0.00 3.01
3645 3717 2.303175 CTCCTCCTCACACCTAGTAGC 58.697 57.143 0.00 0.00 0.00 3.58
3771 3845 3.243101 CGACTATCGTCAACTAGCACCAT 60.243 47.826 0.00 0.00 40.23 3.55
3776 3850 4.729227 TCGTCAACTAGCACCATATCAA 57.271 40.909 0.00 0.00 0.00 2.57
3777 3851 5.276461 TCGTCAACTAGCACCATATCAAT 57.724 39.130 0.00 0.00 0.00 2.57
3778 3852 5.289595 TCGTCAACTAGCACCATATCAATC 58.710 41.667 0.00 0.00 0.00 2.67
3779 3853 5.049828 CGTCAACTAGCACCATATCAATCA 58.950 41.667 0.00 0.00 0.00 2.57
3841 3915 2.174210 CCCTTGTGACCTCATCCATCAT 59.826 50.000 0.00 0.00 0.00 2.45
4111 4188 6.954684 TCCCTATATCTCTCCATAAGTTGTCC 59.045 42.308 0.00 0.00 0.00 4.02
4144 4221 1.617947 GCTTCCATGGTCGACCTCCT 61.618 60.000 33.39 16.52 36.82 3.69
4252 4329 3.282021 GGCTCATCAGCTTAATTCCACA 58.718 45.455 0.00 0.00 46.03 4.17
4277 4354 9.862371 CAGTAATTAGTACAACTCTGAACATCT 57.138 33.333 0.00 0.00 34.88 2.90
4452 4532 2.097825 CCTTGCCTCCTTTCATCCTTG 58.902 52.381 0.00 0.00 0.00 3.61
4488 4568 1.110442 CTCAGACTCCTGGATTCGCT 58.890 55.000 8.23 0.00 40.76 4.93
4520 4600 2.479566 TGCTGGTCTCATCAAAGGAC 57.520 50.000 0.00 0.00 0.00 3.85
4731 4811 0.037975 TTCCTTCGTGCCTAACCGTC 60.038 55.000 0.00 0.00 0.00 4.79
4777 4857 1.311859 CTTGCTTCACCAACAGCTCA 58.688 50.000 0.00 0.00 36.92 4.26
4784 4864 0.740149 CACCAACAGCTCACTTTGCA 59.260 50.000 0.00 0.00 0.00 4.08
4785 4865 1.134753 CACCAACAGCTCACTTTGCAA 59.865 47.619 0.00 0.00 0.00 4.08
4919 4999 3.574826 ACCAGGTATCCTTATCTTCGCTC 59.425 47.826 0.00 0.00 0.00 5.03
4950 5030 1.056660 GGACACTCCAAACTCCTCCA 58.943 55.000 0.00 0.00 36.28 3.86
5062 5173 0.685097 TTGAACGCCTGAGCTACCTT 59.315 50.000 0.00 0.00 36.60 3.50
5125 5330 0.609151 TTATCCCGCTGGACACGAAA 59.391 50.000 0.00 0.00 45.58 3.46
5205 5546 5.163343 GGTATCACCTTACAATCTAGGCACA 60.163 44.000 0.00 0.00 34.73 4.57
5577 5938 5.344933 GGTGATTGTTTCGCTTGGTAAATTC 59.655 40.000 0.00 0.00 35.11 2.17
5578 5939 6.149633 GTGATTGTTTCGCTTGGTAAATTCT 58.850 36.000 0.00 0.00 31.85 2.40
5579 5940 6.640907 GTGATTGTTTCGCTTGGTAAATTCTT 59.359 34.615 0.00 0.00 31.85 2.52
5631 5992 7.592938 TGTTGAGGTGCAGTATTTCTAATTTG 58.407 34.615 0.00 0.00 0.00 2.32
5637 5998 5.801947 GTGCAGTATTTCTAATTTGTGCTGG 59.198 40.000 0.00 0.00 0.00 4.85
5650 6011 0.322456 GTGCTGGCATCCCAACTACA 60.322 55.000 0.00 0.00 41.58 2.74
5651 6012 0.322456 TGCTGGCATCCCAACTACAC 60.322 55.000 0.00 0.00 41.58 2.90
5652 6013 0.322456 GCTGGCATCCCAACTACACA 60.322 55.000 0.00 0.00 41.58 3.72
5653 6014 1.453155 CTGGCATCCCAACTACACAC 58.547 55.000 0.00 0.00 41.58 3.82
5654 6015 0.767998 TGGCATCCCAACTACACACA 59.232 50.000 0.00 0.00 38.46 3.72
5655 6016 1.165270 GGCATCCCAACTACACACAC 58.835 55.000 0.00 0.00 0.00 3.82
5656 6017 1.544537 GGCATCCCAACTACACACACA 60.545 52.381 0.00 0.00 0.00 3.72
5657 6018 1.535462 GCATCCCAACTACACACACAC 59.465 52.381 0.00 0.00 0.00 3.82
5658 6019 2.844946 CATCCCAACTACACACACACA 58.155 47.619 0.00 0.00 0.00 3.72
5659 6020 2.319136 TCCCAACTACACACACACAC 57.681 50.000 0.00 0.00 0.00 3.82
5660 6021 1.555533 TCCCAACTACACACACACACA 59.444 47.619 0.00 0.00 0.00 3.72
5661 6022 1.668751 CCCAACTACACACACACACAC 59.331 52.381 0.00 0.00 0.00 3.82
5662 6023 2.351455 CCAACTACACACACACACACA 58.649 47.619 0.00 0.00 0.00 3.72
5663 6024 2.095213 CCAACTACACACACACACACAC 59.905 50.000 0.00 0.00 0.00 3.82
5664 6025 2.739379 CAACTACACACACACACACACA 59.261 45.455 0.00 0.00 0.00 3.72
5665 6026 2.343101 ACTACACACACACACACACAC 58.657 47.619 0.00 0.00 0.00 3.82
5666 6027 2.289133 ACTACACACACACACACACACA 60.289 45.455 0.00 0.00 0.00 3.72
5667 6028 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5668 6029 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5669 6030 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5694 6087 9.075519 ACACAATGATCATAAATTTACGCTTTG 57.924 29.630 9.04 2.05 0.00 2.77
5750 6143 9.445878 GGTAAAAATGTCCTTACTAACTAGCTT 57.554 33.333 0.00 0.00 0.00 3.74
5771 6164 7.578203 AGCTTGCTTTAAATATTACTCCCTCT 58.422 34.615 0.00 0.00 0.00 3.69
5812 6205 6.040842 CCGGAGAAATGGATAAAAATGGATGT 59.959 38.462 0.00 0.00 0.00 3.06
5862 6255 5.817816 ACATCCATTTCTCCGACAAGTATTC 59.182 40.000 0.00 0.00 0.00 1.75
5865 6258 2.953466 TTCTCCGACAAGTATTCCCG 57.047 50.000 0.00 0.00 0.00 5.14
5893 6286 5.189145 AGAGGGTATAACGGTTTGAAGTGAT 59.811 40.000 0.00 0.00 0.00 3.06
5901 6294 5.097742 ACGGTTTGAAGTGATCCATGATA 57.902 39.130 0.00 0.00 0.00 2.15
6023 6420 7.047891 CAGAGGGACTAGTAAACATTTATGCA 58.952 38.462 0.00 0.00 41.55 3.96
6031 6428 6.875948 AGTAAACATTTATGCACACTGTGA 57.124 33.333 15.86 0.00 35.23 3.58
6074 6479 8.948631 ATGTTCAGATAATCGTACATGAAGTT 57.051 30.769 0.00 0.00 0.00 2.66
6165 6571 8.354711 AGTCCTCTAATTGCTTGATCGATATA 57.645 34.615 0.00 0.00 0.00 0.86
6238 6644 1.243902 TTCCGACCATCAAAAGTGGC 58.756 50.000 0.00 0.00 40.49 5.01
6515 6931 5.376625 TGACTGAGTTTCTGCCAGTTATTT 58.623 37.500 0.00 0.00 40.80 1.40
6575 6991 1.001887 GGGCCGTCATTACCACCAA 60.002 57.895 0.00 0.00 0.00 3.67
6586 7002 5.065218 GTCATTACCACCAACTAGCTCATTG 59.935 44.000 0.00 0.00 0.00 2.82
6664 7080 6.355397 TCGTTTTCAGTAGAGTAGTATCCG 57.645 41.667 0.00 0.00 0.00 4.18
6665 7081 6.108687 TCGTTTTCAGTAGAGTAGTATCCGA 58.891 40.000 0.00 0.00 0.00 4.55
6946 7368 2.076863 CCCTTGTACGCAGAAAGAAGG 58.923 52.381 0.00 0.00 37.28 3.46
6947 7369 2.550208 CCCTTGTACGCAGAAAGAAGGT 60.550 50.000 0.00 0.00 36.39 3.50
6976 7398 5.180492 ACACAGTTCGTTCACTTTTTCTTGA 59.820 36.000 0.00 0.00 0.00 3.02
6997 7419 4.156922 TGACGTTGGTGTTCTTTGAAATGT 59.843 37.500 0.00 0.00 0.00 2.71
7049 7472 5.282055 TGACTTCCTATTGATCGCATTCT 57.718 39.130 0.00 0.00 0.00 2.40
7050 7473 5.292765 TGACTTCCTATTGATCGCATTCTC 58.707 41.667 0.00 0.00 0.00 2.87
7128 7551 0.249911 CCACCCGTAGCTAAGCCATC 60.250 60.000 0.00 0.00 0.00 3.51
7154 7577 6.240894 AGCCATCTTGAGACTTAAACATTGA 58.759 36.000 0.00 0.00 0.00 2.57
7232 7658 3.099905 CCTCAGGTCTACATTGGACTCA 58.900 50.000 0.00 0.00 34.47 3.41
7285 7711 1.081041 TCGACGATGTCACCGTTGG 60.081 57.895 7.15 0.00 40.67 3.77
7295 7721 0.757561 TCACCGTTGGTCCAGACTCA 60.758 55.000 0.00 0.00 31.02 3.41
7321 7747 2.208431 GGATGTCATCTCTTGCTTCCG 58.792 52.381 12.54 0.00 0.00 4.30
7368 7794 1.257743 CTCCAGGTTGAAGTCCTCGA 58.742 55.000 0.00 0.00 32.37 4.04
7370 7796 3.024547 CTCCAGGTTGAAGTCCTCGATA 58.975 50.000 0.00 0.00 32.37 2.92
7374 7800 4.631813 CCAGGTTGAAGTCCTCGATAAAAG 59.368 45.833 0.00 0.00 32.37 2.27
7380 7806 1.202428 AGTCCTCGATAAAAGGAGCGC 60.202 52.381 0.00 0.00 43.54 5.92
7384 7837 0.171679 TCGATAAAAGGAGCGCGTGA 59.828 50.000 8.43 0.00 0.00 4.35
7385 7838 0.572590 CGATAAAAGGAGCGCGTGAG 59.427 55.000 8.43 0.00 0.00 3.51
7403 7856 2.366590 TGAGCGATCTGTATCCAGCATT 59.633 45.455 0.90 0.00 38.66 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 276 4.900684 TCGAACAAAGAGAGAGAGAGAGA 58.099 43.478 0.00 0.00 0.00 3.10
260 277 5.049060 TGTTCGAACAAAGAGAGAGAGAGAG 60.049 44.000 27.94 0.00 35.67 3.20
261 278 4.822350 TGTTCGAACAAAGAGAGAGAGAGA 59.178 41.667 27.94 0.00 35.67 3.10
262 279 5.114785 TGTTCGAACAAAGAGAGAGAGAG 57.885 43.478 27.94 0.00 35.67 3.20
263 280 4.022762 CCTGTTCGAACAAAGAGAGAGAGA 60.023 45.833 29.32 4.35 38.66 3.10
264 281 4.022762 TCCTGTTCGAACAAAGAGAGAGAG 60.023 45.833 29.32 14.62 38.66 3.20
265 282 3.889538 TCCTGTTCGAACAAAGAGAGAGA 59.110 43.478 29.32 13.81 38.66 3.10
266 283 4.233789 CTCCTGTTCGAACAAAGAGAGAG 58.766 47.826 33.84 25.13 39.74 3.20
267 284 3.005897 CCTCCTGTTCGAACAAAGAGAGA 59.994 47.826 36.37 23.58 39.74 3.10
268 285 3.243907 ACCTCCTGTTCGAACAAAGAGAG 60.244 47.826 36.37 30.93 39.74 3.20
269 286 2.698797 ACCTCCTGTTCGAACAAAGAGA 59.301 45.455 36.37 26.51 39.74 3.10
270 287 3.113260 ACCTCCTGTTCGAACAAAGAG 57.887 47.619 32.04 32.04 38.66 2.85
271 288 3.640029 AGTACCTCCTGTTCGAACAAAGA 59.360 43.478 29.32 25.41 38.66 2.52
272 289 3.988517 GAGTACCTCCTGTTCGAACAAAG 59.011 47.826 29.32 26.10 38.66 2.77
639 656 7.059448 ACGTTTCGTTAGACAACTTTACAAA 57.941 32.000 0.00 0.00 36.35 2.83
640 657 6.645700 ACGTTTCGTTAGACAACTTTACAA 57.354 33.333 0.00 0.00 36.35 2.41
655 672 3.272581 TCTGAAGGGAAAAACGTTTCGT 58.727 40.909 15.01 5.39 43.56 3.85
656 673 3.955771 TCTGAAGGGAAAAACGTTTCG 57.044 42.857 15.01 0.00 43.56 3.46
657 674 5.494632 TCTTCTGAAGGGAAAAACGTTTC 57.505 39.130 15.01 2.33 42.16 2.78
658 675 4.338400 CCTCTTCTGAAGGGAAAAACGTTT 59.662 41.667 18.73 7.96 0.00 3.60
659 676 3.883489 CCTCTTCTGAAGGGAAAAACGTT 59.117 43.478 18.73 0.00 0.00 3.99
660 677 3.135895 TCCTCTTCTGAAGGGAAAAACGT 59.864 43.478 18.73 0.00 0.00 3.99
661 678 3.740115 TCCTCTTCTGAAGGGAAAAACG 58.260 45.455 18.73 0.95 0.00 3.60
662 679 4.517075 CACTCCTCTTCTGAAGGGAAAAAC 59.483 45.833 18.73 0.00 30.71 2.43
663 680 4.718961 CACTCCTCTTCTGAAGGGAAAAA 58.281 43.478 18.73 0.87 30.71 1.94
664 681 3.496870 GCACTCCTCTTCTGAAGGGAAAA 60.497 47.826 18.73 3.22 30.71 2.29
665 682 2.039084 GCACTCCTCTTCTGAAGGGAAA 59.961 50.000 18.73 5.61 30.71 3.13
666 683 1.625818 GCACTCCTCTTCTGAAGGGAA 59.374 52.381 18.73 0.00 30.71 3.97
667 684 1.270907 GCACTCCTCTTCTGAAGGGA 58.729 55.000 18.73 19.34 0.00 4.20
668 685 0.108424 CGCACTCCTCTTCTGAAGGG 60.108 60.000 16.83 13.76 0.00 3.95
669 686 0.108424 CCGCACTCCTCTTCTGAAGG 60.108 60.000 16.83 3.31 0.00 3.46
670 687 0.891373 TCCGCACTCCTCTTCTGAAG 59.109 55.000 11.18 11.18 0.00 3.02
671 688 1.561643 ATCCGCACTCCTCTTCTGAA 58.438 50.000 0.00 0.00 0.00 3.02
672 689 1.205655 CAATCCGCACTCCTCTTCTGA 59.794 52.381 0.00 0.00 0.00 3.27
673 690 1.205655 TCAATCCGCACTCCTCTTCTG 59.794 52.381 0.00 0.00 0.00 3.02
674 691 1.561643 TCAATCCGCACTCCTCTTCT 58.438 50.000 0.00 0.00 0.00 2.85
675 692 2.386661 TTCAATCCGCACTCCTCTTC 57.613 50.000 0.00 0.00 0.00 2.87
676 693 4.101585 TCATATTCAATCCGCACTCCTCTT 59.898 41.667 0.00 0.00 0.00 2.85
677 694 3.643320 TCATATTCAATCCGCACTCCTCT 59.357 43.478 0.00 0.00 0.00 3.69
678 695 3.995199 TCATATTCAATCCGCACTCCTC 58.005 45.455 0.00 0.00 0.00 3.71
679 696 4.101585 TCTTCATATTCAATCCGCACTCCT 59.898 41.667 0.00 0.00 0.00 3.69
680 697 4.380531 TCTTCATATTCAATCCGCACTCC 58.619 43.478 0.00 0.00 0.00 3.85
681 698 5.991328 TTCTTCATATTCAATCCGCACTC 57.009 39.130 0.00 0.00 0.00 3.51
682 699 6.949352 AATTCTTCATATTCAATCCGCACT 57.051 33.333 0.00 0.00 0.00 4.40
683 700 7.639039 TGTAATTCTTCATATTCAATCCGCAC 58.361 34.615 0.00 0.00 0.00 5.34
684 701 7.041167 CCTGTAATTCTTCATATTCAATCCGCA 60.041 37.037 0.00 0.00 0.00 5.69
685 702 7.301054 CCTGTAATTCTTCATATTCAATCCGC 58.699 38.462 0.00 0.00 0.00 5.54
686 703 7.661437 TCCCTGTAATTCTTCATATTCAATCCG 59.339 37.037 0.00 0.00 0.00 4.18
687 704 8.787852 GTCCCTGTAATTCTTCATATTCAATCC 58.212 37.037 0.00 0.00 0.00 3.01
688 705 9.566432 AGTCCCTGTAATTCTTCATATTCAATC 57.434 33.333 0.00 0.00 0.00 2.67
689 706 9.927081 AAGTCCCTGTAATTCTTCATATTCAAT 57.073 29.630 0.00 0.00 0.00 2.57
690 707 9.753674 AAAGTCCCTGTAATTCTTCATATTCAA 57.246 29.630 0.00 0.00 0.00 2.69
691 708 9.753674 AAAAGTCCCTGTAATTCTTCATATTCA 57.246 29.630 0.00 0.00 0.00 2.57
693 710 9.981460 AGAAAAGTCCCTGTAATTCTTCATATT 57.019 29.630 0.00 0.00 0.00 1.28
694 711 9.401058 CAGAAAAGTCCCTGTAATTCTTCATAT 57.599 33.333 0.00 0.00 0.00 1.78
695 712 8.383175 ACAGAAAAGTCCCTGTAATTCTTCATA 58.617 33.333 0.00 0.00 41.38 2.15
696 713 7.234355 ACAGAAAAGTCCCTGTAATTCTTCAT 58.766 34.615 0.00 0.00 41.38 2.57
697 714 6.601332 ACAGAAAAGTCCCTGTAATTCTTCA 58.399 36.000 0.00 0.00 41.38 3.02
698 715 8.617290 TTACAGAAAAGTCCCTGTAATTCTTC 57.383 34.615 9.96 0.00 45.50 2.87
705 722 6.319405 GGTGTTTTTACAGAAAAGTCCCTGTA 59.681 38.462 0.00 0.00 42.86 2.74
706 723 5.126545 GGTGTTTTTACAGAAAAGTCCCTGT 59.873 40.000 0.00 0.00 44.81 4.00
707 724 5.588240 GGTGTTTTTACAGAAAAGTCCCTG 58.412 41.667 0.00 0.00 35.96 4.45
708 725 4.337274 CGGTGTTTTTACAGAAAAGTCCCT 59.663 41.667 0.00 0.00 35.96 4.20
709 726 4.336153 TCGGTGTTTTTACAGAAAAGTCCC 59.664 41.667 0.00 0.00 35.96 4.46
710 727 5.268544 GTCGGTGTTTTTACAGAAAAGTCC 58.731 41.667 0.00 0.00 35.96 3.85
711 728 4.959757 CGTCGGTGTTTTTACAGAAAAGTC 59.040 41.667 0.00 0.00 35.96 3.01
712 729 4.630940 TCGTCGGTGTTTTTACAGAAAAGT 59.369 37.500 0.00 0.00 35.96 2.66
713 730 4.959757 GTCGTCGGTGTTTTTACAGAAAAG 59.040 41.667 0.00 0.00 35.96 2.27
714 731 4.492247 CGTCGTCGGTGTTTTTACAGAAAA 60.492 41.667 0.00 0.00 32.61 2.29
715 732 3.000122 CGTCGTCGGTGTTTTTACAGAAA 60.000 43.478 0.00 0.00 0.00 2.52
716 733 2.535166 CGTCGTCGGTGTTTTTACAGAA 59.465 45.455 0.00 0.00 0.00 3.02
717 734 2.118683 CGTCGTCGGTGTTTTTACAGA 58.881 47.619 0.00 0.00 0.00 3.41
718 735 1.854126 ACGTCGTCGGTGTTTTTACAG 59.146 47.619 7.05 0.00 41.85 2.74
719 736 1.919918 ACGTCGTCGGTGTTTTTACA 58.080 45.000 7.05 0.00 41.85 2.41
720 737 2.160285 CGTACGTCGTCGGTGTTTTTAC 60.160 50.000 7.22 0.00 41.85 2.01
721 738 2.040524 CGTACGTCGTCGGTGTTTTTA 58.959 47.619 7.22 0.00 41.85 1.52
722 739 0.845768 CGTACGTCGTCGGTGTTTTT 59.154 50.000 7.22 0.00 41.85 1.94
723 740 0.028770 TCGTACGTCGTCGGTGTTTT 59.971 50.000 16.05 0.00 41.85 2.43
724 741 0.657368 GTCGTACGTCGTCGGTGTTT 60.657 55.000 16.05 0.00 41.85 2.83
725 742 1.082756 GTCGTACGTCGTCGGTGTT 60.083 57.895 16.05 0.00 41.85 3.32
726 743 2.551270 GTCGTACGTCGTCGGTGT 59.449 61.111 16.05 0.00 41.85 4.16
727 744 2.202222 GGTCGTACGTCGTCGGTG 60.202 66.667 16.05 0.00 41.85 4.94
728 745 2.664851 TGGTCGTACGTCGTCGGT 60.665 61.111 16.05 0.00 41.85 4.69
729 746 2.097160 CTGGTCGTACGTCGTCGG 59.903 66.667 16.05 4.95 41.85 4.79
730 747 2.097160 CCTGGTCGTACGTCGTCG 59.903 66.667 16.05 6.02 40.80 5.12
731 748 1.423056 CTCCTGGTCGTACGTCGTC 59.577 63.158 16.05 4.75 40.80 4.20
732 749 2.684843 GCTCCTGGTCGTACGTCGT 61.685 63.158 16.05 2.21 40.80 4.34
733 750 2.099831 GCTCCTGGTCGTACGTCG 59.900 66.667 16.05 0.00 41.41 5.12
734 751 1.664321 ATGGCTCCTGGTCGTACGTC 61.664 60.000 16.05 9.80 0.00 4.34
735 752 1.664321 GATGGCTCCTGGTCGTACGT 61.664 60.000 16.05 0.00 0.00 3.57
736 753 1.065928 GATGGCTCCTGGTCGTACG 59.934 63.158 9.53 9.53 0.00 3.67
737 754 1.065928 CGATGGCTCCTGGTCGTAC 59.934 63.158 0.00 0.00 0.00 3.67
738 755 2.125326 CCGATGGCTCCTGGTCGTA 61.125 63.158 0.00 0.00 32.55 3.43
739 756 3.461773 CCGATGGCTCCTGGTCGT 61.462 66.667 0.00 0.00 32.55 4.34
740 757 3.461773 ACCGATGGCTCCTGGTCG 61.462 66.667 0.00 0.00 0.00 4.79
741 758 2.187946 CACCGATGGCTCCTGGTC 59.812 66.667 0.00 0.00 30.72 4.02
742 759 4.101448 GCACCGATGGCTCCTGGT 62.101 66.667 0.00 0.00 34.29 4.00
743 760 2.826777 AAAGCACCGATGGCTCCTGG 62.827 60.000 0.00 0.00 41.66 4.45
744 761 0.107703 TAAAGCACCGATGGCTCCTG 60.108 55.000 0.00 0.00 41.66 3.86
745 762 0.839946 ATAAAGCACCGATGGCTCCT 59.160 50.000 0.00 0.00 41.66 3.69
746 763 1.680338 AATAAAGCACCGATGGCTCC 58.320 50.000 0.00 0.00 41.66 4.70
747 764 3.467803 ACTAATAAAGCACCGATGGCTC 58.532 45.455 0.00 0.00 41.66 4.70
748 765 3.560636 ACTAATAAAGCACCGATGGCT 57.439 42.857 0.00 0.00 45.15 4.75
749 766 3.746492 CCTACTAATAAAGCACCGATGGC 59.254 47.826 0.00 0.00 0.00 4.40
750 767 4.957296 ACCTACTAATAAAGCACCGATGG 58.043 43.478 0.00 0.00 0.00 3.51
751 768 7.924412 TCTTTACCTACTAATAAAGCACCGATG 59.076 37.037 0.00 0.00 37.99 3.84
752 769 8.015185 TCTTTACCTACTAATAAAGCACCGAT 57.985 34.615 0.00 0.00 37.99 4.18
753 770 7.408756 TCTTTACCTACTAATAAAGCACCGA 57.591 36.000 0.00 0.00 37.99 4.69
754 771 6.700520 CCTCTTTACCTACTAATAAAGCACCG 59.299 42.308 0.00 0.00 37.99 4.94
755 772 7.563020 ACCTCTTTACCTACTAATAAAGCACC 58.437 38.462 0.00 0.00 37.99 5.01
774 791 9.825109 GTGCTCTAATCTTTATCTTTACCTCTT 57.175 33.333 0.00 0.00 0.00 2.85
775 792 8.425703 GGTGCTCTAATCTTTATCTTTACCTCT 58.574 37.037 0.00 0.00 0.00 3.69
776 793 8.425703 AGGTGCTCTAATCTTTATCTTTACCTC 58.574 37.037 0.00 0.00 0.00 3.85
777 794 8.325477 AGGTGCTCTAATCTTTATCTTTACCT 57.675 34.615 0.00 0.00 0.00 3.08
786 803 9.959721 AACAGATTTTAGGTGCTCTAATCTTTA 57.040 29.630 0.00 0.00 37.74 1.85
787 804 8.734386 CAACAGATTTTAGGTGCTCTAATCTTT 58.266 33.333 0.00 0.00 37.74 2.52
788 805 7.885399 ACAACAGATTTTAGGTGCTCTAATCTT 59.115 33.333 0.00 0.00 37.74 2.40
789 806 7.335422 CACAACAGATTTTAGGTGCTCTAATCT 59.665 37.037 0.00 0.00 37.74 2.40
790 807 7.414540 CCACAACAGATTTTAGGTGCTCTAATC 60.415 40.741 1.96 0.00 37.74 1.75
791 808 6.375455 CCACAACAGATTTTAGGTGCTCTAAT 59.625 38.462 1.96 0.00 37.74 1.73
792 809 5.705441 CCACAACAGATTTTAGGTGCTCTAA 59.295 40.000 0.00 0.00 36.26 2.10
793 810 5.245531 CCACAACAGATTTTAGGTGCTCTA 58.754 41.667 0.00 0.00 0.00 2.43
794 811 4.074970 CCACAACAGATTTTAGGTGCTCT 58.925 43.478 0.00 0.00 0.00 4.09
795 812 3.366374 GCCACAACAGATTTTAGGTGCTC 60.366 47.826 0.00 0.00 0.00 4.26
796 813 2.558359 GCCACAACAGATTTTAGGTGCT 59.442 45.455 0.00 0.00 0.00 4.40
797 814 2.668279 CGCCACAACAGATTTTAGGTGC 60.668 50.000 0.00 0.00 0.00 5.01
798 815 2.668279 GCGCCACAACAGATTTTAGGTG 60.668 50.000 0.00 0.00 0.00 4.00
799 816 1.539827 GCGCCACAACAGATTTTAGGT 59.460 47.619 0.00 0.00 0.00 3.08
800 817 1.465689 CGCGCCACAACAGATTTTAGG 60.466 52.381 0.00 0.00 0.00 2.69
801 818 1.465689 CCGCGCCACAACAGATTTTAG 60.466 52.381 0.00 0.00 0.00 1.85
802 819 0.519519 CCGCGCCACAACAGATTTTA 59.480 50.000 0.00 0.00 0.00 1.52
803 820 1.285641 CCGCGCCACAACAGATTTT 59.714 52.632 0.00 0.00 0.00 1.82
804 821 1.452145 AACCGCGCCACAACAGATTT 61.452 50.000 0.00 0.00 0.00 2.17
805 822 1.896660 AACCGCGCCACAACAGATT 60.897 52.632 0.00 0.00 0.00 2.40
806 823 2.281484 AACCGCGCCACAACAGAT 60.281 55.556 0.00 0.00 0.00 2.90
807 824 3.276091 CAACCGCGCCACAACAGA 61.276 61.111 0.00 0.00 0.00 3.41
808 825 4.980903 GCAACCGCGCCACAACAG 62.981 66.667 0.00 0.00 0.00 3.16
810 827 4.980903 CTGCAACCGCGCCACAAC 62.981 66.667 0.00 0.00 42.97 3.32
813 830 4.465512 CATCTGCAACCGCGCCAC 62.466 66.667 0.00 0.00 42.97 5.01
816 833 3.615536 AAAGCATCTGCAACCGCGC 62.616 57.895 0.00 0.00 45.16 6.86
817 834 0.167908 TAAAAGCATCTGCAACCGCG 59.832 50.000 0.00 0.00 45.16 6.46
818 835 1.468520 TCTAAAAGCATCTGCAACCGC 59.531 47.619 4.79 0.00 45.16 5.68
822 839 7.826252 AGAGTCTAAATCTAAAAGCATCTGCAA 59.174 33.333 4.79 0.00 45.16 4.08
825 842 7.768120 ACCAGAGTCTAAATCTAAAAGCATCTG 59.232 37.037 0.00 0.00 0.00 2.90
832 849 6.769512 AGCACACCAGAGTCTAAATCTAAAA 58.230 36.000 0.00 0.00 0.00 1.52
833 850 6.360370 AGCACACCAGAGTCTAAATCTAAA 57.640 37.500 0.00 0.00 0.00 1.85
1194 1229 1.146263 GGACCCGATTGATCCGCTT 59.854 57.895 0.00 0.00 0.00 4.68
1222 1257 3.437795 CGAGCCGAGGTACCACGT 61.438 66.667 26.62 12.21 0.00 4.49
1361 1396 2.112815 CCAGGATTCGGCGTTTCCC 61.113 63.158 21.31 12.76 0.00 3.97
1389 1449 6.337914 CGAAGCGTATTAGATTTCGACTTTC 58.662 40.000 0.00 0.00 42.16 2.62
1474 1534 5.179368 ACCTAAACAGAACAACGACATGATG 59.821 40.000 0.00 0.00 0.00 3.07
1495 1555 1.827399 ATCCCGCGTTTCTGTGACCT 61.827 55.000 4.92 0.00 0.00 3.85
1668 1731 5.725362 ACATTTCGAGTTTCTAAGAGGAGG 58.275 41.667 0.00 0.00 0.00 4.30
1835 1900 6.318648 AGTCAATTGCAACTTAGTTTCTGACA 59.681 34.615 0.00 0.16 33.55 3.58
1841 1906 5.163519 ACAGCAGTCAATTGCAACTTAGTTT 60.164 36.000 0.00 0.00 46.47 2.66
1853 1918 5.127682 AGGAAACAGAAAACAGCAGTCAATT 59.872 36.000 0.00 0.00 0.00 2.32
1868 1933 2.735259 ACCCCTCCTAAGGAAACAGA 57.265 50.000 0.00 0.00 46.67 3.41
1969 2034 1.432270 GCCATGCGCAGAGTCCTAAC 61.432 60.000 18.32 0.00 37.47 2.34
2224 2290 6.089820 CAGAAAGCGCATTAATGACAAAACAT 59.910 34.615 19.73 0.00 0.00 2.71
2289 2355 3.935828 GTCATAGAAGCAAGTCCCAAGAC 59.064 47.826 0.00 0.00 43.89 3.01
2413 2479 4.757799 TGTGTATGGTGTGTTATTGTGC 57.242 40.909 0.00 0.00 0.00 4.57
2476 2542 9.901172 CCTTTTCTACTACAATATGTTAAGGGT 57.099 33.333 0.00 0.00 0.00 4.34
2477 2543 9.901172 ACCTTTTCTACTACAATATGTTAAGGG 57.099 33.333 0.00 0.00 33.34 3.95
2600 2667 9.713684 AGGGATTCAACAATAGGAAAATGAATA 57.286 29.630 0.00 0.00 37.56 1.75
2710 2777 5.296780 ACTCATTGAGTATAATTTGTGGCCG 59.703 40.000 17.63 0.00 41.51 6.13
2823 2891 2.699954 ACTGCACAGCTGGTATACAAC 58.300 47.619 19.93 0.00 0.00 3.32
2847 2915 5.430007 TCCTTAAAGACACCGTTTCAAGAA 58.570 37.500 0.00 0.00 0.00 2.52
2928 2996 5.960113 TGTTGTTGTTGTTGTAGCATCTTT 58.040 33.333 0.00 0.00 0.00 2.52
2929 2997 5.574891 TGTTGTTGTTGTTGTAGCATCTT 57.425 34.783 0.00 0.00 0.00 2.40
2930 2998 5.105957 TGTTGTTGTTGTTGTTGTAGCATCT 60.106 36.000 0.00 0.00 0.00 2.90
2931 2999 5.098893 TGTTGTTGTTGTTGTTGTAGCATC 58.901 37.500 0.00 0.00 0.00 3.91
2932 3000 5.065704 TGTTGTTGTTGTTGTTGTAGCAT 57.934 34.783 0.00 0.00 0.00 3.79
2933 3001 4.505313 TGTTGTTGTTGTTGTTGTAGCA 57.495 36.364 0.00 0.00 0.00 3.49
2934 3002 4.681942 TGTTGTTGTTGTTGTTGTTGTAGC 59.318 37.500 0.00 0.00 0.00 3.58
2935 3003 6.755461 TTGTTGTTGTTGTTGTTGTTGTAG 57.245 33.333 0.00 0.00 0.00 2.74
3044 3112 3.286751 GGTGCGTGGAAGCTTGCA 61.287 61.111 17.55 17.55 38.13 4.08
3063 3131 3.519510 ACCAAAGAGCTAGCTATGGACAA 59.480 43.478 33.71 0.00 32.26 3.18
3091 3159 2.476199 AGAGAGACCTGAAGGATTGGG 58.524 52.381 2.62 0.00 38.94 4.12
3148 3216 0.537188 GCGGAGAATGTCAAGAGGGA 59.463 55.000 0.00 0.00 0.00 4.20
3180 3250 2.590007 GCTCCAGTGCATAGCGGG 60.590 66.667 0.00 0.00 0.00 6.13
3346 3416 1.549243 TTAGGTGTGGCGGAGATGCA 61.549 55.000 0.00 0.00 36.28 3.96
3427 3499 0.320421 GCAAGTTCTACAGGACGGCA 60.320 55.000 0.00 0.00 0.00 5.69
3595 3667 3.261677 GGCCAGGTGGTACCCCAA 61.262 66.667 18.39 0.00 44.15 4.12
3598 3670 1.858739 TTGATGGCCAGGTGGTACCC 61.859 60.000 13.05 0.11 39.75 3.69
3645 3717 1.536766 ACATGATGTGCGGTTTCAGTG 59.463 47.619 0.00 0.00 0.00 3.66
3841 3915 4.771577 TGAGCCCTTATCTTTTTGCATTGA 59.228 37.500 0.00 0.00 0.00 2.57
4111 4188 4.142093 CCATGGAAGCCATTTTCTTGGTAG 60.142 45.833 5.56 0.00 42.23 3.18
4144 4221 6.418057 AAAATCAGTTTGGTTTCATGCCTA 57.582 33.333 0.00 0.00 27.60 3.93
4277 4354 4.453480 ACCAATCTTCAAGAACAAGGGA 57.547 40.909 0.00 0.00 0.00 4.20
4452 4532 3.008049 TCTGAGGTCAAGGAGGCTTTAAC 59.992 47.826 0.00 0.00 0.00 2.01
4520 4600 3.868757 TCTACCATTGAACTGGACGAG 57.131 47.619 0.00 0.00 39.73 4.18
4709 4789 1.025113 GGTTAGGCACGAAGGAAGGC 61.025 60.000 0.00 0.00 0.00 4.35
4731 4811 1.546476 GGCATATGAGGACCTCTACCG 59.454 57.143 22.14 9.64 0.00 4.02
4777 4857 0.668535 GGCGAAGAAGGTTGCAAAGT 59.331 50.000 0.00 0.00 0.00 2.66
4784 4864 2.568623 ACAAGATGGCGAAGAAGGTT 57.431 45.000 0.00 0.00 0.00 3.50
4785 4865 2.567615 AGTACAAGATGGCGAAGAAGGT 59.432 45.455 0.00 0.00 0.00 3.50
4919 4999 1.229658 AGTGTCCAGGGGAAGGAGG 60.230 63.158 0.00 0.00 35.42 4.30
4950 5030 0.037590 TGCATTCGTAAGGTGGCCTT 59.962 50.000 3.32 5.69 46.63 4.35
5062 5173 0.476771 GTGGTGGAAGTTCAAGGGGA 59.523 55.000 5.01 0.00 0.00 4.81
5195 5536 2.623889 GGATAGACGTGTGTGCCTAGAT 59.376 50.000 0.00 0.00 0.00 1.98
5205 5546 3.118702 TCGAGAAGAGAGGATAGACGTGT 60.119 47.826 0.00 0.00 0.00 4.49
5342 5703 9.643693 ACATAAACAAGGAGCATTAAAATTGAG 57.356 29.630 0.00 0.00 0.00 3.02
5577 5938 5.788450 ACATCAGACTGTTAGTGAAGGAAG 58.212 41.667 1.59 0.00 0.00 3.46
5578 5939 5.808366 ACATCAGACTGTTAGTGAAGGAA 57.192 39.130 1.59 0.00 0.00 3.36
5579 5940 5.808366 AACATCAGACTGTTAGTGAAGGA 57.192 39.130 1.59 0.00 37.58 3.36
5631 5992 0.322456 TGTAGTTGGGATGCCAGCAC 60.322 55.000 21.74 16.59 0.00 4.40
5637 5998 1.535462 GTGTGTGTGTAGTTGGGATGC 59.465 52.381 0.00 0.00 0.00 3.91
5650 6011 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5651 6012 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5652 6013 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5653 6014 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5654 6015 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
5655 6016 2.161211 TCATTGTGTGTGTGTGTGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
5656 6017 2.431454 TCATTGTGTGTGTGTGTGTGT 58.569 42.857 0.00 0.00 0.00 3.72
5657 6018 3.065095 TGATCATTGTGTGTGTGTGTGTG 59.935 43.478 0.00 0.00 0.00 3.82
5658 6019 3.277715 TGATCATTGTGTGTGTGTGTGT 58.722 40.909 0.00 0.00 0.00 3.72
5659 6020 3.967203 TGATCATTGTGTGTGTGTGTG 57.033 42.857 0.00 0.00 0.00 3.82
5660 6021 6.631971 TTTATGATCATTGTGTGTGTGTGT 57.368 33.333 14.65 0.00 0.00 3.72
5661 6022 8.523523 AAATTTATGATCATTGTGTGTGTGTG 57.476 30.769 14.65 0.00 0.00 3.82
5662 6023 9.624697 GTAAATTTATGATCATTGTGTGTGTGT 57.375 29.630 14.65 0.00 0.00 3.72
5663 6024 8.787884 CGTAAATTTATGATCATTGTGTGTGTG 58.212 33.333 14.65 0.00 0.00 3.82
5664 6025 7.484641 GCGTAAATTTATGATCATTGTGTGTGT 59.515 33.333 19.46 0.00 0.00 3.72
5665 6026 7.697710 AGCGTAAATTTATGATCATTGTGTGTG 59.302 33.333 19.46 0.02 0.00 3.82
5666 6027 7.761409 AGCGTAAATTTATGATCATTGTGTGT 58.239 30.769 19.46 0.00 0.00 3.72
5667 6028 8.619146 AAGCGTAAATTTATGATCATTGTGTG 57.381 30.769 19.46 0.00 0.00 3.82
5668 6029 9.075519 CAAAGCGTAAATTTATGATCATTGTGT 57.924 29.630 19.46 0.00 0.00 3.72
5669 6030 9.288124 TCAAAGCGTAAATTTATGATCATTGTG 57.712 29.630 19.46 8.53 0.00 3.33
5750 6143 7.987458 CAGACAGAGGGAGTAATATTTAAAGCA 59.013 37.037 0.00 0.00 0.00 3.91
5771 6164 1.557371 TCCGGCATGTATTTCCAGACA 59.443 47.619 0.00 0.00 0.00 3.41
5865 6258 3.196254 TCAAACCGTTATACCCTCTGTCC 59.804 47.826 0.00 0.00 0.00 4.02
6023 6420 2.634453 TCTCACATCATGGTCACAGTGT 59.366 45.455 0.00 0.00 0.00 3.55
6031 6428 4.767578 ACATAGCTTCTCACATCATGGT 57.232 40.909 0.00 0.00 0.00 3.55
6074 6479 4.456662 TTAAAGTTGGCAGGGAAGGTAA 57.543 40.909 0.00 0.00 0.00 2.85
6165 6571 2.024941 GGGATTGTCTCACCTGGGAATT 60.025 50.000 0.00 0.00 0.00 2.17
6238 6644 4.706476 TCACAAAGAGGCCAATAAATGAGG 59.294 41.667 5.01 0.00 0.00 3.86
6326 6739 7.706179 CCAAACAAAGTTTGAAGCTCAAATAGA 59.294 33.333 22.23 0.00 46.55 1.98
6344 6757 3.132646 AGTTCAGATTGCTGCCAAACAAA 59.867 39.130 0.00 0.00 42.01 2.83
6352 6765 2.105006 TCCTCAGTTCAGATTGCTGC 57.895 50.000 0.00 0.00 42.01 5.25
6515 6931 3.560025 GCCCATGAAGACTTCCTTTCAGA 60.560 47.826 12.66 0.00 34.68 3.27
6594 7010 7.015877 GTCTCTGTTTTGGTCGTTGAATATTC 58.984 38.462 8.60 8.60 0.00 1.75
6598 7014 4.196193 TGTCTCTGTTTTGGTCGTTGAAT 58.804 39.130 0.00 0.00 0.00 2.57
6664 7080 2.548480 ACGCAAACTAGAAAAGCCTGTC 59.452 45.455 0.00 0.00 0.00 3.51
6665 7081 2.572290 ACGCAAACTAGAAAAGCCTGT 58.428 42.857 0.00 0.00 0.00 4.00
6946 7368 5.652744 AAGTGAACGAACTGTGTAATCAC 57.347 39.130 0.00 8.24 44.08 3.06
6947 7369 6.671614 AAAAGTGAACGAACTGTGTAATCA 57.328 33.333 0.00 0.00 0.00 2.57
6976 7398 4.712122 ACATTTCAAAGAACACCAACGT 57.288 36.364 0.00 0.00 0.00 3.99
7049 7472 5.957842 AAACTAATTCGTTGCAATCAGGA 57.042 34.783 0.59 0.00 0.00 3.86
7154 7577 1.112315 CGCAGTCTCCCTGGCTCTAT 61.112 60.000 0.00 0.00 41.81 1.98
7285 7711 2.564947 ACATCCAACTCTGAGTCTGGAC 59.435 50.000 28.15 0.00 37.83 4.02
7321 7747 2.112815 GCAACTGGGGGTGATACGC 61.113 63.158 0.00 0.00 0.00 4.42
7368 7794 2.384203 GCTCACGCGCTCCTTTTAT 58.616 52.632 5.73 0.00 0.00 1.40
7414 7867 2.224018 GCTCAGGCAAGAGAGGATACTG 60.224 54.545 10.65 0.00 43.23 2.74
7443 7896 2.170187 AGGAGATGCAGGCTGTTAAGAG 59.830 50.000 17.16 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.