Multiple sequence alignment - TraesCS5A01G105200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G105200 chr5A 100.000 4629 0 0 1 4629 169620459 169625087 0.000000e+00 8549
1 TraesCS5A01G105200 chr5A 74.805 512 115 12 398 902 706017486 706017990 7.800000e-53 219
2 TraesCS5A01G105200 chr5D 96.207 2452 75 7 2015 4462 135523702 135521265 0.000000e+00 3997
3 TraesCS5A01G105200 chr5D 91.641 658 32 5 1314 1970 135524338 135523703 0.000000e+00 889
4 TraesCS5A01G105200 chr5D 95.325 385 15 2 898 1282 135524714 135524333 3.960000e-170 608
5 TraesCS5A01G105200 chr5D 90.244 164 16 0 4466 4629 135521226 135521063 1.010000e-51 215
6 TraesCS5A01G105200 chr5B 93.374 2626 120 16 1861 4462 147159080 147156485 0.000000e+00 3836
7 TraesCS5A01G105200 chr5B 94.866 448 18 2 991 1437 147162266 147161823 0.000000e+00 695
8 TraesCS5A01G105200 chr5B 83.765 425 38 20 1441 1856 147160344 147159942 1.570000e-99 374
9 TraesCS5A01G105200 chr5B 98.171 164 3 0 4466 4629 147156448 147156285 2.110000e-73 287
10 TraesCS5A01G105200 chr5B 91.667 108 8 1 894 1001 147163485 147163379 1.040000e-31 148
11 TraesCS5A01G105200 chr4D 83.414 621 95 8 287 902 455660604 455659987 1.870000e-158 569
12 TraesCS5A01G105200 chr4D 95.185 270 7 4 1 265 137502535 137502803 5.540000e-114 422
13 TraesCS5A01G105200 chr1A 96.629 267 7 2 1 266 350771578 350771843 4.250000e-120 442
14 TraesCS5A01G105200 chr1D 96.269 268 8 2 1 267 221780508 221780242 5.500000e-119 438
15 TraesCS5A01G105200 chr1D 95.522 268 9 3 1 266 430227945 430228211 4.280000e-115 425
16 TraesCS5A01G105200 chr1D 95.167 269 10 3 1 267 290062747 290062480 5.540000e-114 422
17 TraesCS5A01G105200 chr2D 95.896 268 8 3 1 266 155341923 155341657 9.200000e-117 431
18 TraesCS5A01G105200 chr2D 95.849 265 8 3 1 263 279190515 279190252 4.280000e-115 425
19 TraesCS5A01G105200 chr7D 95.522 268 10 2 1 267 440967253 440966987 1.190000e-115 427
20 TraesCS5A01G105200 chr7D 75.275 546 127 8 366 905 174673532 174672989 2.140000e-63 254
21 TraesCS5A01G105200 chr7D 75.046 541 113 20 376 902 56494433 56494965 1.000000e-56 231
22 TraesCS5A01G105200 chr7D 77.019 322 67 4 585 901 56510992 56511311 1.320000e-40 178
23 TraesCS5A01G105200 chr7A 95.522 268 9 3 1 266 238520509 238520775 4.280000e-115 425
24 TraesCS5A01G105200 chr1B 74.121 313 57 18 595 902 16692125 16692418 1.760000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G105200 chr5A 169620459 169625087 4628 False 8549.00 8549 100.00000 1 4629 1 chr5A.!!$F1 4628
1 TraesCS5A01G105200 chr5A 706017486 706017990 504 False 219.00 219 74.80500 398 902 1 chr5A.!!$F2 504
2 TraesCS5A01G105200 chr5D 135521063 135524714 3651 True 1427.25 3997 93.35425 898 4629 4 chr5D.!!$R1 3731
3 TraesCS5A01G105200 chr5B 147156285 147163485 7200 True 1068.00 3836 92.36860 894 4629 5 chr5B.!!$R1 3735
4 TraesCS5A01G105200 chr4D 455659987 455660604 617 True 569.00 569 83.41400 287 902 1 chr4D.!!$R1 615
5 TraesCS5A01G105200 chr7D 174672989 174673532 543 True 254.00 254 75.27500 366 905 1 chr7D.!!$R1 539
6 TraesCS5A01G105200 chr7D 56494433 56494965 532 False 231.00 231 75.04600 376 902 1 chr7D.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.112412 TGCCTTCTCCAAACCCTTCC 59.888 55.0 0.00 0.00 0.00 3.46 F
771 780 0.322975 AGCTCATGAACTCGCCAAGT 59.677 50.0 0.00 0.00 41.10 3.16 F
978 989 0.392706 ACTGATTGCTGACGTCACCA 59.607 50.0 15.76 12.34 0.00 4.17 F
2393 5877 0.034059 CGCACCCAGCTAATAGAGGG 59.966 60.0 14.28 14.28 46.96 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 4080 0.988832 AGCGGGTAAACAGATTCCCA 59.011 50.000 0.00 0.0 39.87 4.37 R
2361 5844 0.682209 GGGTGCGTGGGACTAGTCTA 60.682 60.000 21.88 9.3 0.00 2.59 R
2862 6367 4.323417 ACAATTGACTACAATCAAGCGGA 58.677 39.130 13.59 0.0 44.67 5.54 R
3746 7252 1.136695 CAGCCAACAAAAGCAAGGTCA 59.863 47.619 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.871021 TGGACGTACGATAGCACCA 58.129 52.632 24.41 16.42 42.67 4.17
19 20 0.452987 TGGACGTACGATAGCACCAC 59.547 55.000 24.41 1.56 42.67 4.16
20 21 0.248784 GGACGTACGATAGCACCACC 60.249 60.000 24.41 6.83 42.67 4.61
21 22 0.737219 GACGTACGATAGCACCACCT 59.263 55.000 24.41 0.00 42.67 4.00
22 23 1.942657 GACGTACGATAGCACCACCTA 59.057 52.381 24.41 0.00 42.67 3.08
23 24 2.551459 GACGTACGATAGCACCACCTAT 59.449 50.000 24.41 0.00 42.67 2.57
24 25 2.551459 ACGTACGATAGCACCACCTATC 59.449 50.000 24.41 0.00 40.05 2.08
29 30 3.027974 GATAGCACCACCTATCGGAAC 57.972 52.381 0.00 0.00 35.71 3.62
30 31 1.117150 TAGCACCACCTATCGGAACC 58.883 55.000 0.00 0.00 0.00 3.62
31 32 0.907704 AGCACCACCTATCGGAACCA 60.908 55.000 0.00 0.00 0.00 3.67
32 33 0.743345 GCACCACCTATCGGAACCAC 60.743 60.000 0.00 0.00 0.00 4.16
33 34 0.459585 CACCACCTATCGGAACCACG 60.460 60.000 0.00 0.00 0.00 4.94
34 35 1.520787 CCACCTATCGGAACCACGC 60.521 63.158 0.00 0.00 0.00 5.34
35 36 1.520787 CACCTATCGGAACCACGCC 60.521 63.158 0.00 0.00 0.00 5.68
36 37 1.985662 ACCTATCGGAACCACGCCA 60.986 57.895 0.00 0.00 0.00 5.69
37 38 1.219664 CCTATCGGAACCACGCCAA 59.780 57.895 0.00 0.00 0.00 4.52
38 39 0.391927 CCTATCGGAACCACGCCAAA 60.392 55.000 0.00 0.00 0.00 3.28
39 40 1.444836 CTATCGGAACCACGCCAAAA 58.555 50.000 0.00 0.00 0.00 2.44
40 41 1.807742 CTATCGGAACCACGCCAAAAA 59.192 47.619 0.00 0.00 0.00 1.94
41 42 1.253100 ATCGGAACCACGCCAAAAAT 58.747 45.000 0.00 0.00 0.00 1.82
42 43 0.594110 TCGGAACCACGCCAAAAATC 59.406 50.000 0.00 0.00 0.00 2.17
43 44 0.596082 CGGAACCACGCCAAAAATCT 59.404 50.000 0.00 0.00 0.00 2.40
44 45 1.401018 CGGAACCACGCCAAAAATCTC 60.401 52.381 0.00 0.00 0.00 2.75
45 46 1.067846 GGAACCACGCCAAAAATCTCC 60.068 52.381 0.00 0.00 0.00 3.71
46 47 0.596082 AACCACGCCAAAAATCTCCG 59.404 50.000 0.00 0.00 0.00 4.63
47 48 0.536460 ACCACGCCAAAAATCTCCGT 60.536 50.000 0.00 0.00 0.00 4.69
48 49 1.270947 ACCACGCCAAAAATCTCCGTA 60.271 47.619 0.00 0.00 0.00 4.02
49 50 2.014128 CCACGCCAAAAATCTCCGTAT 58.986 47.619 0.00 0.00 0.00 3.06
50 51 2.031683 CCACGCCAAAAATCTCCGTATC 59.968 50.000 0.00 0.00 0.00 2.24
51 52 2.936498 CACGCCAAAAATCTCCGTATCT 59.064 45.455 0.00 0.00 0.00 1.98
52 53 4.116961 CACGCCAAAAATCTCCGTATCTA 58.883 43.478 0.00 0.00 0.00 1.98
53 54 4.025979 CACGCCAAAAATCTCCGTATCTAC 60.026 45.833 0.00 0.00 0.00 2.59
54 55 4.116961 CGCCAAAAATCTCCGTATCTACA 58.883 43.478 0.00 0.00 0.00 2.74
55 56 4.750098 CGCCAAAAATCTCCGTATCTACAT 59.250 41.667 0.00 0.00 0.00 2.29
56 57 5.236478 CGCCAAAAATCTCCGTATCTACATT 59.764 40.000 0.00 0.00 0.00 2.71
57 58 6.430451 GCCAAAAATCTCCGTATCTACATTG 58.570 40.000 0.00 0.00 0.00 2.82
58 59 6.038271 GCCAAAAATCTCCGTATCTACATTGT 59.962 38.462 0.00 0.00 0.00 2.71
59 60 7.409697 CCAAAAATCTCCGTATCTACATTGTG 58.590 38.462 0.00 0.00 0.00 3.33
60 61 7.065803 CCAAAAATCTCCGTATCTACATTGTGT 59.934 37.037 0.00 0.00 0.00 3.72
61 62 8.450964 CAAAAATCTCCGTATCTACATTGTGTT 58.549 33.333 0.00 0.00 0.00 3.32
62 63 8.561738 AAAATCTCCGTATCTACATTGTGTTT 57.438 30.769 0.00 0.00 0.00 2.83
63 64 7.539712 AATCTCCGTATCTACATTGTGTTTG 57.460 36.000 0.00 0.00 0.00 2.93
64 65 4.868171 TCTCCGTATCTACATTGTGTTTGC 59.132 41.667 0.00 0.00 0.00 3.68
65 66 3.936453 TCCGTATCTACATTGTGTTTGCC 59.064 43.478 0.00 0.00 0.00 4.52
66 67 3.938963 CCGTATCTACATTGTGTTTGCCT 59.061 43.478 0.00 0.00 0.00 4.75
67 68 4.394920 CCGTATCTACATTGTGTTTGCCTT 59.605 41.667 0.00 0.00 0.00 4.35
68 69 5.447279 CCGTATCTACATTGTGTTTGCCTTC 60.447 44.000 0.00 0.00 0.00 3.46
69 70 5.351465 CGTATCTACATTGTGTTTGCCTTCT 59.649 40.000 0.00 0.00 0.00 2.85
70 71 5.886960 ATCTACATTGTGTTTGCCTTCTC 57.113 39.130 0.00 0.00 0.00 2.87
71 72 4.072131 TCTACATTGTGTTTGCCTTCTCC 58.928 43.478 0.00 0.00 0.00 3.71
72 73 2.665165 ACATTGTGTTTGCCTTCTCCA 58.335 42.857 0.00 0.00 0.00 3.86
73 74 3.030291 ACATTGTGTTTGCCTTCTCCAA 58.970 40.909 0.00 0.00 0.00 3.53
74 75 3.450457 ACATTGTGTTTGCCTTCTCCAAA 59.550 39.130 0.00 0.00 0.00 3.28
78 79 1.704641 GTTTGCCTTCTCCAAACCCT 58.295 50.000 5.87 0.00 43.74 4.34
79 80 2.039418 GTTTGCCTTCTCCAAACCCTT 58.961 47.619 5.87 0.00 43.74 3.95
80 81 1.995376 TTGCCTTCTCCAAACCCTTC 58.005 50.000 0.00 0.00 0.00 3.46
81 82 0.112412 TGCCTTCTCCAAACCCTTCC 59.888 55.000 0.00 0.00 0.00 3.46
82 83 0.612174 GCCTTCTCCAAACCCTTCCC 60.612 60.000 0.00 0.00 0.00 3.97
83 84 1.076438 CCTTCTCCAAACCCTTCCCT 58.924 55.000 0.00 0.00 0.00 4.20
84 85 1.429299 CCTTCTCCAAACCCTTCCCTT 59.571 52.381 0.00 0.00 0.00 3.95
85 86 2.158310 CCTTCTCCAAACCCTTCCCTTT 60.158 50.000 0.00 0.00 0.00 3.11
86 87 3.075432 CCTTCTCCAAACCCTTCCCTTTA 59.925 47.826 0.00 0.00 0.00 1.85
87 88 3.801307 TCTCCAAACCCTTCCCTTTAC 57.199 47.619 0.00 0.00 0.00 2.01
88 89 2.039348 TCTCCAAACCCTTCCCTTTACG 59.961 50.000 0.00 0.00 0.00 3.18
89 90 1.776063 TCCAAACCCTTCCCTTTACGT 59.224 47.619 0.00 0.00 0.00 3.57
90 91 2.175284 TCCAAACCCTTCCCTTTACGTT 59.825 45.455 0.00 0.00 0.00 3.99
91 92 2.555325 CCAAACCCTTCCCTTTACGTTC 59.445 50.000 0.00 0.00 0.00 3.95
92 93 3.215975 CAAACCCTTCCCTTTACGTTCA 58.784 45.455 0.00 0.00 0.00 3.18
93 94 3.801307 AACCCTTCCCTTTACGTTCAT 57.199 42.857 0.00 0.00 0.00 2.57
94 95 4.914177 AACCCTTCCCTTTACGTTCATA 57.086 40.909 0.00 0.00 0.00 2.15
95 96 5.446260 AACCCTTCCCTTTACGTTCATAT 57.554 39.130 0.00 0.00 0.00 1.78
96 97 4.777463 ACCCTTCCCTTTACGTTCATATG 58.223 43.478 0.00 0.00 0.00 1.78
97 98 3.564225 CCCTTCCCTTTACGTTCATATGC 59.436 47.826 0.00 0.00 0.00 3.14
98 99 4.196193 CCTTCCCTTTACGTTCATATGCA 58.804 43.478 0.00 0.00 0.00 3.96
99 100 4.638421 CCTTCCCTTTACGTTCATATGCAA 59.362 41.667 0.00 0.00 0.00 4.08
100 101 5.299279 CCTTCCCTTTACGTTCATATGCAAT 59.701 40.000 0.00 0.00 0.00 3.56
101 102 5.749596 TCCCTTTACGTTCATATGCAATG 57.250 39.130 0.00 0.00 0.00 2.82
102 103 5.189928 TCCCTTTACGTTCATATGCAATGT 58.810 37.500 0.00 13.61 0.00 2.71
103 104 5.650266 TCCCTTTACGTTCATATGCAATGTT 59.350 36.000 14.06 4.25 0.00 2.71
104 105 6.151985 TCCCTTTACGTTCATATGCAATGTTT 59.848 34.615 14.06 0.00 0.00 2.83
105 106 6.811170 CCCTTTACGTTCATATGCAATGTTTT 59.189 34.615 14.06 0.00 0.00 2.43
106 107 7.971168 CCCTTTACGTTCATATGCAATGTTTTA 59.029 33.333 14.06 0.52 0.00 1.52
107 108 8.794406 CCTTTACGTTCATATGCAATGTTTTAC 58.206 33.333 14.06 0.00 0.00 2.01
108 109 9.554724 CTTTACGTTCATATGCAATGTTTTACT 57.445 29.630 14.06 0.00 0.00 2.24
109 110 9.900710 TTTACGTTCATATGCAATGTTTTACTT 57.099 25.926 14.06 0.00 0.00 2.24
110 111 9.900710 TTACGTTCATATGCAATGTTTTACTTT 57.099 25.926 14.06 0.00 0.00 2.66
111 112 8.447787 ACGTTCATATGCAATGTTTTACTTTC 57.552 30.769 0.00 0.00 0.00 2.62
112 113 7.540745 ACGTTCATATGCAATGTTTTACTTTCC 59.459 33.333 0.00 0.00 0.00 3.13
113 114 7.253288 CGTTCATATGCAATGTTTTACTTTCCG 60.253 37.037 0.00 0.00 0.00 4.30
114 115 6.033341 TCATATGCAATGTTTTACTTTCCGC 58.967 36.000 0.00 0.00 0.00 5.54
115 116 4.519540 ATGCAATGTTTTACTTTCCGCT 57.480 36.364 0.00 0.00 0.00 5.52
116 117 3.637432 TGCAATGTTTTACTTTCCGCTG 58.363 40.909 0.00 0.00 0.00 5.18
117 118 2.408368 GCAATGTTTTACTTTCCGCTGC 59.592 45.455 0.00 0.00 0.00 5.25
118 119 3.857010 GCAATGTTTTACTTTCCGCTGCT 60.857 43.478 0.00 0.00 0.00 4.24
119 120 4.614993 GCAATGTTTTACTTTCCGCTGCTA 60.615 41.667 0.00 0.00 0.00 3.49
120 121 4.680171 ATGTTTTACTTTCCGCTGCTAC 57.320 40.909 0.00 0.00 0.00 3.58
121 122 3.468770 TGTTTTACTTTCCGCTGCTACA 58.531 40.909 0.00 0.00 0.00 2.74
122 123 3.249080 TGTTTTACTTTCCGCTGCTACAC 59.751 43.478 0.00 0.00 0.00 2.90
123 124 3.396260 TTTACTTTCCGCTGCTACACT 57.604 42.857 0.00 0.00 0.00 3.55
124 125 2.649331 TACTTTCCGCTGCTACACTC 57.351 50.000 0.00 0.00 0.00 3.51
125 126 0.969894 ACTTTCCGCTGCTACACTCT 59.030 50.000 0.00 0.00 0.00 3.24
126 127 1.344763 ACTTTCCGCTGCTACACTCTT 59.655 47.619 0.00 0.00 0.00 2.85
127 128 2.561419 ACTTTCCGCTGCTACACTCTTA 59.439 45.455 0.00 0.00 0.00 2.10
128 129 2.941453 TTCCGCTGCTACACTCTTAG 57.059 50.000 0.00 0.00 0.00 2.18
129 130 2.124277 TCCGCTGCTACACTCTTAGA 57.876 50.000 0.00 0.00 0.00 2.10
130 131 2.443416 TCCGCTGCTACACTCTTAGAA 58.557 47.619 0.00 0.00 0.00 2.10
131 132 3.024547 TCCGCTGCTACACTCTTAGAAT 58.975 45.455 0.00 0.00 0.00 2.40
132 133 3.447586 TCCGCTGCTACACTCTTAGAATT 59.552 43.478 0.00 0.00 0.00 2.17
133 134 3.553511 CCGCTGCTACACTCTTAGAATTG 59.446 47.826 0.00 0.00 0.00 2.32
134 135 3.000724 CGCTGCTACACTCTTAGAATTGC 59.999 47.826 0.00 0.00 0.00 3.56
135 136 3.935203 GCTGCTACACTCTTAGAATTGCA 59.065 43.478 0.00 0.00 0.00 4.08
136 137 4.574013 GCTGCTACACTCTTAGAATTGCAT 59.426 41.667 0.00 0.00 0.00 3.96
137 138 5.503683 GCTGCTACACTCTTAGAATTGCATG 60.504 44.000 0.00 0.00 0.00 4.06
138 139 5.491070 TGCTACACTCTTAGAATTGCATGT 58.509 37.500 0.00 0.00 0.00 3.21
139 140 5.352293 TGCTACACTCTTAGAATTGCATGTG 59.648 40.000 0.00 0.00 0.00 3.21
140 141 5.352569 GCTACACTCTTAGAATTGCATGTGT 59.647 40.000 6.45 6.45 40.02 3.72
141 142 6.535150 GCTACACTCTTAGAATTGCATGTGTA 59.465 38.462 7.72 7.72 38.23 2.90
142 143 6.974932 ACACTCTTAGAATTGCATGTGTAG 57.025 37.500 0.00 0.00 35.94 2.74
143 144 5.877012 ACACTCTTAGAATTGCATGTGTAGG 59.123 40.000 0.00 0.00 35.94 3.18
144 145 5.877012 CACTCTTAGAATTGCATGTGTAGGT 59.123 40.000 0.00 0.00 0.00 3.08
145 146 6.372659 CACTCTTAGAATTGCATGTGTAGGTT 59.627 38.462 0.00 0.00 0.00 3.50
146 147 6.372659 ACTCTTAGAATTGCATGTGTAGGTTG 59.627 38.462 0.00 0.00 0.00 3.77
147 148 6.472016 TCTTAGAATTGCATGTGTAGGTTGA 58.528 36.000 0.00 0.00 0.00 3.18
148 149 7.112122 TCTTAGAATTGCATGTGTAGGTTGAT 58.888 34.615 0.00 0.00 0.00 2.57
149 150 7.611467 TCTTAGAATTGCATGTGTAGGTTGATT 59.389 33.333 0.00 0.00 0.00 2.57
150 151 5.957798 AGAATTGCATGTGTAGGTTGATTG 58.042 37.500 0.00 0.00 0.00 2.67
151 152 5.477984 AGAATTGCATGTGTAGGTTGATTGT 59.522 36.000 0.00 0.00 0.00 2.71
152 153 5.726980 ATTGCATGTGTAGGTTGATTGTT 57.273 34.783 0.00 0.00 0.00 2.83
153 154 5.528043 TTGCATGTGTAGGTTGATTGTTT 57.472 34.783 0.00 0.00 0.00 2.83
154 155 4.869215 TGCATGTGTAGGTTGATTGTTTG 58.131 39.130 0.00 0.00 0.00 2.93
155 156 4.582240 TGCATGTGTAGGTTGATTGTTTGA 59.418 37.500 0.00 0.00 0.00 2.69
156 157 4.917415 GCATGTGTAGGTTGATTGTTTGAC 59.083 41.667 0.00 0.00 0.00 3.18
157 158 5.278463 GCATGTGTAGGTTGATTGTTTGACT 60.278 40.000 0.00 0.00 0.00 3.41
158 159 6.735694 GCATGTGTAGGTTGATTGTTTGACTT 60.736 38.462 0.00 0.00 0.00 3.01
159 160 6.130298 TGTGTAGGTTGATTGTTTGACTTG 57.870 37.500 0.00 0.00 0.00 3.16
160 161 5.650266 TGTGTAGGTTGATTGTTTGACTTGT 59.350 36.000 0.00 0.00 0.00 3.16
161 162 5.971202 GTGTAGGTTGATTGTTTGACTTGTG 59.029 40.000 0.00 0.00 0.00 3.33
162 163 4.045636 AGGTTGATTGTTTGACTTGTGC 57.954 40.909 0.00 0.00 0.00 4.57
163 164 3.701040 AGGTTGATTGTTTGACTTGTGCT 59.299 39.130 0.00 0.00 0.00 4.40
164 165 4.887071 AGGTTGATTGTTTGACTTGTGCTA 59.113 37.500 0.00 0.00 0.00 3.49
165 166 5.359576 AGGTTGATTGTTTGACTTGTGCTAA 59.640 36.000 0.00 0.00 0.00 3.09
166 167 5.687285 GGTTGATTGTTTGACTTGTGCTAAG 59.313 40.000 0.58 0.58 0.00 2.18
167 168 6.265577 GTTGATTGTTTGACTTGTGCTAAGT 58.734 36.000 6.63 6.63 0.00 2.24
168 169 6.449635 TGATTGTTTGACTTGTGCTAAGTT 57.550 33.333 8.07 0.00 0.00 2.66
169 170 6.264832 TGATTGTTTGACTTGTGCTAAGTTG 58.735 36.000 8.07 0.00 0.00 3.16
170 171 4.027572 TGTTTGACTTGTGCTAAGTTGC 57.972 40.909 8.07 0.00 0.00 4.17
171 172 3.694072 TGTTTGACTTGTGCTAAGTTGCT 59.306 39.130 8.07 0.00 0.00 3.91
172 173 4.878971 TGTTTGACTTGTGCTAAGTTGCTA 59.121 37.500 8.07 0.00 0.00 3.49
173 174 5.355630 TGTTTGACTTGTGCTAAGTTGCTAA 59.644 36.000 8.07 0.00 0.00 3.09
174 175 6.127869 TGTTTGACTTGTGCTAAGTTGCTAAA 60.128 34.615 8.07 6.01 0.00 1.85
175 176 6.443934 TTGACTTGTGCTAAGTTGCTAAAA 57.556 33.333 8.07 0.00 0.00 1.52
176 177 6.633500 TGACTTGTGCTAAGTTGCTAAAAT 57.367 33.333 8.07 0.00 0.00 1.82
177 178 6.668323 TGACTTGTGCTAAGTTGCTAAAATC 58.332 36.000 8.07 0.00 0.00 2.17
178 179 6.486657 TGACTTGTGCTAAGTTGCTAAAATCT 59.513 34.615 8.07 0.00 0.00 2.40
179 180 6.672147 ACTTGTGCTAAGTTGCTAAAATCTG 58.328 36.000 1.75 0.00 0.00 2.90
180 181 6.263168 ACTTGTGCTAAGTTGCTAAAATCTGT 59.737 34.615 1.75 0.00 0.00 3.41
181 182 6.241207 TGTGCTAAGTTGCTAAAATCTGTC 57.759 37.500 0.00 0.00 0.00 3.51
182 183 5.762711 TGTGCTAAGTTGCTAAAATCTGTCA 59.237 36.000 0.00 0.00 0.00 3.58
183 184 6.262049 TGTGCTAAGTTGCTAAAATCTGTCAA 59.738 34.615 0.00 0.00 0.00 3.18
184 185 6.798959 GTGCTAAGTTGCTAAAATCTGTCAAG 59.201 38.462 0.00 0.00 0.00 3.02
185 186 6.710295 TGCTAAGTTGCTAAAATCTGTCAAGA 59.290 34.615 0.00 0.00 36.69 3.02
186 187 7.018235 GCTAAGTTGCTAAAATCTGTCAAGAC 58.982 38.462 0.00 0.00 34.48 3.01
187 188 7.095017 GCTAAGTTGCTAAAATCTGTCAAGACT 60.095 37.037 1.53 0.00 34.48 3.24
188 189 7.573968 AAGTTGCTAAAATCTGTCAAGACTT 57.426 32.000 1.53 0.00 34.48 3.01
189 190 8.677148 AAGTTGCTAAAATCTGTCAAGACTTA 57.323 30.769 1.53 0.00 34.48 2.24
190 191 8.677148 AGTTGCTAAAATCTGTCAAGACTTAA 57.323 30.769 1.53 0.00 34.48 1.85
191 192 9.120538 AGTTGCTAAAATCTGTCAAGACTTAAA 57.879 29.630 1.53 0.00 34.48 1.52
192 193 9.730420 GTTGCTAAAATCTGTCAAGACTTAAAA 57.270 29.630 1.53 0.00 34.48 1.52
205 206 9.193133 GTCAAGACTTAAAAATTAGGAAAAGGC 57.807 33.333 0.00 0.00 0.00 4.35
206 207 9.143155 TCAAGACTTAAAAATTAGGAAAAGGCT 57.857 29.630 0.00 0.00 33.78 4.58
221 222 8.435931 AGGAAAAGGCTAGATTTTTATTTGGT 57.564 30.769 0.00 0.00 30.22 3.67
222 223 8.531982 AGGAAAAGGCTAGATTTTTATTTGGTC 58.468 33.333 0.00 0.00 30.22 4.02
223 224 8.311109 GGAAAAGGCTAGATTTTTATTTGGTCA 58.689 33.333 0.00 0.00 30.22 4.02
224 225 9.705290 GAAAAGGCTAGATTTTTATTTGGTCAA 57.295 29.630 0.00 0.00 30.22 3.18
225 226 9.710900 AAAAGGCTAGATTTTTATTTGGTCAAG 57.289 29.630 0.00 0.00 0.00 3.02
226 227 8.422577 AAGGCTAGATTTTTATTTGGTCAAGT 57.577 30.769 0.00 0.00 0.00 3.16
227 228 9.528489 AAGGCTAGATTTTTATTTGGTCAAGTA 57.472 29.630 0.00 0.00 0.00 2.24
228 229 9.528489 AGGCTAGATTTTTATTTGGTCAAGTAA 57.472 29.630 0.00 0.00 0.00 2.24
239 240 7.881775 ATTTGGTCAAGTAATCTAATCACCC 57.118 36.000 0.00 0.00 0.00 4.61
240 241 5.367945 TGGTCAAGTAATCTAATCACCCC 57.632 43.478 0.00 0.00 0.00 4.95
241 242 4.165372 TGGTCAAGTAATCTAATCACCCCC 59.835 45.833 0.00 0.00 0.00 5.40
242 243 4.412528 GGTCAAGTAATCTAATCACCCCCT 59.587 45.833 0.00 0.00 0.00 4.79
243 244 5.104067 GGTCAAGTAATCTAATCACCCCCTT 60.104 44.000 0.00 0.00 0.00 3.95
244 245 6.100714 GGTCAAGTAATCTAATCACCCCCTTA 59.899 42.308 0.00 0.00 0.00 2.69
245 246 7.217906 GTCAAGTAATCTAATCACCCCCTTAG 58.782 42.308 0.00 0.00 0.00 2.18
246 247 7.070821 GTCAAGTAATCTAATCACCCCCTTAGA 59.929 40.741 0.00 0.00 38.10 2.10
247 248 6.997942 AGTAATCTAATCACCCCCTTAGAC 57.002 41.667 0.00 0.00 36.93 2.59
248 249 5.845065 AGTAATCTAATCACCCCCTTAGACC 59.155 44.000 0.00 0.00 36.93 3.85
249 250 4.578149 ATCTAATCACCCCCTTAGACCT 57.422 45.455 0.00 0.00 36.93 3.85
250 251 5.698369 ATCTAATCACCCCCTTAGACCTA 57.302 43.478 0.00 0.00 36.93 3.08
251 252 4.812653 TCTAATCACCCCCTTAGACCTAC 58.187 47.826 0.00 0.00 30.88 3.18
252 253 3.797671 AATCACCCCCTTAGACCTACT 57.202 47.619 0.00 0.00 0.00 2.57
253 254 3.797671 ATCACCCCCTTAGACCTACTT 57.202 47.619 0.00 0.00 0.00 2.24
254 255 3.572661 TCACCCCCTTAGACCTACTTT 57.427 47.619 0.00 0.00 0.00 2.66
255 256 3.447950 TCACCCCCTTAGACCTACTTTC 58.552 50.000 0.00 0.00 0.00 2.62
256 257 2.167900 CACCCCCTTAGACCTACTTTCG 59.832 54.545 0.00 0.00 0.00 3.46
257 258 2.043526 ACCCCCTTAGACCTACTTTCGA 59.956 50.000 0.00 0.00 0.00 3.71
258 259 3.306613 CCCCCTTAGACCTACTTTCGAT 58.693 50.000 0.00 0.00 0.00 3.59
259 260 3.321396 CCCCCTTAGACCTACTTTCGATC 59.679 52.174 0.00 0.00 0.00 3.69
260 261 3.321396 CCCCTTAGACCTACTTTCGATCC 59.679 52.174 0.00 0.00 0.00 3.36
261 262 4.216708 CCCTTAGACCTACTTTCGATCCT 58.783 47.826 0.00 0.00 0.00 3.24
262 263 5.383476 CCCTTAGACCTACTTTCGATCCTA 58.617 45.833 0.00 0.00 0.00 2.94
263 264 5.241285 CCCTTAGACCTACTTTCGATCCTAC 59.759 48.000 0.00 0.00 0.00 3.18
264 265 5.826737 CCTTAGACCTACTTTCGATCCTACA 59.173 44.000 0.00 0.00 0.00 2.74
265 266 6.320672 CCTTAGACCTACTTTCGATCCTACAA 59.679 42.308 0.00 0.00 0.00 2.41
266 267 5.838531 AGACCTACTTTCGATCCTACAAG 57.161 43.478 0.00 0.00 0.00 3.16
267 268 4.645588 AGACCTACTTTCGATCCTACAAGG 59.354 45.833 0.00 0.00 36.46 3.61
279 280 4.354208 TCCTACAAGGAGAAATCCCTCT 57.646 45.455 0.00 0.00 40.06 3.69
280 281 4.033709 TCCTACAAGGAGAAATCCCTCTG 58.966 47.826 0.00 0.00 40.06 3.35
281 282 3.777522 CCTACAAGGAGAAATCCCTCTGT 59.222 47.826 0.00 0.00 37.67 3.41
282 283 3.990959 ACAAGGAGAAATCCCTCTGTC 57.009 47.619 0.00 0.00 32.57 3.51
283 284 3.251484 ACAAGGAGAAATCCCTCTGTCA 58.749 45.455 0.00 0.00 32.57 3.58
284 285 3.008485 ACAAGGAGAAATCCCTCTGTCAC 59.992 47.826 0.00 0.00 32.57 3.67
285 286 2.192263 AGGAGAAATCCCTCTGTCACC 58.808 52.381 0.00 0.00 33.79 4.02
286 287 1.210722 GGAGAAATCCCTCTGTCACCC 59.789 57.143 0.00 0.00 33.79 4.61
287 288 0.905357 AGAAATCCCTCTGTCACCCG 59.095 55.000 0.00 0.00 0.00 5.28
288 289 0.744771 GAAATCCCTCTGTCACCCGC 60.745 60.000 0.00 0.00 0.00 6.13
289 290 2.521958 AAATCCCTCTGTCACCCGCG 62.522 60.000 0.00 0.00 0.00 6.46
303 304 3.501396 CGCGGAAGTGGCATGAAT 58.499 55.556 0.00 0.00 38.12 2.57
307 308 1.452110 CGGAAGTGGCATGAATGACA 58.548 50.000 0.00 0.00 45.19 3.58
319 320 3.421919 TGAATGACATGAAGCAGTGGA 57.578 42.857 0.00 0.00 0.00 4.02
320 321 3.753815 TGAATGACATGAAGCAGTGGAA 58.246 40.909 0.00 0.00 0.00 3.53
322 323 4.157105 TGAATGACATGAAGCAGTGGAATG 59.843 41.667 0.00 0.00 0.00 2.67
330 331 3.519107 TGAAGCAGTGGAATGGAGTATCA 59.481 43.478 0.00 0.00 36.25 2.15
331 332 3.550437 AGCAGTGGAATGGAGTATCAC 57.450 47.619 0.00 0.00 36.25 3.06
343 344 4.517285 TGGAGTATCACCAGATTTTCTGC 58.483 43.478 0.00 0.00 39.17 4.26
347 348 5.564550 AGTATCACCAGATTTTCTGCAAGT 58.435 37.500 0.00 0.00 42.98 3.16
411 412 9.043079 GGCTGAGGAGTACTACAAAATTAATAC 57.957 37.037 8.10 0.00 0.00 1.89
420 421 7.875327 ACTACAAAATTAATACCGATGGCTT 57.125 32.000 0.00 0.00 0.00 4.35
425 426 8.962679 ACAAAATTAATACCGATGGCTTCTTTA 58.037 29.630 0.00 0.00 0.00 1.85
454 455 2.599032 CAGCATGCAGGATGGGGA 59.401 61.111 21.98 0.00 35.86 4.81
463 464 4.222847 GGATGGGGAGTCGCGGTC 62.223 72.222 6.13 3.15 0.00 4.79
571 576 2.229543 CACATGCCATAAACACTGCAGT 59.770 45.455 15.25 15.25 37.12 4.40
578 583 3.935203 CCATAAACACTGCAGTAGACCTG 59.065 47.826 21.20 14.02 44.53 4.00
591 596 1.993391 GACCTGGGAATGGTCCGGA 60.993 63.158 0.00 0.00 46.04 5.14
605 610 0.902531 TCCGGATGGAGTTTGAGACC 59.097 55.000 0.00 0.00 40.17 3.85
622 627 0.687354 ACCGATTCACAGCTTCTGGT 59.313 50.000 0.00 0.00 35.51 4.00
626 631 2.679059 CGATTCACAGCTTCTGGTGGAT 60.679 50.000 2.42 0.00 45.14 3.41
629 634 1.376424 ACAGCTTCTGGTGGATGCG 60.376 57.895 0.00 0.00 45.92 4.73
639 644 1.488393 TGGTGGATGCGTTGGATATGA 59.512 47.619 0.00 0.00 0.00 2.15
647 652 2.158957 TGCGTTGGATATGAGGAAGGTC 60.159 50.000 0.00 0.00 0.00 3.85
659 664 2.035940 AAGGTCGACTCCTCGGCT 59.964 61.111 16.46 0.00 44.36 5.52
666 671 1.734137 GACTCCTCGGCTTATGCGA 59.266 57.895 0.00 0.00 40.82 5.10
701 706 7.458397 AGGACATGAAATACCAACTGAAACTA 58.542 34.615 0.00 0.00 0.00 2.24
709 714 8.706322 AAATACCAACTGAAACTATGGTTCTT 57.294 30.769 1.16 0.00 43.47 2.52
742 751 4.380841 TTTCAGTATGTAGGCGTAGTGG 57.619 45.455 0.00 0.00 37.84 4.00
743 752 3.008835 TCAGTATGTAGGCGTAGTGGT 57.991 47.619 0.00 0.00 37.84 4.16
746 755 5.135383 TCAGTATGTAGGCGTAGTGGTAAT 58.865 41.667 0.00 0.00 37.84 1.89
752 761 4.949238 TGTAGGCGTAGTGGTAATTCTGTA 59.051 41.667 0.00 0.00 0.00 2.74
764 773 6.256757 GTGGTAATTCTGTAGCTCATGAACTC 59.743 42.308 0.90 0.00 0.00 3.01
770 779 1.929836 GTAGCTCATGAACTCGCCAAG 59.070 52.381 0.90 0.00 0.00 3.61
771 780 0.322975 AGCTCATGAACTCGCCAAGT 59.677 50.000 0.00 0.00 41.10 3.16
772 781 0.723981 GCTCATGAACTCGCCAAGTC 59.276 55.000 0.00 0.00 37.17 3.01
882 893 5.643777 CCTCACCACAGTTAAGTAATGAAGG 59.356 44.000 0.00 0.00 0.00 3.46
978 989 0.392706 ACTGATTGCTGACGTCACCA 59.607 50.000 15.76 12.34 0.00 4.17
1041 2175 1.307866 ATCGTCCCATCCAACCCCT 60.308 57.895 0.00 0.00 0.00 4.79
1052 2186 2.776526 AACCCCTGAGCACCACCA 60.777 61.111 0.00 0.00 0.00 4.17
1096 2230 1.079750 GGTCGTCTCCACCTTCAGC 60.080 63.158 0.00 0.00 0.00 4.26
1176 2311 0.887933 ATTCTTGCGGCGATTTGGTT 59.112 45.000 12.98 0.00 0.00 3.67
1371 2506 2.996621 CGAGAACTTGGAATCGCTTCTT 59.003 45.455 0.00 0.00 0.00 2.52
1437 2572 5.198965 AGATTCCGCTGTTTAGTACTCCTA 58.801 41.667 0.00 0.00 0.00 2.94
1438 2573 5.834204 AGATTCCGCTGTTTAGTACTCCTAT 59.166 40.000 0.00 0.00 0.00 2.57
1439 2574 7.002879 AGATTCCGCTGTTTAGTACTCCTATA 58.997 38.462 0.00 0.00 0.00 1.31
1470 4080 1.282157 GCAGTCCCACTCCCTACAAAT 59.718 52.381 0.00 0.00 0.00 2.32
1586 4198 6.476706 ACAAAGAAATAACAGAACAGCTTTGC 59.523 34.615 0.00 0.00 42.63 3.68
1590 4202 5.880054 AATAACAGAACAGCTTTGCGTAT 57.120 34.783 0.00 0.00 0.00 3.06
1598 4210 4.083581 ACAGCTTTGCGTATGATGAAAC 57.916 40.909 0.00 0.00 0.00 2.78
1604 4216 2.627945 TGCGTATGATGAAACTGGTCC 58.372 47.619 0.00 0.00 0.00 4.46
1606 4218 2.609459 GCGTATGATGAAACTGGTCCAG 59.391 50.000 17.88 17.88 37.52 3.86
1626 4238 2.427453 AGCTTGTTACGACGATGGATCT 59.573 45.455 0.00 0.00 0.00 2.75
1657 4269 5.801350 CACAGACGTGATAAAATGGATGT 57.199 39.130 0.00 0.00 46.80 3.06
1722 4342 1.402968 CGCACAGAAATGCTTATGCCT 59.597 47.619 0.00 0.00 43.80 4.75
1733 4353 5.664294 ATGCTTATGCCTCAACATTCAAA 57.336 34.783 0.00 0.00 38.71 2.69
1911 5393 1.140816 GCGAAGTTAGATCCATCGGC 58.859 55.000 0.00 0.00 34.29 5.54
1919 5401 0.399091 AGATCCATCGGCCTCCTGAA 60.399 55.000 0.00 0.00 0.00 3.02
1977 5459 9.695526 TTGTTCTTGAGATGGATTTTATTGTTG 57.304 29.630 0.00 0.00 0.00 3.33
1980 5462 9.527157 TTCTTGAGATGGATTTTATTGTTGGTA 57.473 29.630 0.00 0.00 0.00 3.25
2000 5482 8.410912 GTTGGTACATCTATTTTAAACCCCATC 58.589 37.037 0.00 0.00 39.30 3.51
2001 5483 7.644062 TGGTACATCTATTTTAAACCCCATCA 58.356 34.615 0.00 0.00 0.00 3.07
2188 5671 1.938625 CAAAAGGTTTGTGCCCACAG 58.061 50.000 1.02 0.00 42.94 3.66
2297 5780 4.083324 TCGTGCTAAAAATCCAAGCTTCAG 60.083 41.667 0.00 0.00 37.16 3.02
2361 5844 6.025539 TGATCCATAGCCAATACAGGTAGAT 58.974 40.000 0.00 0.00 0.00 1.98
2374 5858 5.051409 ACAGGTAGATAGACTAGTCCCAC 57.949 47.826 19.38 10.43 0.00 4.61
2393 5877 0.034059 CGCACCCAGCTAATAGAGGG 59.966 60.000 14.28 14.28 46.96 4.30
2903 6408 6.635030 ATTGTCTACCTGGAAAGTTGTTTC 57.365 37.500 0.00 0.00 41.35 2.78
2953 6458 8.715088 ACTTGGACGTTTTCATAGTAACATAAC 58.285 33.333 0.00 0.00 0.00 1.89
2977 6482 6.766467 ACGAGGATAATCCATGGTACTTTTTC 59.234 38.462 12.58 6.53 39.61 2.29
3137 6642 9.944376 TCTGGATATGGTTAATTACAATCTAGC 57.056 33.333 0.00 0.00 0.00 3.42
3140 6645 9.944376 GGATATGGTTAATTACAATCTAGCTGA 57.056 33.333 0.00 0.00 0.00 4.26
3168 6673 6.694447 AGAAAATGCATACAAACATTGAGCT 58.306 32.000 0.00 0.00 36.64 4.09
3215 6720 4.644685 TGCATAATTTCTTCCCTACAAGGC 59.355 41.667 0.00 0.00 32.73 4.35
3318 6823 3.944087 ACTGTTAGCTCAGAATGTTCCC 58.056 45.455 9.28 0.00 38.63 3.97
3380 6885 6.558009 TCAGTGAAAATGAGAATGCAATAGC 58.442 36.000 0.00 0.00 35.16 2.97
3608 7114 2.031516 CGTGGGAGAGCTTGCTGTG 61.032 63.158 0.00 0.00 0.00 3.66
3714 7220 2.178106 CTGGGGTAGTAGATCCCTGTCT 59.822 54.545 0.00 0.00 43.00 3.41
3746 7252 1.370437 CCACAGTGCTGTCTCTGCT 59.630 57.895 1.31 0.00 42.83 4.24
3771 7277 1.329171 TGCTTTTGTTGGCTGCACCT 61.329 50.000 0.50 0.00 40.22 4.00
3818 7324 5.297776 CCTGTTCTTAACTTCCCTGCATATG 59.702 44.000 0.00 0.00 0.00 1.78
3819 7325 5.192927 TGTTCTTAACTTCCCTGCATATGG 58.807 41.667 4.56 0.00 0.00 2.74
3912 7418 9.605275 TCTTCACTAGGATATGAACAATCTTTG 57.395 33.333 0.00 0.00 31.62 2.77
3915 7421 7.987458 TCACTAGGATATGAACAATCTTTGGAC 59.013 37.037 0.00 0.00 34.12 4.02
3969 7475 7.031975 GGAATCTACCAAATTGAAAGCTTCAG 58.968 38.462 0.00 0.00 41.38 3.02
4066 7572 2.777960 AACAAAGGCTGGGGAGGCA 61.778 57.895 0.00 0.00 36.76 4.75
4146 7652 2.907042 CCTCTTGGTTGGTACCTCTCTT 59.093 50.000 14.36 0.00 45.27 2.85
4172 7678 5.259252 TCCCCAACCCTGGTATATATAGCTA 59.741 44.000 19.79 0.00 41.72 3.32
4173 7679 5.602978 CCCCAACCCTGGTATATATAGCTAG 59.397 48.000 19.79 15.08 41.72 3.42
4230 7736 0.319813 CACACGGACTGCACATCTGA 60.320 55.000 8.71 0.00 0.00 3.27
4259 7765 5.578005 ATGAATGATTTGACAAGCTCCTG 57.422 39.130 0.00 0.00 0.00 3.86
4286 7792 8.781196 CAGAGGATCATGAACGATTTTATTCAT 58.219 33.333 0.00 0.00 44.52 2.57
4415 7922 2.304092 CTGTCCTATGGCAGTACCGTA 58.696 52.381 0.00 0.00 43.94 4.02
4551 8093 2.036346 GCTTGTCTGGTTGCAAAGGATT 59.964 45.455 0.00 0.00 0.00 3.01
4583 8125 6.587608 GCCATGAACTTATTTTGAACTCCTTG 59.412 38.462 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.737219 AGGTGGTGCTATCGTACGTC 59.263 55.000 16.05 4.10 0.00 4.34
4 5 2.412455 CGATAGGTGGTGCTATCGTACG 60.412 54.545 9.53 9.53 45.51 3.67
5 6 3.198863 CGATAGGTGGTGCTATCGTAC 57.801 52.381 3.96 0.00 45.51 3.67
20 21 1.444836 TTTTGGCGTGGTTCCGATAG 58.555 50.000 0.00 0.00 0.00 2.08
21 22 1.893544 TTTTTGGCGTGGTTCCGATA 58.106 45.000 0.00 0.00 0.00 2.92
22 23 1.201414 GATTTTTGGCGTGGTTCCGAT 59.799 47.619 0.00 0.00 0.00 4.18
23 24 0.594110 GATTTTTGGCGTGGTTCCGA 59.406 50.000 0.00 0.00 0.00 4.55
24 25 0.596082 AGATTTTTGGCGTGGTTCCG 59.404 50.000 0.00 0.00 0.00 4.30
25 26 1.067846 GGAGATTTTTGGCGTGGTTCC 60.068 52.381 0.00 0.00 0.00 3.62
26 27 1.401018 CGGAGATTTTTGGCGTGGTTC 60.401 52.381 0.00 0.00 0.00 3.62
27 28 0.596082 CGGAGATTTTTGGCGTGGTT 59.404 50.000 0.00 0.00 0.00 3.67
28 29 0.536460 ACGGAGATTTTTGGCGTGGT 60.536 50.000 0.00 0.00 0.00 4.16
29 30 1.444836 TACGGAGATTTTTGGCGTGG 58.555 50.000 0.00 0.00 0.00 4.94
30 31 2.936498 AGATACGGAGATTTTTGGCGTG 59.064 45.455 0.00 0.00 0.00 5.34
31 32 3.261981 AGATACGGAGATTTTTGGCGT 57.738 42.857 0.00 0.00 0.00 5.68
32 33 4.116961 TGTAGATACGGAGATTTTTGGCG 58.883 43.478 0.00 0.00 0.00 5.69
33 34 6.038271 ACAATGTAGATACGGAGATTTTTGGC 59.962 38.462 0.00 0.00 0.00 4.52
34 35 7.065803 ACACAATGTAGATACGGAGATTTTTGG 59.934 37.037 0.00 0.00 0.00 3.28
35 36 7.974675 ACACAATGTAGATACGGAGATTTTTG 58.025 34.615 0.00 0.00 0.00 2.44
36 37 8.561738 AACACAATGTAGATACGGAGATTTTT 57.438 30.769 0.00 0.00 0.00 1.94
37 38 8.450964 CAAACACAATGTAGATACGGAGATTTT 58.549 33.333 0.00 0.00 0.00 1.82
38 39 7.414098 GCAAACACAATGTAGATACGGAGATTT 60.414 37.037 0.00 0.00 0.00 2.17
39 40 6.037172 GCAAACACAATGTAGATACGGAGATT 59.963 38.462 0.00 0.00 0.00 2.40
40 41 5.523916 GCAAACACAATGTAGATACGGAGAT 59.476 40.000 0.00 0.00 0.00 2.75
41 42 4.868171 GCAAACACAATGTAGATACGGAGA 59.132 41.667 0.00 0.00 0.00 3.71
42 43 4.034048 GGCAAACACAATGTAGATACGGAG 59.966 45.833 0.00 0.00 0.00 4.63
43 44 3.936453 GGCAAACACAATGTAGATACGGA 59.064 43.478 0.00 0.00 0.00 4.69
44 45 3.938963 AGGCAAACACAATGTAGATACGG 59.061 43.478 0.00 0.00 0.00 4.02
45 46 5.351465 AGAAGGCAAACACAATGTAGATACG 59.649 40.000 0.00 0.00 0.00 3.06
46 47 6.183360 GGAGAAGGCAAACACAATGTAGATAC 60.183 42.308 0.00 0.00 0.00 2.24
47 48 5.880332 GGAGAAGGCAAACACAATGTAGATA 59.120 40.000 0.00 0.00 0.00 1.98
48 49 4.702131 GGAGAAGGCAAACACAATGTAGAT 59.298 41.667 0.00 0.00 0.00 1.98
49 50 4.072131 GGAGAAGGCAAACACAATGTAGA 58.928 43.478 0.00 0.00 0.00 2.59
50 51 3.820467 TGGAGAAGGCAAACACAATGTAG 59.180 43.478 0.00 0.00 0.00 2.74
51 52 3.826524 TGGAGAAGGCAAACACAATGTA 58.173 40.909 0.00 0.00 0.00 2.29
52 53 2.665165 TGGAGAAGGCAAACACAATGT 58.335 42.857 0.00 0.00 0.00 2.71
53 54 3.731652 TTGGAGAAGGCAAACACAATG 57.268 42.857 0.00 0.00 0.00 2.82
54 55 3.181466 GGTTTGGAGAAGGCAAACACAAT 60.181 43.478 1.73 0.00 39.70 2.71
55 56 2.167487 GGTTTGGAGAAGGCAAACACAA 59.833 45.455 1.73 0.00 39.70 3.33
56 57 1.754226 GGTTTGGAGAAGGCAAACACA 59.246 47.619 1.73 0.00 39.70 3.72
57 58 1.068588 GGGTTTGGAGAAGGCAAACAC 59.931 52.381 1.73 0.00 39.70 3.32
58 59 1.063266 AGGGTTTGGAGAAGGCAAACA 60.063 47.619 1.73 0.00 39.70 2.83
59 60 1.704641 AGGGTTTGGAGAAGGCAAAC 58.295 50.000 0.00 0.00 37.89 2.93
60 61 2.316108 GAAGGGTTTGGAGAAGGCAAA 58.684 47.619 0.00 0.00 0.00 3.68
61 62 1.480498 GGAAGGGTTTGGAGAAGGCAA 60.480 52.381 0.00 0.00 0.00 4.52
62 63 0.112412 GGAAGGGTTTGGAGAAGGCA 59.888 55.000 0.00 0.00 0.00 4.75
63 64 0.612174 GGGAAGGGTTTGGAGAAGGC 60.612 60.000 0.00 0.00 0.00 4.35
64 65 1.076438 AGGGAAGGGTTTGGAGAAGG 58.924 55.000 0.00 0.00 0.00 3.46
65 66 2.980246 AAGGGAAGGGTTTGGAGAAG 57.020 50.000 0.00 0.00 0.00 2.85
66 67 3.497227 CGTAAAGGGAAGGGTTTGGAGAA 60.497 47.826 0.00 0.00 0.00 2.87
67 68 2.039348 CGTAAAGGGAAGGGTTTGGAGA 59.961 50.000 0.00 0.00 0.00 3.71
68 69 2.224695 ACGTAAAGGGAAGGGTTTGGAG 60.225 50.000 0.00 0.00 0.00 3.86
69 70 1.776063 ACGTAAAGGGAAGGGTTTGGA 59.224 47.619 0.00 0.00 0.00 3.53
70 71 2.281539 ACGTAAAGGGAAGGGTTTGG 57.718 50.000 0.00 0.00 0.00 3.28
71 72 3.215975 TGAACGTAAAGGGAAGGGTTTG 58.784 45.455 0.00 0.00 0.00 2.93
72 73 3.581265 TGAACGTAAAGGGAAGGGTTT 57.419 42.857 0.00 0.00 0.00 3.27
73 74 3.801307 ATGAACGTAAAGGGAAGGGTT 57.199 42.857 0.00 0.00 0.00 4.11
74 75 4.777463 CATATGAACGTAAAGGGAAGGGT 58.223 43.478 0.00 0.00 0.00 4.34
75 76 3.564225 GCATATGAACGTAAAGGGAAGGG 59.436 47.826 6.97 0.00 0.00 3.95
76 77 4.196193 TGCATATGAACGTAAAGGGAAGG 58.804 43.478 6.97 0.00 0.00 3.46
77 78 5.811399 TTGCATATGAACGTAAAGGGAAG 57.189 39.130 6.97 0.00 0.00 3.46
78 79 5.650266 ACATTGCATATGAACGTAAAGGGAA 59.350 36.000 6.97 0.00 0.00 3.97
79 80 5.189928 ACATTGCATATGAACGTAAAGGGA 58.810 37.500 6.97 0.00 0.00 4.20
80 81 5.499139 ACATTGCATATGAACGTAAAGGG 57.501 39.130 6.97 0.00 0.00 3.95
81 82 7.810766 AAAACATTGCATATGAACGTAAAGG 57.189 32.000 6.97 0.00 0.00 3.11
82 83 9.554724 AGTAAAACATTGCATATGAACGTAAAG 57.445 29.630 6.97 0.00 0.00 1.85
83 84 9.900710 AAGTAAAACATTGCATATGAACGTAAA 57.099 25.926 6.97 0.00 0.00 2.01
84 85 9.900710 AAAGTAAAACATTGCATATGAACGTAA 57.099 25.926 6.97 0.00 0.00 3.18
85 86 9.549509 GAAAGTAAAACATTGCATATGAACGTA 57.450 29.630 6.97 0.00 0.00 3.57
86 87 7.540745 GGAAAGTAAAACATTGCATATGAACGT 59.459 33.333 6.97 0.00 0.00 3.99
87 88 7.253288 CGGAAAGTAAAACATTGCATATGAACG 60.253 37.037 6.97 0.00 0.00 3.95
88 89 7.462724 GCGGAAAGTAAAACATTGCATATGAAC 60.463 37.037 6.97 0.00 0.00 3.18
89 90 6.529829 GCGGAAAGTAAAACATTGCATATGAA 59.470 34.615 6.97 0.00 0.00 2.57
90 91 6.033341 GCGGAAAGTAAAACATTGCATATGA 58.967 36.000 6.97 0.00 0.00 2.15
91 92 6.020440 CAGCGGAAAGTAAAACATTGCATATG 60.020 38.462 0.00 0.00 0.00 1.78
92 93 6.035843 CAGCGGAAAGTAAAACATTGCATAT 58.964 36.000 0.00 0.00 0.00 1.78
93 94 5.398169 CAGCGGAAAGTAAAACATTGCATA 58.602 37.500 0.00 0.00 0.00 3.14
94 95 4.236935 CAGCGGAAAGTAAAACATTGCAT 58.763 39.130 0.00 0.00 0.00 3.96
95 96 3.637432 CAGCGGAAAGTAAAACATTGCA 58.363 40.909 0.00 0.00 0.00 4.08
96 97 2.408368 GCAGCGGAAAGTAAAACATTGC 59.592 45.455 0.00 0.00 0.00 3.56
97 98 3.900941 AGCAGCGGAAAGTAAAACATTG 58.099 40.909 0.00 0.00 0.00 2.82
98 99 4.517453 TGTAGCAGCGGAAAGTAAAACATT 59.483 37.500 0.00 0.00 0.00 2.71
99 100 4.069304 TGTAGCAGCGGAAAGTAAAACAT 58.931 39.130 0.00 0.00 0.00 2.71
100 101 3.249080 GTGTAGCAGCGGAAAGTAAAACA 59.751 43.478 0.00 0.00 0.00 2.83
101 102 3.497262 AGTGTAGCAGCGGAAAGTAAAAC 59.503 43.478 0.00 0.00 0.00 2.43
102 103 3.735591 AGTGTAGCAGCGGAAAGTAAAA 58.264 40.909 0.00 0.00 0.00 1.52
103 104 3.006537 AGAGTGTAGCAGCGGAAAGTAAA 59.993 43.478 0.00 0.00 0.00 2.01
104 105 2.561419 AGAGTGTAGCAGCGGAAAGTAA 59.439 45.455 0.00 0.00 0.00 2.24
105 106 2.168496 AGAGTGTAGCAGCGGAAAGTA 58.832 47.619 0.00 0.00 0.00 2.24
106 107 0.969894 AGAGTGTAGCAGCGGAAAGT 59.030 50.000 0.00 0.00 0.00 2.66
107 108 2.086054 AAGAGTGTAGCAGCGGAAAG 57.914 50.000 0.00 0.00 0.00 2.62
108 109 2.823747 TCTAAGAGTGTAGCAGCGGAAA 59.176 45.455 0.00 0.00 0.00 3.13
109 110 2.443416 TCTAAGAGTGTAGCAGCGGAA 58.557 47.619 0.00 0.00 0.00 4.30
110 111 2.124277 TCTAAGAGTGTAGCAGCGGA 57.876 50.000 0.00 0.00 0.00 5.54
111 112 2.941453 TTCTAAGAGTGTAGCAGCGG 57.059 50.000 0.00 0.00 0.00 5.52
112 113 3.000724 GCAATTCTAAGAGTGTAGCAGCG 59.999 47.826 0.00 0.00 0.00 5.18
113 114 3.935203 TGCAATTCTAAGAGTGTAGCAGC 59.065 43.478 0.00 0.00 0.00 5.25
114 115 5.583854 ACATGCAATTCTAAGAGTGTAGCAG 59.416 40.000 0.00 0.00 32.59 4.24
115 116 5.352293 CACATGCAATTCTAAGAGTGTAGCA 59.648 40.000 0.00 0.00 0.00 3.49
116 117 5.352569 ACACATGCAATTCTAAGAGTGTAGC 59.647 40.000 0.00 0.00 37.22 3.58
117 118 6.974932 ACACATGCAATTCTAAGAGTGTAG 57.025 37.500 0.00 0.00 37.22 2.74
118 119 7.041721 CCTACACATGCAATTCTAAGAGTGTA 58.958 38.462 0.00 0.00 39.42 2.90
119 120 5.877012 CCTACACATGCAATTCTAAGAGTGT 59.123 40.000 0.00 0.00 41.32 3.55
120 121 5.877012 ACCTACACATGCAATTCTAAGAGTG 59.123 40.000 0.00 0.00 0.00 3.51
121 122 6.054860 ACCTACACATGCAATTCTAAGAGT 57.945 37.500 0.00 0.00 0.00 3.24
122 123 6.595326 TCAACCTACACATGCAATTCTAAGAG 59.405 38.462 0.00 0.00 0.00 2.85
123 124 6.472016 TCAACCTACACATGCAATTCTAAGA 58.528 36.000 0.00 0.00 0.00 2.10
124 125 6.741992 TCAACCTACACATGCAATTCTAAG 57.258 37.500 0.00 0.00 0.00 2.18
125 126 7.176515 ACAATCAACCTACACATGCAATTCTAA 59.823 33.333 0.00 0.00 0.00 2.10
126 127 6.658816 ACAATCAACCTACACATGCAATTCTA 59.341 34.615 0.00 0.00 0.00 2.10
127 128 5.477984 ACAATCAACCTACACATGCAATTCT 59.522 36.000 0.00 0.00 0.00 2.40
128 129 5.713025 ACAATCAACCTACACATGCAATTC 58.287 37.500 0.00 0.00 0.00 2.17
129 130 5.726980 ACAATCAACCTACACATGCAATT 57.273 34.783 0.00 0.00 0.00 2.32
130 131 5.726980 AACAATCAACCTACACATGCAAT 57.273 34.783 0.00 0.00 0.00 3.56
131 132 5.068329 TCAAACAATCAACCTACACATGCAA 59.932 36.000 0.00 0.00 0.00 4.08
132 133 4.582240 TCAAACAATCAACCTACACATGCA 59.418 37.500 0.00 0.00 0.00 3.96
133 134 4.917415 GTCAAACAATCAACCTACACATGC 59.083 41.667 0.00 0.00 0.00 4.06
134 135 6.317789 AGTCAAACAATCAACCTACACATG 57.682 37.500 0.00 0.00 0.00 3.21
135 136 6.321181 ACAAGTCAAACAATCAACCTACACAT 59.679 34.615 0.00 0.00 0.00 3.21
136 137 5.650266 ACAAGTCAAACAATCAACCTACACA 59.350 36.000 0.00 0.00 0.00 3.72
137 138 5.971202 CACAAGTCAAACAATCAACCTACAC 59.029 40.000 0.00 0.00 0.00 2.90
138 139 5.449862 GCACAAGTCAAACAATCAACCTACA 60.450 40.000 0.00 0.00 0.00 2.74
139 140 4.976116 GCACAAGTCAAACAATCAACCTAC 59.024 41.667 0.00 0.00 0.00 3.18
140 141 4.887071 AGCACAAGTCAAACAATCAACCTA 59.113 37.500 0.00 0.00 0.00 3.08
141 142 3.701040 AGCACAAGTCAAACAATCAACCT 59.299 39.130 0.00 0.00 0.00 3.50
142 143 4.045636 AGCACAAGTCAAACAATCAACC 57.954 40.909 0.00 0.00 0.00 3.77
143 144 6.265577 ACTTAGCACAAGTCAAACAATCAAC 58.734 36.000 0.00 0.00 0.00 3.18
144 145 6.449635 ACTTAGCACAAGTCAAACAATCAA 57.550 33.333 0.00 0.00 0.00 2.57
145 146 6.264832 CAACTTAGCACAAGTCAAACAATCA 58.735 36.000 4.41 0.00 0.00 2.57
146 147 5.173854 GCAACTTAGCACAAGTCAAACAATC 59.826 40.000 4.41 0.00 0.00 2.67
147 148 5.043248 GCAACTTAGCACAAGTCAAACAAT 58.957 37.500 4.41 0.00 0.00 2.71
148 149 4.157656 AGCAACTTAGCACAAGTCAAACAA 59.842 37.500 4.41 0.00 36.85 2.83
149 150 3.694072 AGCAACTTAGCACAAGTCAAACA 59.306 39.130 4.41 0.00 36.85 2.83
150 151 4.292977 AGCAACTTAGCACAAGTCAAAC 57.707 40.909 4.41 0.00 36.85 2.93
151 152 6.443934 TTTAGCAACTTAGCACAAGTCAAA 57.556 33.333 4.41 1.97 36.85 2.69
152 153 6.443934 TTTTAGCAACTTAGCACAAGTCAA 57.556 33.333 4.41 0.00 36.85 3.18
153 154 6.486657 AGATTTTAGCAACTTAGCACAAGTCA 59.513 34.615 4.41 0.00 36.85 3.41
154 155 6.798959 CAGATTTTAGCAACTTAGCACAAGTC 59.201 38.462 4.41 0.00 36.85 3.01
155 156 6.263168 ACAGATTTTAGCAACTTAGCACAAGT 59.737 34.615 0.00 0.00 36.85 3.16
156 157 6.672147 ACAGATTTTAGCAACTTAGCACAAG 58.328 36.000 0.00 0.00 36.85 3.16
157 158 6.262049 TGACAGATTTTAGCAACTTAGCACAA 59.738 34.615 0.00 0.00 36.85 3.33
158 159 5.762711 TGACAGATTTTAGCAACTTAGCACA 59.237 36.000 0.00 0.00 36.85 4.57
159 160 6.241207 TGACAGATTTTAGCAACTTAGCAC 57.759 37.500 0.00 0.00 36.85 4.40
160 161 6.710295 TCTTGACAGATTTTAGCAACTTAGCA 59.290 34.615 0.00 0.00 36.85 3.49
161 162 7.018235 GTCTTGACAGATTTTAGCAACTTAGC 58.982 38.462 0.00 0.00 0.00 3.09
162 163 8.316640 AGTCTTGACAGATTTTAGCAACTTAG 57.683 34.615 3.49 0.00 0.00 2.18
163 164 8.677148 AAGTCTTGACAGATTTTAGCAACTTA 57.323 30.769 3.49 0.00 0.00 2.24
164 165 7.573968 AAGTCTTGACAGATTTTAGCAACTT 57.426 32.000 3.49 0.00 0.00 2.66
165 166 8.677148 TTAAGTCTTGACAGATTTTAGCAACT 57.323 30.769 3.49 0.00 31.67 3.16
166 167 9.730420 TTTTAAGTCTTGACAGATTTTAGCAAC 57.270 29.630 3.49 0.00 31.67 4.17
179 180 9.193133 GCCTTTTCCTAATTTTTAAGTCTTGAC 57.807 33.333 0.00 0.00 0.00 3.18
180 181 9.143155 AGCCTTTTCCTAATTTTTAAGTCTTGA 57.857 29.630 0.00 0.00 0.00 3.02
195 196 9.541884 ACCAAATAAAAATCTAGCCTTTTCCTA 57.458 29.630 5.25 0.00 0.00 2.94
196 197 8.435931 ACCAAATAAAAATCTAGCCTTTTCCT 57.564 30.769 5.25 0.00 0.00 3.36
197 198 8.311109 TGACCAAATAAAAATCTAGCCTTTTCC 58.689 33.333 5.25 0.00 0.00 3.13
198 199 9.705290 TTGACCAAATAAAAATCTAGCCTTTTC 57.295 29.630 5.25 0.00 0.00 2.29
199 200 9.710900 CTTGACCAAATAAAAATCTAGCCTTTT 57.289 29.630 6.78 6.78 0.00 2.27
200 201 8.870116 ACTTGACCAAATAAAAATCTAGCCTTT 58.130 29.630 0.00 0.00 0.00 3.11
201 202 8.422577 ACTTGACCAAATAAAAATCTAGCCTT 57.577 30.769 0.00 0.00 0.00 4.35
202 203 9.528489 TTACTTGACCAAATAAAAATCTAGCCT 57.472 29.630 0.00 0.00 0.00 4.58
213 214 9.403583 GGGTGATTAGATTACTTGACCAAATAA 57.596 33.333 0.00 0.00 0.00 1.40
214 215 7.996644 GGGGTGATTAGATTACTTGACCAAATA 59.003 37.037 0.00 0.00 0.00 1.40
215 216 6.833933 GGGGTGATTAGATTACTTGACCAAAT 59.166 38.462 0.00 0.00 0.00 2.32
216 217 6.184789 GGGGTGATTAGATTACTTGACCAAA 58.815 40.000 0.00 0.00 0.00 3.28
217 218 5.339695 GGGGGTGATTAGATTACTTGACCAA 60.340 44.000 0.00 0.00 0.00 3.67
218 219 4.165372 GGGGGTGATTAGATTACTTGACCA 59.835 45.833 0.00 0.00 0.00 4.02
219 220 4.412528 AGGGGGTGATTAGATTACTTGACC 59.587 45.833 0.00 0.00 0.00 4.02
220 221 5.632034 AGGGGGTGATTAGATTACTTGAC 57.368 43.478 0.00 0.00 0.00 3.18
221 222 7.070821 GTCTAAGGGGGTGATTAGATTACTTGA 59.929 40.741 0.00 0.00 39.51 3.02
222 223 7.217906 GTCTAAGGGGGTGATTAGATTACTTG 58.782 42.308 0.00 0.00 39.51 3.16
223 224 6.329460 GGTCTAAGGGGGTGATTAGATTACTT 59.671 42.308 0.00 0.00 39.51 2.24
224 225 5.845065 GGTCTAAGGGGGTGATTAGATTACT 59.155 44.000 0.00 0.00 39.51 2.24
225 226 5.845065 AGGTCTAAGGGGGTGATTAGATTAC 59.155 44.000 0.00 0.00 39.51 1.89
226 227 6.051946 AGGTCTAAGGGGGTGATTAGATTA 57.948 41.667 0.00 0.00 39.51 1.75
227 228 4.909284 AGGTCTAAGGGGGTGATTAGATT 58.091 43.478 0.00 0.00 39.51 2.40
228 229 4.578149 AGGTCTAAGGGGGTGATTAGAT 57.422 45.455 0.00 0.00 39.51 1.98
229 230 4.485021 AGTAGGTCTAAGGGGGTGATTAGA 59.515 45.833 0.00 0.00 36.04 2.10
230 231 4.817286 AGTAGGTCTAAGGGGGTGATTAG 58.183 47.826 0.00 0.00 0.00 1.73
231 232 4.913154 AGTAGGTCTAAGGGGGTGATTA 57.087 45.455 0.00 0.00 0.00 1.75
232 233 3.797671 AGTAGGTCTAAGGGGGTGATT 57.202 47.619 0.00 0.00 0.00 2.57
233 234 3.797671 AAGTAGGTCTAAGGGGGTGAT 57.202 47.619 0.00 0.00 0.00 3.06
234 235 3.447950 GAAAGTAGGTCTAAGGGGGTGA 58.552 50.000 0.00 0.00 0.00 4.02
235 236 2.167900 CGAAAGTAGGTCTAAGGGGGTG 59.832 54.545 0.00 0.00 0.00 4.61
236 237 2.043526 TCGAAAGTAGGTCTAAGGGGGT 59.956 50.000 0.00 0.00 0.00 4.95
237 238 2.743553 TCGAAAGTAGGTCTAAGGGGG 58.256 52.381 0.00 0.00 0.00 5.40
238 239 3.321396 GGATCGAAAGTAGGTCTAAGGGG 59.679 52.174 0.00 0.00 0.00 4.79
239 240 4.216708 AGGATCGAAAGTAGGTCTAAGGG 58.783 47.826 0.00 0.00 0.00 3.95
240 241 5.826737 TGTAGGATCGAAAGTAGGTCTAAGG 59.173 44.000 0.00 0.00 0.00 2.69
241 242 6.939132 TGTAGGATCGAAAGTAGGTCTAAG 57.061 41.667 0.00 0.00 0.00 2.18
242 243 6.320672 CCTTGTAGGATCGAAAGTAGGTCTAA 59.679 42.308 0.00 0.00 37.67 2.10
243 244 5.826737 CCTTGTAGGATCGAAAGTAGGTCTA 59.173 44.000 0.00 0.00 37.67 2.59
244 245 4.645588 CCTTGTAGGATCGAAAGTAGGTCT 59.354 45.833 0.00 0.00 37.67 3.85
245 246 4.643784 TCCTTGTAGGATCGAAAGTAGGTC 59.356 45.833 0.00 0.00 40.06 3.85
246 247 4.607239 TCCTTGTAGGATCGAAAGTAGGT 58.393 43.478 0.00 0.00 40.06 3.08
247 248 4.888239 TCTCCTTGTAGGATCGAAAGTAGG 59.112 45.833 0.00 0.00 44.81 3.18
248 249 6.452494 TTCTCCTTGTAGGATCGAAAGTAG 57.548 41.667 0.00 0.00 44.81 2.57
249 250 6.845758 TTTCTCCTTGTAGGATCGAAAGTA 57.154 37.500 0.00 0.00 44.81 2.24
250 251 5.740290 TTTCTCCTTGTAGGATCGAAAGT 57.260 39.130 0.00 0.00 44.81 2.66
251 252 5.755861 GGATTTCTCCTTGTAGGATCGAAAG 59.244 44.000 12.70 0.00 44.81 2.62
252 253 5.396436 GGGATTTCTCCTTGTAGGATCGAAA 60.396 44.000 10.66 10.66 44.81 3.46
253 254 4.101119 GGGATTTCTCCTTGTAGGATCGAA 59.899 45.833 0.00 0.00 44.81 3.71
254 255 3.641906 GGGATTTCTCCTTGTAGGATCGA 59.358 47.826 0.00 0.00 44.81 3.59
255 256 3.643792 AGGGATTTCTCCTTGTAGGATCG 59.356 47.826 0.00 0.00 44.81 3.69
256 257 4.904853 AGAGGGATTTCTCCTTGTAGGATC 59.095 45.833 0.00 0.00 44.81 3.36
257 258 4.657969 CAGAGGGATTTCTCCTTGTAGGAT 59.342 45.833 0.00 0.00 44.81 3.24
258 259 4.033709 CAGAGGGATTTCTCCTTGTAGGA 58.966 47.826 0.00 0.00 43.43 2.94
259 260 3.777522 ACAGAGGGATTTCTCCTTGTAGG 59.222 47.826 0.00 0.00 41.74 3.18
260 261 4.467795 TGACAGAGGGATTTCTCCTTGTAG 59.532 45.833 0.00 0.00 41.74 2.74
261 262 4.223032 GTGACAGAGGGATTTCTCCTTGTA 59.777 45.833 0.00 0.00 41.74 2.41
262 263 3.008485 GTGACAGAGGGATTTCTCCTTGT 59.992 47.826 0.00 0.00 41.74 3.16
263 264 3.604582 GTGACAGAGGGATTTCTCCTTG 58.395 50.000 0.00 0.00 41.74 3.61
264 265 2.573915 GGTGACAGAGGGATTTCTCCTT 59.426 50.000 0.00 0.00 41.74 3.36
265 266 2.192263 GGTGACAGAGGGATTTCTCCT 58.808 52.381 0.00 0.00 41.74 3.69
266 267 1.210722 GGGTGACAGAGGGATTTCTCC 59.789 57.143 0.00 0.00 41.26 3.71
267 268 1.134670 CGGGTGACAGAGGGATTTCTC 60.135 57.143 0.00 0.00 0.00 2.87
268 269 0.905357 CGGGTGACAGAGGGATTTCT 59.095 55.000 0.00 0.00 0.00 2.52
269 270 0.744771 GCGGGTGACAGAGGGATTTC 60.745 60.000 0.00 0.00 0.00 2.17
270 271 1.299976 GCGGGTGACAGAGGGATTT 59.700 57.895 0.00 0.00 0.00 2.17
271 272 2.990479 GCGGGTGACAGAGGGATT 59.010 61.111 0.00 0.00 0.00 3.01
272 273 3.461773 CGCGGGTGACAGAGGGAT 61.462 66.667 0.00 0.00 0.00 3.85
275 276 3.649277 CTTCCGCGGGTGACAGAGG 62.649 68.421 27.83 0.00 46.33 3.69
276 277 2.125912 CTTCCGCGGGTGACAGAG 60.126 66.667 27.83 8.20 0.00 3.35
277 278 2.915659 ACTTCCGCGGGTGACAGA 60.916 61.111 27.83 0.00 0.00 3.41
278 279 2.738521 CACTTCCGCGGGTGACAG 60.739 66.667 27.83 15.56 35.69 3.51
279 280 4.308458 CCACTTCCGCGGGTGACA 62.308 66.667 29.09 7.75 35.69 3.58
284 285 4.776322 TCATGCCACTTCCGCGGG 62.776 66.667 27.83 13.23 0.00 6.13
285 286 2.114670 ATTCATGCCACTTCCGCGG 61.115 57.895 22.12 22.12 0.00 6.46
286 287 1.063006 CATTCATGCCACTTCCGCG 59.937 57.895 0.00 0.00 0.00 6.46
287 288 0.099436 GTCATTCATGCCACTTCCGC 59.901 55.000 0.00 0.00 0.00 5.54
288 289 1.452110 TGTCATTCATGCCACTTCCG 58.548 50.000 0.00 0.00 0.00 4.30
289 290 3.431922 CATGTCATTCATGCCACTTCC 57.568 47.619 0.00 0.00 45.69 3.46
298 299 3.959293 TCCACTGCTTCATGTCATTCAT 58.041 40.909 0.00 0.00 37.22 2.57
299 300 3.421919 TCCACTGCTTCATGTCATTCA 57.578 42.857 0.00 0.00 0.00 2.57
300 301 4.439700 CCATTCCACTGCTTCATGTCATTC 60.440 45.833 0.00 0.00 0.00 2.67
301 302 3.446161 CCATTCCACTGCTTCATGTCATT 59.554 43.478 0.00 0.00 0.00 2.57
303 304 2.040145 TCCATTCCACTGCTTCATGTCA 59.960 45.455 0.00 0.00 0.00 3.58
307 308 4.164796 TGATACTCCATTCCACTGCTTCAT 59.835 41.667 0.00 0.00 0.00 2.57
308 309 3.519107 TGATACTCCATTCCACTGCTTCA 59.481 43.478 0.00 0.00 0.00 3.02
318 319 6.238593 GCAGAAAATCTGGTGATACTCCATTC 60.239 42.308 9.25 0.00 44.43 2.67
319 320 5.591877 GCAGAAAATCTGGTGATACTCCATT 59.408 40.000 9.25 0.00 44.43 3.16
320 321 5.128919 GCAGAAAATCTGGTGATACTCCAT 58.871 41.667 9.25 0.00 44.43 3.41
322 323 4.517285 TGCAGAAAATCTGGTGATACTCC 58.483 43.478 9.25 0.00 44.43 3.85
330 331 2.154462 CCGACTTGCAGAAAATCTGGT 58.846 47.619 9.25 0.00 44.43 4.00
331 332 1.135575 GCCGACTTGCAGAAAATCTGG 60.136 52.381 9.25 0.00 44.43 3.86
343 344 2.163818 TAGGTTTGTCAGCCGACTTG 57.836 50.000 1.05 0.00 43.06 3.16
347 348 1.626321 TGGATTAGGTTTGTCAGCCGA 59.374 47.619 0.00 0.00 0.00 5.54
357 358 2.615493 CGCCACTTGTCTGGATTAGGTT 60.615 50.000 0.00 0.00 32.30 3.50
361 362 0.392461 GGCGCCACTTGTCTGGATTA 60.392 55.000 24.80 0.00 32.30 1.75
363 364 2.045926 GGCGCCACTTGTCTGGAT 60.046 61.111 24.80 0.00 32.30 3.41
395 396 8.967664 AAGCCATCGGTATTAATTTTGTAGTA 57.032 30.769 0.00 0.00 0.00 1.82
411 412 3.403038 CCAGGTATAAAGAAGCCATCGG 58.597 50.000 0.00 0.00 0.00 4.18
420 421 1.134098 GCTGCTGCCCAGGTATAAAGA 60.134 52.381 3.85 0.00 42.03 2.52
425 426 1.152819 CATGCTGCTGCCCAGGTAT 60.153 57.895 13.47 0.00 42.03 2.73
448 449 3.461773 CTGACCGCGACTCCCCAT 61.462 66.667 8.23 0.00 0.00 4.00
454 455 2.338984 GTTGTCCTGACCGCGACT 59.661 61.111 8.23 0.00 0.00 4.18
463 464 1.310933 GGCTGCCATCTGTTGTCCTG 61.311 60.000 15.17 0.00 0.00 3.86
578 583 1.345715 ACTCCATCCGGACCATTCCC 61.346 60.000 6.12 0.00 38.99 3.97
591 596 3.007940 TGTGAATCGGTCTCAAACTCCAT 59.992 43.478 0.00 0.00 0.00 3.41
605 610 1.081892 CCACCAGAAGCTGTGAATCG 58.918 55.000 3.59 0.00 0.00 3.34
622 627 2.046292 TCCTCATATCCAACGCATCCA 58.954 47.619 0.00 0.00 0.00 3.41
626 631 1.837439 ACCTTCCTCATATCCAACGCA 59.163 47.619 0.00 0.00 0.00 5.24
629 634 3.385111 AGTCGACCTTCCTCATATCCAAC 59.615 47.826 13.01 0.00 0.00 3.77
647 652 1.658717 CGCATAAGCCGAGGAGTCG 60.659 63.158 0.00 0.00 46.39 4.18
659 664 3.379057 TGTCCTCGATAACAGTCGCATAA 59.621 43.478 0.00 0.00 41.22 1.90
666 671 6.127168 TGGTATTTCATGTCCTCGATAACAGT 60.127 38.462 6.24 0.00 0.00 3.55
725 730 5.832060 AGAATTACCACTACGCCTACATACT 59.168 40.000 0.00 0.00 0.00 2.12
742 751 5.051374 GCGAGTTCATGAGCTACAGAATTAC 60.051 44.000 12.49 0.00 0.00 1.89
743 752 5.043903 GCGAGTTCATGAGCTACAGAATTA 58.956 41.667 12.49 0.00 0.00 1.40
746 755 2.417379 GGCGAGTTCATGAGCTACAGAA 60.417 50.000 12.49 0.00 0.00 3.02
752 761 0.322975 ACTTGGCGAGTTCATGAGCT 59.677 50.000 12.36 12.36 33.92 4.09
782 791 3.552684 CCATAAAGTGGTTTGGTGCACAG 60.553 47.826 20.43 0.00 43.44 3.66
806 815 1.139058 GCAGGTACATCGAACTCCCAT 59.861 52.381 0.00 0.00 0.00 4.00
810 820 0.535335 TGGGCAGGTACATCGAACTC 59.465 55.000 0.00 0.00 0.00 3.01
811 821 1.134401 CATGGGCAGGTACATCGAACT 60.134 52.381 0.00 0.00 0.00 3.01
813 823 0.908910 ACATGGGCAGGTACATCGAA 59.091 50.000 0.00 0.00 0.00 3.71
814 824 0.177836 CACATGGGCAGGTACATCGA 59.822 55.000 0.00 0.00 0.00 3.59
902 913 2.413765 GGATCAGTCCGGTCGCTC 59.586 66.667 0.00 0.00 34.13 5.03
978 989 0.677288 TTCGGTGGTCTTGACGACAT 59.323 50.000 15.60 0.00 44.68 3.06
1041 2175 2.656646 CTACGCTGGTGGTGCTCA 59.343 61.111 0.00 0.00 0.00 4.26
1052 2186 3.447025 GATGCCTTCCCGCTACGCT 62.447 63.158 0.00 0.00 0.00 5.07
1112 2246 2.502692 AAGGTCAGCCGCTTACCGAC 62.503 60.000 16.40 8.72 40.02 4.79
1176 2311 3.986277 AGAAACCTAAAACGAAGCGAGA 58.014 40.909 0.00 0.00 0.00 4.04
1371 2506 3.904800 TCTCCCGAATATGCTTGAACA 57.095 42.857 0.00 0.00 0.00 3.18
1395 2530 7.227512 CGGAATCTATAAGCAAAAATCAGGACT 59.772 37.037 0.00 0.00 0.00 3.85
1396 2531 7.355778 CGGAATCTATAAGCAAAAATCAGGAC 58.644 38.462 0.00 0.00 0.00 3.85
1399 2534 6.854892 CAGCGGAATCTATAAGCAAAAATCAG 59.145 38.462 0.00 0.00 0.00 2.90
1419 2554 8.399425 CAGATATATAGGAGTACTAAACAGCGG 58.601 40.741 0.00 0.00 34.79 5.52
1470 4080 0.988832 AGCGGGTAAACAGATTCCCA 59.011 50.000 0.00 0.00 39.87 4.37
1574 4186 3.599343 TCATCATACGCAAAGCTGTTCT 58.401 40.909 0.00 0.00 0.00 3.01
1586 4198 2.609459 GCTGGACCAGTTTCATCATACG 59.391 50.000 22.58 0.00 33.43 3.06
1590 4202 2.158623 ACAAGCTGGACCAGTTTCATCA 60.159 45.455 19.73 0.00 32.86 3.07
1598 4210 1.429463 GTCGTAACAAGCTGGACCAG 58.571 55.000 17.83 17.83 34.12 4.00
1604 4216 1.990799 TCCATCGTCGTAACAAGCTG 58.009 50.000 0.00 0.00 0.00 4.24
1606 4218 2.789893 GAGATCCATCGTCGTAACAAGC 59.210 50.000 0.00 0.00 0.00 4.01
1626 4238 3.856309 ACGTCTGTGAGCAGTGGA 58.144 55.556 0.00 0.00 43.05 4.02
1657 4269 4.022413 TGGTACGATGGTTGAAATCCAA 57.978 40.909 0.00 0.00 38.52 3.53
1722 4342 7.920151 CCGGCTTCATATAATTTTGAATGTTGA 59.080 33.333 0.00 0.00 31.83 3.18
1733 4353 5.833131 ACATGGAAACCGGCTTCATATAATT 59.167 36.000 18.85 0.00 0.00 1.40
1829 4450 3.893720 GCATTTCCATAAGATGCTTCGG 58.106 45.455 0.00 0.00 42.12 4.30
1919 5401 2.692557 TCGTCTACTCTACGCCTCTAGT 59.307 50.000 0.00 0.00 40.12 2.57
1977 5459 7.778382 AGTGATGGGGTTTAAAATAGATGTACC 59.222 37.037 0.00 0.00 0.00 3.34
1980 5462 6.833933 GGAGTGATGGGGTTTAAAATAGATGT 59.166 38.462 0.00 0.00 0.00 3.06
1993 5475 1.384643 GGCTAGGGAGTGATGGGGT 60.385 63.158 0.00 0.00 0.00 4.95
2000 5482 1.566298 AAAGGCCTGGCTAGGGAGTG 61.566 60.000 18.96 0.00 44.75 3.51
2001 5483 1.229984 AAAGGCCTGGCTAGGGAGT 60.230 57.895 18.96 0.00 44.75 3.85
2084 5566 4.899352 AGAACTAGGAATGCTGTTGAGT 57.101 40.909 0.00 0.00 0.00 3.41
2131 5613 7.591821 TGGCTCCCTGGTTAATAGAATATTTT 58.408 34.615 0.00 0.00 0.00 1.82
2188 5671 9.167311 AGACCAGTGTACAGATTGAATTAAATC 57.833 33.333 7.39 7.39 36.91 2.17
2257 5740 6.377327 AGCACGAAATCAGAAGAAGAAAAA 57.623 33.333 0.00 0.00 0.00 1.94
2262 5745 7.483059 GGATTTTTAGCACGAAATCAGAAGAAG 59.517 37.037 15.76 0.00 41.68 2.85
2361 5844 0.682209 GGGTGCGTGGGACTAGTCTA 60.682 60.000 21.88 9.30 0.00 2.59
2393 5877 5.335661 CCCAGACATAAGCCAGTTACAAAAC 60.336 44.000 0.00 0.00 35.72 2.43
2583 6067 9.967346 TGATGTATATAGTAACTGACAAGCTTC 57.033 33.333 0.00 0.00 0.00 3.86
2862 6367 4.323417 ACAATTGACTACAATCAAGCGGA 58.677 39.130 13.59 0.00 44.67 5.54
2865 6370 6.595716 AGGTAGACAATTGACTACAATCAAGC 59.404 38.462 33.53 21.34 44.67 4.01
2903 6408 8.339714 AGTTCATCAAAACATCAAAATGCTTTG 58.660 29.630 7.59 7.59 44.66 2.77
2953 6458 6.204882 GGAAAAAGTACCATGGATTATCCTCG 59.795 42.308 21.47 3.36 37.46 4.63
3010 6515 7.781324 ACCAAGAGAATGTTAATGGACAATT 57.219 32.000 0.00 0.00 32.47 2.32
3135 6640 8.306038 TGTTTGTATGCATTTTCTATTTCAGCT 58.694 29.630 3.54 0.00 0.00 4.24
3156 6661 4.556942 TCACAACAGAGCTCAATGTTTG 57.443 40.909 17.77 16.76 37.54 2.93
3168 6673 3.181465 GGGAGTCAAGAGTTCACAACAGA 60.181 47.826 0.00 0.00 0.00 3.41
3215 6720 3.420839 ACAGCCTTCAGTTTTGTTTCG 57.579 42.857 0.00 0.00 0.00 3.46
3318 6823 3.565482 AGCCGCACCTGATTGTAATATTG 59.435 43.478 0.00 0.00 0.00 1.90
3380 6885 7.689812 CAGTGTTAAACTCTGCATTAATCTTCG 59.310 37.037 0.00 0.00 36.83 3.79
3596 7102 1.667191 CGCAGACACAGCAAGCTCT 60.667 57.895 0.00 0.00 0.00 4.09
3746 7252 1.136695 CAGCCAACAAAAGCAAGGTCA 59.863 47.619 0.00 0.00 0.00 4.02
3818 7324 3.942130 AAAGTAACTGCTTGGATTGCC 57.058 42.857 0.00 0.00 0.00 4.52
3819 7325 5.125417 TCCATAAAGTAACTGCTTGGATTGC 59.875 40.000 0.00 0.00 0.00 3.56
3827 7333 6.830912 TGATATGCTCCATAAAGTAACTGCT 58.169 36.000 0.00 0.00 29.74 4.24
3912 7418 5.874810 TGACATTCAAGCATTACTGTAGTCC 59.125 40.000 0.00 0.00 0.00 3.85
3915 7421 6.256539 ACGATGACATTCAAGCATTACTGTAG 59.743 38.462 0.00 0.00 0.00 2.74
3969 7475 3.565902 GCATCCCTCTAAACCTGCAATAC 59.434 47.826 0.00 0.00 0.00 1.89
4066 7572 8.451908 AAGAACAAACAGTAGCAGATTTTAGT 57.548 30.769 0.00 0.00 0.00 2.24
4173 7679 4.452795 GGCAGAGTTCCAACTAGAAAACTC 59.547 45.833 16.38 16.38 45.04 3.01
4191 7697 2.605607 CCCTGACCATGGTGGCAGA 61.606 63.158 27.26 6.17 42.67 4.26
4194 7700 2.044946 GACCCTGACCATGGTGGC 60.045 66.667 25.52 9.69 42.67 5.01
4230 7736 9.228949 GAGCTTGTCAAATCATTCATATCCTAT 57.771 33.333 0.00 0.00 0.00 2.57
4259 7765 4.889832 AAAATCGTTCATGATCCTCTGC 57.110 40.909 0.00 0.00 0.00 4.26
4286 7792 3.367087 GCTCAAGTAGAAGCCAACGACTA 60.367 47.826 0.00 0.00 0.00 2.59
4412 7919 7.081349 GTCTCATGATTCTCCAAGTAGATACG 58.919 42.308 0.00 0.00 0.00 3.06
4415 7922 6.462768 GCTGTCTCATGATTCTCCAAGTAGAT 60.463 42.308 0.00 0.00 0.00 1.98
4462 7969 3.012959 TGTTCCCATCTCTTCTCCCTACT 59.987 47.826 0.00 0.00 0.00 2.57
4463 7970 3.133183 GTGTTCCCATCTCTTCTCCCTAC 59.867 52.174 0.00 0.00 0.00 3.18
4464 7971 3.245984 TGTGTTCCCATCTCTTCTCCCTA 60.246 47.826 0.00 0.00 0.00 3.53
4551 8093 7.048629 TCAAAATAAGTTCATGGCAGACAAA 57.951 32.000 0.00 0.00 0.00 2.83
4583 8125 1.258982 CGGTTGCTTCTCATGCGTATC 59.741 52.381 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.